F173806

General Info

Members Datasets Scaffolds Average Seq Length
138 118 128 507

Family's Representative Sequence

Representative Sequence 3300037466|Ga0395898_0038198|Ga0395898_0038198_1187_2815
Length 542
Sequence MEAMTDKALRRIVIAGGGTAGWMAAAPLARMLRSGAGAPCEIVLVESPDIGTIGVGEATLPPIRAYNRSLGIDEADFVRRTQASFKLGIEFRDWGRLGHRFFHGFGDFGPPIDNRSSFMHWLRLARAGGMASYEDWSTAAVMARANRFTPPRGDVPSAANAYSYAYHFDAGLYAAYLREYAMRLGAQRIEGTIVDVRLRTTDGFIESLQLADGRLVDGDLFIDCSGFRGLLIEGALHAGYEDWGDLLPCDSALAVPSARAGALTPYTMSTARTAGWQWRIPLQHRTGNGHVYCSRFTSDDEAARTLLEGLDSPALGDPRLLRFTTGRRRKSWVGNCVALGLAAGFVEPLESTSLQLIMDGVGRLVENFPDRDFAPHLADEYNRRIALQYESIRDFIVMHYKLTARDDTAFWRHCAAMPIPDSLQHQIELFRSSGRVAIVDRDGFAEPSFISILFGLGVEPRSWDPFIDRIDEQALRTHYARLRAAIAGTVDGMPDHADYIARNARAEPPRMACTAPPQRMERLPTSARAPDEAGAGKGRIGR

Samples

Sample ID Description Type Environment
1 2738541337 Pelomonas sp. BT06 Isolate Unclassified
2 2848297114 Croceibacterium ferulae EGI 63111 Isolate Unclassified
3 2857553236 Duganella sp. R-74557 Isolate Unclassified
4 2928027323 Sphingomonas sp. 1185 Isolate Unclassified
5 2946787523 Sphingomonas faeni W4I17 Isolate Rhizosphere
6 2984555340 Sphingomonas sp. SORGH_AS789 Isolate Aerial Root
7 2984564862 Sphingomonas sp. SORGH_AS870 Isolate Aerial Root
8 2990265787 Sphingomonas sp. SORGH_AS802 Isolate Aerial Root
9 2993356040 Sphingomonas sp. SORGH_AS742 Isolate Aerial Root
10 2993693658 Sphingomonas sp. SORGH_AS438 Isolate Aerial Root
11 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
12 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
13 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
14 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
15 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
16 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
17 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
18 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
19 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
20 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
21 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
22 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
23 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
24 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
25 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
26 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
27 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
28 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
29 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
30 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
31 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
32 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
33 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
34 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
35 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
36 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
45 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
46 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
47 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
49 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
50 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
52 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
71 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
73 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
74 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
75 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
76 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
77 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
78 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
79 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
80 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
81 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
82 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
83 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
84 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
85 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
86 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
87 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
88 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
89 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
90 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
91 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
92 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
93 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
94 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
95 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
96 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
97 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
98 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
99 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
100 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
101 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
102 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
103 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
104 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
105 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
106 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
107 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
108 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
109 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
110 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
111 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
112 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
113 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
114 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
115 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
116 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
117 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
118 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.75
Metatranscriptomes 0
Isolates 7.25

Biome Distribution

Category Percentage (%)
Aerial Root 3.62
Bulb 0
Endosphere 7.97
Nodule 0
Rhizoplane 0
Rhizosphere 73.91
Stem 0
Stem Tuber 0
Unclassified 14.49

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25156J39149_1000026 3300002705 Bacteria 132099
2 JGI25154J39366_1000564 3300002738 Bacteria 18225
3 JGI25157J39369_1000008 3300002741 Bacteria 211083
4 rootH1_10125477 3300003316 Bacteria 2404
5 rootH2_10053078 3300003320 Bacteria 3167
6 rootL2_10021017 3300003322 Bacteria 2198
7 rootH1_10058610 3300003323 Bacteria 4724
8 rootH1_10080231 3300003323 Bacteria 9645
9 rootH1_10186707 3300003323 Bacteria 2601
10 Ga0055539_1000822 3300003752 Bacteria 7311
11 Ga0065165_1003699 3300005262 Bacteria 10373
12 Ga0070658_10101271 3300005327 Bacteria 2381
13 Ga0070683_100174933 3300005329 Bacteria 2038
14 Ga0068869_100028171 3300005334 Bacteria 3923
15 Ga0070660_100002345 3300005339 Bacteria 13011
16 Ga0070675_100045202 3300005354 Bacteria 3603
17 Ga0070713_100057598 3300005436 Bacteria 3237
18 Ga0070681_10057982 3300005458 Bacteria 3852
19 Ga0070686_100005026 3300005544 Bacteria 7303
20 Ga0070665_100001040 3300005548 Bacteria 34777
21 Ga0070665_100003776 3300005548 Bacteria 16030
22 Ga0068855_100003818 3300005563 Bacteria 18416
23 Ga0068855_100005234 3300005563 Bacteria 15824
24 Ga0068857_100007584 3300005577 Bacteria 9340
25 Ga0068854_100005825 3300005578 Bacteria 7805
26 Ga0068856_100005792 3300005614 Bacteria 12176
27 Ga0068861_100033123 3300005719 Bacteria 3810
28 Ga0081455_10000266 3300005937 Bacteria 68739
29 Ga0081539_10000066 3300005985 Bacteria 246391
30 Ga0097621_100016120 3300006237 Bacteria 5642
31 Ga0075370_10018955 3300006353 Bacteria 3738
32 Ga0105240_10011219 3300009093 Bacteria 12496
33 Ga0105240_10041981 3300009093 Bacteria 5832
34 Ga0105242_10069361 3300009176 Bacteria 2920
35 Ga0105237_10015913 3300009545 Bacteria 7821
36 Ga0105237_10099426 3300009545 Bacteria 2900
37 Ga0105238_10106164 3300009551 Bacteria 2790
38 Ga0105239_10016694 3300010375 Bacteria 8116
39 Ga0157369_10008856 3300013105 Bacteria 11525
40 Ga0157375_10103019 3300013308 Bacteria 2940
41 Ga0163161_10028859 3300017792 Bacteria 3942
42 Ga0213872_10000006 3300021361 Bacteria 249845
43 Ga0213872_10000657 3300021361 Bacteria 26183
44 Ga0209258_100474 3300025242 Bacteria 42679
45 Ga0209646_1000039 3300025246 Bacteria 349637
46 Ga0209026_1000006 3300025250 Bacteria 677225
47 Ga0209677_100067 3300025253 Bacteria 146379
48 Ga0209759_1000020 3300025256 Bacteria 344904
49 Ga0207643_10015071 3300025908 Bacteria 4203
50 Ga0207695_10035507 3300025913 Bacteria 5405
51 Ga0207695_10057987 3300025913 Bacteria 4021
52 Ga0207695_10099357 3300025913 Bacteria 2908
53 Ga0207671_10095114 3300025914 Bacteria 2249
54 Ga0207657_10005669 3300025919 Bacteria 13030
55 Ga0207694_10011588 3300025924 Bacteria 6653
56 Ga0207694_10080246 3300025924 Bacteria 2560
57 Ga0207650_10085004 3300025925 Bacteria 2406
58 Ga0207659_10062995 3300025926 Bacteria 2679
59 Ga0207670_10019339 3300025936 Bacteria 4159
60 Ga0207691_10068861 3300025940 Bacteria 3197
61 Ga0207689_10040716 3300025942 Bacteria 3845
62 Ga0207667_10003089 3300025949 Bacteria 20634
63 Ga0207667_10034397 3300025949 Bacteria 5441
64 Ga0207640_10009498 3300025981 Bacteria 5448
65 Ga0207639_10071558 3300026041 Bacteria 2713
66 Ga0207708_10039912 3300026075 Bacteria 3578
67 Ga0207702_10000111 3300026078 Bacteria 95170
68 Ga0207702_10016048 3300026078 Bacteria 6201
69 Ga0207648_10085573 3300026089 Bacteria 2750
70 Ga0207674_10023702 3300026116 Bacteria 6569
71 Ga0207675_100074842 3300026118 Bacteria 3169
72 Ga0209974_10011184 3300027876 Bacteria 3020
73 Ga0268266_10002052 3300028379 Bacteria 22335
74 Ga0268266_10006895 3300028379 Bacteria 10341
75 Ga0307515_10001513 3300028794 Bacteria 52028
76 Ga0316576_10031941 3300031727 Bacteria 3740
77 Ga0373961_0012446 3300035241 Bacteria 2131
78 Ga0395900_0022833 3300037418 Bacteria 6402
79 Ga0395898_0038198 3300037466 Bacteria 4760
80 Ga0395905_0046142 3300037471 Bacteria 4086
81 Ga0395905_0092396 3300037471 Bacteria 2837
82 Ga0395901_0006879 3300038443 Bacteria 11486
83 Ga0395901_0156689 3300038443 Bacteria 2392
84 Ga0436361_0215379 3300039447 Bacteria 26255
85 Ga0436361_0610133 3300039447 Bacteria 38416
86 Ga0466969_0003463 3300044656 Bacteria 8390
87 Ga0466972_0044875 3300044658 Bacteria 2143
88 Ga0466965_0048687 3300044683 Bacteria 2100
89 Ga0466966_0018301 3300044684 Bacteria 4621
90 Ga0466966_0019873 3300044684 Bacteria 4417
91 Ga0466961_0000743 3300044693 Bacteria 20411
92 Ga0466963_0022155 3300044694 Bacteria 4021
93 Ga0466971_0000660 3300044719 Bacteria 13721
94 Ga0466970_0034144 3300044765 Bacteria 2691
95 Ga0466957_0001229 3300044842 Bacteria 13379
96 Ga0466959_0000633 3300045049 Bacteria 20411
97 Ga0466959_0001926 3300045049 Bacteria 13058
98 Ga0466958_0015190 3300045836 Bacteria 4407
99 Ga0495617_002750 3300046452 Bacteria 6796
100 Ga0495627_000006 3300046453 Bacteria 581750
101 Ga0495638_0036924 3300046460 Bacteria 3109
102 Ga0495650_0000001 3300046471 Bacteria 1085492
103 Ga0495607_0000940 3300046501 Bacteria 27042
104 Ga0495606_0079784 3300046507 Bacteria 2038
105 Ga0495643_0046177 3300046522 Bacteria 2362
106 Ga0495648_0005470 3300046524 Bacteria 10544
107 Ga0495609_0000201 3300046538 Bacteria 59598
108 Ga0495622_0000012 3300046557 Bacteria 189011
109 Ga0495625_0001020 3300046660 Bacteria 36874
110 Ga0495661_0000117 3300046665 Bacteria 94565
111 Ga0495661_0000928 3300046665 Bacteria 26732
112 Ga0495669_0039377 3300046684 Bacteria 2093
113 Ga0495670_0067632 3300046691 Bacteria 1804
114 Ga0495671_0015838 3300046692 Bacteria 4035
115 Ga0495649_0046592 3300046694 Bacteria 2361
116 Ga0495673_0000037 3300047469 Bacteria 307717
117 Ga0496119_0000875 3300048922 Bacteria 39472
118 Ga0496120_0000173 3300048923 Bacteria 109909
119 Ga0496124_0003760 3300048927 Bacteria 18253
120 Ga0495678_000013 3300049459 Bacteria 316375
121 Ga0501033_0141451 3300049570 Bacteria 1739
122 nmdc:mga07m45_11476_c1 3300050496 Bacteria 4655
123 nmdc:mga07m45_46471_c1 3300050496 Bacteria 2439
124 Ga0500594_0000217 3300053118 Bacteria 14096
125 Ga0500618_000138 3300053125 Bacteria 61503
126 Ga0500588_0002542 3300053146 Bacteria 3732
127 Ga0500636_0045935 3300053177 Bacteria 2575
128 Ga0466962_0001658 3300061719 Bacteria 10441

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300003320 rootH2_10053078 rootH2_100530783 421
2 3300035241 Ga0373961_0012446 Ga0373961_0012446_763_2121 438
3 3300003316 rootH1_10125477 rootH1_101254772 459
4 3300009176 Ga0105242_10069361 Ga0105242_100693612 475
5 3300013308 Ga0157375_10103019 Ga0157375_101030192 475
6 3300005563 Ga0068855_100005234 Ga0068855_1000052343 482
7 3300037418 Ga0395900_0022833 Ga0395900_0022833_3213_4709 482
8 3300048922 Ga0496119_0000875 Ga0496119_0000875_19192_20646 482
9 3300048923 Ga0496120_0000173 Ga0496120_0000173_17254_18708 482
10 3300026041 Ga0207639_10071558 Ga0207639_100715583 486
11 iso_pu_bacteria 2848297114 2848300117 489
12 iso_pu_bacteria 2857553236 2857556470 490
13 3300025913 Ga0207695_10035507 Ga0207695_100355073 492
14 3300025949 Ga0207667_10003089 Ga0207667_100030898 492
15 3300009093 Ga0105240_10011219 Ga0105240_100112193 493
16 3300009545 Ga0105237_10015913 Ga0105237_100159132 493
17 3300046452 Ga0495617_002750 Ga0495617_002750_3891_5378 494
18 3300046507 Ga0495606_0079784 Ga0495606_0079784_104_1591 494
19 3300046524 Ga0495648_0005470 Ga0495648_0005470_6068_7555 494
20 3300046692 Ga0495671_0015838 Ga0495671_0015838_1974_3461 494
21 3300046694 Ga0495649_0046592 Ga0495649_0046592_487_1974 494
22 3300047469 Ga0495673_0000037 Ga0495673_0000037_141769_143256 494
23 3300049459 Ga0495678_000013 Ga0495678_000013_72014_73501 494
24 3300053118 Ga0500594_0000217 Ga0500594_0000217_8982_10469 494
25 3300005327 Ga0070658_10101271 Ga0070658_101012712 496
26 3300038443 Ga0395901_0156689 Ga0395901_0156689_107_1600 496
27 3300046684 Ga0495669_0039377 Ga0495669_0039377_10_1503 496
28 3300048927 Ga0496124_0003760 Ga0496124_0003760_1516_3009 497
29 iso_pu_bacteria 2738541337 2739054806 497
30 3300005436 Ga0070713_100057598 Ga0070713_1000575982 498
31 3300027876 Ga0209974_10011184 Ga0209974_100111842 498
32 3300046501 Ga0495607_0000940 Ga0495607_0000940_6259_7755 498
33 3300046665 Ga0495661_0000117 Ga0495661_0000117_35786_37282 498
34 3300046665 Ga0495661_0000928 Ga0495661_0000928_18962_20458 498
35 3300046453 Ga0495627_000006 Ga0495627_000006_329764_331269 499
36 3300046471 Ga0495650_0000001 Ga0495650_0000001_314296_315798 499
37 3300046522 Ga0495643_0046177 Ga0495643_0046177_277_1782 499
38 3300046538 Ga0495609_0000201 Ga0495609_0000201_13286_14791 499
39 3300005339 Ga0070660_100002345 Ga0070660_1000023458 500
40 3300025919 Ga0207657_10005669 Ga0207657_100056692 500
41 3300044658 Ga0466972_0044875 Ga0466972_0044875_426_1928 500
42 3300053125 Ga0500618_000138 Ga0500618_000138_11158_12666 500
43 3300005329 Ga0070683_100174933 Ga0070683_1001749332 501
44 3300005458 Ga0070681_10057982 Ga0070681_100579822 501
45 3300017792 Ga0163161_10028859 Ga0163161_100288593 501
46 3300021361 Ga0213872_10000657 Ga0213872_1000065711 501
47 3300025924 Ga0207694_10080246 Ga0207694_100802462 501
48 3300039447 Ga0436361_0215379 Ga0436361_0215379_9955_11463 501
49 3300021361 Ga0213872_10000006 Ga0213872_1000000699 502
50 3300028794 Ga0307515_10001513 Ga0307515_1000151318 502
51 3300039447 Ga0436361_0610133 Ga0436361_0610133_13418_14932 502
52 iso_pu_bacteria 2990265787 2990268745 502
53 iso_pu_bacteria 2993693658 2993694548 502
54 3300044683 Ga0466965_0048687 Ga0466965_0048687_145_1656 503
55 3300044684 Ga0466966_0019873 Ga0466966_0019873_2019_3530 503
56 3300044693 Ga0466961_0000743 Ga0466961_0000743_17928_19442 503
57 3300044694 Ga0466963_0022155 Ga0466963_0022155_2458_3972 503
58 3300044719 Ga0466971_0000660 Ga0466971_0000660_11762_13276 503
59 3300044765 Ga0466970_0034144 Ga0466970_0034144_1029_2540 503
60 3300044842 Ga0466957_0001229 Ga0466957_0001229_1754_3268 503
61 3300045049 Ga0466959_0000633 Ga0466959_0000633_970_2484 503
62 3300045049 Ga0466959_0001926 Ga0466959_0001926_8345_9856 503
63 3300045836 Ga0466958_0015190 Ga0466958_0015190_628_2142 503
64 3300046460 Ga0495638_0036924 Ga0495638_0036924_695_2212 503
65 3300046557 Ga0495622_0000012 Ga0495622_0000012_14206_15723 503
66 3300046660 Ga0495625_0001020 Ga0495625_0001020_30719_32230 503
67 3300046691 Ga0495670_0067632 Ga0495670_0067632_96_1607 503
68 3300061719 Ga0466962_0001658 Ga0466962_0001658_4650_6164 503
69 iso_pu_bacteria 2946787523 2946788127 503
70 3300003322 rootL2_10021017 rootL2_100210172 504
71 3300003323 rootH1_10080231 rootH1_100802313 504
72 3300003323 rootH1_10186707 rootH1_101867072 504
73 3300005548 Ga0070665_100003776 Ga0070665_1000037765 504
74 3300025914 Ga0207671_10095114 Ga0207671_100951141 504
75 3300028379 Ga0268266_10006895 Ga0268266_100068954 504
76 3300037471 Ga0395905_0046142 Ga0395905_0046142_1224_2741 504
77 3300009551 Ga0105238_10106164 Ga0105238_101061642 505
78 3300053146 Ga0500588_0002542 Ga0500588_0002542_2139_3656 505
79 3300005548 Ga0070665_100001040 Ga0070665_10000104015 506
80 3300025913 Ga0207695_10099357 Ga0207695_100993572 506
81 3300026078 Ga0207702_10016048 Ga0207702_100160485 506
82 3300028379 Ga0268266_10002052 Ga0268266_100020522 506
83 3300005262 Ga0065165_1003699 Ga0065165_10036991 507
84 3300005334 Ga0068869_100028171 Ga0068869_1000281714 507
85 3300005354 Ga0070675_100045202 Ga0070675_1000452024 507
86 3300025908 Ga0207643_10015071 Ga0207643_100150714 507
87 3300025925 Ga0207650_10085004 Ga0207650_100850042 507
88 3300025926 Ga0207659_10062995 Ga0207659_100629953 507
89 3300025936 Ga0207670_10019339 Ga0207670_100193393 507
90 3300025940 Ga0207691_10068861 Ga0207691_100688612 507
91 3300025942 Ga0207689_10040716 Ga0207689_100407164 507
92 3300026075 Ga0207708_10039912 Ga0207708_100399124 507
93 3300026089 Ga0207648_10085573 Ga0207648_100855733 507
94 3300026118 Ga0207675_100074842 Ga0207675_1000748422 507
95 3300005544 Ga0070686_100005026 Ga0070686_1000050266 508
96 3300006237 Ga0097621_100016120 Ga0097621_1000161205 508
97 3300044656 Ga0466969_0003463 Ga0466969_0003463_2923_4470 508
98 3300044684 Ga0466966_0018301 Ga0466966_0018301_2510_4057 508
99 3300005985 Ga0081539_10000066 Ga0081539_1000006637 509
100 3300049570 Ga0501033_0141451 Ga0501033_0141451_140_1681 509
101 iso_pu_bacteria 2928027323 2928028982 509
102 iso_pu_bacteria 2984555340 2984557786 509
103 iso_pu_bacteria 2984564862 2984567848 509
104 iso_pu_bacteria 2993356040 2993358899 509
105 3300005719 Ga0068861_100033123 Ga0068861_1000331233 510
106 3300031727 Ga0316576_10031941 Ga0316576_100319413 511
107 3300037471 Ga0395905_0092396 Ga0395905_0092396_955_2490 511
108 3300050496 nmdc:mga07m45_46471_c1 nmdc:mga07m45_46471_c1_240_1778 512
109 3300005563 Ga0068855_100003818 Ga0068855_10000381810 513
110 3300006353 Ga0075370_10018955 Ga0075370_100189552 513
111 3300009093 Ga0105240_10041981 Ga0105240_100419813 513
112 3300009545 Ga0105237_10099426 Ga0105237_100994262 513
113 3300010375 Ga0105239_10016694 Ga0105239_100166943 513
114 3300013105 Ga0157369_10008856 Ga0157369_100088564 513
115 3300050496 nmdc:mga07m45_11476_c1 nmdc:mga07m45_11476_c1_1894_3516 513
116 3300053177 Ga0500636_0045935 Ga0500636_0045935_650_2293 513
117 3300005937 Ga0081455_10000266 Ga0081455_1000026643 516
118 3300037466 Ga0395898_0038198 Ga0395898_0038198_1187_2815 516
119 3300038443 Ga0395901_0006879 Ga0395901_0006879_193_1821 516
120 3300002705 JGI25156J39149_1000026 JGI25156J39149_100002676 523
121 3300002738 JGI25154J39366_1000564 JGI25154J39366_10005644 523
122 3300002741 JGI25157J39369_1000008 JGI25157J39369_100000819 523
123 3300003323 rootH1_10058610 rootH1_100586102 523
124 3300003752 Ga0055539_1000822 Ga0055539_10008223 523
125 3300005577 Ga0068857_100007584 Ga0068857_1000075842 523
126 3300005578 Ga0068854_100005825 Ga0068854_1000058252 523
127 3300005614 Ga0068856_100005792 Ga0068856_1000057926 523
128 3300025242 Ga0209258_100474 Ga0209258_1004743 523
129 3300025246 Ga0209646_1000039 Ga0209646_1000039236 523
130 3300025250 Ga0209026_1000006 Ga0209026_1000006365 523
131 3300025253 Ga0209677_100067 Ga0209677_10006711 523
132 3300025256 Ga0209759_1000020 Ga0209759_100002020 523
133 3300025913 Ga0207695_10057987 Ga0207695_100579873 523
134 3300025924 Ga0207694_10011588 Ga0207694_100115883 523
135 3300025949 Ga0207667_10034397 Ga0207667_100343973 523
136 3300025981 Ga0207640_10009498 Ga0207640_100094984 523
137 3300026078 Ga0207702_10000111 Ga0207702_1000011161 523
138 3300026116 Ga0207674_10023702 Ga0207674_100237024 523

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04820

Trp_halogenase

Tryptophan halogenase

11

472

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
6y1w-assembly1.cif.gz_B xcc4156, a flavin-dependent halogenase from xanthomonas campestris 0.9732 15 517
6y1w-assembly1.cif.gz_B xcc4156, a flavin-dependent halogenase from xanthomonas campestris 0.9693 15 517
6frl-assembly1.cif.gz_A brvh, a flavin-dependent halogenase from brevundimonas sp. bal3 0.9677 13 509
6frl-assembly1.cif.gz_B brvh, a flavin-dependent halogenase from brevundimonas sp. bal3 0.9674 13 509
6frl-assembly1.cif.gz_A brvh, a flavin-dependent halogenase from brevundimonas sp. bal3 0.9639 13 509
ID Description Score Start End Superfamily
6frlA00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9677 13 509 3.50.50.60
6frlA00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9639 13 509 3.50.50.60
2jkcA00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9242 13 509 3.50.50.60
2wetA00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9232 16 508 3.50.50.60
2wetA00 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9142 16 508 3.50.50.60
ID Description Score Start End GO Terms
AF-T0XUP4-F1-model_v4 Tryptophan halogenase 0.9891 216 514 GO:0004497
AF-A0A845HHE7-F1-model_v4 Tryptophan halogenase 0.9883 12 511 GO:0000166
GO:0004497
AF-B9THG3-F1-model_v4 Tryptophan halogenase 0.9882 44 472 GO:0004497
AF-A0A7X3K6X5-F1-model_v4 FAD-dependent oxidoreductase 0.9866 14 514 GO:0000166
GO:0004497
AF-A0A519HAK9-F1-model_v4 Tryptophan halogenase 0.9862 260 509 GO:0004497

Feature Viewer

pLDDT pTM Quality
91.41 0.9 High
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Predicted Structure (AlphaFold2)

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