F168484

General Info

Members Datasets Scaffolds Average Seq Length
137 107 136 214

Family's Representative Sequence

Representative Sequence 3300003322|rootL2_10053452|rootL2_100534522
Length 251
Sequence VTGMLSQRFRHIAIEGPIGVGKSSLARRLAEHLGARLFLERPQDNPYLERFYRAGTDDLQANPYALPTQLFFLFQRLEQMRELAQPGMFDESLESAPRQAQAVATPQGGESTLGQAGDALVSDFLFAKDALFARLTLADEDHLLYMQIYRRYAPQVPQPDLVIWLRAEVPTLLQRIARRGLPMESGIAQDYLAKLSAGYVRLFSELPGLPVLAIDTDNFNPIDNDAHFEALIDRLGQFRGPRERWGPAALV

Samples

Sample ID Description Type Environment
1 2643221603 Noviherbaspirillum sp. Root189 Isolate Unclassified
2 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
11 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
12 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
13 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
18 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
19 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
20 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
23 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
24 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
25 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
26 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
27 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
28 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
29 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
30 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
33 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
34 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
35 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
36 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
37 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
38 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
39 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300027512 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
46 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
47 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
48 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
49 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
50 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
51 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
52 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
53 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
54 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
55 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
56 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
57 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
58 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
59 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
60 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
61 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
62 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
63 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
64 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
65 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
66 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
67 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
68 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
69 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
70 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
71 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
72 3300042129 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_070516_95 Metagenome Rhizosphere
73 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
74 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
75 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
76 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
77 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
78 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
79 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
80 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
81 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
82 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
83 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
84 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
85 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
86 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
87 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
88 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
90 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
91 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
92 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
93 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
94 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
95 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
96 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
97 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
98 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
99 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
100 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
101 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
102 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
103 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
104 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
105 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
106 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
107 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.27
Metatranscriptomes 0
Isolates 0.73

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.22
Nodule 0
Rhizoplane 2.92
Rhizosphere 78.1
Stem 0
Stem Tuber 0
Unclassified 8.76

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10097771 3300003316 Bacteria 1045
2 rootL2_10053452 3300003322 Bacteria 1686
3 Ga0070658_10291365 3300005327 Bacteria 1391
4 Ga0070690_100111925 3300005330 Bacteria 1823
5 Ga0070682_100557574 3300005337 Bacteria 898
6 Ga0070660_100003258 3300005339 Bacteria 11135
7 Ga0070660_100068517 3300005339 Bacteria 2766
8 Ga0070691_10218993 3300005341 Bacteria 1008
9 Ga0070659_100513995 3300005366 Bacteria 1022
10 Ga0070705_100106663 3300005440 Bacteria 1781
11 Ga0070708_100543862 3300005445 Unclassified 1096
12 Ga0070681_10152172 3300005458 Bacteria 2240
13 Ga0070706_100139303 3300005467 Bacteria 2264
14 Ga0070707_100062354 3300005468 Bacteria 3577
15 Ga0070698_100293832 3300005471 Bacteria 1556
16 Ga0070679_100860563 3300005530 Bacteria 850
17 Ga0070696_100080593 3300005546 Bacteria 2305
18 Ga0070693_100010926 3300005547 Bacteria 4561
19 Ga0070704_100100844 3300005549 Bacteria 2175
20 Ga0070704_100104752 3300005549 Bacteria 2140
21 Ga0068858_100003862 3300005842 Bacteria 14813
22 Ga0068860_100151149 3300005843 Bacteria 2236
23 Ga0075365_10017157 3300006038 Bacteria 4422
24 Ga0075365_10060514 3300006038 Bacteria 2527
25 Ga0075369_10008821 3300006186 Bacteria 3895
26 Ga0075366_10100907 3300006195 Bacteria 1732
27 Ga0075428_100002149 3300006844 Bacteria 21295
28 Ga0075434_100073112 3300006871 Bacteria 3421
29 Ga0075436_100000090 3300006914 Bacteria 52278
30 Ga0075436_100058317 3300006914 Bacteria 2666
31 Ga0075435_100036719 3300007076 Bacteria 3896
32 Ga0099794_10011928 3300007265 Bacteria 3735
33 Ga0099795_10036618 3300007788 Bacteria 1723
34 Ga0105245_10449253 3300009098 Bacteria 1297
35 Ga0157372_10503084 3300013307 Bacteria 1413
36 Ga0157372_10598135 3300013307 Bacteria 1286
37 Ga0157377_10099426 3300014745 Bacteria 1731
38 Ga0157379_10147185 3300014968 Bacteria 2124
39 Ga0163161_10054248 3300017792 Bacteria 2909
40 Ga0213872_10000063 3300021361 Bacteria 97755
41 Ga0213872_10018878 3300021361 Bacteria 3178
42 Ga0213876_10014324 3300021384 Bacteria 4203
43 Ga0209026_1008313 3300025250 Bacteria 2182
44 Ga0207684_10012905 3300025910 Bacteria 7236
45 Ga0207693_10410305 3300025915 Unclassified 1059
46 Ga0207700_10000158 3300025928 Bacteria 40609
47 Ga0207690_10268417 3300025932 Bacteria 1325
48 Ga0207690_10377004 3300025932 Bacteria 1127
49 Ga0207665_10004282 3300025939 Bacteria 9485
50 Ga0207665_10146712 3300025939 Bacteria 1686
51 Ga0209179_1001864 3300027512 Bacteria 2712
52 Ga0307511_10000061 3300030521 Bacteria 92175
53 Ga0265328_10000005 3300031239 Bacteria 230229
54 Ga0265328_10005725 3300031239 Bacteria 5309
55 Ga0265320_10144681 3300031240 Bacteria 1075
56 Ga0265339_10074336 3300031249 Bacteria 1806
57 Ga0265331_10003341 3300031250 Bacteria 10410
58 Ga0265331_10186659 3300031250 Bacteria 936
59 Ga0265327_10000136 3300031251 Bacteria 160868
60 Ga0265327_10000216 3300031251 Bacteria 117692
61 Ga0265327_10011992 3300031251 Bacteria 5899
62 Ga0265327_10047083 3300031251 Bacteria 2278
63 Ga0265327_10061697 3300031251 Bacteria 1911
64 Ga0307509_10186197 3300031507 Bacteria 1934
65 Ga0316575_10001070 3300031665 Bacteria 8527
66 Ga0316578_10096371 3300031728 Bacteria 1771
67 Ga0307516_10000386 3300031730 Bacteria 57562
68 Ga0307412_10169585 3300031911 Unclassified 1631
69 Ga0307409_100033726 3300031995 Bacteria 3729
70 Ga0316585_10025867 3300032137 Bacteria 1822
71 Ga0307507_10087709 3300033179 Bacteria 2689
72 Ga0373949_0024051 3300035090 Bacteria 1414
73 Ga0373961_0011897 3300035241 Bacteria 2168
74 Ga0373961_0103003 3300035241 Bacteria 926
75 Ga0373937_0304509 3300036401 Bacteria 1507
76 Ga0316582_0093538 3300036647 Bacteria 1982
77 Ga0395899_0146155 3300037312 Bacteria 1679
78 Ga0395900_0012404 3300037418 Bacteria 8716
79 Ga0395900_0159549 3300037418 Bacteria 2301
80 Ga0395900_0254148 3300037418 Bacteria 1757
81 Ga0395900_0277650 3300037418 Bacteria 1668
82 Ga0395898_0036893 3300037466 Bacteria 4851
83 Ga0395901_0006191 3300038443 Bacteria 12125
84 Ga0395901_0023953 3300038443 Bacteria 6262
85 Ga0395901_0076362 3300038443 Bacteria 3495
86 Ga0400490_38197 3300038726 Bacteria 1681
87 Ga0436365_0649500 3300039437 Bacteria 4126
88 Ga0436361_0009661 3300039447 Bacteria 1111
89 Ga0436361_0811061 3300039447 Bacteria 135576
90 Ga0436361_0959236 3300039447 Bacteria 581
91 Ga0451802_0303482 3300041460 Bacteria 2495
92 Ga0451807_2146036 3300041486 Bacteria 1019
93 Ga0450891_014910 3300042129 Bacteria 735
94 Ga0439460_0074105 3300042461 Bacteria 1059
95 Ga0450901_013393 3300042533 Bacteria 859
96 Ga0451577_0003296 3300042876 Bacteria 18156
97 Ga0451577_0050312 3300042876 Bacteria 3720
98 Ga0451577_0153215 3300042876 Bacteria 2074
99 Ga0451577_0791298 3300042876 Unclassified 857
100 Ga0466965_0113123 3300044683 Bacteria 1396
101 Ga0453684_0475849 3300044712 Bacteria 1386
102 Ga0466970_0038985 3300044765 Bacteria 2521
103 Ga0466957_0079429 3300044842 Bacteria 2041
104 Ga0451576_0002358 3300045051 Bacteria 28480
105 Ga0451576_0074373 3300045051 Bacteria 3536
106 Ga0451576_0121004 3300045051 Bacteria 2725
107 Ga0466967_0599755 3300045976 Bacteria 1087
108 Ga0495653_0473489 3300046463 Bacteria 784
109 Ga0495580_0140176 3300046472 Bacteria 1676
110 Ga0495588_0161341 3300046674 Unclassified 1186
111 Ga0496114_0028366 3300048917 Bacteria 4593
112 Ga0496115_0249735 3300048918 Bacteria 1461
113 Ga0496125_0000897 3300048928 Bacteria 47149
114 Ga0501038_0707985 3300049574 Bacteria 754
115 Ga0501069_0010105 3300049585 Bacteria 4992
116 Ga0501070_0106226 3300049586 Bacteria 2320
117 Ga0501070_0122783 3300049586 Bacteria 2146
118 Ga0501238_007255 3300049671 Bacteria 1438
119 Ga0501080_0042583 3300049742 Bacteria 4228
120 Ga0501080_0068695 3300049742 Bacteria 3296
121 Ga0501044_0104471 3300049823 Bacteria 2847
122 nmdc:mga0yw44_33131_c1 3300050492 Bacteria 3016
123 nmdc:mga07m45_129429_c1 3300050496 Bacteria 1460
124 nmdc:mga0n895_66728_c1 3300050512 Bacteria 3562
125 nmdc:mga0rr50_8865_c1 3300050513 Bacteria 6282
126 nmdc:mga08x19_281_c1 3300050514 Bacteria 38370
127 nmdc:mga08x19_8794_c1 3300050514 Bacteria 6025
128 Ga0500646_0000511 3300053090 Bacteria 11404
129 Ga0500583_0034210 3300053092 Bacteria 2257
130 Ga0500655_000812 3300053133 Bacteria 6128
131 Ga0500561_0053008 3300053137 Bacteria 1113
132 Ga0500604_0000223 3300053151 Bacteria 16356
133 Ga0500622_0000002 3300053156 Bacteria 646442
134 Ga0500624_011483 3300053157 Bacteria 1294
135 Ga0500627_0175488 3300053158 Bacteria 965
136 Ga0590071_003084 3300059421 Bacteria 4131

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300039447 Ga0436361_0009661 Ga0436361_0009661_20_562 180
2 3300039447 Ga0436361_0959236 Ga0436361_0959236_20_562 180
3 3300006195 Ga0075366_10100907 Ga0075366_101009072 187
4 3300049574 Ga0501038_0707985 Ga0501038_0707985_11_577 188
5 3300006914 Ga0075436_100058317 Ga0075436_1000583173 190
6 3300045051 Ga0451576_0074373 Ga0451576_0074373_1052_1684 190
7 3300050514 nmdc:mga08x19_8794_c1 nmdc:mga08x19_8794_c1_4142_4774 190
8 3300005546 Ga0070696_100080593 Ga0070696_1000805933 192
9 3300037312 Ga0395899_0146155 Ga0395899_0146155_43_672 200
10 3300037418 Ga0395900_0012404 Ga0395900_0012404_5141_5770 200
11 3300038443 Ga0395901_0076362 Ga0395901_0076362_1752_2381 200
12 3300005530 Ga0070679_100860563 Ga0070679_1008605631 202
13 3300042876 Ga0451577_0050312 Ga0451577_0050312_2143_2754 203
14 3300045051 Ga0451576_0002358 Ga0451576_0002358_18054_18665 203
15 3300059421 Ga0590071_003084 Ga0590071_003084_2181_2876 204
16 3300005458 Ga0070681_10152172 Ga0070681_101521722 205
17 3300042461 Ga0439460_0074105 Ga0439460_0074105_281_898 205
18 3300005327 Ga0070658_10291365 Ga0070658_102913653 206
19 3300005366 Ga0070659_100513995 Ga0070659_1005139952 206
20 3300021384 Ga0213876_10014324 Ga0213876_100143245 206
21 3300025932 Ga0207690_10377004 Ga0207690_103770042 206
22 3300039437 Ga0436365_0649500 Ga0436365_0649500_3355_3981 206
23 3300031249 Ga0265339_10074336 Ga0265339_100743362 207
24 3300005330 Ga0070690_100111925 Ga0070690_1001119252 208
25 3300005341 Ga0070691_10218993 Ga0070691_102189931 208
26 3300005843 Ga0068860_100151149 Ga0068860_1001511493 208
27 3300006844 Ga0075428_100002149 Ga0075428_10000214911 208
28 3300006914 Ga0075436_100000090 Ga0075436_10000009028 208
29 3300014745 Ga0157377_10099426 Ga0157377_100994264 208
30 3300035090 Ga0373949_0024051 Ga0373949_0024051_750_1382 208
31 3300050514 nmdc:mga08x19_281_c1 nmdc:mga08x19_281_c1_12513_13145 208
32 iso_pu_bacteria 2643221603 2644029249 208
33 3300005337 Ga0070682_100557574 Ga0070682_1005575742 209
34 3300005547 Ga0070693_100010926 Ga0070693_1000109266 209
35 3300007076 Ga0075435_100036719 Ga0075435_1000367196 209
36 3300009098 Ga0105245_10449253 Ga0105245_104492533 209
37 3300031250 Ga0265331_10186659 Ga0265331_101866591 209
38 3300046463 Ga0495653_0473489 Ga0495653_0473489_16_660 209
39 3300050513 nmdc:mga0rr50_8865_c1 nmdc:mga0rr50_8865_c1_2470_3105 209
40 3300041486 Ga0451807_2146036 Ga0451807_2146036_150_788 210
41 3300005339 Ga0070660_100003258 Ga0070660_1000032584 211
42 3300005339 Ga0070660_100068517 Ga0070660_1000685173 211
43 3300005440 Ga0070705_100106663 Ga0070705_1001066632 211
44 3300005467 Ga0070706_100139303 Ga0070706_1001393033 211
45 3300005468 Ga0070707_100062354 Ga0070707_1000623543 211
46 3300005549 Ga0070704_100100844 Ga0070704_1001008442 211
47 3300005549 Ga0070704_100104752 Ga0070704_1001047522 211
48 3300005842 Ga0068858_100003862 Ga0068858_1000038627 211
49 3300006038 Ga0075365_10017157 Ga0075365_100171576 211
50 3300006038 Ga0075365_10060514 Ga0075365_100605144 211
51 3300006186 Ga0075369_10008821 Ga0075369_100088216 211
52 3300006871 Ga0075434_100073112 Ga0075434_1000731122 211
53 3300007265 Ga0099794_10011928 Ga0099794_100119283 211
54 3300007788 Ga0099795_10036618 Ga0099795_100366182 211
55 3300014968 Ga0157379_10147185 Ga0157379_101471853 211
56 3300017792 Ga0163161_10054248 Ga0163161_100542484 211
57 3300021361 Ga0213872_10000063 Ga0213872_1000006343 211
58 3300021361 Ga0213872_10018878 Ga0213872_100188784 211
59 3300025250 Ga0209026_1008313 Ga0209026_10083132 211
60 3300025910 Ga0207684_10012905 Ga0207684_100129052 211
61 3300025932 Ga0207690_10268417 Ga0207690_102684172 211
62 3300025939 Ga0207665_10004282 Ga0207665_100042827 211
63 3300025939 Ga0207665_10146712 Ga0207665_101467122 211
64 3300027512 Ga0209179_1001864 Ga0209179_10018642 211
65 3300030521 Ga0307511_10000061 Ga0307511_1000006147 211
66 3300031251 Ga0265327_10047083 Ga0265327_100470832 211
67 3300031251 Ga0265327_10061697 Ga0265327_100616972 211
68 3300033179 Ga0307507_10087709 Ga0307507_100877093 211
69 3300037418 Ga0395900_0159549 Ga0395900_0159549_1639_2280 211
70 3300037418 Ga0395900_0254148 Ga0395900_0254148_1007_1648 211
71 3300037418 Ga0395900_0277650 Ga0395900_0277650_503_1144 211
72 3300037466 Ga0395898_0036893 Ga0395898_0036893_1713_2354 211
73 3300038443 Ga0395901_0006191 Ga0395901_0006191_6061_6702 211
74 3300038443 Ga0395901_0023953 Ga0395901_0023953_4326_4967 211
75 3300039447 Ga0436361_0811061 Ga0436361_0811061_113386_114027 211
76 3300042533 Ga0450901_013393 Ga0450901_013393_34_675 211
77 3300042876 Ga0451577_0003296 Ga0451577_0003296_5534_6175 211
78 3300042876 Ga0451577_0153215 Ga0451577_0153215_684_1334 211
79 3300042876 Ga0451577_0791298 Ga0451577_0791298_118_780 211
80 3300044683 Ga0466965_0113123 Ga0466965_0113123_489_1130 211
81 3300044712 Ga0453684_0475849 Ga0453684_0475849_266_916 211
82 3300044765 Ga0466970_0038985 Ga0466970_0038985_943_1584 211
83 3300044842 Ga0466957_0079429 Ga0466957_0079429_552_1193 211
84 3300045051 Ga0451576_0121004 Ga0451576_0121004_999_1661 211
85 3300045976 Ga0466967_0599755 Ga0466967_0599755_303_944 211
86 3300046472 Ga0495580_0140176 Ga0495580_0140176_395_1105 211
87 3300048917 Ga0496114_0028366 Ga0496114_0028366_197_838 211
88 3300048918 Ga0496115_0249735 Ga0496115_0249735_637_1278 211
89 3300048928 Ga0496125_0000897 Ga0496125_0000897_6993_7634 211
90 3300049585 Ga0501069_0010105 Ga0501069_0010105_2218_2868 211
91 3300049586 Ga0501070_0106226 Ga0501070_0106226_1033_1683 211
92 3300049586 Ga0501070_0122783 Ga0501070_0122783_134_784 211
93 3300049671 Ga0501238_007255 Ga0501238_007255_692_1333 211
94 3300049742 Ga0501080_0068695 Ga0501080_0068695_313_963 211
95 3300049823 Ga0501044_0104471 Ga0501044_0104471_1113_1754 211
96 3300050492 nmdc:mga0yw44_33131_c1 nmdc:mga0yw44_33131_c1_2012_2659 211
97 3300050512 nmdc:mga0n895_66728_c1 nmdc:mga0n895_66728_c1_521_1231 211
98 3300053090 Ga0500646_0000511 Ga0500646_0000511_5930_6577 211
99 3300053092 Ga0500583_0034210 Ga0500583_0034210_134_781 211
100 3300053133 Ga0500655_000812 Ga0500655_000812_4869_5516 211
101 3300053151 Ga0500604_0000223 Ga0500604_0000223_1118_1765 211
102 3300053157 Ga0500624_011483 Ga0500624_011483_234_875 211
103 3300005445 Ga0070708_100543862 Ga0070708_1005438621 212
104 3300005471 Ga0070698_100293832 Ga0070698_1002938323 212
105 3300013307 Ga0157372_10503084 Ga0157372_105030842 212
106 3300013307 Ga0157372_10598135 Ga0157372_105981351 212
107 3300025915 Ga0207693_10410305 Ga0207693_104103052 212
108 3300025928 Ga0207700_10000158 Ga0207700_1000015812 212
109 3300031239 Ga0265328_10000005 Ga0265328_10000005199 212
110 3300031240 Ga0265320_10144681 Ga0265320_101446812 212
111 3300031250 Ga0265331_10003341 Ga0265331_100033414 212
112 3300031251 Ga0265327_10000136 Ga0265327_1000013612 212
113 3300031251 Ga0265327_10000216 Ga0265327_10000216132 212
114 3300031911 Ga0307412_10169585 Ga0307412_101695852 212
115 3300036401 Ga0373937_0304509 Ga0373937_0304509_149_796 212
116 3300038726 Ga0400490_38197 Ga0400490_38197_961_1608 212
117 3300046674 Ga0495588_0161341 Ga0495588_0161341_145_792 212
118 3300053156 Ga0500622_0000002 Ga0500622_0000002_358185_358832 212
119 3300031239 Ga0265328_10005725 Ga0265328_100057257 213
120 3300031251 Ga0265327_10011992 Ga0265327_100119923 213
121 3300031665 Ga0316575_10001070 Ga0316575_100010703 213
122 3300031728 Ga0316578_10096371 Ga0316578_100963711 213
123 3300031995 Ga0307409_100033726 Ga0307409_1000337263 213
124 3300032137 Ga0316585_10025867 Ga0316585_100258672 213
125 3300035241 Ga0373961_0011897 Ga0373961_0011897_39_686 213
126 3300035241 Ga0373961_0103003 Ga0373961_0103003_81_764 213
127 3300036647 Ga0316582_0093538 Ga0316582_0093538_853_1554 213
128 3300049742 Ga0501080_0042583 Ga0501080_0042583_2431_3078 213
129 3300050496 nmdc:mga07m45_129429_c1 nmdc:mga07m45_129429_c1_409_1086 213
130 3300031507 Ga0307509_10186197 Ga0307509_101861972 219
131 3300031730 Ga0307516_10000386 Ga0307516_1000038630 219
132 3300041460 Ga0451802_0303482 Ga0451802_0303482_1363_2028 219
133 3300042129 Ga0450891_014910 Ga0450891_014910_36_710 219
134 3300053137 Ga0500561_0053008 Ga0500561_0053008_324_998 219
135 3300053158 Ga0500627_0175488 Ga0500627_0175488_140_814 219
136 3300003316 rootH1_10097771 rootH1_100977711 246
137 3300003322 rootL2_10053452 rootL2_100534522 246

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01712

dNK

Deoxynucleoside kinase

12

238

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
2jat-assembly1.cif.gz_B structure of deoxyadenosine kinase from m.mycoides with products dcmp and a flexible dcdp bound 0.8407 6 233
2jaq-assembly1.cif.gz_A structure of deoxyadenosine kinase from m. mycoides with bound dctp 0.8391 6 233
2jaq-assembly1.cif.gz_B structure of deoxyadenosine kinase from m. mycoides with bound dctp 0.8364 6 233
2jat-assembly1.cif.gz_A structure of deoxyadenosine kinase from m.mycoides with products dcmp and a flexible dcdp bound 0.8339 6 234
2jat-assembly1.cif.gz_B structure of deoxyadenosine kinase from m.mycoides with products dcmp and a flexible dcdp bound 0.8326 6 233
ID Description Score Start End Superfamily
af_Q2G0M0_4_200_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9176 6 230 3.40.50.300
af_Q2G0M0_4_200_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8865 6 230 3.40.50.300
af_Q54YL2_23_219_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8693 6 233 3.40.50.300
af_Q54YL2_23_219_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.8656 6 233 3.40.50.300
af_Q2G0M1_9_214_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.861 6 232 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A534ZTN0-F1-model_v4 Deoxynucleoside kinase 0.9582 154 243 GO:0005737
GO:0019136
AF-X1RY12-F1-model_v4 Deoxynucleoside kinase domain-containing protein 0.9555 154 242 GO:0005737
GO:0019136
AF-A0A6L7L2K4-F1-model_v4 deleted 0.955 151 243
AF-A0A351A6J3-F1-model_v4 Deoxynucleoside kinase 0.9546 152 244 GO:0005737
GO:0019136
AF-A0A7C1ETD3-F1-model_v4 Deoxynucleoside kinase 0.9474 4 242 GO:0005524
GO:0005737
GO:0019136

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pLDDT pTM Quality
81.72 0.79 High
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Predicted Structure (AlphaFold2)

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