F177241

General Info

Members Datasets Scaffolds Average Seq Length
139 72 278 163

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0014607|Ga0451576_0014607_864_1442
Length 192
Sequence VHPVQNHGGLAAVFNSSVRRKENAMSFATCDLLDDNEAREGKDGLVIQVVAPMFKSYGAHPKFSGRIATLKVFEDNSLVREALASPGEGRVLVVDGGGSLRCALVGDQLGALGVRNGWAGIVVWGCIRDSLVINGQAIGVRALDTNPRKSIKKGAGDKDVAVTFGGVTFRPGEWLYADEDGVIVSSQALTAA

Samples

Sample ID Description Type Environment
1 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
2 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
3 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
4 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
5 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
6 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
7 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
8 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
9 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
10 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
11 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
12 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
13 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
14 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
15 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
16 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
17 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
18 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
19 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
20 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
21 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
22 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
23 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
24 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
25 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
26 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
27 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
28 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
29 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
30 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
31 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
32 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
33 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
34 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
35 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
36 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
37 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
38 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
39 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
40 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
41 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
42 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
43 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
44 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
45 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
46 3300042123 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0117W_E14_082716_2228 Metagenome Rhizosphere
47 3300042125 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_082716_2472 Metagenome Rhizosphere
48 3300042133 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB1023D_E14_070716_134 Metagenome Rhizosphere
49 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
50 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
51 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
52 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
53 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
54 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
55 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
56 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
57 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
58 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
59 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
60 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
61 3300049513 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D25_A_7_control Metagenome Rhizosphere
62 3300049522 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C24_B_7_control Metagenome Rhizosphere
63 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
64 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
65 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
66 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
67 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
68 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
69 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
70 2547132512 Azospira oryzae 6a3 Isolate Unclassified
71 2834641062 Cupriavidus gilardii JZ4 Isolate Unclassified
72 8003400568 Cupriavidus gilardii USM5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.84
Metatranscriptomes 0
Isolates 2.16

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 2.16
Rhizosphere 80.58
Stem 0
Stem Tuber 0
Unclassified 7.91

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451576_0014607 3300045051 Bacteria 8729
2 Ga0065704_10003412 3300005289 Bacteria 8337
3 Ga0070711_101072800 3300005439 Bacteria 693
4 Ga0070708_100039930 3300005445 Bacteria 4108
5 Ga0070707_100055974 3300005468 Unclassified 3781
6 Ga0070699_100267794 3300005518 Bacteria 1529
7 Ga0070664_101136539 3300005564 Bacteria 736
8 Ga0075431_100055208 3300006847 Bacteria 4097
9 Ga0075431_100072015 3300006847 Bacteria 3566
10 Ga0075429_100046253 3300006880 Bacteria 3787
11 Ga0105249_10626507 3300009553 Bacteria 1132
12 Ga0157377_11161225 3300014745 Bacteria 595
13 Ga0207702_11420437 3300026078 Bacteria 688
14 Ga0207648_10313404 3300026089 Bacteria 1409
15 Ga0265332_10000004 3300031238 Bacteria 426592
16 Ga0307408_100085912 3300031548 Bacteria 2364
17 Ga0307408_101033288 3300031548 Bacteria 759
18 Ga0307408_101037829 3300031548 Bacteria 757
19 Ga0307508_10164743 3300031616 Bacteria 1820
20 Ga0316575_10231279 3300031665 Bacteria 773
21 Ga0316579_10031252 3300031691 Bacteria 2437
22 Ga0316576_10259940 3300031727 Bacteria 1302
23 Ga0316578_10000691 3300031728 Bacteria 12139
24 Ga0307405_10075263 3300031731 Unclassified 2186
25 Ga0307405_10320862 3300031731 Bacteria 1183
26 Ga0307405_10547503 3300031731 Bacteria 936
27 Ga0316577_10026296 3300031733 Bacteria 3240
28 Ga0307413_10036351 3300031824 Unclassified 2834
29 Ga0307410_10001606 3300031852 Bacteria 10366
30 Ga0307410_10210744 3300031852 Bacteria 1489
31 Ga0307410_10351487 3300031852 Bacteria 1178
32 Ga0307410_10556825 3300031852 Bacteria 951
33 Ga0307410_10884405 3300031852 Bacteria 764
34 Ga0307406_10161017 3300031901 Bacteria 1613
35 Ga0307406_10220456 3300031901 Bacteria 1409
36 Ga0307406_10775643 3300031901 Bacteria 807
37 Ga0307407_10018119 3300031903 Bacteria 3553
38 Ga0307407_10062468 3300031903 Bacteria 2181
39 Ga0307407_10103883 3300031903 Bacteria 1769
40 Ga0307407_10445564 3300031903 Bacteria 939
41 Ga0307412_10167421 3300031911 Bacteria 1640
42 Ga0307409_100030540 3300031995 Bacteria 3873
43 Ga0307409_100033633 3300031995 Bacteria 3734
44 Ga0307409_100041433 3300031995 Bacteria 3439
45 Ga0307409_100217474 3300031995 Bacteria 1722
46 Ga0307409_100258650 3300031995 Bacteria 1596
47 Ga0307409_100490260 3300031995 Bacteria 1194
48 Ga0307409_100965280 3300031995 Unclassified 869
49 Ga0307409_101444741 3300031995 Bacteria 714
50 Ga0307409_102058159 3300031995 Bacteria 601
51 Ga0307416_100005942 3300032002 Bacteria 7584
52 Ga0307416_100063135 3300032002 Bacteria 3032
53 Ga0307416_100184422 3300032002 Bacteria 1960
54 Ga0307416_100256187 3300032002 Bacteria 1707
55 Ga0307416_100392498 3300032002 Bacteria 1422
56 Ga0307416_100465442 3300032002 Bacteria 1320
57 Ga0307416_101207916 3300032002 Bacteria 862
58 Ga0307416_101331588 3300032002 Bacteria 824
59 Ga0307416_101572627 3300032002 Bacteria 763
60 Ga0307416_101833280 3300032002 Bacteria 710
61 Ga0307416_102655144 3300032002 Unclassified 598
62 Ga0307414_10110097 3300032004 Bacteria 2094
63 Ga0307414_10261266 3300032004 Bacteria 1445
64 Ga0307414_10747705 3300032004 Bacteria 888
65 Ga0307415_100042221 3300032126 Bacteria 3034
66 Ga0307415_100226979 3300032126 Bacteria 1501
67 Ga0307415_100291294 3300032126 Bacteria 1348
68 Ga0307415_100866775 3300032126 Bacteria 830
69 Ga0307415_100943452 3300032126 Bacteria 798
70 Ga0307415_101243620 3300032126 Bacteria 703
71 Ga0316585_10016151 3300032137 Bacteria 2246
72 Ga0316580_10003473 3300032139 Bacteria 4480
73 Ga0316582_0072507 3300036647 Bacteria 2233
74 Ga0316584_0055567 3300036712 Bacteria 2964
75 Ga0400484_28123 3300038725 Bacteria 6717
76 Ga0400484_37413 3300038725 Bacteria 24266
77 Ga0400490_14923 3300038726 Bacteria 27610
78 Ga0400490_18121 3300038726 Bacteria 21063
79 Ga0400490_40156 3300038726 Bacteria 16122
80 Ga0400491_05343 3300038727 Bacteria 6061
81 Ga0400491_19957 3300038727 Bacteria 1207
82 Ga0400488_06720 3300038741 Bacteria 6094
83 Ga0400488_10820 3300038741 Bacteria 2551
84 Ga0400488_52331 3300038741 Unclassified 1489
85 Ga0400488_52817 3300038741 Bacteria 5385
86 Ga0400486_21069 3300038742 Bacteria 15366
87 Ga0400483_032254 3300039062 Bacteria 40609
88 Ga0400483_118642 3300039062 Bacteria 2936
89 Ga0400483_290729 3300039062 Bacteria 11832
90 Ga0400487_06983 3300039110 Bacteria 3011
91 Ga0400487_13453 3300039110 Unclassified 1885
92 Ga0400487_34179 3300039110 Bacteria 118235
93 Ga0400487_41074 3300039110 Bacteria 1146
94 Ga0400487_52735 3300039110 Bacteria 49053
95 Ga0400487_56692 3300039110 Bacteria 2860
96 Ga0439439_0058828 3300041406 Bacteria 1018
97 Ga0439465_0073270 3300041413 Bacteria 1151
98 Ga0439462_0044980 3300042015 Bacteria 1182
99 Ga0450921_008264 3300042123 Unclassified 842
100 Ga0450923_004455 3300042125 Bacteria 2201
101 Ga0450896_006130 3300042133 Bacteria 1646
102 Ga0439435_0202458 3300042436 Bacteria 655
103 Ga0451577_0128890 3300042876 Bacteria 2268
104 Ga0451577_0228969 3300042876 Bacteria 1680
105 Ga0451577_0351906 3300042876 Bacteria 1336
106 Ga0451577_0408488 3300042876 Bacteria 1232
107 Ga0451577_0659961 3300042876 Bacteria 948
108 Ga0451577_0679424 3300042876 Bacteria 933
109 Ga0451577_1293323 3300042876 Bacteria 649
110 Ga0453683_0110573 3300044673 Bacteria 1728
111 Ga0466966_0064265 3300044684 Bacteria 2311
112 Ga0466961_0029293 3300044693 Bacteria 3540
113 Ga0453684_0006991 3300044712 Bacteria 21112
114 Ga0453684_0062288 3300044712 Bacteria 4779
115 Ga0466971_0184474 3300044719 Bacteria 981
116 Ga0466960_0050162 3300044901 Bacteria 2012
117 Ga0466960_0795149 3300044901 Bacteria 572
118 Ga0451576_0016973 3300045051 Bacteria 8017
119 Ga0451576_0299630 3300045051 Bacteria 1681
120 Ga0451576_1592597 3300045051 Bacteria 677
121 Ga0451576_1651003 3300045051 Bacteria 664
122 Ga0466958_0518769 3300045836 Bacteria 773
123 Ga0496102_0033057 3300048905 Bacteria 4647
124 Ga0496106_0342340 3300048909 Bacteria 1201
125 Ga0496112_0351770 3300048915 Bacteria 1416
126 Ga0501290_009322 3300049513 Bacteria 1248
127 Ga0501299_090286 3300049522 Unclassified 695
128 Ga0501031_0338733 3300049568 Bacteria 974
129 Ga0501036_0176141 3300049572 Bacteria 1801
130 nmdc:mga09592_139910_c1 3300050508 Unclassified 2086
131 nmdc:mga09592_278424_c1 3300050508 Bacteria 1451
132 nmdc:mga0qj67_89656_c1 3300050509 Bacteria 2470
133 nmdc:mga06r32_67470_c1 3300050510 Bacteria 3454
134 nmdc:mga06r32_9203_c1 3300050510 Bacteria 8606
135 Ga0590077_044025 3300059426 Unclassified 996
136 Ga0466962_0021893 3300061719 Bacteria 3069
137 2548849273 2547132512 Bacteria 3416496
138 2834642776 2834641062 Bacteria 5559922
139 8003401554 8003400568 Bacteria 5535898
140 Ga0451576_0014607
141 Ga0065704_10003412
142 Ga0070711_101072800
143 Ga0070708_100039930
144 Ga0070707_100055974
145 Ga0070699_100267794
146 Ga0070664_101136539
147 Ga0075431_100055208
148 Ga0075431_100072015
149 Ga0075429_100046253
150 Ga0105249_10626507
151 Ga0157377_11161225
152 Ga0207702_11420437
153 Ga0207648_10313404
154 Ga0265332_10000004
155 Ga0307408_100085912
156 Ga0307408_101033288
157 Ga0307408_101037829
158 Ga0307508_10164743
159 Ga0316575_10231279
160 Ga0316579_10031252
161 Ga0316576_10259940
162 Ga0316578_10000691
163 Ga0307405_10075263
164 Ga0307405_10320862
165 Ga0307405_10547503
166 Ga0316577_10026296
167 Ga0307413_10036351
168 Ga0307410_10001606
169 Ga0307410_10210744
170 Ga0307410_10351487
171 Ga0307410_10556825
172 Ga0307410_10884405
173 Ga0307406_10161017
174 Ga0307406_10220456
175 Ga0307406_10775643
176 Ga0307407_10018119
177 Ga0307407_10062468
178 Ga0307407_10103883
179 Ga0307407_10445564
180 Ga0307412_10167421
181 Ga0307409_100030540
182 Ga0307409_100033633
183 Ga0307409_100041433
184 Ga0307409_100217474
185 Ga0307409_100258650
186 Ga0307409_100490260
187 Ga0307409_100965280
188 Ga0307409_101444741
189 Ga0307409_102058159
190 Ga0307416_100005942
191 Ga0307416_100063135
192 Ga0307416_100184422
193 Ga0307416_100256187
194 Ga0307416_100392498
195 Ga0307416_100465442
196 Ga0307416_101207916
197 Ga0307416_101331588
198 Ga0307416_101572627
199 Ga0307416_101833280
200 Ga0307416_102655144
201 Ga0307414_10110097
202 Ga0307414_10261266
203 Ga0307414_10747705
204 Ga0307415_100042221
205 Ga0307415_100226979
206 Ga0307415_100291294
207 Ga0307415_100866775
208 Ga0307415_100943452
209 Ga0307415_101243620
210 Ga0316585_10016151
211 Ga0316580_10003473
212 Ga0316582_0072507
213 Ga0316584_0055567
214 Ga0400484_28123
215 Ga0400484_37413
216 Ga0400490_14923
217 Ga0400490_18121
218 Ga0400490_40156
219 Ga0400491_05343
220 Ga0400491_19957
221 Ga0400488_06720
222 Ga0400488_10820
223 Ga0400488_52331
224 Ga0400488_52817
225 Ga0400486_21069
226 Ga0400483_032254
227 Ga0400483_118642
228 Ga0400483_290729
229 Ga0400487_06983
230 Ga0400487_13453
231 Ga0400487_34179
232 Ga0400487_41074
233 Ga0400487_52735
234 Ga0400487_56692
235 Ga0439439_0058828
236 Ga0439465_0073270
237 Ga0439462_0044980
238 Ga0450921_008264
239 Ga0450923_004455
240 Ga0450896_006130
241 Ga0439435_0202458
242 Ga0451577_0128890
243 Ga0451577_0228969
244 Ga0451577_0351906
245 Ga0451577_0408488
246 Ga0451577_0659961
247 Ga0451577_0679424
248 Ga0451577_1293323
249 Ga0453683_0110573
250 Ga0466966_0064265
251 Ga0466961_0029293
252 Ga0453684_0006991
253 Ga0453684_0062288
254 Ga0466971_0184474
255 Ga0466960_0050162
256 Ga0466960_0795149
257 Ga0451576_0016973
258 Ga0451576_0299630
259 Ga0451576_1592597
260 Ga0451576_1651003
261 Ga0466958_0518769
262 Ga0496102_0033057
263 Ga0496106_0342340
264 Ga0496112_0351770
265 Ga0501290_009322
266 Ga0501299_090286
267 Ga0501031_0338733
268 Ga0501036_0176141
269 nmdc:mga09592_139910_c1
270 nmdc:mga09592_278424_c1
271 nmdc:mga0qj67_89656_c1
272 nmdc:mga06r32_67470_c1
273 nmdc:mga06r32_9203_c1
274 Ga0590077_044025
275 Ga0466962_0021893
276 2548849273
277 2834642776
278 8003401554

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03737

RraA-like

Aldolase/RraA

29

184

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2yjv-assembly1.cif.gz_A crystal structure of e. coli regulator of ribonuclease activity a (rraa) bound to fragment of dead-box protein rhlb 0.9836 7 164
3c8o-assembly1.cif.gz_B the crystal structure of rraa from pao1 0.9816 6 164
2yjv-assembly1.cif.gz_A crystal structure of e. coli regulator of ribonuclease activity a (rraa) bound to fragment of dead-box protein rhlb 0.9774 7 164
1j3l-assembly1.cif.gz_A structure of the rna-processing inhibitor rraa from thermus thermophilis 0.9739 6 164
2pcn-assembly1.cif.gz_A crystal structure of s-adenosylmethionine: 2-dimethylmenaquinone methyltransferase (gk_1813) from geobacillus kaustophilus hta426 0.9701 8 163
ID Description Score Start End Superfamily
af_P0A8R0_1_161_3.50.30.40 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Ribonuclease E inhibitor RraA/RraA-like 0.9803 6 164 3.50.30.40
af_Q6Z6G8_4_168_3.50.30.40 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Ribonuclease E inhibitor RraA/RraA-like 0.9789 6 164 3.50.30.40
1j3lD00 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Ribonuclease E inhibitor RraA/RraA-like 0.9781 6 164 3.50.30.40
1nxjC00 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Ribonuclease E inhibitor RraA/RraA-like 0.9767 8 159 3.50.30.40
2pcnA00 Alpha Beta;3-Layer(bba) Sandwich;Glucose Oxidase; domain 1;Ribonuclease E inhibitor RraA/RraA-like 0.9701 8 163 3.50.30.40
ID Description Score Start End GO Terms
AF-A0A3D5FES9-F1-model_v4 4-hydroxy-4-methyl-2-oxoglutarate aldolase (HMG aldolase) (EC 4.1.1.112) (EC 4.1.3.17) (Oxaloacetate decarboxylase) 0.9968 6 164 GO:0008428
GO:0008948
GO:0046872
GO:0047443
GO:0051252
AF-A0A5C5TU48-F1-model_v4 4-hydroxy-4-methyl-2-oxoglutarate aldolase (HMG aldolase) (EC 4.1.1.112) (EC 4.1.3.17) (Oxaloacetate decarboxylase) 0.9967 8 164 GO:0008428
GO:0008948
GO:0046872
GO:0047443
GO:0051252
AF-A0A0Q9N5P1-F1-model_v4 4-hydroxy-4-methyl-2-oxoglutarate aldolase (HMG aldolase) (EC 4.1.1.112) (EC 4.1.3.17) (Oxaloacetate decarboxylase) 0.9962 28 158 GO:0008428
GO:0008948
GO:0046872
GO:0047443
GO:0051252
AF-A0A1Z8VHR3-F1-model_v4 4-hydroxy-4-methyl-2-oxoglutarate aldolase (HMG aldolase) (EC 4.1.1.112) (EC 4.1.3.17) (Oxaloacetate decarboxylase) 0.996 7 164 GO:0008428
GO:0008948
GO:0046872
GO:0047443
GO:0051252
AF-A0A5D3JAV9-F1-model_v4 4-hydroxy-4-methyl-2-oxoglutarate aldolase (HMG aldolase) (EC 4.1.1.112) (EC 4.1.3.17) (Oxaloacetate decarboxylase) 0.9957 42 164 GO:0008428
GO:0008948
GO:0046872
GO:0047443
GO:0051252

Map