F186388

General Info

Members Datasets Scaffolds Average Seq Length
142 102 138 289

Family's Representative Sequence

Representative Sequence 3300037418|Ga0395900_0453489|Ga0395900_0453489_255_1214
Length 319
Sequence MSAERLDCRAKPGNDNLRGTQTAGAIPDMNHPPFLFCFGLGYTALALAEALRAEGWRIAGTCRTAEQQAALAARGITAHLLEHGRPLADPAAAFAGVTHILSSVPPDAAGDPVLDAHAADLARLSGLAWVGYLSTTGVYGDRAGGWVDEASALEPTGERGRRRLAAERGWLALWQHHGLPVHLFRLAGIYGPGRNALESLRDGTAKRIVKPGQVFSRIHVDDIVQVLRASMARPNPGAAYNVCDDNPAPPAAVVEYAADLLGIAPPPAVPFDQAELSAMARSFYEDNKRVRNDRIKRELGVRLRHPDYRAGLQALLARC

Samples

Sample ID Description Type Environment
1 2842333319 Skermanella aerolata SEMIA 4010 Isolate Nodule
2 2883291878 Hypericibacter terrae R5913 Isolate Rhizosphere
3 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
4 3000017691 Rhodobacteraceae bacterium GH2-2 Isolate Rhizosphere
5 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
6 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
12 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
13 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
14 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
15 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
18 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
19 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
20 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
23 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
24 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
25 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
26 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
28 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
29 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
30 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
31 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
32 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
35 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
37 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
38 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
39 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
40 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
41 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
42 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
43 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
44 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
45 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
46 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
47 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
48 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
49 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
50 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
51 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
52 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
53 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
54 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
55 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
56 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
57 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
58 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
59 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
60 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
61 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
62 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
63 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
64 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
65 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
66 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
67 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
68 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
69 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
70 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
71 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
72 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
73 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
74 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
75 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
76 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
77 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
78 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
79 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
81 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
82 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
83 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
84 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
85 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
86 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
87 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
88 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
89 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
90 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
91 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
92 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
93 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
94 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
95 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
96 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
97 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
98 3300053731 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 endosphere Metagenome Endosphere
99 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
100 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
101 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
102 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.18
Metatranscriptomes 0
Isolates 2.82

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 25.35
Nodule 0.7
Rhizoplane 0
Rhizosphere 69.72
Stem 0
Stem Tuber 0
Unclassified 4.23

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10000049 3300003215 Bacteria 141434
2 Ga0055531_10016927 3300003794 Bacteria 3111
3 Ga0070669_100059589 3300005353 Bacteria 2803
4 Ga0070674_100010640 3300005356 Bacteria 5572
5 Ga0070711_100050753 3300005439 Bacteria 2846
6 Ga0070681_10034315 3300005458 Bacteria 5094
7 Ga0070706_100016282 3300005467 Bacteria 6870
8 Ga0070699_100201207 3300005518 Bacteria 1771
9 Ga0068861_100009504 3300005719 Bacteria 6718
10 Ga0068862_100104076 3300005844 Bacteria 2486
11 Ga0081538_10009762 3300005981 Bacteria 7949
12 Ga0081539_10072631 3300005985 Bacteria 1838
13 Ga0075364_10001106 3300006051 Bacteria 14419
14 Ga0075428_100178678 3300006844 Bacteria 2298
15 Ga0075431_100261631 3300006847 Bacteria 1755
16 Ga0111539_10003803 3300009094 Bacteria 19856
17 Ga0114129_10405790 3300009147 Bacteria 1795
18 Ga0105243_10158975 3300009148 Bacteria 1946
19 Ga0105249_10220388 3300009553 Bacteria 1866
20 Ga0157380_10339347 3300014326 Bacteria 1401
21 Ga0209148_1000408 3300025254 Bacteria 49722
22 Ga0209455_1000225 3300025272 Bacteria 76514
23 Ga0209676_1000019 3300025292 Bacteria 620012
24 Ga0209758_1000029 3300025297 Bacteria 520787
25 Ga0209758_1031501 3300025297 Bacteria 2173
26 Ga0209050_1003632 3300025298 Bacteria 11162
27 Ga0209050_1015915 3300025298 Bacteria 3117
28 Ga0207426_1025060 3300025302 Bacteria 2014
29 Ga0209257_1000418 3300025304 Bacteria 82230
30 Ga0209257_1021444 3300025304 Bacteria 2345
31 Ga0207707_10014937 3300025912 Bacteria 6761
32 Ga0207675_100006475 3300026118 Bacteria 11082
33 Ga0207675_100285290 3300026118 Bacteria 1605
34 Ga0207428_10000053 3300027907 Bacteria 175238
35 Ga0268265_10012673 3300028380 Bacteria 5720
36 Ga0268265_10273842 3300028380 Bacteria 1507
37 Ga0307515_10167351 3300028794 Bacteria 2209
38 Ga0265327_10024330 3300031251 Bacteria 3562
39 Ga0265316_10016527 3300031344 Bacteria 6395
40 Ga0265316_10096357 3300031344 Bacteria 2253
41 Ga0265316_10162467 3300031344 Bacteria 1669
42 Ga0307513_10132948 3300031456 Bacteria 2430
43 Ga0307513_10186518 3300031456 Bacteria 1931
44 Ga0307509_10319560 3300031507 Bacteria 1290
45 Ga0307408_100097211 3300031548 Bacteria 2236
46 Ga0307508_10070266 3300031616 Bacteria 3074
47 Ga0316576_10182046 3300031727 Bacteria 1585
48 Ga0307405_10325403 3300031731 Bacteria 1176
49 Ga0307413_10116797 3300031824 Bacteria 1798
50 Ga0307410_10097022 3300031852 Bacteria 2105
51 Ga0307407_10094339 3300031903 Bacteria 1842
52 Ga0307409_100053883 3300031995 Bacteria 3094
53 Ga0307416_100497107 3300032002 Bacteria 1283
54 Ga0316584_0058756 3300036712 Bacteria 2879
55 Ga0395900_0453489 3300037418 Bacteria 1238
56 Ga0451577_0145200 3300042876 Bacteria 2133
57 Ga0453684_0020194 3300044712 Bacteria 10075
58 Ga0451576_0034330 3300045051 Bacteria 5388
59 Ga0451576_0285547 3300045051 Bacteria 1725
60 Ga0495638_0159963 3300046460 Bacteria 1300
61 Ga0495686_0134705 3300047472 Bacteria 1462
62 Ga0495686_0162919 3300047472 Bacteria 1302
63 Ga0496119_0095783 3300048922 Bacteria 1676
64 Ga0501031_0087566 3300049568 Bacteria 2031
65 Ga0501032_0019865 3300049569 Bacteria 4690
66 Ga0501033_0032987 3300049570 Bacteria 3888
67 Ga0501034_0037153 3300049571 Bacteria 4931
68 Ga0501034_0262589 3300049571 Bacteria 1669
69 Ga0501036_0036509 3300049572 Bacteria 4159
70 Ga0501037_0006626 3300049573 Bacteria 8469
71 Ga0501038_0004128 3300049574 Bacteria 13515
72 Ga0501038_0084404 3300049574 Bacteria 2672
73 Ga0501038_0088588 3300049574 Bacteria 2598
74 Ga0501039_0008280 3300049575 Bacteria 7925
75 Ga0501039_0527470 3300049575 Bacteria 927
76 Ga0501043_0016967 3300049579 Bacteria 5708
77 Ga0501043_0027886 3300049579 Bacteria 4432
78 Ga0501043_0193604 3300049579 Bacteria 1581
79 Ga0501046_0003446 3300049580 Bacteria 14512
80 Ga0501047_0009816 3300049581 Bacteria 9045
81 Ga0501047_0057256 3300049581 Bacteria 3769
82 Ga0501048_0085309 3300049582 Bacteria 2227
83 Ga0501067_0018335 3300049583 Bacteria 3877
84 Ga0501067_0054061 3300049583 Bacteria 2225
85 Ga0501068_0013266 3300049584 Bacteria 4686
86 Ga0501068_0030934 3300049584 Bacteria 3178
87 Ga0501069_0007276 3300049585 Bacteria 5806
88 Ga0501070_0046185 3300049586 Bacteria 3621
89 Ga0501071_0319626 3300049587 Bacteria 1179
90 Ga0501073_0024683 3300049589 Bacteria 4316
91 Ga0501073_0030573 3300049589 Bacteria 3844
92 Ga0501073_0082751 3300049589 Bacteria 2233
93 Ga0501073_0171845 3300049589 Bacteria 1500
94 Ga0501074_0005723 3300049590 Bacteria 8962
95 Ga0501080_0020776 3300049742 Bacteria 6079
96 Ga0501080_0030982 3300049742 Bacteria 4984
97 Ga0501080_0046622 3300049742 Bacteria 4034
98 Ga0501080_0063055 3300049742 Bacteria 3449
99 Ga0501083_0009061 3300049744 Bacteria 7026
100 Ga0501083_0046822 3300049744 Bacteria 2923
101 Ga0501083_0055507 3300049744 Bacteria 2655
102 Ga0501035_0035166 3300049822 Bacteria 4547
103 Ga0501035_0159246 3300049822 Bacteria 1955
104 Ga0501044_0019415 3300049823 Bacteria 7272
105 Ga0501044_0043645 3300049823 Bacteria 4657
106 Ga0501044_0138681 3300049823 Bacteria 2421
107 nmdc:mga00v17_148_c1 3300050491 Bacteria 40605
108 nmdc:mga05p37_190427_c1 3300050507 Bacteria 2491
109 nmdc:mga06r32_250095_c1 3300050510 Bacteria 1760
110 nmdc:mga08y16_30_c1 3300050511 Bacteria 197110
111 Ga0500578_0092292 3300053086 Bacteria 1921
112 Ga0500641_0004409 3300053096 Bacteria 4977
113 Ga0500555_000598 3300053103 Bacteria 14049
114 Ga0500555_000906 3300053103 Bacteria 10517
115 Ga0500594_0009272 3300053118 Bacteria 2263
116 Ga0500594_0035054 3300053118 Bacteria 1344
117 Ga0500595_000373 3300053119 Bacteria 28891
118 Ga0500642_0000504 3300053130 Bacteria 11956
119 Ga0500642_0001679 3300053130 Bacteria 6390
120 Ga0500652_046525 3300053131 Bacteria 1761
121 Ga0500658_0028191 3300053134 Bacteria 2177
122 Ga0500658_0051697 3300053134 Bacteria 1681
123 Ga0500658_0165697 3300053134 Bacteria 1002
124 Ga0500568_0032008 3300053139 Bacteria 2164
125 Ga0500577_0096184 3300053142 Bacteria 1204
126 Ga0500588_0000110 3300053146 Bacteria 10710
127 Ga0500588_0045515 3300053146 Bacteria 1344
128 Ga0500604_0000412 3300053151 Bacteria 11755
129 Ga0500604_0003762 3300053151 Bacteria 4060
130 Ga0500616_0000566 3300053153 Bacteria 45261
131 Ga0500616_0012243 3300053153 Bacteria 5022
132 Ga0500609_000293 3300053731 Bacteria 7369
133 Ga0501084_0077192 3300054114 Bacteria 2793
134 Ga0501084_0120835 3300054114 Bacteria 2203
135 Ga0590071_043657 3300059421 Bacteria 1080
136 Ga0501082_0038528 3300060353 Bacteria 4124
137 Ga0501082_0371242 3300060353 Bacteria 1248
138 Ga0530510_0165646 3300061734 Bacteria 1636

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053134 Ga0500658_0165697 Ga0500658_0165697_12_746 244
2 3300049575 Ga0501039_0527470 Ga0501039_0527470_12_794 260
3 3300005356 Ga0070674_100010640 Ga0070674_1000106402 263
4 3300005719 Ga0068861_100009504 Ga0068861_1000095047 263
5 3300005981 Ga0081538_10009762 Ga0081538_100097622 263
6 3300006844 Ga0075428_100178678 Ga0075428_1001786782 263
7 3300006847 Ga0075431_100261631 Ga0075431_1002616311 263
8 3300009147 Ga0114129_10405790 Ga0114129_104057902 263
9 3300009553 Ga0105249_10220388 Ga0105249_102203882 263
10 3300026118 Ga0207675_100006475 Ga0207675_1000064758 263
11 3300026118 Ga0207675_100285290 Ga0207675_1002852902 263
12 3300028380 Ga0268265_10273842 Ga0268265_102738422 263
13 3300031548 Ga0307408_100097211 Ga0307408_1000972112 263
14 3300031731 Ga0307405_10325403 Ga0307405_103254031 263
15 3300031824 Ga0307413_10116797 Ga0307413_101167972 263
16 3300031852 Ga0307410_10097022 Ga0307410_100970221 263
17 3300031903 Ga0307407_10094339 Ga0307407_100943392 263
18 3300031995 Ga0307409_100053883 Ga0307409_1000538833 263
19 3300032002 Ga0307416_100497107 Ga0307416_1004971072 263
20 3300047472 Ga0495686_0134705 Ga0495686_0134705_348_1157 263
21 3300050507 nmdc:mga05p37_190427_c1 nmdc:mga05p37_190427_c1_716_1576 263
22 3300050510 nmdc:mga06r32_250095_c1 nmdc:mga06r32_250095_c1_409_1269 263
23 3300059421 Ga0590071_043657 Ga0590071_043657_98_958 263
24 3300009094 Ga0111539_10003803 Ga0111539_1000380310 264
25 3300027907 Ga0207428_10000053 Ga0207428_10000053155 264
26 3300045051 Ga0451576_0285547 Ga0451576_0285547_843_1706 264
27 3300050511 nmdc:mga08y16_30_c1 nmdc:mga08y16_30_c1_63102_63965 264
28 3300053153 Ga0500616_0012243 Ga0500616_0012243_199_1032 272
29 3300006051 Ga0075364_10001106 Ga0075364_100011067 274
30 3300050491 nmdc:mga00v17_148_c1 nmdc:mga00v17_148_c1_2118_3068 274
31 3300025292 Ga0209676_1000019 Ga0209676_1000019465 277
32 3300025298 Ga0209050_1015915 Ga0209050_10159153 277
33 3300042876 Ga0451577_0145200 Ga0451577_0145200_17_859 278
34 3300044712 Ga0453684_0020194 Ga0453684_0020194_3934_4773 278
35 3300045051 Ga0451576_0034330 Ga0451576_0034330_1032_1874 278
36 iso_pu_bacteria 3000017691 3000019760 279
37 3300048922 Ga0496119_0095783 Ga0496119_0095783_719_1567 282
38 3300005353 Ga0070669_100059589 Ga0070669_1000595892 283
39 3300009148 Ga0105243_10158975 Ga0105243_101589752 283
40 3300053103 Ga0500555_000598 Ga0500555_000598_5220_6089 283
41 3300005458 Ga0070681_10034315 Ga0070681_100343152 285
42 3300025912 Ga0207707_10014937 Ga0207707_100149373 285
43 3300031507 Ga0307509_10319560 Ga0307509_103195602 285
44 3300049574 Ga0501038_0088588 Ga0501038_0088588_763_1647 285
45 3300031251 Ga0265327_10024330 Ga0265327_100243301 286
46 3300031344 Ga0265316_10096357 Ga0265316_100963572 286
47 3300031727 Ga0316576_10182046 Ga0316576_101820462 286
48 3300037418 Ga0395900_0453489 Ga0395900_0453489_255_1214 287
49 iso_pu_bacteria 2842333319 2842336579 287
50 3300005439 Ga0070711_100050753 Ga0070711_1000507532 288
51 3300005467 Ga0070706_100016282 Ga0070706_1000162826 288
52 3300005518 Ga0070699_100201207 Ga0070699_1002012072 288
53 3300025254 Ga0209148_1000408 Ga0209148_100040848 288
54 3300025272 Ga0209455_1000225 Ga0209455_100022562 288
55 3300036712 Ga0316584_0058756 Ga0316584_0058756_802_1683 288
56 3300049579 Ga0501043_0193604 Ga0501043_0193604_567_1517 288
57 3300053130 Ga0500642_0000504 Ga0500642_0000504_10828_11718 288
58 3300003794 Ga0055531_10016927 Ga0055531_100169273 289
59 3300005844 Ga0068862_100104076 Ga0068862_1001040762 289
60 3300005985 Ga0081539_10072631 Ga0081539_100726312 289
61 3300014326 Ga0157380_10339347 Ga0157380_103393471 289
62 3300025297 Ga0209758_1031501 Ga0209758_10315012 289
63 3300025298 Ga0209050_1003632 Ga0209050_10036325 289
64 3300025302 Ga0207426_1025060 Ga0207426_10250602 289
65 3300025304 Ga0209257_1000418 Ga0209257_100041814 289
66 3300025304 Ga0209257_1021444 Ga0209257_10214443 289
67 3300028380 Ga0268265_10012673 Ga0268265_100126733 289
68 3300028794 Ga0307515_10167351 Ga0307515_101673512 289
69 3300031344 Ga0265316_10016527 Ga0265316_100165272 289
70 3300031344 Ga0265316_10162467 Ga0265316_101624672 289
71 3300031456 Ga0307513_10132948 Ga0307513_101329482 289
72 3300031456 Ga0307513_10186518 Ga0307513_101865181 289
73 3300031616 Ga0307508_10070266 Ga0307508_100702662 289
74 3300046460 Ga0495638_0159963 Ga0495638_0159963_74_958 289
75 3300049568 Ga0501031_0087566 Ga0501031_0087566_17_898 289
76 3300049569 Ga0501032_0019865 Ga0501032_0019865_1608_2489 289
77 3300049570 Ga0501033_0032987 Ga0501033_0032987_547_1428 289
78 3300049571 Ga0501034_0037153 Ga0501034_0037153_168_1049 289
79 3300049571 Ga0501034_0262589 Ga0501034_0262589_597_1466 289
80 3300049572 Ga0501036_0036509 Ga0501036_0036509_1462_2343 289
81 3300049573 Ga0501037_0006626 Ga0501037_0006626_2736_3617 289
82 3300049574 Ga0501038_0004128 Ga0501038_0004128_7036_7917 289
83 3300049574 Ga0501038_0084404 Ga0501038_0084404_1386_2255 289
84 3300049575 Ga0501039_0008280 Ga0501039_0008280_6877_7758 289
85 3300049579 Ga0501043_0016967 Ga0501043_0016967_154_1023 289
86 3300049579 Ga0501043_0027886 Ga0501043_0027886_1221_2102 289
87 3300049580 Ga0501046_0003446 Ga0501046_0003446_12508_13389 289
88 3300049581 Ga0501047_0009816 Ga0501047_0009816_3048_3917 289
89 3300049581 Ga0501047_0057256 Ga0501047_0057256_1543_2424 289
90 3300049582 Ga0501048_0085309 Ga0501048_0085309_1115_1996 289
91 3300049583 Ga0501067_0018335 Ga0501067_0018335_1923_2804 289
92 3300049583 Ga0501067_0054061 Ga0501067_0054061_1330_2199 289
93 3300049584 Ga0501068_0013266 Ga0501068_0013266_3366_4247 289
94 3300049584 Ga0501068_0030934 Ga0501068_0030934_1344_2213 289
95 3300049585 Ga0501069_0007276 Ga0501069_0007276_1173_2054 289
96 3300049586 Ga0501070_0046185 Ga0501070_0046185_1409_2290 289
97 3300049587 Ga0501071_0319626 Ga0501071_0319626_41_910 289
98 3300049589 Ga0501073_0024683 Ga0501073_0024683_2067_2936 289
99 3300049589 Ga0501073_0030573 Ga0501073_0030573_2093_2974 289
100 3300049589 Ga0501073_0082751 Ga0501073_0082751_1090_2031 289
101 3300049589 Ga0501073_0171845 Ga0501073_0171845_519_1403 289
102 3300049590 Ga0501074_0005723 Ga0501074_0005723_1350_2231 289
103 3300049742 Ga0501080_0020776 Ga0501080_0020776_2602_3471 289
104 3300049742 Ga0501080_0030982 Ga0501080_0030982_2133_3074 289
105 3300049742 Ga0501080_0046622 Ga0501080_0046622_1446_2378 289
106 3300049742 Ga0501080_0063055 Ga0501080_0063055_383_1264 289
107 3300049744 Ga0501083_0009061 Ga0501083_0009061_2687_3619 289
108 3300049744 Ga0501083_0046822 Ga0501083_0046822_40_921 289
109 3300049744 Ga0501083_0055507 Ga0501083_0055507_1365_2306 289
110 3300049822 Ga0501035_0035166 Ga0501035_0035166_1404_2285 289
111 3300049822 Ga0501035_0159246 Ga0501035_0159246_1024_1893 289
112 3300049823 Ga0501044_0019415 Ga0501044_0019415_2602_3471 289
113 3300049823 Ga0501044_0043645 Ga0501044_0043645_1318_2199 289
114 3300049823 Ga0501044_0138681 Ga0501044_0138681_1160_2029 289
115 3300053086 Ga0500578_0092292 Ga0500578_0092292_314_1183 289
116 3300053096 Ga0500641_0004409 Ga0500641_0004409_3621_4490 289
117 3300053103 Ga0500555_000906 Ga0500555_000906_8791_9675 289
118 3300053118 Ga0500594_0009272 Ga0500594_0009272_1018_1920 289
119 3300053118 Ga0500594_0035054 Ga0500594_0035054_437_1306 289
120 3300053119 Ga0500595_000373 Ga0500595_000373_20741_21610 289
121 3300053130 Ga0500642_0001679 Ga0500642_0001679_930_1799 289
122 3300053131 Ga0500652_046525 Ga0500652_046525_472_1356 289
123 3300053134 Ga0500658_0028191 Ga0500658_0028191_355_1224 289
124 3300053139 Ga0500568_0032008 Ga0500568_0032008_1235_2104 289
125 3300053142 Ga0500577_0096184 Ga0500577_0096184_70_939 289
126 3300053146 Ga0500588_0000110 Ga0500588_0000110_4706_5575 289
127 3300053146 Ga0500588_0045515 Ga0500588_0045515_105_974 289
128 3300053151 Ga0500604_0000412 Ga0500604_0000412_4838_5707 289
129 3300053151 Ga0500604_0003762 Ga0500604_0003762_2712_3581 289
130 3300053153 Ga0500616_0000566 Ga0500616_0000566_37668_38537 289
131 3300053731 Ga0500609_000293 Ga0500609_000293_5365_6234 289
132 3300054114 Ga0501084_0077192 Ga0501084_0077192_1349_2230 289
133 3300054114 Ga0501084_0120835 Ga0501084_0120835_17_949 289
134 3300060353 Ga0501082_0038528 Ga0501082_0038528_3076_3957 289
135 3300060353 Ga0501082_0371242 Ga0501082_0371242_69_1001 289
136 3300061734 Ga0530510_0165646 Ga0530510_0165646_413_1294 289
137 iso_pu_bacteria 2883291878 2883292083 289
138 iso_pu_bacteria 2883354860 2883355094 289
139 3300003215 JGI25153J46596_10000049 JGI25153J46596_1000004945 291
140 3300025297 Ga0209758_1000029 Ga0209758_1000029203 291
141 3300047472 Ga0495686_0162919 Ga0495686_0162919_117_1016 291
142 3300053134 Ga0500658_0051697 Ga0500658_0051697_469_1350 291

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

39

243

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
3ius-assembly2.cif.gz_B the structure of a functionally unknown conserved protein from silicibacter pomeroyi dss 0.9461 5 291
3ius-assembly1.cif.gz_A the structure of a functionally unknown conserved protein from silicibacter pomeroyi dss 0.9424 5 289
3ius-assembly2.cif.gz_B the structure of a functionally unknown conserved protein from silicibacter pomeroyi dss 0.9361 5 291
3ius-assembly1.cif.gz_A the structure of a functionally unknown conserved protein from silicibacter pomeroyi dss 0.9262 5 289
3gpi-assembly1.cif.gz_A structure of putative nad-dependent epimerase/dehydratase from methylobacillus flagellatus 0.8049 2 291
ID Description Score Start End Superfamily
3iusB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9432 5 291 3.40.50.720
3iusB00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9331 5 291 3.40.50.720
af_B4F8E5_18_318_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.854 3 289 3.40.50.720
af_K7M5D4_27_313_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8405 1 275 3.40.50.720
af_B4F8E5_18_318_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8399 3 289 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A7Y8MAU9-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9765 95 289
AF-A0A849ECK4-F1-model_v4 SDR family oxidoreductase 0.9735 67 286
AF-A0A3D0UX43-F1-model_v4 deleted 0.9716 112 290
AF-A0A257GN67-F1-model_v4 NAD(P)-dependent oxidoreductase 0.9706 5 287
AF-M4C6S8-F1-model_v4 NAD-dependent epimerase/dehydratase domain-containing protein 0.97 63 290

Feature Viewer

pLDDT pTM Quality
93.63 0.92 High
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Predicted Structure (AlphaFold2)

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