F167350

General Info

Members Datasets Scaffolds Average Seq Length
136 94 129 633

Family's Representative Sequence

Representative Sequence 3300039437|Ga0436365_1534234|Ga0436365_1534234_546_2573
Length 675
Sequence MFAEAVAKGTLPPVNQRVPREPSLAELETIGKPGGELRMLMASPKDTRLMVVYGYARLVGYTPALALVPDMLEAADVTEGRVFTLHLRPGHKWSDGQPFTAEDFRYWFEDVAENPDLSTSGLPVALLPNGEQPKFEVLDAQTVRFSWSRPNPLFLPALAGPDPMFIYCPAHYLKQFHEKYADKKTLEGLVKQAGVRNWAALHAKMDAMYRNDNPDLPSLDPWILKTRPPSERIVFERNPYYYRVDGGGHQLPYIDRVIFSIANSKIIPAKTGAGESDLQARYLSFDDYTFLKAGEEANGYKVRLWRTGPGSQLALYPNLNVDDPVWRGLVRDVRFRHALSLATNRHEINQVIYFGLALEGQNTVLPQSPLYRPEYRDAWANFDLAEANRLLDLIGLKRESEGGQRLLPDGRPLDIIVENSGESTEQSDVLELIRDSWRQVGIRLFTRPSQLMLFRRRVFSGQTLMSVDKGIENGLATADMSPWEFAPTTQQQLEWPKWGQYYETKGQAGEAPDLPSAARLLELYNSWLNAGSSAEHAAIWHEMLKIWADEVFSIGLIGGVLQPVVVNDHLRNVPADGIYNWDPGAHFGIYRPDGFWFDNTVSPSASAGGQPVSSALPVWPARRGKWRGAFAARFACQTHLHCVRLRKLAREPFGEPAKPPRPGAGRDPPVHRSCS

Samples

Sample ID Description Type Environment
1 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
2 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
3 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
4 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
5 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
6 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
7 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
8 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
16 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
17 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
18 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
19 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
20 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
21 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
22 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
23 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
24 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
25 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
26 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
29 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
30 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
31 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
32 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
33 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
34 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
35 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
36 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
45 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
46 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
47 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
48 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
49 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
50 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
51 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
52 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
53 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
54 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
55 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
56 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
57 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
58 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
59 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
60 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
61 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
62 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
63 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
64 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
66 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
67 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
68 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
69 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
71 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
72 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
73 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
74 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
75 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
76 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
77 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
78 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
79 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
80 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
81 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
82 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
83 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
84 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
87 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
88 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
89 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
90 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
91 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
92 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
93 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
94 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.85
Metatranscriptomes 0
Isolates 5.15

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.09
Nodule 0
Rhizoplane 0
Rhizosphere 75
Stem 0
Stem Tuber 0
Unclassified 16.91

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10000067 3300003215 Bacteria 118869
2 Ga0070671_100012908 3300005355 Bacteria 6734
3 Ga0070711_100014698 3300005439 Bacteria 4938
4 Ga0070694_100004867 3300005444 Bacteria 8087
5 Ga0070694_100021160 3300005444 Bacteria 4153
6 Ga0070694_100058596 3300005444 Bacteria 2621
7 Ga0070681_10014136 3300005458 Bacteria 7945
8 Ga0070698_100003877 3300005471 Bacteria 16447
9 Ga0070698_100121123 3300005471 Bacteria 2576
10 Ga0070679_100070984 3300005530 Bacteria 3473
11 Ga0068853_100109580 3300005539 Bacteria 2451
12 Ga0070695_100029910 3300005545 Bacteria 3388
13 Ga0070704_100009622 3300005549 Bacteria 5852
14 Ga0081538_10004914 3300005981 Bacteria 12177
15 Ga0081538_10014029 3300005981 Bacteria 6301
16 Ga0081538_10033674 3300005981 Bacteria 3405
17 Ga0081540_1013833 3300005983 Bacteria 5219
18 Ga0070717_10001618 3300006028 Bacteria 15599
19 Ga0070717_10042500 3300006028 Bacteria 3707
20 Ga0070712_100003027 3300006175 Bacteria 10395
21 Ga0075428_100089390 3300006844 Bacteria 3360
22 Ga0075431_100012774 3300006847 Bacteria 8477
23 Ga0075429_100000081 3300006880 Bacteria 49207
24 Ga0099794_10013334 3300007265 Bacteria 3575
25 Ga0099795_10002719 3300007788 Bacteria 4232
26 Ga0111539_10028395 3300009094 Bacteria 6826
27 Ga0105245_10085449 3300009098 Bacteria 2892
28 Ga0105242_10001714 3300009176 Bacteria 17312
29 Ga0099796_10000610 3300010159 Bacteria 6193
30 Ga0182008_10015382 3300014497 Bacteria 3992
31 Ga0213875_10000393 3300021388 Bacteria 38600
32 Ga0213875_10000734 3300021388 Bacteria 24967
33 Ga0209130_1000282 3300025284 Bacteria 62561
34 Ga0209130_1000537 3300025284 Bacteria 38152
35 Ga0209025_1000179 3300025294 Bacteria 157965
36 Ga0209758_1000284 3300025297 Bacteria 100315
37 Ga0209758_1000847 3300025297 Bacteria 42599
38 Ga0207426_1000191 3300025302 Bacteria 151850
39 Ga0207426_1000196 3300025302 Bacteria 146687
40 Ga0209257_1000631 3300025304 Bacteria 56521
41 Ga0207684_10008474 3300025910 Bacteria 9145
42 Ga0207707_10021063 3300025912 Bacteria 5696
43 Ga0207693_10000418 3300025915 Bacteria 38629
44 Ga0207687_10048115 3300025927 Bacteria 2959
45 Ga0207700_10016384 3300025928 Bacteria 4922
46 Ga0207686_10003305 3300025934 Bacteria 8672
47 Ga0207639_10064573 3300026041 Bacteria 2838
48 Ga0265327_10023387 3300031251 Bacteria 3661
49 Ga0307513_10078847 3300031456 Bacteria 3405
50 Ga0373953_0012814 3300035117 Bacteria 2978
51 Ga0373927_0058555 3300035695 Bacteria 2492
52 Ga0373933_0017495 3300035724 Bacteria 4021
53 Ga0373937_0009989 3300036401 Bacteria 8275
54 Ga0373937_0013744 3300036401 Bacteria 7134
55 Ga0373937_0093719 3300036401 Bacteria 2785
56 Ga0436364_0143195 3300037853 Bacteria 55817
57 Ga0436364_1149423 3300037853 Bacteria 148108
58 Ga0436364_1373616 3300037853 Bacteria 99108
59 Ga0400483_029495 3300039062 Bacteria 6809
60 Ga0400483_055100 3300039062 Bacteria 9453
61 Ga0400483_070759 3300039062 Bacteria 3656
62 Ga0400483_213567 3300039062 Bacteria 12457
63 Ga0400483_231314 3300039062 Bacteria 3520
64 Ga0436365_1034188 3300039437 Bacteria 34077
65 Ga0436365_1534234 3300039437 Bacteria 4626
66 Ga0436360_0258008 3300039438 Bacteria 2048
67 Ga0436361_0545699 3300039447 Bacteria 2675
68 Ga0436363_0014227 3300039450 Bacteria 4931
69 Ga0436363_0465963 3300039450 Bacteria 4634
70 Ga0436363_1485355 3300039450 Bacteria 4550
71 Ga0466963_0093043 3300044694 Bacteria 2055
72 Ga0451576_0006617 3300045051 Bacteria 14166
73 Ga0466967_0046904 3300045976 Bacteria 3765
74 Ga0495610_0016474 3300046512 Bacteria 4252
75 Ga0495610_0017637 3300046512 Bacteria 4064
76 Ga0495610_0036407 3300046512 Bacteria 2515
77 Ga0495640_0061566 3300046533 Bacteria 2549
78 Ga0501033_0009733 3300049570 Bacteria 7387
79 Ga0501034_0019169 3300049571 Bacteria 7004
80 Ga0501036_0017824 3300049572 Bacteria 5943
81 Ga0501037_0008638 3300049573 Bacteria 7469
82 Ga0501038_0097056 3300049574 Bacteria 2459
83 Ga0501041_0005580 3300049577 Bacteria 7358
84 Ga0501041_0049453 3300049577 Bacteria 2561
85 Ga0501042_0047358 3300049578 Bacteria 3066
86 Ga0501043_0004827 3300049579 Bacteria 10910
87 Ga0501046_0004393 3300049580 Bacteria 12811
88 Ga0501046_0017822 3300049580 Bacteria 5923
89 Ga0501047_0012767 3300049581 Bacteria 7959
90 Ga0501047_0036222 3300049581 Bacteria 4768
91 Ga0501048_0013104 3300049582 Bacteria 6156
92 Ga0501067_0008146 3300049583 Bacteria 5822
93 Ga0501067_0032116 3300049583 Bacteria 2914
94 Ga0501068_0019921 3300049584 Bacteria 3903
95 Ga0501069_0000413 3300049585 Bacteria 19348
96 Ga0501070_0027137 3300049586 Bacteria 4803
97 Ga0501070_0091138 3300049586 Bacteria 2523
98 Ga0501072_0011004 3300049588 Bacteria 6902
99 Ga0501072_0020466 3300049588 Bacteria 5127
100 Ga0501072_0056031 3300049588 Bacteria 3107
101 Ga0501073_0018091 3300049589 Bacteria 5096
102 Ga0501074_0005195 3300049590 Bacteria 9357
103 Ga0501075_0088270 3300049591 Bacteria 2351
104 Ga0501076_0005108 3300049592 Bacteria 9397
105 Ga0501076_0136701 3300049592 Bacteria 1990
106 Ga0501079_0013639 3300049741 Bacteria 6197
107 Ga0501079_0021098 3300049741 Bacteria 4980
108 Ga0501080_0020469 3300049742 Bacteria 6125
109 Ga0501080_0030672 3300049742 Bacteria 5009
110 Ga0501080_0056502 3300049742 Bacteria 3655
111 Ga0501080_0069365 3300049742 Bacteria 3278
112 Ga0501083_0016150 3300049744 Bacteria 5228
113 Ga0501035_0005860 3300049822 Bacteria 11580
114 Ga0501035_0075464 3300049822 Bacteria 2982
115 Ga0501035_0080795 3300049822 Bacteria 2870
116 Ga0501044_0011158 3300049823 Bacteria 9744
117 Ga0501044_0034738 3300049823 Bacteria 5285
118 Ga0501044_0079026 3300049823 Bacteria 3334
119 Ga0501045_0108161 3300049824 Bacteria 2061
120 nmdc:mga05p37_133_c1 3300050507 Bacteria 68369
121 nmdc:mga09592_26_c1 3300050508 Bacteria 84260
122 Ga0495595_0033917 3300053084 Bacteria 2306
123 Ga0500568_0020298 3300053139 Bacteria 2877
124 Ga0500604_0003093 3300053151 Bacteria 4467
125 Ga0501084_0012683 3300054114 Bacteria 6983
126 Ga0501084_0034998 3300054114 Bacteria 4199
127 Ga0501082_0030077 3300060353 Bacteria 4679
128 Ga0501082_0033810 3300060353 Bacteria 4410
129 Ga0530510_0008433 3300061734 Bacteria 7184

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049574 Ga0501038_0097056 Ga0501038_0097056_18_1670 550
2 3300049577 Ga0501041_0049453 Ga0501041_0049453_639_2477 556
3 3300049588 Ga0501072_0056031 Ga0501072_0056031_1161_2999 556
4 3300039062 Ga0400483_055100 Ga0400483_055100_3430_5316 576
5 3300005981 Ga0081538_10004914 Ga0081538_100049145 579
6 3300049592 Ga0501076_0136701 Ga0501076_0136701_21_1763 579
7 3300005981 Ga0081538_10014029 Ga0081538_100140294 583
8 3300039062 Ga0400483_029495 Ga0400483_029495_4439_6232 589
9 3300039062 Ga0400483_213567 Ga0400483_213567_6876_8669 589
10 3300049822 Ga0501035_0080795 Ga0501035_0080795_403_2244 594
11 3300005981 Ga0081538_10033674 Ga0081538_100336742 598
12 3300049580 Ga0501046_0017822 Ga0501046_0017822_3940_5799 599
13 3300049588 Ga0501072_0011004 Ga0501072_0011004_4394_6253 599
14 3300049592 Ga0501076_0005108 Ga0501076_0005108_4186_6045 599
15 3300049741 Ga0501079_0013639 Ga0501079_0013639_3481_5340 599
16 3300049742 Ga0501080_0056502 Ga0501080_0056502_1744_3603 599
17 3300054114 Ga0501084_0034998 Ga0501084_0034998_447_2306 599
18 3300061734 Ga0530510_0008433 Ga0530510_0008433_1454_3313 599
19 3300039062 Ga0400483_070759 Ga0400483_070759_680_2566 600
20 3300039062 Ga0400483_231314 Ga0400483_231314_808_2694 600
21 3300025284 Ga0209130_1000537 Ga0209130_100053723 606
22 3300025297 Ga0209758_1000847 Ga0209758_10008477 606
23 3300025302 Ga0207426_1000196 Ga0207426_100019691 606
24 3300036401 Ga0373937_0093719 Ga0373937_0093719_273_2162 606
25 3300046512 Ga0495610_0016474 Ga0495610_0016474_2195_4102 606
26 3300049577 Ga0501041_0005580 Ga0501041_0005580_917_2791 606
27 3300049578 Ga0501042_0047358 Ga0501042_0047358_866_2728 606
28 3300049588 Ga0501072_0020466 Ga0501072_0020466_3182_5056 606
29 3300049741 Ga0501079_0021098 Ga0501079_0021098_87_1943 606
30 3300039437 Ga0436365_1534234 Ga0436365_1534234_546_2573 609
31 3300045051 Ga0451576_0006617 Ga0451576_0006617_5788_7674 609
32 3300049581 Ga0501047_0036222 Ga0501047_0036222_2257_4176 609
33 iso_pu_bacteria 2846952575 2846952627 612
34 3300007265 Ga0099794_10013334 Ga0099794_100133342 613
35 3300049742 Ga0501080_0030672 Ga0501080_0030672_2236_4158 613
36 3300009094 Ga0111539_10028395 Ga0111539_100283952 614
37 3300005444 Ga0070694_100058596 Ga0070694_1000585962 621
38 3300005539 Ga0068853_100109580 Ga0068853_1001095802 621
39 3300026041 Ga0207639_10064573 Ga0207639_100645732 621
40 3300031251 Ga0265327_10023387 Ga0265327_100233872 621
41 3300005549 Ga0070704_100009622 Ga0070704_1000096222 622
42 3300006844 Ga0075428_100089390 Ga0075428_1000893902 622
43 3300006847 Ga0075431_100012774 Ga0075431_1000127741 622
44 3300006880 Ga0075429_100000081 Ga0075429_10000008113 622
45 3300050507 nmdc:mga05p37_133_c1 nmdc:mga05p37_133_c1_6839_8725 622
46 3300050508 nmdc:mga09592_26_c1 nmdc:mga09592_26_c1_47695_49581 622
47 iso_pu_bacteria 2821443989 2821445749 622
48 iso_pu_bacteria 2848858292 2848861118 622
49 3300005444 Ga0070694_100004867 Ga0070694_1000048673 623
50 3300025284 Ga0209130_1000282 Ga0209130_10002825 623
51 3300025294 Ga0209025_1000179 Ga0209025_100017929 623
52 3300025302 Ga0207426_1000191 Ga0207426_100019152 623
53 3300046512 Ga0495610_0017637 Ga0495610_0017637_368_2263 623
54 iso_pu_bacteria 2597490356 2599102753 623
55 3300025928 Ga0207700_10016384 Ga0207700_100163844 624
56 3300039437 Ga0436365_1034188 Ga0436365_1034188_6122_8056 624
57 iso_pu_bacteria 2821443989 2821450194 624
58 3300039438 Ga0436360_0258008 Ga0436360_0258008_12_1919 625
59 3300046512 Ga0495610_0036407 Ga0495610_0036407_441_2348 625
60 3300053139 Ga0500568_0020298 Ga0500568_0020298_60_1964 625
61 iso_pu_bacteria 2522572158 2523103334 625
62 3300039450 Ga0436363_1485355 Ga0436363_1485355_1551_3479 626
63 iso_pu_bacteria 2844533157 2844538544 626
64 3300009098 Ga0105245_10085449 Ga0105245_100854492 627
65 3300009176 Ga0105242_10001714 Ga0105242_100017144 627
66 3300025927 Ga0207687_10048115 Ga0207687_100481152 627
67 3300025934 Ga0207686_10003305 Ga0207686_100033052 627
68 3300045976 Ga0466967_0046904 Ga0466967_0046904_755_2668 627
69 3300039447 Ga0436361_0545699 Ga0436361_0545699_470_2431 629
70 3300053151 Ga0500604_0003093 Ga0500604_0003093_1490_3382 629
71 3300005355 Ga0070671_100012908 Ga0070671_1000129083 630
72 3300044694 Ga0466963_0093043 Ga0466963_0093043_38_1966 630
73 3300005471 Ga0070698_100121123 Ga0070698_1001211231 631
74 3300007788 Ga0099795_10002719 Ga0099795_100027192 631
75 3300010159 Ga0099796_10000610 Ga0099796_100006105 631
76 3300025910 Ga0207684_10008474 Ga0207684_100084745 631
77 3300035695 Ga0373927_0058555 Ga0373927_0058555_391_2310 632
78 3300049570 Ga0501033_0009733 Ga0501033_0009733_4728_6677 632
79 3300049571 Ga0501034_0019169 Ga0501034_0019169_386_2335 632
80 3300049572 Ga0501036_0017824 Ga0501036_0017824_123_2072 632
81 3300049573 Ga0501037_0008638 Ga0501037_0008638_1863_3812 632
82 3300049579 Ga0501043_0004827 Ga0501043_0004827_4605_6554 632
83 3300049580 Ga0501046_0004393 Ga0501046_0004393_4357_6306 632
84 3300049581 Ga0501047_0012767 Ga0501047_0012767_3049_4998 632
85 3300049582 Ga0501048_0013104 Ga0501048_0013104_2423_4372 632
86 3300049583 Ga0501067_0008146 Ga0501067_0008146_2038_3987 632
87 3300049584 Ga0501068_0019921 Ga0501068_0019921_1341_3290 632
88 3300049585 Ga0501069_0000413 Ga0501069_0000413_2611_4560 632
89 3300049586 Ga0501070_0027137 Ga0501070_0027137_2470_4419 632
90 3300049590 Ga0501074_0005195 Ga0501074_0005195_1660_3609 632
91 3300049591 Ga0501075_0088270 Ga0501075_0088270_353_2275 632
92 3300049742 Ga0501080_0020469 Ga0501080_0020469_3346_5295 632
93 3300049744 Ga0501083_0016150 Ga0501083_0016150_2321_4270 632
94 3300049822 Ga0501035_0005860 Ga0501035_0005860_3127_5076 632
95 3300049823 Ga0501044_0011158 Ga0501044_0011158_3191_5140 632
96 3300049824 Ga0501045_0108161 Ga0501045_0108161_10_1959 632
97 3300054114 Ga0501084_0012683 Ga0501084_0012683_3555_5504 632
98 3300060353 Ga0501082_0030077 Ga0501082_0030077_1772_3721 632
99 3300005444 Ga0070694_100021160 Ga0070694_1000211603 634
100 3300005545 Ga0070695_100029910 Ga0070695_1000299102 634
101 3300035117 Ga0373953_0012814 Ga0373953_0012814_738_2714 634
102 3300035724 Ga0373933_0017495 Ga0373933_0017495_1435_3378 634
103 3300036401 Ga0373937_0009989 Ga0373937_0009989_3547_5490 634
104 3300036401 Ga0373937_0013744 Ga0373937_0013744_4889_6916 634
105 3300046533 Ga0495640_0061566 Ga0495640_0061566_113_2056 634
106 3300053084 Ga0495595_0033917 Ga0495595_0033917_218_2161 634
107 3300005439 Ga0070711_100014698 Ga0070711_1000146982 635
108 3300005458 Ga0070681_10014136 Ga0070681_100141367 635
109 3300005530 Ga0070679_100070984 Ga0070679_1000709841 635
110 3300005983 Ga0081540_1013833 Ga0081540_10138334 635
111 3300006028 Ga0070717_10042500 Ga0070717_100425002 635
112 3300006175 Ga0070712_100003027 Ga0070712_1000030272 635
113 3300025304 Ga0209257_1000631 Ga0209257_100063125 635
114 3300025912 Ga0207707_10021063 Ga0207707_100210632 635
115 3300025915 Ga0207693_10000418 Ga0207693_1000041823 635
116 3300037853 Ga0436364_0143195 Ga0436364_0143195_29364_31298 635
117 3300039450 Ga0436363_0014227 Ga0436363_0014227_326_2290 635
118 3300039450 Ga0436363_0465963 Ga0436363_0465963_1834_3792 635
119 3300049583 Ga0501067_0032116 Ga0501067_0032116_198_2111 635
120 3300049586 Ga0501070_0091138 Ga0501070_0091138_503_2413 635
121 3300049589 Ga0501073_0018091 Ga0501073_0018091_2330_4240 635
122 3300049742 Ga0501080_0069365 Ga0501080_0069365_486_2396 635
123 3300049822 Ga0501035_0075464 Ga0501035_0075464_577_2487 635
124 3300049823 Ga0501044_0034738 Ga0501044_0034738_3349_5259 635
125 3300060353 Ga0501082_0033810 Ga0501082_0033810_61_1974 635
126 3300003215 JGI25153J46596_10000067 JGI25153J46596_1000006715 636
127 3300005471 Ga0070698_100003877 Ga0070698_1000038772 636
128 3300006028 Ga0070717_10001618 Ga0070717_100016188 636
129 3300014497 Ga0182008_10015382 Ga0182008_100153821 636
130 3300021388 Ga0213875_10000393 Ga0213875_1000039310 636
131 3300021388 Ga0213875_10000734 Ga0213875_100007345 636
132 3300025297 Ga0209758_1000284 Ga0209758_100028415 636
133 3300031456 Ga0307513_10078847 Ga0307513_100788471 636
134 3300037853 Ga0436364_1149423 Ga0436364_1149423_45157_47106 636
135 3300037853 Ga0436364_1373616 Ga0436364_1373616_12955_14904 636
136 3300049823 Ga0501044_0079026 Ga0501044_0079026_112_2058 636

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00496

SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

66

491

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
7veq-assembly1.cif.gz_A crystal structure of bacterial chemotaxis-dependent pectin-binding protein sph1118 in an open conformation 0.9249 23 625
7veq-assembly1.cif.gz_A crystal structure of bacterial chemotaxis-dependent pectin-binding protein sph1118 in an open conformation 0.9147 23 625
4oeu-assembly2.cif.gz_B crystal structure of nikz from campylobacter jejuni in complex with ni(l-his) 0.8265 63 618
6i3g-assembly1.cif.gz_A crystal structure of a putative peptide binding protein appa from clostridium difficile 0.8185 60 625
6i3g-assembly1.cif.gz_A crystal structure of a putative peptide binding protein appa from clostridium difficile 0.817 60 625
ID Description Score Start End Superfamily
af_Q95Q05_80_233_3.30.870.30 Alpha Beta;2-Layer Sandwich;Endonuclease; Chain A;MITD, C-terminal phospholipase D-like domain 0.8386 439 478 3.30.870.30
2nooA02 Alpha Beta;Roll;Dipeptide-binding Protein; domain 3;Dipeptide-binding Protein; Domain 3 0.8307 338 584 3.10.105.10
1xs5A01 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.8292 440 493 3.40.190.10
1xocA03 Alpha Beta;Roll;Dipeptide-binding Protein; domain 3;Dipeptide-binding Protein; Domain 3 0.8183 338 584 3.10.105.10
1xocA03 Alpha Beta;Roll;Dipeptide-binding Protein; domain 3;Dipeptide-binding Protein; Domain 3 0.8117 338 584 3.10.105.10
ID Description Score Start End GO Terms
AF-A0A536WL58-F1-model_v4 ABC transporter substrate-binding protein 0.9897 330 624 GO:0015833
GO:1904680
AF-A0A442RUR0-F1-model_v4 ABC transporter substrate-binding protein 0.9885 21 626 GO:0015833
GO:0030288
GO:0043190
GO:1904680
AF-A0A531AR44-F1-model_v4 ABC transporter substrate-binding protein 0.9876 332 626 GO:0015833
GO:1904680
AF-A0A2T1HSW8-F1-model_v4 Peptide ABC transporter substrate-binding protein 0.9871 25 626 GO:0015833
GO:1904680
AF-K0VJY6-F1-model_v4 Extracellular solute-binding protein family 5 0.9869 332 626 GO:0015833
GO:1904680

Feature Viewer

pLDDT pTM Quality
92.37 0.88 High
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Predicted Structure (AlphaFold2)

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