F177212

General Info

Members Datasets Scaffolds Average Seq Length
139 90 138 366

Family's Representative Sequence

Representative Sequence 3300044712|Ga0453684_0000001|Ga0453684_0000001_2084324_2085556
Length 410
Sequence LLAGFHGSDAARTPGAGDAKGAMCSATGSLATPRLREPIAGDRVRATMGSVFGKLFTISTWGESHGGGVGVVIDGCPPRLPITAEEIQIELDRRRPGQSDIVTPRKEEDKVVILSGVFEGQTTGTPLAMLVGNTDQRPGAYDEMRDKFRPSHADFTYQTKYGVRDHRGGGRSSARETIGRVAAGAIARKLLARAAGVEIRAFVTRIHNIAAPENLPFPSLAEVEASPVRCPDAAVAAAMVERIKAVRAEGDSVGGVIECRIRNVPTGLGDPVFDRLEADLAKAMLSLPATKGFEIGSGFVGSWLKGSEHNDLFEQRAGRIRTATNRSGGVQGGISNGEEILFRVAFKPTATILQSQATVDREGQPTELMGRGRHDPCVVPRAVVIVEAMAALVLTDHWMRQHAQCSSFRF

Samples

Sample ID Description Type Environment
1 2840878972 Albibacillus kandeliae J95 Isolate Rhizosphere
2 3300000545 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled Metagenome Rhizosphere
3 3300002155 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7 Metagenome Rhizosphere
4 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
12 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
13 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
14 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
15 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
16 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
17 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
18 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
19 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
20 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
21 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
23 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
27 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
28 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
29 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
30 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
31 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
32 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
33 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
34 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
35 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
36 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
37 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
38 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
39 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
40 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
41 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
42 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
43 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
44 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
45 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
46 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
47 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
48 3300034818 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 Metagenome Rhizosphere
49 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
50 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
51 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
52 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
53 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
54 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
55 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
56 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
57 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
58 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
59 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
60 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
61 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
62 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
63 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
64 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
65 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
66 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
67 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
68 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
69 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
70 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
71 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
72 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
73 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
76 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
78 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
79 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
80 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
81 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
82 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
83 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
84 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
85 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
86 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
87 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
89 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
90 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.56
Metatranscriptomes 0.72
Isolates 0.72

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.44
Rhizosphere 75.54
Stem 0
Stem Tuber 0
Unclassified 23.02

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 CNXas_1000016 3300000545 Bacteria 35525
2 JGI24033J26618_1000096 3300002155 Bacteria 12503
3 rootH2_10000257 3300003320 Bacteria 32718
4 rootH2_10051818 3300003320 Bacteria 7685
5 Ga0070683_100044644 3300005329 Bacteria 4088
6 Ga0068869_100000001 3300005334 Bacteria 178472
7 Ga0070714_100180538 3300005435 Bacteria 1920
8 Ga0070681_10020944 3300005458 Bacteria 6551
9 Ga0068867_100001059 3300005459 Bacteria 18766
10 Ga0070679_100246587 3300005530 Bacteria 1743
11 Ga0070665_100218648 3300005548 Unclassified 1906
12 Ga0068857_100024326 3300005577 Bacteria 5331
13 Ga0097621_100008189 3300006237 Bacteria 7518
14 Ga0068871_100004777 3300006358 Bacteria 9470
15 Ga0075434_100260317 3300006871 Bacteria 1754
16 Ga0068865_100018398 3300006881 Bacteria 4507
17 Ga0105240_10000218 3300009093 Bacteria 115562
18 Ga0105247_10002108 3300009101 Bacteria 13751
19 Ga0157370_10194745 3300013104 Bacteria 1881
20 Ga0213876_10038418 3300021384 Unclassified 2526
21 Ga0207665_10209319 3300025939 Bacteria 1424
22 Ga0207689_10000048 3300025942 Bacteria 90313
23 Ga0207677_10259220 3300026023 Bacteria 1416
24 Ga0207702_10003295 3300026078 Bacteria 14884
25 Ga0268266_10171025 3300028379 Unclassified 1972
26 Ga0265337_1032731 3300028556 Bacteria 1537
27 Ga0265319_1000167 3300028563 Bacteria 50090
28 Ga0265318_10000016 3300028577 Bacteria 184782
29 Ga0265318_10002048 3300028577 Bacteria 11109
30 Ga0265323_10020817 3300028653 Bacteria 2520
31 Ga0307515_10139920 3300028794 Unclassified 2603
32 Ga0265338_10000319 3300028800 Bacteria 87159
33 Ga0265332_10032936 3300031238 Bacteria 2257
34 Ga0265332_10041719 3300031238 Bacteria 1985
35 Ga0265328_10063015 3300031239 Bacteria 1361
36 Ga0265320_10011197 3300031240 Bacteria 5289
37 Ga0265331_10006535 3300031250 Bacteria 6880
38 Ga0265331_10029040 3300031250 Bacteria 2762
39 Ga0265327_10000417 3300031251 Bacteria 77684
40 Ga0265327_10001067 3300031251 Bacteria 38215
41 Ga0265316_10000193 3300031344 Bacteria 70487
42 Ga0265316_10012041 3300031344 Bacteria 7776
43 Ga0265316_10045304 3300031344 Bacteria 3492
44 Ga0265316_10071702 3300031344 Bacteria 2670
45 Ga0265316_10128956 3300031344 Bacteria 1906
46 Ga0307513_10016253 3300031456 Bacteria 8984
47 Ga0307408_100000003 3300031548 Bacteria 618438
48 Ga0265313_10001978 3300031595 Bacteria 18506
49 Ga0307508_10000052 3300031616 Bacteria 129344
50 Ga0265314_10001010 3300031711 Bacteria 32917
51 Ga0265314_10003738 3300031711 Bacteria 14574
52 Ga0307410_10000009 3300031852 Bacteria 91471
53 Ga0307407_10112315 3300031903 Unclassified 1712
54 Ga0307407_10167596 3300031903 Bacteria 1443
55 Ga0307409_100000078 3300031995 Bacteria 34924
56 Ga0307416_100000070 3300032002 Bacteria 83644
57 Ga0316593_10027117 3300032168 Bacteria 1836
58 Ga0373950_0000076 3300034818 Bacteria 39463
59 Ga0373927_0017395 3300035695 Bacteria 4731
60 Ga0373927_0178458 3300035695 Bacteria 1393
61 Ga0373947_0041863 3300035725 Bacteria 2733
62 Ga0373937_0284027 3300036401 Bacteria 1563
63 Ga0316584_0259165 3300036712 Bacteria 1269
64 Ga0373925_0055432 3300037068 Bacteria 2967
65 Ga0395905_0000016 3300037471 Bacteria 382308
66 Ga0395901_0202189 3300038443 Bacteria 2082
67 Ga0436365_0499651 3300039437 Bacteria 4813
68 Ga0451577_0000023 3300042876 Bacteria 419051
69 Ga0451577_0001002 3300042876 Bacteria 41077
70 Ga0451577_0183718 3300042876 Bacteria 1885
71 Ga0451577_0236071 3300042876 Bacteria 1654
72 Ga0451577_0302870 3300042876 Bacteria 1448
73 Ga0453684_0000001 3300044712 Bacteria 2623166
74 Ga0453684_0011264 3300044712 Bacteria 15043
75 Ga0453684_0066425 3300044712 Bacteria 4593
76 Ga0466959_0068467 3300045049 Unclassified 2572
77 Ga0451576_0001831 3300045051 Bacteria 34517
78 Ga0451576_0099857 3300045051 Bacteria 3019
79 Ga0496111_0326757 3300048914 Bacteria 1136
80 Ga0496114_0019795 3300048917 Bacteria 5457
81 Ga0496116_0001812 3300048919 Bacteria 23151
82 Ga0496116_0003831 3300048919 Bacteria 14693
83 Ga0496116_0011528 3300048919 Bacteria 7305
84 Ga0496117_0000512 3300048920 Bacteria 64211
85 Ga0496118_0019246 3300048921 Bacteria 6112
86 Ga0496118_0025569 3300048921 Bacteria 5057
87 Ga0496119_0001558 3300048922 Bacteria 27314
88 Ga0496119_0025029 3300048922 Bacteria 4178
89 Ga0496119_0028685 3300048922 Bacteria 3792
90 Ga0496120_0000003 3300048923 Bacteria 538703
91 Ga0496120_0000144 3300048923 Bacteria 119285
92 Ga0496120_0005420 3300048923 Bacteria 10183
93 Ga0496120_0011090 3300048923 Bacteria 6220
94 Ga0496120_0045541 3300048923 Bacteria 2541
95 Ga0496122_0000006 3300048925 Bacteria 625811
96 Ga0496122_0000252 3300048925 Bacteria 120561
97 Ga0496122_0000657 3300048925 Bacteria 69747
98 Ga0496123_0002728 3300048926 Bacteria 21172
99 Ga0496123_0013507 3300048926 Bacteria 6846
100 Ga0496123_0024439 3300048926 Bacteria 4592
101 Ga0496125_0000133 3300048928 Bacteria 161487
102 Ga0496126_0000016 3300048929 Bacteria 625843
103 Ga0496126_0000404 3300048929 Bacteria 87755
104 Ga0496126_0000989 3300048929 Bacteria 48469
105 Ga0496126_0060899 3300048929 Bacteria 3392
106 Ga0501032_0000468 3300049569 Bacteria 32553
107 Ga0501034_0000226 3300049571 Bacteria 106404
108 Ga0501034_0000464 3300049571 Bacteria 67252
109 Ga0501038_0000332 3300049574 Bacteria 40833
110 Ga0501043_0000601 3300049579 Bacteria 31770
111 Ga0501043_0183815 3300049579 Bacteria 1628
112 Ga0501046_0000212 3300049580 Bacteria 60680
113 Ga0501046_0000454 3300049580 Bacteria 40999
114 Ga0501046_0024616 3300049580 Bacteria 4936
115 Ga0501047_0000011 3300049581 Bacteria 409778
116 Ga0501047_0152766 3300049581 Bacteria 2183
117 Ga0501048_0005437 3300049582 Bacteria 9685
118 Ga0501068_0000666 3300049584 Bacteria 17660
119 Ga0501070_0001998 3300049586 Bacteria 17935
120 Ga0501070_0072290 3300049586 Bacteria 2856
121 Ga0501072_0000009 3300049588 Bacteria 206584
122 Ga0501073_0017575 3300049589 Bacteria 5178
123 Ga0501074_0000900 3300049590 Bacteria 18993
124 Ga0501079_0000037 3300049741 Bacteria 56612
125 Ga0501080_0000660 3300049742 Bacteria 27368
126 Ga0501080_0247953 3300049742 Bacteria 1624
127 Ga0501083_0001538 3300049744 Bacteria 15778
128 Ga0501083_0006330 3300049744 Bacteria 8391
129 Ga0501083_0007417 3300049744 Bacteria 7779
130 Ga0501083_0052415 3300049744 Bacteria 2741
131 Ga0501083_0077038 3300049744 Bacteria 2213
132 Ga0501035_0009251 3300049822 Bacteria 9161
133 Ga0501035_0074286 3300049822 Bacteria 3008
134 Ga0501044_0000310 3300049823 Bacteria 61455
135 Ga0501044_0003278 3300049823 Bacteria 18223
136 Ga0501084_0000004 3300054114 Bacteria 267128
137 Ga0501084_0230946 3300054114 Bacteria 1562
138 Ga0501082_0000066 3300060353 Bacteria 75304

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048914 Ga0496111_0326757 Ga0496111_0326757_20_1018 330
2 3300048923 Ga0496120_0045541 Ga0496120_0045541_1447_2481 333
3 3300031344 Ga0265316_10012041 Ga0265316_100120416 335
4 3300048922 Ga0496119_0028685 Ga0496119_0028685_174_1217 336
5 3300021384 Ga0213876_10038418 Ga0213876_100384182 337
6 3300042876 Ga0451577_0236071 Ga0451577_0236071_19_1053 339
7 3300005548 Ga0070665_100218648 Ga0070665_1002186483 340
8 3300028379 Ga0268266_10171025 Ga0268266_101710252 340
9 3300036712 Ga0316584_0259165 Ga0316584_0259165_52_1074 340
10 3300049574 Ga0501038_0000332 Ga0501038_0000332_13612_14643 340
11 3300049586 Ga0501070_0072290 Ga0501070_0072290_527_1558 340
12 3300038443 Ga0395901_0202189 Ga0395901_0202189_808_1899 342
13 3300048925 Ga0496122_0000252 Ga0496122_0000252_60239_61330 350
14 3300048926 Ga0496123_0013507 Ga0496123_0013507_696_1787 350
15 3300048929 Ga0496126_0000404 Ga0496126_0000404_27543_28634 350
16 3300049742 Ga0501080_0247953 Ga0501080_0247953_217_1287 355
17 3300049744 Ga0501083_0052415 Ga0501083_0052415_155_1225 355
18 3300054114 Ga0501084_0230946 Ga0501084_0230946_132_1202 355
19 3300005435 Ga0070714_100180538 Ga0070714_1001805382 356
20 3300005530 Ga0070679_100246587 Ga0070679_1002465871 356
21 3300035695 Ga0373927_0017395 Ga0373927_0017395_1609_2685 356
22 3300035725 Ga0373947_0041863 Ga0373947_0041863_989_2065 356
23 3300037068 Ga0373925_0055432 Ga0373925_0055432_449_1525 356
24 iso_pu_bacteria 2840878972 2840881582 356
25 3300028800 Ga0265338_10000319 Ga0265338_1000031972 357
26 3300036401 Ga0373937_0284027 Ga0373937_0284027_437_1525 357
27 3300048919 Ga0496116_0001812 Ga0496116_0001812_2543_3646 357
28 3300048919 Ga0496116_0003831 Ga0496116_0003831_7498_8604 357
29 3300048919 Ga0496116_0011528 Ga0496116_0011528_6161_7270 357
30 3300048920 Ga0496117_0000512 Ga0496117_0000512_9365_10474 357
31 3300048921 Ga0496118_0019246 Ga0496118_0019246_677_1786 357
32 3300048921 Ga0496118_0025569 Ga0496118_0025569_1259_2368 357
33 3300048922 Ga0496119_0001558 Ga0496119_0001558_16512_17621 357
34 3300048922 Ga0496119_0025029 Ga0496119_0025029_957_2066 357
35 3300048923 Ga0496120_0000003 Ga0496120_0000003_448559_449668 357
36 3300048923 Ga0496120_0000144 Ga0496120_0000144_107055_108164 357
37 3300048923 Ga0496120_0005420 Ga0496120_0005420_5153_6286 357
38 3300048923 Ga0496120_0011090 Ga0496120_0011090_4730_5839 357
39 3300048925 Ga0496122_0000006 Ga0496122_0000006_55591_56703 357
40 3300048925 Ga0496122_0000657 Ga0496122_0000657_68592_69701 357
41 3300048926 Ga0496123_0002728 Ga0496123_0002728_11449_12558 357
42 3300048926 Ga0496123_0024439 Ga0496123_0024439_2845_3957 357
43 3300048928 Ga0496125_0000133 Ga0496125_0000133_11322_12431 357
44 3300048929 Ga0496126_0000016 Ga0496126_0000016_55592_56704 357
45 3300048929 Ga0496126_0000989 Ga0496126_0000989_17591_18700 357
46 3300048929 Ga0496126_0060899 Ga0496126_0060899_974_2083 357
47 3300005458 Ga0070681_10020944 Ga0070681_100209442 358
48 3300013104 Ga0157370_10194745 Ga0157370_101947452 358
49 3300025939 Ga0207665_10209319 Ga0207665_102093191 358
50 3300031344 Ga0265316_10000193 Ga0265316_100001939 358
51 3300035695 Ga0373927_0178458 Ga0373927_0178458_146_1228 358
52 3300031344 Ga0265316_10071702 Ga0265316_100717022 359
53 3300034818 Ga0373950_0000076 Ga0373950_0000076_24228_25343 359
54 3300048917 Ga0496114_0019795 Ga0496114_0019795_4022_5107 359
55 3300049571 Ga0501034_0000226 Ga0501034_0000226_49478_50584 359
56 3300049571 Ga0501034_0000464 Ga0501034_0000464_36970_38073 359
57 3300049579 Ga0501043_0000601 Ga0501043_0000601_22385_23491 359
58 3300049580 Ga0501046_0000454 Ga0501046_0000454_15683_16789 359
59 3300049581 Ga0501047_0000011 Ga0501047_0000011_64329_65435 359
60 3300049582 Ga0501048_0005437 Ga0501048_0005437_2345_3451 359
61 3300049584 Ga0501068_0000666 Ga0501068_0000666_6022_7128 359
62 3300049586 Ga0501070_0001998 Ga0501070_0001998_1863_2969 359
63 3300049588 Ga0501072_0000009 Ga0501072_0000009_136913_138019 359
64 3300049589 Ga0501073_0017575 Ga0501073_0017575_1863_2969 359
65 3300049590 Ga0501074_0000900 Ga0501074_0000900_11272_12378 359
66 3300049741 Ga0501079_0000037 Ga0501079_0000037_9508_10614 359
67 3300049742 Ga0501080_0000660 Ga0501080_0000660_12810_13916 359
68 3300049744 Ga0501083_0001538 Ga0501083_0001538_1863_2969 359
69 3300049823 Ga0501044_0003278 Ga0501044_0003278_11928_13016 359
70 3300054114 Ga0501084_0000004 Ga0501084_0000004_57430_58536 359
71 3300060353 Ga0501082_0000066 Ga0501082_0000066_25439_26545 359
72 3300005329 Ga0070683_100044644 Ga0070683_1000446442 360
73 3300005334 Ga0068869_100000001 Ga0068869_100000001148 360
74 3300005459 Ga0068867_100001059 Ga0068867_1000010597 360
75 3300006237 Ga0097621_100008189 Ga0097621_1000081892 360
76 3300006358 Ga0068871_100004777 Ga0068871_1000047771 360
77 3300006871 Ga0075434_100260317 Ga0075434_1002603171 360
78 3300006881 Ga0068865_100018398 Ga0068865_1000183983 360
79 3300009093 Ga0105240_10000218 Ga0105240_1000021821 360
80 3300009101 Ga0105247_10002108 Ga0105247_100021081 360
81 3300025942 Ga0207689_10000048 Ga0207689_1000004831 360
82 3300026023 Ga0207677_10259220 Ga0207677_102592201 360
83 3300028556 Ga0265337_1032731 Ga0265337_10327312 360
84 3300028563 Ga0265319_1000167 Ga0265319_100016720 360
85 3300028577 Ga0265318_10000016 Ga0265318_10000016143 360
86 3300028577 Ga0265318_10002048 Ga0265318_100020488 360
87 3300028653 Ga0265323_10020817 Ga0265323_100208172 360
88 3300028794 Ga0307515_10139920 Ga0307515_101399202 360
89 3300031238 Ga0265332_10032936 Ga0265332_100329362 360
90 3300031238 Ga0265332_10041719 Ga0265332_100417192 360
91 3300031239 Ga0265328_10063015 Ga0265328_100630151 360
92 3300031240 Ga0265320_10011197 Ga0265320_100111973 360
93 3300031250 Ga0265331_10006535 Ga0265331_100065352 360
94 3300031250 Ga0265331_10029040 Ga0265331_100290403 360
95 3300031251 Ga0265327_10000417 Ga0265327_1000041711 360
96 3300031251 Ga0265327_10001067 Ga0265327_1000106733 360
97 3300031344 Ga0265316_10045304 Ga0265316_100453042 360
98 3300031344 Ga0265316_10128956 Ga0265316_101289562 360
99 3300031548 Ga0307408_100000003 Ga0307408_100000003540 360
100 3300031595 Ga0265313_10001978 Ga0265313_1000197812 360
101 3300031616 Ga0307508_10000052 Ga0307508_1000005234 360
102 3300031711 Ga0265314_10001010 Ga0265314_100010103 360
103 3300031711 Ga0265314_10003738 Ga0265314_100037389 360
104 3300031852 Ga0307410_10000009 Ga0307410_1000000983 360
105 3300031903 Ga0307407_10112315 Ga0307407_101123151 360
106 3300031903 Ga0307407_10167596 Ga0307407_101675961 360
107 3300031995 Ga0307409_100000078 Ga0307409_10000007827 360
108 3300032002 Ga0307416_100000070 Ga0307416_10000007047 360
109 3300032168 Ga0316593_10027117 Ga0316593_100271173 360
110 3300037471 Ga0395905_0000016 Ga0395905_0000016_105325_106422 360
111 3300042876 Ga0451577_0000023 Ga0451577_0000023_73458_74579 360
112 3300042876 Ga0451577_0001002 Ga0451577_0001002_7211_8308 360
113 3300042876 Ga0451577_0183718 Ga0451577_0183718_521_1612 360
114 3300042876 Ga0451577_0302870 Ga0451577_0302870_321_1412 360
115 3300044712 Ga0453684_0000001 Ga0453684_0000001_2084324_2085556 360
116 3300044712 Ga0453684_0011264 Ga0453684_0011264_5334_6425 360
117 3300045051 Ga0451576_0099857 Ga0451576_0099857_703_1794 360
118 3300049569 Ga0501032_0000468 Ga0501032_0000468_18416_19507 360
119 3300049579 Ga0501043_0183815 Ga0501043_0183815_477_1568 360
120 3300049580 Ga0501046_0000212 Ga0501046_0000212_9088_10179 360
121 3300049580 Ga0501046_0024616 Ga0501046_0024616_184_1275 360
122 3300049581 Ga0501047_0152766 Ga0501047_0152766_79_1170 360
123 3300049744 Ga0501083_0077038 Ga0501083_0077038_692_1789 360
124 3300049822 Ga0501035_0009251 Ga0501035_0009251_935_2026 360
125 3300049823 Ga0501044_0000310 Ga0501044_0000310_18388_19479 360
126 3300002155 JGI24033J26618_1000096 JGI24033J26618_10000968 361
127 3300003320 rootH2_10000257 rootH2_1000025718 361
128 3300003320 rootH2_10051818 rootH2_100518183 361
129 3300005577 Ga0068857_100024326 Ga0068857_1000243262 361
130 3300026078 Ga0207702_10003295 Ga0207702_100032958 361
131 3300039437 Ga0436365_0499651 Ga0436365_0499651_3665_4768 361
132 3300044712 Ga0453684_0066425 Ga0453684_0066425_3124_4233 361
133 3300045049 Ga0466959_0068467 Ga0466959_0068467_559_1674 361
134 3300045051 Ga0451576_0001831 Ga0451576_0001831_17552_18676 361
135 3300049744 Ga0501083_0006330 Ga0501083_0006330_4905_6029 361
136 3300049744 Ga0501083_0007417 Ga0501083_0007417_5051_6169 361
137 3300049822 Ga0501035_0074286 Ga0501035_0074286_1637_2743 361
138 3300000545 CNXas_1000016 CNXas_10000169 362
139 3300031456 Ga0307513_10016253 Ga0307513_100162533 362

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01264

Chorismate_synt

Chorismate synthase

56

399

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
5z9a-assembly1.cif.gz_A crystal structure of chorismate synthase from pseudomonas aeruginosa 0.9613 2 358
5z9a-assembly1.cif.gz_B crystal structure of chorismate synthase from pseudomonas aeruginosa 0.9568 2 357
5z9a-assembly1.cif.gz_A crystal structure of chorismate synthase from pseudomonas aeruginosa 0.9462 2 358
5z9a-assembly1.cif.gz_B crystal structure of chorismate synthase from pseudomonas aeruginosa 0.9382 2 357
1sq1-assembly1.cif.gz_A error: ('connection aborted.', connectionreseterror(104, 'connection reset by peer')) 0.9294 4 360
ID Description Score Start End Superfamily
af_P12008_1_360_3.60.150.10 Alpha Beta;4-Layer Sandwich;Chorismate synthase, AroC fold;Chorismate synthase AroC 0.9736 2 361 3.60.150.10
af_A0A1D8PTK1_42_412_3.60.150.10 Alpha Beta;4-Layer Sandwich;Chorismate synthase, AroC fold;Chorismate synthase AroC 0.972 8 361 3.60.150.10
af_Q58575_11_372_3.60.150.10 Alpha Beta;4-Layer Sandwich;Chorismate synthase, AroC fold;Chorismate synthase AroC 0.9652 9 355 3.60.150.10
5z9aA00 Alpha Beta;4-Layer Sandwich;Chorismate synthase, AroC fold;Chorismate synthase AroC 0.9613 2 358 3.60.150.10
af_P28777_108_376_3.60.150.10 Alpha Beta;4-Layer Sandwich;Chorismate synthase, AroC fold;Chorismate synthase AroC 0.958 110 361 3.60.150.10
ID Description Score Start End GO Terms
AF-A0A350RH66-F1-model_v4 Chorismate synthase (EC 4.2.3.5) 0.9945 152 362 GO:0004107
GO:0005829
GO:0008652
GO:0009073
GO:0009423
GO:0010181
AF-A0A645HP75-F1-model_v4 chorismate synthase (EC 4.2.3.5) 0.9938 194 357 GO:0004107
GO:0005829
GO:0008652
GO:0009073
GO:0009423
GO:0010181
AF-A0A2V6WS67-F1-model_v4 Chorismate synthase (EC 4.2.3.5) 0.9914 169 360 GO:0004107
GO:0005829
GO:0008652
GO:0009073
GO:0009423
GO:0010181
AF-A0A2M6YUU7-F1-model_v4 Chorismate synthase (EC 4.2.3.5) 0.9904 196 357 GO:0004107
GO:0005829
GO:0008652
GO:0009073
GO:0009423
GO:0010181
AF-A0A7S3F598-F1-model_v4 chorismate synthase (EC 4.2.3.5) 0.9899 165 360 GO:0004107
GO:0005829
GO:0008652
GO:0009073
GO:0009423
GO:0010181

Feature Viewer

pLDDT pTM Quality
91.8 0.93 High
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Predicted Structure (AlphaFold2)

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