F163347

General Info

Members Datasets Scaffolds Average Seq Length
135 47 270 261

Family's Representative Sequence

Representative Sequence 3300015262|Ga0182007_10029928|Ga0182007_100299282
Length 290
Sequence MAQRTVMASLRHDGALTLTKEGGPAMWLRTGCKLSFSVETPTPFILMLRPRSGAQQWVARESYTLIPSVQVLEYTDAYGNLCQRLTAPPGEFSIQTSADVLTDQVISVAPGAPFDEVPTLPADVLLYLLPSRYCESDRFAEMASAIVAGVAPGYDQVACITDWIRREVRFNPAANHTQMAATEVNEYREGVCRDLAHLGIALCRALSIPARIVAGYLHGLVPMDLHAWFEAYVGGRWYTFDATQDGPRGGRVTIGYGRDAADVAIFTQFGPALALHEMQVTVEMLEGAPG

Samples

Sample ID Description Type Environment
1 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
2 3300003577 Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_32 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
3 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
4 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
5 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
6 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
7 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
8 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
9 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
10 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
11 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
12 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
13 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
14 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
15 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
16 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
17 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
18 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
19 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
20 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
21 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
22 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
23 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
24 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
25 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
26 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
27 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
28 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
29 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
30 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
31 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
32 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
33 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
34 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
35 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
36 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
37 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
38 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
39 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
40 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
41 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
42 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
43 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
44 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
45 2740891818 Desulfofaba hansenii DSM 12642 Isolate Unclassified
46 2919476304 Duganella sp. 3397 Isolate Unclassified
47 8002745576 Marinomonas spartinae USM8 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.07
Metatranscriptomes 3.7
Isolates 2.22

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.74
Nodule 0.74
Rhizoplane 0.74
Rhizosphere 93.33
Stem 0
Stem Tuber 0
Unclassified 8.89

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0182007_10029928 3300015262 Bacteria 1863
2 Ga0007416J51690_1044436 3300003577 Bacteria 1211
3 Ga0079104_1005141 3300006946 Bacteria 5322
4 Ga0157371_10000018 3300013102 Bacteria 310522
5 Ga0182006_1000017 3300015261 Bacteria 299454
6 Ga0182005_1000007 3300015265 Bacteria 490994
7 Ga0163161_10029902 3300017792 Bacteria 3873
8 Ga0265327_10004592 3300031251 Bacteria 12145
9 Ga0265327_10119803 3300031251 Bacteria 1248
10 Ga0265316_10348564 3300031344 Bacteria 1072
11 Ga0307408_100344273 3300031548 Bacteria 1263
12 Ga0316575_10002228 3300031665 Bacteria 6469
13 Ga0316575_10029413 3300031665 Bacteria 2145
14 Ga0316575_10040222 3300031665 Unclassified 1847
15 Ga0316575_10051056 3300031665 Bacteria 1647
16 Ga0316575_10060844 3300031665 Bacteria 1509
17 Ga0316575_10075895 3300031665 Bacteria 1353
18 Ga0316579_10001836 3300031691 Bacteria 7848
19 Ga0316579_10011412 3300031691 Bacteria 3776
20 Ga0316579_10028938 3300031691 Bacteria 2525
21 Ga0316579_10030123 3300031691 Bacteria 2478
22 Ga0316579_10051241 3300031691 Bacteria 1931
23 Ga0316579_10131040 3300031691 Unclassified 1208
24 Ga0316579_10182361 3300031691 Bacteria 1015
25 Ga0316579_10193761 3300031691 Bacteria 982
26 Ga0316576_10005265 3300031727 Bacteria 7878
27 Ga0316576_10005966 3300031727 Bacteria 7525
28 Ga0316576_10029355 3300031727 Bacteria 3887
29 Ga0316576_10120685 3300031727 Bacteria 1968
30 Ga0316576_10142447 3300031727 Bacteria 1805
31 Ga0316576_10162279 3300031727 Unclassified 1686
32 Ga0316576_10256268 3300031727 Bacteria 1313
33 Ga0316578_10005461 3300031728 Bacteria 6169
34 Ga0316578_10024568 3300031728 Bacteria 3381
35 Ga0316578_10052821 3300031728 Bacteria 2382
36 Ga0316578_10054928 3300031728 Unclassified 2336
37 Ga0316578_10063738 3300031728 Bacteria 2174
38 Ga0316578_10097676 3300031728 Bacteria 1759
39 Ga0316578_10182115 3300031728 Bacteria 1266
40 Ga0316578_10206828 3300031728 Bacteria 1181
41 Ga0316578_10299460 3300031728 Unclassified 961
42 Ga0316577_10013501 3300031733 Bacteria 4467
43 Ga0316577_10016577 3300031733 Bacteria 4064
44 Ga0316577_10059310 3300031733 Bacteria 2136
45 Ga0316577_10074907 3300031733 Bacteria 1890
46 Ga0316577_10124983 3300031733 Bacteria 1446
47 Ga0316577_10132212 3300031733 Bacteria 1404
48 Ga0307414_10001365 3300032004 Bacteria 12626
49 Ga0316583_10009374 3300032133 Bacteria 3522
50 Ga0316583_10010049 3300032133 Bacteria 3410
51 Ga0316583_10017285 3300032133 Bacteria 2594
52 Ga0316583_10032392 3300032133 Bacteria 1859
53 Ga0316583_10049252 3300032133 Bacteria 1483
54 Ga0316585_10043976 3300032137 Bacteria 1426
55 Ga0316580_10004960 3300032139 Bacteria 3871
56 Ga0316580_10009678 3300032139 Bacteria 2901
57 Ga0316593_10007433 3300032168 Bacteria 3011
58 Ga0316593_10094030 3300032168 Unclassified 1057
59 Ga0316592_1006981 3300033524 Bacteria 2192
60 Ga0316587_1028799 3300033529 Bacteria 975
61 Ga0316574_0000967 3300035398 Bacteria 12857
62 Ga0316574_0002658 3300035398 Bacteria 9021
63 Ga0316574_0010445 3300035398 Bacteria 5249
64 Ga0316574_0021443 3300035398 Bacteria 3836
65 Ga0316574_0021602 3300035398 Bacteria 3823
66 Ga0316574_0024291 3300035398 Bacteria 3626
67 Ga0316574_0024433 3300035398 Bacteria 3616
68 Ga0316574_0026085 3300035398 Bacteria 3513
69 Ga0316574_0028629 3300035398 Bacteria 3361
70 Ga0316574_0043046 3300035398 Bacteria 2789
71 Ga0316574_0069769 3300035398 Bacteria 2219
72 Ga0316574_0079952 3300035398 Unclassified 2074
73 Ga0316574_0094608 3300035398 Bacteria 1908
74 Ga0316574_0106216 3300035398 Bacteria 1799
75 Ga0316574_0141781 3300035398 Bacteria 1548
76 Ga0316574_0253951 3300035398 Bacteria 1123
77 Ga0316582_0015874 3300036647 Bacteria 4319
78 Ga0316582_0016922 3300036647 Bacteria 4205
79 Ga0316582_0021168 3300036647 Bacteria 3837
80 Ga0316582_0023353 3300036647 Bacteria 3684
81 Ga0316582_0024147 3300036647 Bacteria 3634
82 Ga0316582_0029258 3300036647 Bacteria 3345
83 Ga0316582_0031234 3300036647 Bacteria 3254
84 Ga0316582_0038420 3300036647 Bacteria 2975
85 Ga0316582_0058736 3300036647 Unclassified 2460
86 Ga0316582_0093814 3300036647 Bacteria 1980
87 Ga0316582_0098935 3300036647 Bacteria 1930
88 Ga0316582_0104457 3300036647 Unclassified 1880
89 Ga0316582_0129270 3300036647 Bacteria 1695
90 Ga0316582_0146617 3300036647 Bacteria 1594
91 Ga0316582_0186303 3300036647 Unclassified 1413
92 Ga0316582_0214663 3300036647 Bacteria 1315
93 Ga0316582_0443023 3300036647 Bacteria 895
94 Ga0316584_0006315 3300036712 Bacteria 8027
95 Ga0316584_0021078 3300036712 Bacteria 4732
96 Ga0316584_0022039 3300036712 Bacteria 4641
97 Ga0316584_0023353 3300036712 Bacteria 4518
98 Ga0316584_0031614 3300036712 Bacteria 3914
99 Ga0316584_0037968 3300036712 Bacteria 3582
100 Ga0316584_0067795 3300036712 Bacteria 2674
101 Ga0316584_0091599 3300036712 Bacteria 2276
102 Ga0316584_0111339 3300036712 Bacteria 2049
103 Ga0316584_0120662 3300036712 Bacteria 1959
104 Ga0316584_0123152 3300036712 Bacteria 1937
105 Ga0316584_0132744 3300036712 Bacteria 1859
106 Ga0316584_0172756 3300036712 Bacteria 1602
107 Ga0316584_0176680 3300036712 Unclassified 1581
108 Ga0316584_0193124 3300036712 Bacteria 1504
109 Ga0316584_0220709 3300036712 Bacteria 1393
110 Ga0316584_0244795 3300036712 Bacteria 1311
111 Ga0316581_0014689 3300037588 Unclassified 2231
112 Ga0316581_0029351 3300037588 Bacteria 1651
113 Ga0316581_0066257 3300037588 Bacteria 1109
114 Ga0400484_01547 3300038725 Bacteria 5111
115 Ga0400488_35564 3300038741 Bacteria 2756
116 Ga0400483_075161 3300039062 Bacteria 103046
117 Ga0400487_51092 3300039110 Bacteria 1771
118 Ga0451577_0000168 3300042876 Bacteria 144187
119 Ga0453683_0305059 3300044673 Bacteria 1019
120 Ga0453684_0000642 3300044712 Bacteria 126116
121 Ga0453684_0118903 3300044712 Bacteria 3195
122 Ga0495638_0072746 3300046460 Bacteria 2100
123 Ga0495650_0010882 3300046471 Bacteria 5039
124 Ga0495583_0000217 3300046506 Bacteria 96747
125 Ga0495606_0000208 3300046507 Bacteria 103578
126 Ga0495637_0141607 3300046520 Bacteria 912
127 Ga0495648_0008564 3300046524 Bacteria 8033
128 Ga0495649_0129404 3300046694 Bacteria 1332
129 Ga0495673_0000236 3300047469 Bacteria 79618
130 Ga0496102_0040094 3300048905 Bacteria 4235
131 Ga0495678_002155 3300049459 Bacteria 13901
132 Ga0500618_027266 3300053125 Bacteria 1360
133 2740994785 2740891818 Bacteria 6711283
134 2919479942 2919476304 Bacteria 5888696
135 8002749780 8002745576 Bacteria 4840272
136 Ga0182007_10029928
137 Ga0007416J51690_1044436
138 Ga0079104_1005141
139 Ga0157371_10000018
140 Ga0182006_1000017
141 Ga0182005_1000007
142 Ga0163161_10029902
143 Ga0265327_10004592
144 Ga0265327_10119803
145 Ga0265316_10348564
146 Ga0307408_100344273
147 Ga0316575_10002228
148 Ga0316575_10029413
149 Ga0316575_10040222
150 Ga0316575_10051056
151 Ga0316575_10060844
152 Ga0316575_10075895
153 Ga0316579_10001836
154 Ga0316579_10011412
155 Ga0316579_10028938
156 Ga0316579_10030123
157 Ga0316579_10051241
158 Ga0316579_10131040
159 Ga0316579_10182361
160 Ga0316579_10193761
161 Ga0316576_10005265
162 Ga0316576_10005966
163 Ga0316576_10029355
164 Ga0316576_10120685
165 Ga0316576_10142447
166 Ga0316576_10162279
167 Ga0316576_10256268
168 Ga0316578_10005461
169 Ga0316578_10024568
170 Ga0316578_10052821
171 Ga0316578_10054928
172 Ga0316578_10063738
173 Ga0316578_10097676
174 Ga0316578_10182115
175 Ga0316578_10206828
176 Ga0316578_10299460
177 Ga0316577_10013501
178 Ga0316577_10016577
179 Ga0316577_10059310
180 Ga0316577_10074907
181 Ga0316577_10124983
182 Ga0316577_10132212
183 Ga0307414_10001365
184 Ga0316583_10009374
185 Ga0316583_10010049
186 Ga0316583_10017285
187 Ga0316583_10032392
188 Ga0316583_10049252
189 Ga0316585_10043976
190 Ga0316580_10004960
191 Ga0316580_10009678
192 Ga0316593_10007433
193 Ga0316593_10094030
194 Ga0316592_1006981
195 Ga0316587_1028799
196 Ga0316574_0000967
197 Ga0316574_0002658
198 Ga0316574_0010445
199 Ga0316574_0021443
200 Ga0316574_0021602
201 Ga0316574_0024291
202 Ga0316574_0024433
203 Ga0316574_0026085
204 Ga0316574_0028629
205 Ga0316574_0043046
206 Ga0316574_0069769
207 Ga0316574_0079952
208 Ga0316574_0094608
209 Ga0316574_0106216
210 Ga0316574_0141781
211 Ga0316574_0253951
212 Ga0316582_0015874
213 Ga0316582_0016922
214 Ga0316582_0021168
215 Ga0316582_0023353
216 Ga0316582_0024147
217 Ga0316582_0029258
218 Ga0316582_0031234
219 Ga0316582_0038420
220 Ga0316582_0058736
221 Ga0316582_0093814
222 Ga0316582_0098935
223 Ga0316582_0104457
224 Ga0316582_0129270
225 Ga0316582_0146617
226 Ga0316582_0186303
227 Ga0316582_0214663
228 Ga0316582_0443023
229 Ga0316584_0006315
230 Ga0316584_0021078
231 Ga0316584_0022039
232 Ga0316584_0023353
233 Ga0316584_0031614
234 Ga0316584_0037968
235 Ga0316584_0067795
236 Ga0316584_0091599
237 Ga0316584_0111339
238 Ga0316584_0120662
239 Ga0316584_0123152
240 Ga0316584_0132744
241 Ga0316584_0172756
242 Ga0316584_0176680
243 Ga0316584_0193124
244 Ga0316584_0220709
245 Ga0316584_0244795
246 Ga0316581_0014689
247 Ga0316581_0029351
248 Ga0316581_0066257
249 Ga0400484_01547
250 Ga0400488_35564
251 Ga0400483_075161
252 Ga0400487_51092
253 Ga0451577_0000168
254 Ga0453683_0305059
255 Ga0453684_0000642
256 Ga0453684_0118903
257 Ga0495638_0072746
258 Ga0495650_0010882
259 Ga0495583_0000217
260 Ga0495606_0000208
261 Ga0495637_0141607
262 Ga0495648_0008564
263 Ga0495649_0129404
264 Ga0495673_0000236
265 Ga0496102_0040094
266 Ga0495678_002155
267 Ga0500618_027266
268 2740994785
269 2919479942
270 8002749780

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01841

Transglut_core

Transglutaminase-like superfamily

140

242

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
8tid-assembly1.cif.gz_H combined linker domain of n-drc and associated proteins tetrahymena 0.8579 132 192
3isr-assembly1.cif.gz_B the crystal structure of a putative cysteine protease from cytophaga hutchinsonii to 1.9a 0.8578 2 265
3isr-assembly1.cif.gz_B the crystal structure of a putative cysteine protease from cytophaga hutchinsonii to 1.9a 0.8517 2 265
6jzc-assembly1.cif.gz_A structural basis of tubulin detyrosination 0.7129 130 225
7ob6-assembly1.cif.gz_A cpr-c4 - a conserved novel protease from the candidate phyla radiation 0.6428 98 223
ID Description Score Start End Superfamily
3isrC01 Alpha Beta;Roll;C8orf32 fold; 0.8758 80 247 3.10.620.30
3isrD02 Mainly Beta;Sandwich;Immunoglobulin-like; 0.8649 3 78 2.60.40.2250
af_A0A2R8Q272_11_129_3.10.620.30 Alpha Beta;Roll;C8orf32 fold; 0.8411 140 217 3.10.620.30
af_Q8C8H8_144_301_3.10.620.30 Alpha Beta;Roll;C8orf32 fold; 0.8304 112 218 3.10.620.30
af_P9WL93_122_301_3.10.620.30 Alpha Beta;Roll;C8orf32 fold; 0.8263 101 239 3.10.620.30
ID Description Score Start End GO Terms
AF-A0A257XAS5-F1-model_v4 Cysteine protease 0.9823 1 111 GO:0006508
GO:0008233
AF-A0A1G7GG44-F1-model_v4 Transglutaminase-like enzyme, putative cysteine protease 0.9809 1 260 GO:0006508
GO:0008233
AF-A0A378Q881-F1-model_v4 Uncharacterized protein conserved in bacteria 0.9672 2 261
AF-A0A257XAS5-F1-model_v4 Cysteine protease 0.9652 1 111 GO:0006508
GO:0008233
AF-A0A4Q3LLH5-F1-model_v4 Transglutaminase family protein 0.9626 1 258

Map