F186391

General Info

Members Datasets Scaffolds Average Seq Length
142 112 129 176

Family's Representative Sequence

Representative Sequence 3300037418|Ga0395900_1174093|Ga0395900_1174093_53_652
Length 199
Sequence MQNEPSSIPRYQANLRKGIQKRESDMRYRRAMVPGGTYFFTVNLAHRRSALLVQHIDDLRASIRAVKARHPFTILAMVVLPEHLHAIWRLPEDDARYPMRWSLIKAGFSRCIEADELILPDRMARRERVVWQRRYWEHRIRDEADLQRHIDYIHYNPVKHGWVSRPTDWAYSSLHRYIAHGLLPADWGGSEVEGINGES

Samples

Sample ID Description Type Environment
1 2508501009 Bradyrhizobium sp. WSM471 Isolate Nodule
2 2904690495 Bradyrhizobium ivorense CI-1B Isolate Nodule
3 2935908558 Bradyrhizobium sp. F1.1.1 Isolate Nodule
4 2935916978 Bradyrhizobium sp. F1.13.3 Isolate Nodule
5 2935926038 Bradyrhizobium sp. F1.2.1 Isolate Nodule
6 2935934488 Bradyrhizobium sp. F1.2.2 Isolate Nodule
7 2935942939 Bradyrhizobium sp. F1.2.6 Isolate Nodule
8 2935951376 Bradyrhizobium sp. F1.2.8 Isolate Nodule
9 2935967501 Bradyrhizobium sp. F1.6.2 Isolate Nodule
10 2941531003 Bradyrhizobium sp. LB11.1 Isolate Nodule
11 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
20 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
21 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
22 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
23 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
24 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
25 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
26 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
27 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
28 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
35 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
36 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
37 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
38 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
39 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
40 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
41 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
42 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
43 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
44 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
45 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
46 3300041408 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z062817_5195 Metagenome Rhizosphere
47 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
48 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
49 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
50 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
51 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
52 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
53 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
54 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
55 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
56 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
57 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
58 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
59 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
60 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
61 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
62 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
63 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
64 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
65 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
66 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
67 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
68 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
69 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
70 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
71 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
72 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
73 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
74 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
75 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
76 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
77 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
78 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
79 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
80 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
81 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
82 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
83 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
84 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
85 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
86 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
87 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
88 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
89 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
90 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
91 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
92 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
93 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
98 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
99 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
100 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
101 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
102 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
103 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
104 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
105 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
106 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
107 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
109 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
110 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
111 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
112 8019687851 Bradyrhizobium sp. F1.13.4 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 92.25
Metatranscriptomes 0
Isolates 7.75

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.11
Nodule 7.75
Rhizoplane 4.23
Rhizosphere 82.39
Stem 0
Stem Tuber 0
Unclassified 3.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25404J52841_10029660 3300003659 Bacteria 1173
2 Ga0070714_100699765 3300005435 Bacteria 978
3 Ga0070706_100095574 3300005467 Bacteria 2758
4 Ga0070698_101034543 3300005471 Unclassified 769
5 Ga0070679_100542396 3300005530 Bacteria 1107
6 Ga0068855_101101705 3300005563 Unclassified 830
7 Ga0068852_100054742 3300005616 Bacteria 3440
8 Ga0081455_10000875 3300005937 Bacteria 38950
9 Ga0081538_10179397 3300005981 Bacteria 909
10 Ga0081540_1000593 3300005983 Bacteria 34646
11 Ga0081540_1026883 3300005983 Bacteria 3274
12 Ga0070717_11013946 3300006028 Bacteria 756
13 Ga0070715_10064822 3300006163 Bacteria 1615
14 Ga0070716_100979861 3300006173 Unclassified 667
15 Ga0099795_10067684 3300007788 Bacteria 1341
16 Ga0105032_102348 3300009979 Bacteria 1694
17 Ga0157375_10345747 3300013308 Bacteria 1653
18 Ga0209256_1068071 3300025299 Bacteria 809
19 Ga0207684_10588972 3300025910 Bacteria 950
20 Ga0207663_10776544 3300025916 Bacteria 762
21 Ga0207664_11045902 3300025929 Bacteria 731
22 Ga0207665_11170273 3300025939 Unclassified 613
23 Ga0207667_11129373 3300025949 Unclassified 766
24 Ga0207698_10245510 3300026142 Bacteria 1635
25 Ga0316575_10183174 3300031665 Bacteria 870
26 Ga0316578_10402602 3300031728 Unclassified 811
27 Ga0316577_10026062 3300031733 Bacteria 3253
28 Ga0373931_0301470 3300035691 Bacteria 990
29 Ga0316584_0020259 3300036712 Bacteria 4818
30 Ga0395900_1174093 3300037418 Bacteria 683
31 Ga0395898_0109396 3300037466 Bacteria 2650
32 Ga0395905_0941225 3300037471 Bacteria 767
33 Ga0395901_1281714 3300038443 Bacteria 695
34 Ga0436360_0170334 3300039438 Bacteria 774
35 Ga0436360_1363056 3300039438 Bacteria 816
36 Ga0436361_0928899 3300039447 Bacteria 888
37 Ga0436362_1007913 3300039453 Bacteria 610
38 Ga0439453_0114325 3300041408 Bacteria 613
39 Ga0451841_1379543 3300041498 Bacteria 771
40 Ga0439448_0107545 3300042005 Bacteria 951
41 Ga0495638_0003037 3300046460 Bacteria 13368
42 Ga0495580_0073633 3300046472 Unclassified 2385
43 Ga0495605_0040547 3300046474 Bacteria 2323
44 Ga0495605_0149692 3300046474 Bacteria 1042
45 Ga0495664_0021153 3300046477 Bacteria 3758
46 Ga0495584_0000043 3300046491 Bacteria 90007
47 Ga0495584_0142131 3300046491 Bacteria 1218
48 Ga0495584_0178456 3300046491 Bacteria 1079
49 Ga0495585_0018521 3300046492 Bacteria 4016
50 Ga0495585_0058396 3300046492 Bacteria 2128
51 Ga0495585_0093764 3300046492 Bacteria 1614
52 Ga0495585_0167579 3300046492 Bacteria 1136
53 Ga0495594_0213239 3300046499 Bacteria 1101
54 Ga0495596_0084567 3300046500 Bacteria 1231
55 Ga0495596_0118479 3300046500 Bacteria 1028
56 Ga0495607_0037953 3300046501 Bacteria 2889
57 Ga0495583_0073830 3300046506 Bacteria 1494
58 Ga0495583_0171789 3300046506 Bacteria 890
59 Ga0495606_0020639 3300046507 Bacteria 4849
60 Ga0495606_0023718 3300046507 Bacteria 4438
61 Ga0495606_0189237 3300046507 Bacteria 1181
62 Ga0495616_0043628 3300046513 Bacteria 2277
63 Ga0495616_0060931 3300046513 Bacteria 1851
64 Ga0495620_0022505 3300046515 Bacteria 3033
65 Ga0495631_0016739 3300046518 Bacteria 3485
66 Ga0495632_0010909 3300046519 Bacteria 5338
67 Ga0495643_0079264 3300046522 Bacteria 1712
68 Ga0495643_0182596 3300046522 Bacteria 1018
69 Ga0495644_0010432 3300046523 Bacteria 3581
70 Ga0495642_0012090 3300046528 Bacteria 3325
71 Ga0495642_0103523 3300046528 Bacteria 1213
72 Ga0495642_0127006 3300046528 Bacteria 1096
73 Ga0495609_0010728 3300046538 Bacteria 4383
74 Ga0495597_0059573 3300046542 Bacteria 1666
75 Ga0495597_0073364 3300046542 Bacteria 1471
76 Ga0495668_0018032 3300046616 Bacteria 4085
77 Ga0495668_0253844 3300046616 Bacteria 962
78 Ga0495611_0071953 3300046648 Bacteria 1581
79 Ga0495625_0124226 3300046660 Bacteria 1753
80 Ga0495661_0079911 3300046665 Bacteria 1888
81 Ga0495661_0100436 3300046665 Bacteria 1629
82 Ga0495670_0002620 3300046691 Bacteria 8883
83 Ga0495671_0165454 3300046692 Bacteria 1076
84 Ga0495589_0110337 3300046794 Bacteria 1328
85 Ga0495589_0145439 3300046794 Bacteria 1133
86 Ga0495660_0233446 3300046810 Bacteria 861
87 Ga0495672_0089402 3300047320 Bacteria 1695
88 Ga0495683_0058061 3300047323 Bacteria 1922
89 Ga0495683_0074392 3300047323 Bacteria 1665
90 Ga0495677_0049958 3300047445 Bacteria 1538
91 Ga0495677_0072385 3300047445 Bacteria 1285
92 Ga0495685_009264 3300047447 Bacteria 3284
93 Ga0495681_0097710 3300047470 Bacteria 1288
94 Ga0495626_0022782 3300048091 Bacteria 3091
95 Ga0496103_0118137 3300048906 Bacteria 1688
96 Ga0496105_0246019 3300048908 Bacteria 1450
97 Ga0496108_0126558 3300048911 Bacteria 2194
98 Ga0496109_0548672 3300048912 Bacteria 1090
99 Ga0496110_0599482 3300048913 Bacteria 999
100 Ga0496111_0250023 3300048914 Bacteria 1316
101 Ga0496118_0031169 3300048921 Bacteria 4428
102 Ga0496121_0001173 3300048924 Bacteria 45935
103 Ga0496126_0194172 3300048929 Bacteria 1718
104 Ga0496126_0295302 3300048929 Bacteria 1339
105 Ga0495682_0003994 3300049460 Bacteria 6427
106 Ga0501034_0000355 3300049571 Bacteria 78528
107 Ga0501042_0169794 3300049578 Bacteria 1574
108 Ga0501043_0373387 3300049579 Bacteria 1081
109 Ga0501047_0019112 3300049581 Bacteria 6574
110 Ga0501069_0698633 3300049585 Bacteria 612
111 Ga0501071_0061641 3300049587 Bacteria 2717
112 Ga0501074_0635203 3300049590 Bacteria 754
113 Ga0501075_0929671 3300049591 Bacteria 661
114 Ga0501076_0084606 3300049592 Bacteria 2548
115 Ga0501076_0179711 3300049592 Bacteria 1725
116 Ga0501077_0256688 3300049593 Bacteria 1112
117 Ga0501079_0052637 3300049741 Bacteria 3142
118 Ga0501080_0130522 3300049742 Bacteria 2326
119 Ga0501080_0674885 3300049742 Bacteria 913
120 Ga0501081_0172991 3300049743 Bacteria 1560
121 Ga0501083_0126899 3300049744 Bacteria 1672
122 Ga0501083_0140526 3300049744 Bacteria 1581
123 Ga0501035_0091931 3300049822 Bacteria 2670
124 Ga0501044_0130075 3300049823 Bacteria 2512
125 nmdc:mga0n895_263845_c1 3300050512 Bacteria 1747
126 Ga0500595_030893 3300053119 Bacteria 1800
127 Ga0500595_129296 3300053119 Bacteria 711
128 Ga0501084_0222542 3300054114 Bacteria 1592
129 Ga0501084_0443585 3300054114 Bacteria 1097

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2935908558 2935911389 159
2 iso_pu_bacteria 2935916978 2935920922 159
3 iso_pu_bacteria 2935926038 2935928418 159
4 iso_pu_bacteria 2935934488 2935938063 159
5 iso_pu_bacteria 2935942939 2935945345 159
6 iso_pu_bacteria 2935951376 2935954149 159
7 iso_pu_bacteria 2935967501 2935971583 159
8 iso_pu_bacteria 2941531003 2941531831 159
9 3300025299 Ga0209256_1068071 Ga0209256_10680712 163
10 3300041498 Ga0451841_1379543 Ga0451841_1379543_110_601 163
11 3300005563 Ga0068855_101101705 Ga0068855_1011017051 166
12 3300005616 Ga0068852_100054742 Ga0068852_1000547422 166
13 3300025949 Ga0207667_11129373 Ga0207667_111293732 166
14 3300026142 Ga0207698_10245510 Ga0207698_102455102 166
15 3300031665 Ga0316575_10183174 Ga0316575_101831742 166
16 3300038443 Ga0395901_1281714 Ga0395901_1281714_76_582 166
17 3300046528 Ga0495642_0103523 Ga0495642_0103523_43_570 166
18 3300048906 Ga0496103_0118137 Ga0496103_0118137_351_854 166
19 3300048921 Ga0496118_0031169 Ga0496118_0031169_2984_3487 166
20 3300046460 Ga0495638_0003037 Ga0495638_0003037_5722_6258 169
21 3300046460 Ga0495638_0003037 Ga0495638_0003037_8219_8755 169
22 3300046474 Ga0495605_0040547 Ga0495605_0040547_136_672 169
23 3300046474 Ga0495605_0149692 Ga0495605_0149692_297_833 169
24 3300046491 Ga0495584_0000043 Ga0495584_0000043_15170_15706 169
25 3300046491 Ga0495584_0142131 Ga0495584_0142131_128_664 169
26 3300046491 Ga0495584_0178456 Ga0495584_0178456_183_719 169
27 3300046492 Ga0495585_0018521 Ga0495585_0018521_1620_2156 169
28 3300046492 Ga0495585_0058396 Ga0495585_0058396_1140_1676 169
29 3300046492 Ga0495585_0093764 Ga0495585_0093764_320_856 169
30 3300046492 Ga0495585_0167579 Ga0495585_0167579_127_663 169
31 3300046500 Ga0495596_0084567 Ga0495596_0084567_604_1140 169
32 3300046500 Ga0495596_0118479 Ga0495596_0118479_274_810 169
33 3300046501 Ga0495607_0037953 Ga0495607_0037953_1437_1973 169
34 3300046506 Ga0495583_0073830 Ga0495583_0073830_240_776 169
35 3300046506 Ga0495583_0171789 Ga0495583_0171789_49_585 169
36 3300046507 Ga0495606_0020639 Ga0495606_0020639_2096_2632 169
37 3300046507 Ga0495606_0023718 Ga0495606_0023718_931_1467 169
38 3300046507 Ga0495606_0189237 Ga0495606_0189237_241_777 169
39 3300046513 Ga0495616_0043628 Ga0495616_0043628_1520_2056 169
40 3300046513 Ga0495616_0060931 Ga0495616_0060931_955_1491 169
41 3300046515 Ga0495620_0022505 Ga0495620_0022505_722_1258 169
42 3300046518 Ga0495631_0016739 Ga0495631_0016739_1228_1764 169
43 3300046519 Ga0495632_0010909 Ga0495632_0010909_1154_1690 169
44 3300046522 Ga0495643_0079264 Ga0495643_0079264_213_749 169
45 3300046522 Ga0495643_0182596 Ga0495643_0182596_125_661 169
46 3300046523 Ga0495644_0010432 Ga0495644_0010432_2328_2864 169
47 3300046528 Ga0495642_0012090 Ga0495642_0012090_1459_1995 169
48 3300046528 Ga0495642_0127006 Ga0495642_0127006_303_839 169
49 3300046538 Ga0495609_0010728 Ga0495609_0010728_956_1492 169
50 3300046542 Ga0495597_0059573 Ga0495597_0059573_797_1333 169
51 3300046542 Ga0495597_0073364 Ga0495597_0073364_308_844 169
52 3300046616 Ga0495668_0018032 Ga0495668_0018032_2867_3403 169
53 3300046616 Ga0495668_0253844 Ga0495668_0253844_242_778 169
54 3300046648 Ga0495611_0071953 Ga0495611_0071953_518_1054 169
55 3300046660 Ga0495625_0124226 Ga0495625_0124226_957_1493 169
56 3300046665 Ga0495661_0079911 Ga0495661_0079911_704_1240 169
57 3300046665 Ga0495661_0100436 Ga0495661_0100436_287_823 169
58 3300046691 Ga0495670_0002620 Ga0495670_0002620_290_826 169
59 3300046692 Ga0495671_0165454 Ga0495671_0165454_335_871 169
60 3300046794 Ga0495589_0110337 Ga0495589_0110337_627_1163 169
61 3300046794 Ga0495589_0145439 Ga0495589_0145439_449_985 169
62 3300046810 Ga0495660_0233446 Ga0495660_0233446_242_778 169
63 3300047323 Ga0495683_0058061 Ga0495683_0058061_89_625 169
64 3300047323 Ga0495683_0074392 Ga0495683_0074392_1056_1592 169
65 3300047445 Ga0495677_0049958 Ga0495677_0049958_247_783 169
66 3300047445 Ga0495677_0072385 Ga0495677_0072385_401_937 169
67 3300047447 Ga0495685_009264 Ga0495685_009264_335_871 169
68 3300048091 Ga0495626_0022782 Ga0495626_0022782_2246_2797 169
69 3300049460 Ga0495682_0003994 Ga0495682_0003994_3346_3882 169
70 3300049460 Ga0495682_0003994 Ga0495682_0003994_849_1385 169
71 iso_pu_bacteria 2508501009 2508545689 169
72 iso_pu_bacteria 8019687851 8019695155 169
73 3300025916 Ga0207663_10776544 Ga0207663_107765441 170
74 3300009979 Ga0105032_102348 Ga0105032_1023482 171
75 iso_pu_bacteria 2904690495 2904697649 171
76 3300005467 Ga0070706_100095574 Ga0070706_1000955741 172
77 3300005471 Ga0070698_101034543 Ga0070698_1010345431 172
78 3300006173 Ga0070716_100979861 Ga0070716_1009798611 172
79 3300025910 Ga0207684_10588972 Ga0207684_105889721 172
80 3300025939 Ga0207665_11170273 Ga0207665_111702731 172
81 3300046472 Ga0495580_0073633 Ga0495580_0073633_915_1433 172
82 3300049581 Ga0501047_0019112 Ga0501047_0019112_5584_6114 172
83 3300049590 Ga0501074_0635203 Ga0501074_0635203_129_659 172
84 3300049742 Ga0501080_0130522 Ga0501080_0130522_1770_2300 172
85 3300049822 Ga0501035_0091931 Ga0501035_0091931_1768_2298 172
86 3300049823 Ga0501044_0130075 Ga0501044_0130075_1923_2453 172
87 3300031728 Ga0316578_10402602 Ga0316578_104026021 173
88 3300031733 Ga0316577_10026062 Ga0316577_100260622 173
89 3300036712 Ga0316584_0020259 Ga0316584_0020259_2152_2682 173
90 3300037418 Ga0395900_1174093 Ga0395900_1174093_53_652 173
91 3300037471 Ga0395905_0941225 Ga0395905_0941225_126_725 173
92 3300048929 Ga0496126_0295302 Ga0496126_0295302_506_1027 173
93 3300053119 Ga0500595_030893 Ga0500595_030893_606_1127 173
94 3300005983 Ga0081540_1000593 Ga0081540_10005932 174
95 3300048908 Ga0496105_0246019 Ga0496105_0246019_329_862 174
96 3300048911 Ga0496108_0126558 Ga0496108_0126558_459_992 174
97 3300048912 Ga0496109_0548672 Ga0496109_0548672_307_840 174
98 3300048913 Ga0496110_0599482 Ga0496110_0599482_421_954 174
99 3300048914 Ga0496111_0250023 Ga0496111_0250023_744_1277 174
100 3300049571 Ga0501034_0000355 Ga0501034_0000355_61000_61533 174
101 3300049579 Ga0501043_0373387 Ga0501043_0373387_479_1006 174
102 3300049592 Ga0501076_0179711 Ga0501076_0179711_1117_1644 174
103 3300005435 Ga0070714_100699765 Ga0070714_1006997652 175
104 3300005530 Ga0070679_100542396 Ga0070679_1005423961 175
105 3300005937 Ga0081455_10000875 Ga0081455_1000087519 175
106 3300005981 Ga0081538_10179397 Ga0081538_101793971 175
107 3300005983 Ga0081540_1026883 Ga0081540_10268834 175
108 3300006028 Ga0070717_11013946 Ga0070717_110139461 175
109 3300006163 Ga0070715_10064822 Ga0070715_100648222 175
110 3300007788 Ga0099795_10067684 Ga0099795_100676842 175
111 3300013308 Ga0157375_10345747 Ga0157375_103457472 175
112 3300025929 Ga0207664_11045902 Ga0207664_110459021 175
113 3300037466 Ga0395898_0109396 Ga0395898_0109396_1782_2327 175
114 3300039438 Ga0436360_0170334 Ga0436360_0170334_90_617 175
115 3300039438 Ga0436360_1363056 Ga0436360_1363056_227_757 175
116 3300039447 Ga0436361_0928899 Ga0436361_0928899_157_684 175
117 3300039453 Ga0436362_1007913 Ga0436362_1007913_10_540 175
118 3300041408 Ga0439453_0114325 Ga0439453_0114325_69_599 175
119 3300042005 Ga0439448_0107545 Ga0439448_0107545_320_850 175
120 3300046477 Ga0495664_0021153 Ga0495664_0021153_397_927 175
121 3300046499 Ga0495594_0213239 Ga0495594_0213239_495_1025 175
122 3300047320 Ga0495672_0089402 Ga0495672_0089402_121_648 175
123 3300048924 Ga0496121_0001173 Ga0496121_0001173_24679_25206 175
124 3300049578 Ga0501042_0169794 Ga0501042_0169794_236_766 175
125 3300049585 Ga0501069_0698633 Ga0501069_0698633_22_552 175
126 3300049587 Ga0501071_0061641 Ga0501071_0061641_520_1050 175
127 3300049591 Ga0501075_0929671 Ga0501075_0929671_111_638 175
128 3300049592 Ga0501076_0084606 Ga0501076_0084606_1783_2313 175
129 3300049593 Ga0501077_0256688 Ga0501077_0256688_226_756 175
130 3300049741 Ga0501079_0052637 Ga0501079_0052637_1351_1881 175
131 3300049742 Ga0501080_0674885 Ga0501080_0674885_119_649 175
132 3300049743 Ga0501081_0172991 Ga0501081_0172991_921_1451 175
133 3300049744 Ga0501083_0126899 Ga0501083_0126899_318_851 175
134 3300049744 Ga0501083_0140526 Ga0501083_0140526_328_858 175
135 3300050512 nmdc:mga0n895_263845_c1 nmdc:mga0n895_263845_c1_963_1493 175
136 3300054114 Ga0501084_0222542 Ga0501084_0222542_91_621 175
137 3300054114 Ga0501084_0443585 Ga0501084_0443585_376_906 175
138 3300035691 Ga0373931_0301470 Ga0373931_0301470_157_696 179
139 3300047470 Ga0495681_0097710 Ga0495681_0097710_476_1018 179
140 3300053119 Ga0500595_129296 Ga0500595_129296_63_605 180
141 3300003659 JGI25404J52841_10029660 JGI25404J52841_100296602 185
142 3300048929 Ga0496126_0194172 Ga0496126_0194172_124_705 185

Structural Annotation

Top 5 Hits

ID Description Score Start End
4er8-assembly1.cif.gz_A structure of the rep associates tyrosine transposase bound to a rep hairpin 0.8611 14 180
4er8-assembly1.cif.gz_A structure of the rep associates tyrosine transposase bound to a rep hairpin 0.805 14 180
2a6o-assembly1.cif.gz_A crystal structure of the ishp608 transposase in complex with stem-loop dna 0.6948 22 136
2xma-assembly1.cif.gz_B deinococcus radiodurans isdra2 transposase right end dna complex 0.6828 22 137
6ogy-assembly1.cif.gz_A in situ structure of rotavirus rna-dependent rna polymerase at duplex-open state 0.682 37 96
ID Description Score Start End Superfamily
4er8A00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Transposase IS200-like 0.8611 14 180 3.30.70.1290
4er8A00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Transposase IS200-like 0.805 14 180 3.30.70.1290
2vjvB00 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Transposase IS200-like 0.7499 21 128 3.30.70.1290
3ab4J01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;ACT domain 0.7094 45 75 3.30.70.260
2a6mB01 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Transposase IS200-like 0.6963 21 136 3.30.70.1290
ID Description Score Start End GO Terms
AF-A0A290TI02-F1-model_v4 deleted 0.9292 39 175
AF-A0A2R8B349-F1-model_v4 REP-associated tyrosine transposase 0.9223 25 164 GO:0004803
GO:0006313
GO:0043565
AF-A0A811ADT7-F1-model_v4 deleted 0.9161 29 185
AF-A0A290TI02-F1-model_v4 deleted 0.9097 39 175
AF-A0A1G9K503-F1-model_v4 Putative transposase 0.9078 16 161 GO:0004803
GO:0006313
GO:0043565

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pLDDT pTM Quality
82.66 0.78 High
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Predicted Structure (AlphaFold2)

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