F188108

General Info

Members Datasets Scaffolds Average Seq Length
143 121 113 520

Family's Representative Sequence

Representative Sequence 3300005471|Ga0070698_100066438|Ga0070698_1000664383
Length 568
Sequence MTTVKWNVRAGAYYDSVVLMQLQRGLLSLPGVIDAGVVMATQANRDLLAANNLLPDSISANPDDLLIVVKADADASALDAISKVDELLARRKSSAVSQDFRPRSLSGATKQLPEANWVLISVPGRYAASVAREALDLNKHVFLYSDNVSLEDEIALKKAAREKGLLVMGPDCGTAIINGVGLGFANRIRRGPIGIVGASGTGTQAVTVQIHNLGAGISHAIGTGGRDLKSDVGAITAHQALDLLARDPGTEVIVLISKPPSSEVATKLLAAAQSIEKPVVIDFIGYPAPARQLGNLHFATSLSEAAEIAVSQLSVTSNQPPGTGKSVPGYLRGLFSGGTLAYETMLGLQATLVPLYSNAPITDNQLLKDPLHSQAHTIIDLGDEFFMVGRLHPMIDNDLRIRRMRQEAADPQVGMILLDVVLGEGSHPDPASELGPVLKEIREKRLESSGRDHTIEGLEIVAIVIGTEEDPQNRQSQIERLVEAGAVVFSSATEAINHVSVRLTRHVMNEFPPVLLERLTQPLAAINVGLESFYESLISQGGQAVHVEWRPPAGGNEKLAALLQKMKK

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2512564013 Brevibacillus sp. BC25 Isolate Rhizosphere
3 2602042109 Klebsiella aerogenes NFIX39 Isolate Rhizoplane
4 2738541274 Mycobacterium sp. YR708 Isolate Unclassified
5 2738543028 Mycobacterium sp. YR782 Isolate Unclassified
6 2788500588 Lysinibacillus sp. YS11 Isolate Unclassified
7 2791355197 Bradyrhizobium sp. C9 Isolate Nodule
8 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
9 2857465823 Brevibacillus sp. R-74266 Isolate Unclassified
10 2857591370 Brevibacillus sp. R-71934 Isolate Unclassified
11 2883821847 Microlunatus elymi KUDC0627 Isolate Rhizosphere
12 2885374607 Bradyrhizobium sp. NAS96.2 Isolate Unclassified
13 2891670763 Buttiauxella sp. B2 Isolate Rhizosphere
14 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule
15 2904606771 Lysinibacillus macroides 1284 Isolate Rhizosphere
16 2904690495 Bradyrhizobium ivorense CI-1B Isolate Nodule
17 2906610324
18 2908739725 Bradyrhizobium sp. UFLA03-84 Isolate Nodule
19 2908756301 Bradyrhizobium ivorense CI-41S Isolate Nodule
20 2915597211 Brevibacillus brevis Ag35 Isolate Nodule
21 2915606848 Brevibacillus sp. HD1.4A Isolate Rhizosphere
22 2922425934
23 2929183550 Brevibacillus sp. R-71971 Hybrid assembly Isolate Unclassified
24 2932406140 Serratia sp. 2723 Isolate Rhizosphere
25 2939573065 Citrobacter sp. 506 Isolate Rhizosphere
26 2939577877 Serratia sp. 509 Isolate Rhizosphere
27 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
28 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
29 3001892409 Neobacillus rhizophilus FJAT-49825 Isolate Rhizosphere
30 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
31 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
32 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
33 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
34 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
35 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
36 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
37 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
38 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
39 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
40 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
41 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
42 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
43 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
44 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
45 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
46 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
47 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
48 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
49 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
50 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
51 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
52 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
53 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
54 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
55 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
56 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
57 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
58 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
59 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
60 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
61 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
62 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
63 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
64 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
65 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
66 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
67 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
68 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
81 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
82 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
83 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
84 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
85 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
86 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
87 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
88 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
89 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
90 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
91 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
92 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
93 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
94 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
95 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
96 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
97 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
98 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
99 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
100 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
101 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
102 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
103 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
104 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
109 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
110 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
111 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
112 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
113 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
115 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
116 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
117 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
118 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
119 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
120 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
121 8019565922 Bradyrhizobium sp. JR3.5 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 80.14
Metatranscriptomes 0
Isolates 19.86

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.2
Nodule 5.59
Rhizoplane 2.8
Rhizosphere 76.92
Stem 0
Stem Tuber 0
Unclassified 10.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_31698 2162886007 Bacteria 3320
2 Ga0065704_10071720 3300005289 Bacteria 10128
3 Ga0065707_10000452 3300005295 Bacteria 48326
4 Ga0065707_10082602 3300005295 Bacteria 13438
5 Ga0070659_100023665 3300005366 Bacteria 4703
6 Ga0070713_100041567 3300005436 Bacteria 3746
7 Ga0070700_100061508 3300005441 Bacteria 2369
8 Ga0070706_100020533 3300005467 Bacteria 6087
9 Ga0070698_100066438 3300005471 Bacteria 3630
10 Ga0070699_100004815 3300005518 Bacteria 11912
11 Ga0070699_100093222 3300005518 Unclassified 2635
12 Ga0070679_100087141 3300005530 Bacteria 3109
13 Ga0070665_100143499 3300005548 Unclassified 2391
14 Ga0068855_100112984 3300005563 Bacteria 3117
15 Ga0068856_100084100 3300005614 Bacteria 3161
16 Ga0068859_100014568 3300005617 Bacteria 7898
17 Ga0068864_100098174 3300005618 Bacteria 2594
18 Ga0068862_100005725 3300005844 Bacteria 10369
19 Ga0081455_10016803 3300005937 Bacteria 7040
20 Ga0081539_10005491 3300005985 Bacteria 12882
21 Ga0075365_10063761 3300006038 Bacteria 2467
22 Ga0075370_10000145 3300006353 Bacteria 24072
23 Ga0075428_100010853 3300006844 Bacteria 10126
24 Ga0075430_100002496 3300006846 Bacteria 15333
25 Ga0075431_100130104 3300006847 Unclassified 2597
26 Ga0075429_100001970 3300006880 Bacteria 17071
27 Ga0075429_100017921 3300006880 Bacteria 6122
28 Ga0097620_100014568 3300006931 Bacteria 7898
29 Ga0105251_10000992 3300009011 Bacteria 24910
30 Ga0105244_10000042 3300009036 Bacteria 150699
31 Ga0105244_10000443 3300009036 Bacteria 37920
32 Ga0105244_10005680 3300009036 Bacteria 8231
33 Ga0105250_10000025 3300009092 Bacteria 215424
34 Ga0111539_10252905 3300009094 Bacteria 2052
35 Ga0114129_10001275 3300009147 Bacteria 33647
36 Ga0114129_10021029 3300009147 Bacteria 9267
37 Ga0114129_10074831 3300009147 Unclassified 4716
38 Ga0114129_10313057 3300009147 Bacteria 2089
39 Ga0105243_10031339 3300009148 Bacteria 4099
40 Ga0105246_10068549 3300011119 Bacteria 2488
41 Ga0157373_10023999 3300013100 Bacteria 4419
42 Ga0157371_10041016 3300013102 Bacteria 3304
43 Ga0157370_10195485 3300013104 Bacteria 1877
44 Ga0157378_10023472 3300013297 Bacteria 5427
45 Ga0209025_1000466 3300025294 Bacteria 79039
46 Ga0209051_1015824 3300025303 Bacteria 3454
47 Ga0207696_1000007 3300025711 Bacteria 578417
48 Ga0207696_1000787 3300025711 Bacteria 20820
49 Ga0207655_1000055 3300025728 Bacteria 281598
50 Ga0207655_1013767 3300025728 Bacteria 4617
51 Ga0207713_1000005 3300025735 Bacteria 649958
52 Ga0207657_10010890 3300025919 Bacteria 9051
53 Ga0207646_10122115 3300025922 Bacteria 2340
54 Ga0207664_10042089 3300025929 Bacteria 3564
55 Ga0207690_10125163 3300025932 Bacteria 1873
56 Ga0207709_10019250 3300025935 Bacteria 3834
57 Ga0207667_10103422 3300025949 Bacteria 2938
58 Ga0207708_10038949 3300026075 Unclassified 3622
59 Ga0207676_10095640 3300026095 Bacteria 2450
60 Ga0268265_10011247 3300028380 Bacteria 6050
61 Ga0316578_10057389 3300031728 Bacteria 2287
62 Ga0316574_0011797 3300035398 Bacteria 4976
63 Ga0373937_0033095 3300036401 Bacteria 4692
64 Ga0373937_0050164 3300036401 Bacteria 3822
65 Ga0316584_0120712 3300036712 Bacteria 1959
66 Ga0395900_0029865 3300037418 Bacteria 5595
67 Ga0395901_0067922 3300038443 Bacteria 3714
68 Ga0395901_0206029 3300038443 Bacteria 2060
69 Ga0451577_0024990 3300042876 Bacteria 5425
70 Ga0453683_0039874 3300044673 Bacteria 2951
71 Ga0453684_0010304 3300044712 Bacteria 16008
72 Ga0453684_0245934 3300044712 Bacteria 2057
73 Ga0451576_0061982 3300045051 Bacteria 3899
74 Ga0466967_0030158 3300045976 Bacteria 4549
75 Ga0495650_0005098 3300046471 Bacteria 8686
76 Ga0495597_0000525 3300046542 Bacteria 31805
77 Ga0495588_0019571 3300046674 Bacteria 3317
78 Ga0495672_0000027 3300047320 Bacteria 325651
79 Ga0495672_0063339 3300047320 Bacteria 2123
80 Ga0495679_010274 3300047446 Bacteria 3685
81 Ga0496104_0012624 3300048907 Bacteria 7603
82 Ga0496112_0163533 3300048915 Bacteria 2192
83 Ga0496114_0172458 3300048917 Bacteria 1886
84 Ga0496117_0011169 3300048920 Bacteria 8069
85 Ga0496119_0004061 3300048922 Bacteria 14770
86 Ga0496120_0006069 3300048923 Bacteria 9383
87 Ga0496123_0021962 3300048926 Bacteria 4937
88 Ga0496126_0064059 3300048929 Bacteria 3293
89 Ga0501038_0041539 3300049574 Bacteria 4010
90 Ga0501042_0003992 3300049578 Bacteria 9345
91 Ga0501043_0056173 3300049579 Bacteria 3092
92 Ga0501047_0047093 3300049581 Bacteria 4166
93 Ga0501067_0012206 3300049583 Bacteria 4763
94 Ga0501073_0012059 3300049589 Bacteria 6310
95 Ga0501075_0024667 3300049591 Bacteria 4414
96 Ga0501075_0104212 3300049591 Bacteria 2156
97 Ga0501076_0007456 3300049592 Bacteria 7964
98 Ga0501080_0081680 3300049742 Bacteria 3002
99 Ga0501035_0216159 3300049822 Bacteria 1638
100 Ga0501044_0091344 3300049823 Bacteria 3071
101 Ga0501044_0294497 3300049823 Bacteria 1553
102 nmdc:mga0k408_1843_c1 3300050493 Bacteria 6870
103 nmdc:mga07m45_267_c1 3300050496 Bacteria 21068
104 nmdc:mga05p37_31503_c1 3300050507 Bacteria 6477
105 nmdc:mga05p37_40100_c1 3300050507 Bacteria 5750
106 nmdc:mga05p37_858_c1 3300050507 Bacteria 34211
107 nmdc:mga09592_35465_c1 3300050508 Bacteria 4176
108 nmdc:mga09592_5351_c1 3300050508 Bacteria 10434
109 nmdc:mga09592_76079_c1 3300050508 Bacteria 2855
110 nmdc:mga0qj67_192024_c1 3300050509 Unclassified 1659
111 nmdc:mga0qj67_5973_c1 3300050509 Bacteria 8920
112 nmdc:mga0qj67_73848_c1 3300050509 Bacteria 2724
113 Ga0501084_0012899 3300054114 Bacteria 6920

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009094 Ga0111539_10252905 Ga0111539_102529052 438
2 3300025303 Ga0209051_1015824 Ga0209051_10158242 446
3 3300009036 Ga0105244_10000042 Ga0105244_1000004222 449
4 3300025728 Ga0207655_1000055 Ga0207655_1000055116 449
5 3300047320 Ga0495672_0063339 Ga0495672_0063339_95_1651 449
6 3300049574 Ga0501038_0041539 Ga0501038_0041539_135_1643 452
7 3300049581 Ga0501047_0047093 Ga0501047_0047093_365_1873 452
8 3300049583 Ga0501067_0012206 Ga0501067_0012206_889_2397 452
9 3300049589 Ga0501073_0012059 Ga0501073_0012059_297_1805 452
10 3300049823 Ga0501044_0091344 Ga0501044_0091344_1083_2591 452
11 3300049823 Ga0501044_0294497 Ga0501044_0294497_80_1534 452
12 3300005548 Ga0070665_100143499 Ga0070665_1001434992 456
13 3300005614 Ga0068856_100084100 Ga0068856_1000841002 456
14 3300026075 Ga0207708_10038949 Ga0207708_100389493 456
15 3300048915 Ga0496112_0163533 Ga0496112_0163533_302_1867 456
16 3300013297 Ga0157378_10023472 Ga0157378_100234723 457
17 3300005436 Ga0070713_100041567 Ga0070713_1000415673 461
18 3300025294 Ga0209025_1000466 Ga0209025_100046647 461
19 3300025929 Ga0207664_10042089 Ga0207664_100420892 461
20 3300006846 Ga0075430_100002496 Ga0075430_1000024964 465
21 3300048917 Ga0496114_0172458 Ga0496114_0172458_63_1565 465
22 3300050509 nmdc:mga0qj67_5973_c1 nmdc:mga0qj67_5973_c1_1140_2645 465
23 iso_pu_bacteria 2791355197 2793070882 468
24 iso_pu_bacteria 2885374607 2885374704 468
25 iso_pu_bacteria 2903748898 2903753748 468
26 iso_pu_bacteria 2904690495 2904694799 468
27 iso_pu_bacteria 2906610324 2906610439 468
28 iso_pu_bacteria 2908739725 2908743957 468
29 iso_pu_bacteria 2908756301 2908760019 468
30 iso_pu_bacteria 2922425934 2922428917 468
31 iso_pu_bacteria 3005474847 3005479067 468
32 iso_pu_bacteria 8019565922 8019567272 468
33 3300005366 Ga0070659_100023665 Ga0070659_1000236652 470
34 3300005530 Ga0070679_100087141 Ga0070679_1000871412 470
35 3300005563 Ga0068855_100112984 Ga0068855_1001129842 470
36 3300013100 Ga0157373_10023999 Ga0157373_100239992 470
37 3300013104 Ga0157370_10195485 Ga0157370_101954852 470
38 3300025919 Ga0207657_10010890 Ga0207657_100108905 470
39 3300025932 Ga0207690_10125163 Ga0207690_101251631 470
40 3300025949 Ga0207667_10103422 Ga0207667_101034222 470
41 3300045976 Ga0466967_0030158 Ga0466967_0030158_2715_4226 471
42 3300049578 Ga0501042_0003992 Ga0501042_0003992_2494_3999 471
43 3300049579 Ga0501043_0056173 Ga0501043_0056173_990_2504 471
44 3300049742 Ga0501080_0081680 Ga0501080_0081680_1031_2545 471
45 3300049822 Ga0501035_0216159 Ga0501035_0216159_87_1601 471
46 3300006353 Ga0075370_10000145 Ga0075370_1000014514 473
47 3300009011 Ga0105251_10000992 Ga0105251_1000099220 473
48 3300009036 Ga0105244_10005680 Ga0105244_100056809 473
49 3300009148 Ga0105243_10031339 Ga0105243_100313392 473
50 3300025735 Ga0207713_1000005 Ga0207713_1000005385 473
51 3300025935 Ga0207709_10019250 Ga0207709_100192504 473
52 3300036401 Ga0373937_0050164 Ga0373937_0050164_1187_2740 473
53 3300050493 nmdc:mga0k408_1843_c1 nmdc:mga0k408_1843_c1_4972_6525 473
54 3300050496 nmdc:mga07m45_267_c1 nmdc:mga07m45_267_c1_14984_16537 473
55 iso_pu_bacteria 2738541274 2738705852 473
56 iso_pu_bacteria 2738543028 2739330341 473
57 iso_pu_bacteria 2995726249 2995729277 473
58 3300047320 Ga0495672_0000027 Ga0495672_0000027_15838_17388 474
59 3300048929 Ga0496126_0064059 Ga0496126_0064059_1645_3204 474
60 iso_pu_bacteria 2512564013 2512640045 475
61 iso_pu_bacteria 2857465823 2857469286 475
62 iso_pu_bacteria 2857591370 2857595298 475
63 iso_pu_bacteria 2915597211 2915603255 475
64 iso_pu_bacteria 2929183550 2929188336 475
65 iso_pu_bacteria 2915606848 2915610341 476
66 iso_pu_bacteria 3001892409 3001893156 476
67 3300006038 Ga0075365_10063761 Ga0075365_100637612 477
68 3300009036 Ga0105244_10000443 Ga0105244_1000044312 477
69 iso_pu_bacteria 2602042109 2603866220 477
70 iso_pu_bacteria 2811994874 2812333320 477
71 iso_pu_bacteria 2932406140 2932407277 477
72 iso_pu_bacteria 2939573065 2939576254 477
73 iso_pu_bacteria 2939577877 2939579187 477
74 iso_pu_bacteria 2788500588 2791212802 478
75 iso_pu_bacteria 2891670763 2891675034 478
76 iso_pu_bacteria 2904606771 2904607065 478
77 iso_pu_bacteria 2946033335 2946034272 478
78 3300013102 Ga0157371_10041016 Ga0157371_100410162 480
79 3300005937 Ga0081455_10016803 Ga0081455_100168033 481
80 3300009092 Ga0105250_10000025 Ga0105250_10000025184 481
81 3300025711 Ga0207696_1000007 Ga0207696_1000007228 481
82 3300036401 Ga0373937_0033095 Ga0373937_0033095_2468_4030 481
83 3300038443 Ga0395901_0067922 Ga0395901_0067922_190_1734 481
84 3300038443 Ga0395901_0206029 Ga0395901_0206029_487_2034 481
85 3300025711 Ga0207696_1000787 Ga0207696_10007875 482
86 3300025728 Ga0207655_1013767 Ga0207655_10137672 482
87 3300037418 Ga0395900_0029865 Ga0395900_0029865_2825_4375 482
88 3300046471 Ga0495650_0005098 Ga0495650_0005098_601_2160 482
89 3300046542 Ga0495597_0000525 Ga0495597_0000525_29314_30864 482
90 3300046674 Ga0495588_0019571 Ga0495588_0019571_1541_3091 482
91 3300047446 Ga0495679_010274 Ga0495679_010274_1379_2938 482
92 3300048907 Ga0496104_0012624 Ga0496104_0012624_714_2273 482
93 3300048920 Ga0496117_0011169 Ga0496117_0011169_4632_6191 482
94 3300048922 Ga0496119_0004061 Ga0496119_0004061_6440_7999 482
95 3300048923 Ga0496120_0006069 Ga0496120_0006069_6799_8358 482
96 3300048926 Ga0496123_0021962 Ga0496123_0021962_2577_4136 482
97 3300050509 nmdc:mga0qj67_192024_c1 nmdc:mga0qj67_192024_c1_21_1586 504
98 3300036712 Ga0316584_0120712 Ga0316584_0120712_52_1686 509
99 3300035398 Ga0316574_0011797 Ga0316574_0011797_2725_4341 519
100 3300044712 Ga0453684_0245934 Ga0453684_0245934_167_1819 519
101 iso_pu_bacteria 2883821847 2883825803 520
102 3300054114 Ga0501084_0012899 Ga0501084_0012899_464_2134 521
103 3300049591 Ga0501075_0104212 Ga0501075_0104212_41_1681 523
104 3300031728 Ga0316578_10057389 Ga0316578_100573892 529
105 3300050509 nmdc:mga0qj67_73848_c1 nmdc:mga0qj67_73848_c1_836_2524 536
106 3300005441 Ga0070700_100061508 Ga0070700_1000615082 539
107 3300005617 Ga0068859_100014568 Ga0068859_1000145684 539
108 3300005618 Ga0068864_100098174 Ga0068864_1000981742 539
109 3300005844 Ga0068862_100005725 Ga0068862_1000057255 539
110 3300005985 Ga0081539_10005491 Ga0081539_1000549111 539
111 3300006931 Ga0097620_100014568 Ga0097620_1000145684 539
112 3300026095 Ga0207676_10095640 Ga0207676_100956402 539
113 3300028380 Ga0268265_10011247 Ga0268265_100112474 539
114 3300050508 nmdc:mga09592_76079_c1 nmdc:mga09592_76079_c1_1155_2834 539
115 3300005467 Ga0070706_100020533 Ga0070706_1000205334 540
116 3300006844 Ga0075428_100010853 Ga0075428_1000108537 540
117 3300006880 Ga0075429_100001970 Ga0075429_1000019704 540
118 3300006880 Ga0075429_100017921 Ga0075429_1000179214 540
119 3300009147 Ga0114129_10001275 Ga0114129_1000127513 540
120 3300009147 Ga0114129_10021029 Ga0114129_100210297 540
121 3300011119 Ga0105246_10068549 Ga0105246_100685492 540
122 3300025922 Ga0207646_10122115 Ga0207646_101221152 540
123 3300050507 nmdc:mga05p37_40100_c1 nmdc:mga05p37_40100_c1_2701_4389 540
124 3300050507 nmdc:mga05p37_858_c1 nmdc:mga05p37_858_c1_21250_22920 540
125 3300050508 nmdc:mga09592_35465_c1 nmdc:mga09592_35465_c1_740_2428 540
126 3300050508 nmdc:mga09592_5351_c1 nmdc:mga09592_5351_c1_8279_9949 540
127 3300005518 Ga0070699_100093222 Ga0070699_1000932222 541
128 3300042876 Ga0451577_0024990 Ga0451577_0024990_1566_3254 541
129 3300044712 Ga0453684_0010304 Ga0453684_0010304_2602_4290 541
130 3300045051 Ga0451576_0061982 Ga0451576_0061982_711_2399 541
131 3300049591 Ga0501075_0024667 Ga0501075_0024667_163_1836 541
132 3300049592 Ga0501076_0007456 Ga0501076_0007456_161_1834 541
133 3300005295 Ga0065707_10082602 Ga0065707_100826027 542
134 3300005471 Ga0070698_100066438 Ga0070698_1000664383 542
135 3300005518 Ga0070699_100004815 Ga0070699_10000481510 542
136 3300006847 Ga0075431_100130104 Ga0075431_1001301042 542
137 3300009147 Ga0114129_10074831 Ga0114129_100748312 542
138 3300009147 Ga0114129_10313057 Ga0114129_103130572 542
139 3300050507 nmdc:mga05p37_31503_c1 nmdc:mga05p37_31503_c1_3329_5005 542
140 2162886007 SwRhRL2b_contig_31698 SwRhRL2b_0993.00011890 543
141 3300005289 Ga0065704_10071720 Ga0065704_100717202 543
142 3300005295 Ga0065707_10000452 Ga0065707_1000045213 543
143 3300044673 Ga0453683_0039874 Ga0453683_0039874_285_1955 543

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00549

Ligase_CoA

CoA-ligase

334

502

0.95

PF02629

CoA_binding

CoA binding domain

189

285

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
6hxq-assembly1.cif.gz_C structure of citryl-coa synthetase from hydrogenobacter thermophilus 0.8307 91 273
7jkr-assembly1.cif.gz_A gtp-specific succinyl-coa synthetase complexed with mg-gmppnp, phosphohistidine loop pointing towards nucleotide binding site 0.8272 91 299
3ufx-assembly1.cif.gz_A thermus aquaticus succinyl-coa synthetase in complex with gdp-mn2+ 0.8265 91 295
2nu8-assembly1.cif.gz_A c123at mutant of e. coli succinyl-coa synthetase 0.8177 91 296
2nu6-assembly1.cif.gz_A c123aa mutant of e. coli succinyl-coa synthetase 0.8162 91 294
ID Description Score Start End Superfamily
af_P77187_106_178_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9767 96 166 3.40.50.720
af_P77187_189_311_3.40.50.261 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Succinyl-CoA synthetase domains 0.9749 177 298 3.40.50.261
af_P77187_189_311_3.40.50.261 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Succinyl-CoA synthetase domains 0.9594 177 298 3.40.50.261
af_P77187_106_178_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9378 96 166 3.40.50.720
af_P77187_342_512_3.40.50.261 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Succinyl-CoA synthetase domains 0.9251 315 483 3.40.50.261
ID Description Score Start End GO Terms
AF-A0A014AQ32-F1-model_v4 deleted 0.9969 109 242
AF-V0UUR0-F1-model_v4 deleted 0.9941 91 252
AF-A0A2X2RNS1-F1-model_v4 deleted 0.9907 115 272
AF-A0A6V8PNZ4-F1-model_v4 FdrA protein 0.989 103 200
AF-A0A4U9IDL4-F1-model_v4 Membrane protein FdrA 0.9872 96 219 GO:0004775
GO:0004776
GO:0005829
GO:0006099
GO:0009361

Feature Viewer

pLDDT pTM Quality
81.99 0.59 Medium
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Predicted Structure (AlphaFold2)

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