F185795

General Info

Members Datasets Scaffolds Average Seq Length
142 118 121 233

Family's Representative Sequence

Representative Sequence 3300014968|Ga0157379_10119982|Ga0157379_101199822
Length 263
Sequence MSESTYAKASVDGPLAEGGLPPEASAQGGASAFAAASADKVILSSRGLSKIYRQGGQEIAVLQGVDLDVKRGEMVAVVGASGSGKSTLLHLLGGLDAPTGGSVQVAGQRLDTLDERARGELRNRALGFVYQFHHLLAEFTALENVAMPLLIRRMPEAEAHATAAKMLEQVGLAARLTHTPGELSGGERQRAALARALVTGPACVLADEPTGNLDRQTAAQVFDLMLDLNRRFATSFIIVTHEPGLAARANRVLRLADGVLRAE

Samples

Sample ID Description Type Environment
1 2547132512 Azospira oryzae 6a3 Isolate Unclassified
2 2600254954 Pseudomonas sp. NFACC19-2 Isolate Rhizoplane
3 2600255389 Pseudomonas sp. NFPP33 Isolate Rhizoplane
4 2687453129 Halotalea alkalilenta IHB B 13600 Isolate Unclassified
5 2690316117 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
6 2738541271 Pseudomonas sp. GV021 Isolate Unclassified
7 2738543016 Pseudomonas sp. GV012 Isolate Unclassified
8 2823421272 Pseudomonas mendocina S5.2 Isolate Rhizoplane
9 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
10 2847417321 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
11 2896384573 Ensifer sp. MPMI2T Isolate Unclassified
12 2919493220 Aeromonas salmonicida salmonicida 3466 Isolate Unclassified
13 2919501602 Pseudomonas alcaliphila 3512 Isolate Unclassified
14 2919543075 Aeromonas salmonicida masoucida 4076 Isolate Unclassified
15 2920760137 Ensifer psoraleae CCBAU 65732 Isolate Unclassified
16 2923525760 Aeromonas caviae SLBN-129 Isolate Rhizosphere
17 2926063275 Pseudomonas sp. 3400 Isolate Unclassified
18 3007315729 Pseudomonas argentinensis SA190 Isolate Unclassified
19 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
20 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
21 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
22 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
23 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
24 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
25 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
26 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
27 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
30 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
31 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
32 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
33 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
34 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
41 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
42 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
43 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
44 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
45 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
46 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
47 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300027360 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes) (version 2) Metagenome Rhizosphere
55 3300027364 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes) (version 2) Metagenome Rhizosphere
56 3300027395 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027462 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027543 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027614 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) Metagenome Rhizosphere
60 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
61 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
62 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
63 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
64 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
65 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
66 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
67 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
68 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
69 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
70 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
71 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
72 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
73 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
74 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
75 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
76 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
77 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
78 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
79 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
80 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
81 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
82 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
83 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
84 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
85 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
86 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
87 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
88 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
89 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
90 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
91 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
92 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
93 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
94 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
95 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
96 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
97 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
98 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
99 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
100 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
101 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
102 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
103 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
104 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
105 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
106 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
110 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
111 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
112 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
113 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
114 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
115 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
116 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
117 640427133 Stutzerimonas stutzeri A1501 Isolate Rhizosphere
118 651053060 Stutzerimonas stutzeri CMT.A.9 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.8
Metatranscriptomes 1.41
Isolates 14.79

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.23
Nodule 0
Rhizoplane 2.11
Rhizosphere 73.24
Stem 0
Stem Tuber 0
Unclassified 20.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10003808 3300005327 Bacteria 12356
2 Ga0070680_100008241 3300005336 Bacteria 7969
3 Ga0070667_100122739 3300005367 Bacteria 2261
4 Ga0070678_100192885 3300005456 Bacteria 1676
5 Ga0070697_100091819 3300005536 Bacteria 2511
6 Ga0070686_100455645 3300005544 Bacteria 984
7 Ga0070696_100128005 3300005546 Bacteria 1845
8 Ga0070665_100137115 3300005548 Bacteria 2450
9 Ga0070704_100134827 3300005549 Bacteria 1919
10 Ga0068855_100083496 3300005563 Bacteria 3700
11 Ga0068855_100147539 3300005563 Bacteria 2676
12 Ga0068855_100375847 3300005563 Bacteria 1561
13 Ga0068856_100114244 3300005614 Bacteria 2699
14 Ga0068856_100121647 3300005614 Bacteria 2612
15 Ga0081455_10352289 3300005937 Bacteria 1038
16 Ga0075362_10018710 3300006177 Bacteria 2870
17 Ga0075367_10080676 3300006178 Bacteria 1968
18 Ga0075434_100013968 3300006871 Bacteria 7662
19 Ga0099795_10000011 3300007788 Bacteria 78558
20 Ga0105240_10406924 3300009093 Bacteria 1531
21 Ga0105248_10016450 3300009177 Bacteria 8141
22 Ga0099796_10000024 3300010159 Bacteria 38665
23 Ga0105239_10730289 3300010375 Bacteria 1133
24 Ga0157370_10000754 3300013104 Bacteria 40412
25 Ga0157369_10080864 3300013105 Bacteria 3478
26 Ga0157378_10022215 3300013297 Bacteria 5584
27 Ga0157375_10003091 3300013308 Bacteria 14450
28 Ga0157375_10372006 3300013308 Bacteria 1595
29 Ga0163163_10009958 3300014325 Bacteria 8525
30 Ga0163163_10161580 3300014325 Bacteria 2285
31 Ga0157379_10119982 3300014968 Bacteria 2365
32 Ga0213875_10001741 3300021388 Bacteria 13635
33 Ga0209050_1002647 3300025298 Bacteria 14678
34 Ga0207705_10663519 3300025909 Bacteria 811
35 Ga0207695_10396747 3300025913 Bacteria 1264
36 Ga0207660_10044209 3300025917 Bacteria 3133
37 Ga0207667_10033940 3300025949 Bacteria 5482
38 Ga0207667_10631830 3300025949 Bacteria 1078
39 Ga0207702_10373563 3300026078 Bacteria 1369
40 Ga0207641_10716837 3300026088 Bacteria 986
41 Ga0207683_10095170 3300026121 Bacteria 2655
42 Ga0209969_1001234 3300027360 Bacteria 3526
43 Ga0209967_1007112 3300027364 Bacteria 1527
44 Ga0209996_1003761 3300027395 Bacteria 1916
45 Ga0210000_1000244 3300027462 Bacteria 7725
46 Ga0209999_1003582 3300027543 Bacteria 2779
47 Ga0209970_1001523 3300027614 Bacteria 4039
48 Ga0268256_1000527 3300030500 Bacteria 31984
49 Ga0307509_10000031 3300031507 Bacteria 205072
50 Ga0307408_100000027 3300031548 Bacteria 261506
51 Ga0307514_10001111 3300031649 Bacteria 37525
52 Ga0316575_10040897 3300031665 Bacteria 1833
53 Ga0265314_10004332 3300031711 Bacteria 13234
54 Ga0316576_10026648 3300031727 Bacteria 4059
55 Ga0316593_10041126 3300032168 Bacteria 1538
56 Ga0316596_1006961 3300033541 Bacteria 2654
57 Ga0373928_0011787 3300035084 Bacteria 1736
58 Ga0373932_0045081 3300035112 Bacteria 1288
59 Ga0316574_0017353 3300035398 Bacteria 4213
60 Ga0316574_0031956 3300035398 Bacteria 3196
61 Ga0373933_0033592 3300035724 Bacteria 2985
62 Ga0316584_0132201 3300036712 Bacteria 1864
63 Ga0395898_0052475 3300037466 Bacteria 3984
64 Ga0395905_0270857 3300037471 Bacteria 1584
65 Ga0436364_0100419 3300037853 Bacteria 1402
66 Ga0436364_1179264 3300037853 Bacteria 3172
67 Ga0400488_02159 3300038741 Bacteria 2089
68 Ga0400488_10286 3300038741 Bacteria 2079
69 Ga0400483_086740 3300039062 Bacteria 3757
70 Ga0400483_154392 3300039062 Bacteria 9341
71 Ga0400489_46548 3300039093 Bacteria 2359
72 Ga0436360_0025535 3300039438 Bacteria 1416
73 Ga0436360_0633837 3300039438 Bacteria 1861
74 Ga0436360_1257086 3300039438 Bacteria 5063
75 Ga0436362_0226104 3300039453 Bacteria 2040
76 Ga0451855_1263978 3300041511 Bacteria 1339
77 Ga0439464_0000554 3300042439 Bacteria 7766
78 Ga0451577_0002516 3300042876 Bacteria 21719
79 Ga0451577_0022108 3300042876 Bacteria 5810
80 Ga0451577_0210177 3300042876 Bacteria 1758
81 Ga0453683_0001073 3300044673 Bacteria 25281
82 Ga0453684_0006001 3300044712 Bacteria 23525
83 Ga0453684_0037553 3300044712 Bacteria 6647
84 Ga0453684_0103217 3300044712 Bacteria 3484
85 Ga0453684_0500906 3300044712 Bacteria 1345
86 Ga0451576_0023546 3300045051 Bacteria 6666
87 Ga0451576_0027283 3300045051 Bacteria 6135
88 Ga0451576_0061084 3300045051 Bacteria 3931
89 Ga0451576_0937172 3300045051 Bacteria 908
90 Ga0466958_0139282 3300045836 Bacteria 1527
91 Ga0466967_0443130 3300045976 Bacteria 1268
92 Ga0495585_0005318 3300046492 Bacteria 8131
93 Ga0495607_0084134 3300046501 Bacteria 1741
94 Ga0495606_0007380 3300046507 Bacteria 9864
95 Ga0495620_0001625 3300046515 Bacteria 13297
96 Ga0495630_0210957 3300046517 Bacteria 1482
97 Ga0495637_0063942 3300046520 Bacteria 1502
98 Ga0495643_0000329 3300046522 Bacteria 65145
99 Ga0495661_0000447 3300046665 Bacteria 43687
100 Ga0495661_0250584 3300046665 Bacteria 904
101 Ga0495649_0003471 3300046694 Bacteria 10625
102 Ga0495676_0140206 3300047321 Bacteria 1733
103 Ga0495683_0000033 3300047323 Bacteria 149031
104 Ga0495673_0002025 3300047469 Bacteria 14902
105 Ga0495681_0208777 3300047470 Bacteria 788
106 Ga0496119_0007774 3300048922 Bacteria 9559
107 Ga0496122_0012117 3300048925 Bacteria 8633
108 Ga0496124_0000031 3300048927 Bacteria 344232
109 Ga0501037_0141885 3300049573 Bacteria 1719
110 Ga0501043_0539405 3300049579 Bacteria 868
111 Ga0501047_0104622 3300049581 Bacteria 2711
112 Ga0501035_0060123 3300049822 Bacteria 3383
113 Ga0501044_0002192 3300049823 Bacteria 22408
114 Ga0501044_0375418 3300049823 Bacteria 1338
115 Ga0501044_0839351 3300049823 Bacteria 796
116 nmdc:mga08y16_118012_c1 3300050511 Bacteria 2761
117 nmdc:mga0n895_43763_c1 3300050512 Bacteria 4364
118 Ga0500643_003303 3300053087 Bacteria 7832
119 Ga0500618_003475 3300053125 Bacteria 5380
120 Ga0500568_0082713 3300053139 Unclassified 1217
121 Ga0590071_028440 3300059421 Bacteria 1328

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049823 Ga0501044_0839351 Ga0501044_0839351_200_784 189
2 3300037466 Ga0395898_0052475 Ga0395898_0052475_3357_3962 196
3 3300045836 Ga0466958_0139282 Ga0466958_0139282_799_1482 208
4 3300035084 Ga0373928_0011787 Ga0373928_0011787_475_1134 214
5 3300035112 Ga0373932_0045081 Ga0373932_0045081_578_1237 214
6 3300031711 Ga0265314_10004332 Ga0265314_100043326 215
7 3300049573 Ga0501037_0141885 Ga0501037_0141885_93_755 215
8 3300037471 Ga0395905_0270857 Ga0395905_0270857_65_733 217
9 3300039062 Ga0400483_086740 Ga0400483_086740_819_1487 217
10 iso_pu_bacteria 2687453129 2687578923 217
11 3300009093 Ga0105240_10406924 Ga0105240_104069242 218
12 3300025909 Ga0207705_10663519 Ga0207705_106635191 218
13 3300045051 Ga0451576_0061084 Ga0451576_0061084_2761_3432 218
14 3300005614 Ga0068856_100114244 Ga0068856_1001142442 219
15 3300027614 Ga0209970_1001523 Ga0209970_10015234 219
16 3300031665 Ga0316575_10040897 Ga0316575_100408971 219
17 3300042876 Ga0451577_0022108 Ga0451577_0022108_842_1516 219
18 3300044712 Ga0453684_0037553 Ga0453684_0037553_772_1446 219
19 iso_pu_bacteria 2842775625 2842778346 219
20 3300005563 Ga0068855_100375847 Ga0068855_1003758472 220
21 3300013105 Ga0157369_10080864 Ga0157369_100808641 220
22 3300014325 Ga0163163_10161580 Ga0163163_101615802 220
23 3300025949 Ga0207667_10631830 Ga0207667_106318301 220
24 3300035724 Ga0373933_0033592 Ga0373933_0033592_2103_2780 220
25 3300005536 Ga0070697_100091819 Ga0070697_1000918193 221
26 3300037853 Ga0436364_0100419 Ga0436364_0100419_449_1129 221
27 3300041511 Ga0451855_1263978 Ga0451855_1263978_648_1328 221
28 3300042876 Ga0451577_0210177 Ga0451577_0210177_919_1599 221
29 3300044712 Ga0453684_0006001 Ga0453684_0006001_3903_4583 221
30 3300045051 Ga0451576_0937172 Ga0451576_0937172_127_807 221
31 3300031507 Ga0307509_10000031 Ga0307509_10000031125 222
32 3300046507 Ga0495606_0007380 Ga0495606_0007380_8831_9514 222
33 3300005549 Ga0070704_100134827 Ga0070704_1001348273 223
34 3300005937 Ga0081455_10352289 Ga0081455_103522892 223
35 3300006871 Ga0075434_100013968 Ga0075434_1000139688 223
36 3300032168 Ga0316593_10041126 Ga0316593_100411261 223
37 3300033541 Ga0316596_1006961 Ga0316596_10069613 223
38 3300050512 nmdc:mga0n895_43763_c1 nmdc:mga0n895_43763_c1_201_887 223
39 3300053087 Ga0500643_003303 Ga0500643_003303_7134_7820 223
40 3300053139 Ga0500568_0082713 Ga0500568_0082713_400_1086 223
41 iso_pu_bacteria 2738541271 2738688427 223
42 iso_pu_bacteria 2738543016 2739264159 223
43 iso_pu_bacteria 2919493220 2919493378 223
44 iso_pu_bacteria 2919543075 2919545222 223
45 iso_pu_bacteria 2923525760 2923528299 223
46 iso_pu_bacteria 651053060 651176634 223
47 3300005546 Ga0070696_100128005 Ga0070696_1001280052 224
48 3300013308 Ga0157375_10003091 Ga0157375_100030916 224
49 3300021388 Ga0213875_10001741 Ga0213875_1000174110 224
50 3300049579 Ga0501043_0539405 Ga0501043_0539405_96_785 224
51 iso_pu_bacteria 2823421272 2823424452 224
52 iso_pu_bacteria 2919501602 2919504180 224
53 iso_pu_bacteria 2926063275 2926065247 224
54 3300027360 Ga0209969_1001234 Ga0209969_10012342 225
55 3300027364 Ga0209967_1007112 Ga0209967_10071122 225
56 3300027395 Ga0209996_1003761 Ga0209996_10037613 225
57 3300027462 Ga0210000_1000244 Ga0210000_100024410 225
58 3300027543 Ga0209999_1003582 Ga0209999_10035823 225
59 3300039438 Ga0436360_0025535 Ga0436360_0025535_679_1371 225
60 3300039453 Ga0436362_0226104 Ga0436362_0226104_514_1206 225
61 3300045051 Ga0451576_0027283 Ga0451576_0027283_859_1560 225
62 3300048922 Ga0496119_0007774 Ga0496119_0007774_3253_3945 225
63 iso_pu_bacteria 3007315729 3007317880 225
64 3300006177 Ga0075362_10018710 Ga0075362_100187102 226
65 3300006178 Ga0075367_10080676 Ga0075367_100806762 226
66 3300007788 Ga0099795_10000011 Ga0099795_100000116 226
67 3300010159 Ga0099796_10000024 Ga0099796_1000002430 226
68 3300046517 Ga0495630_0210957 Ga0495630_0210957_673_1368 226
69 3300048925 Ga0496122_0012117 Ga0496122_0012117_4048_4737 226
70 3300049822 Ga0501035_0060123 Ga0501035_0060123_939_1634 226
71 3300049823 Ga0501044_0002192 Ga0501044_0002192_1580_2275 226
72 3300005367 Ga0070667_100122739 Ga0070667_1001227391 227
73 3300026088 Ga0207641_10716837 Ga0207641_107168372 227
74 3300045976 Ga0466967_0443130 Ga0466967_0443130_117_815 227
75 3300046492 Ga0495585_0005318 Ga0495585_0005318_6767_7465 227
76 3300046501 Ga0495607_0084134 Ga0495607_0084134_117_815 227
77 3300046515 Ga0495620_0001625 Ga0495620_0001625_2972_3670 227
78 3300046520 Ga0495637_0063942 Ga0495637_0063942_296_994 227
79 3300046665 Ga0495661_0000447 Ga0495661_0000447_4819_5517 227
80 3300046665 Ga0495661_0250584 Ga0495661_0250584_164_862 227
81 3300046694 Ga0495649_0003471 Ga0495649_0003471_2620_3318 227
82 3300047321 Ga0495676_0140206 Ga0495676_0140206_375_1073 227
83 3300047323 Ga0495683_0000033 Ga0495683_0000033_44695_45393 227
84 3300047469 Ga0495673_0002025 Ga0495673_0002025_221_919 227
85 3300047470 Ga0495681_0208777 Ga0495681_0208777_40_738 227
86 3300048927 Ga0496124_0000031 Ga0496124_0000031_79182_79880 227
87 3300050511 nmdc:mga08y16_118012_c1 nmdc:mga08y16_118012_c1_667_1377 227
88 3300053125 Ga0500618_003475 Ga0500618_003475_1984_2682 227
89 iso_pu_bacteria 640427133 640488586 227
90 3300031548 Ga0307408_100000027 Ga0307408_10000002790 228
91 3300039438 Ga0436360_1257086 Ga0436360_1257086_2636_3337 228
92 iso_pu_bacteria 2547132512 2548848196 228
93 iso_pu_bacteria 2600254954 2600442336 228
94 iso_pu_bacteria 2600255389 2602009699 228
95 3300005544 Ga0070686_100455645 Ga0070686_1004556452 229
96 3300013297 Ga0157378_10022215 Ga0157378_100222153 229
97 3300030500 Ga0268256_1000527 Ga0268256_10005271 229
98 3300042439 Ga0439464_0000554 Ga0439464_0000554_6850_7554 229
99 3300049823 Ga0501044_0375418 Ga0501044_0375418_83_787 229
100 3300044712 Ga0453684_0500906 Ga0453684_0500906_355_1062 230
101 3300038741 Ga0400488_10286 Ga0400488_10286_692_1402 231
102 3300059421 Ga0590071_028440 Ga0590071_028440_101_814 231
103 3300038741 Ga0400488_02159 Ga0400488_02159_1227_1940 232
104 3300039062 Ga0400483_154392 Ga0400483_154392_2005_2718 232
105 3300039093 Ga0400489_46548 Ga0400489_46548_1020_1733 232
106 3300039438 Ga0436360_0633837 Ga0436360_0633837_762_1475 232
107 3300037853 Ga0436364_1179264 Ga0436364_1179264_996_1712 233
108 3300042876 Ga0451577_0002516 Ga0451577_0002516_12304_13020 233
109 3300049581 Ga0501047_0104622 Ga0501047_0104622_21_740 233
110 3300005563 Ga0068855_100147539 Ga0068855_1001475392 234
111 3300025913 Ga0207695_10396747 Ga0207695_103967472 234
112 3300026078 Ga0207702_10373563 Ga0207702_103735632 234
113 3300036712 Ga0316584_0132201 Ga0316584_0132201_1023_1754 234
114 3300031649 Ga0307514_10001111 Ga0307514_1000111110 235
115 3300031727 Ga0316576_10026648 Ga0316576_100266482 235
116 3300035398 Ga0316574_0017353 Ga0316574_0017353_2127_2852 235
117 3300035398 Ga0316574_0031956 Ga0316574_0031956_263_988 235
118 iso_pu_bacteria 2690316117 2692320452 235
119 iso_pu_bacteria 2847417321 2847423899 235
120 iso_pu_bacteria 2896384573 2896386039 235
121 iso_pu_bacteria 2920760137 2920762413 235
122 iso_pu_bacteria 2920760137 2920766969 235
123 3300009177 Ga0105248_10016450 Ga0105248_100164503 236
124 3300014325 Ga0163163_10009958 Ga0163163_100099585 237
125 3300005336 Ga0070680_100008241 Ga0070680_1000082411 238
126 3300005456 Ga0070678_100192885 Ga0070678_1001928853 238
127 3300005563 Ga0068855_100083496 Ga0068855_1000834962 238
128 3300005614 Ga0068856_100121647 Ga0068856_1001216473 238
129 3300013104 Ga0157370_10000754 Ga0157370_1000075423 238
130 3300013308 Ga0157375_10372006 Ga0157375_103720062 238
131 3300025917 Ga0207660_10044209 Ga0207660_100442091 238
132 3300025949 Ga0207667_10033940 Ga0207667_100339402 238
133 3300026121 Ga0207683_10095170 Ga0207683_100951702 238
134 3300005548 Ga0070665_100137115 Ga0070665_1001371152 241
135 3300014968 Ga0157379_10119982 Ga0157379_101199822 241
136 3300044673 Ga0453683_0001073 Ga0453683_0001073_15892_16662 247
137 3300044712 Ga0453684_0103217 Ga0453684_0103217_1094_1864 247
138 3300045051 Ga0451576_0023546 Ga0451576_0023546_5142_5912 247
139 3300025298 Ga0209050_1002647 Ga0209050_10026477 252
140 3300046522 Ga0495643_0000329 Ga0495643_0000329_40626_41402 254
141 3300005327 Ga0070658_10003808 Ga0070658_100038085 255
142 3300010375 Ga0105239_10730289 Ga0105239_107302892 255

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00005

ABC_tran

ABC transporter

62

211

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
1f3o-assembly1.cif.gz_A-2 crystal structure of mj0796 atp-binding cassette 0.9502 26 246
5ws4-assembly1.cif.gz_B crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii 0.94 22 244
5xu1-assembly1.cif.gz_B structure of a non-canonical abc transporter from streptococcus pneumoniae r6 0.9382 23 242
3tuj-assembly1.cif.gz_C inward facing conformations of the metni methionine abc transporter: dm crystal form 0.9337 25 243
7w7a-assembly2.cif.gz_E heme exporter in complex with mn-containing protoporphyrin ix, mn-anomalous data 0.9285 25 237
ID Description Score Start End Superfamily
af_Q2G0D8_1_227_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9582 23 243 3.40.50.300
af_Q8T665_1_248_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.952 23 246 3.40.50.300
af_Q8T664_36_360_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9467 23 246 3.40.50.300
af_Q2G167_1_224_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9429 26 246 3.40.50.300
af_Q4DP20_46_317_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9384 23 252 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A7V9TM51-F1-model_v4 ABC transporter ATP-binding protein 0.9611 44 243 GO:0005524
GO:0005886
GO:0016887
GO:0022857
AF-A0A4P5VZ20-F1-model_v4 ABC transporter ATP-binding protein 0.9585 24 239 GO:0005524
GO:0005886
GO:0016887
GO:0022857
AF-A0A1Q7WYH7-F1-model_v4 ABC transporter domain-containing protein 0.9582 88 245 GO:0005524
GO:0005886
GO:0016887
GO:0022857
AF-A0A522W8K2-F1-model_v4 ABC transporter ATP-binding protein 0.9557 22 245 GO:0005524
GO:0016887
AF-A0A645BL08-F1-model_v4 Putative ABC transporter ATP-binding protein 0.9551 79 255 GO:0005524
GO:0016887

Feature Viewer

pLDDT pTM Quality
89.38 0.85 High
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Predicted Structure (AlphaFold2)

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