F161854

General Info

Members Datasets Scaffolds Average Seq Length
135 104 270 274

Family's Representative Sequence

Representative Sequence 3300003504|JGI26138J51218_100797|JGI26138J51218_1007971
Length 283
Sequence MKLVHTIADLRDALRPHDSPALVATMGNLHAGHLALVKTAKPLGDVTVASIFVNRLQFAPHEDFDTYPRTLEADCEKLQAAGCDVVFAPSEREMYPEPQGFKVHPPAELADILEGHFRPGFFTGVCTVVMKLFQCVFSEAKGRRTAMFGLKDYQQQLIMRRMVKQFALPIDIVGAPTERAADGLALSSRNMYLSEAERAEAVQLSLALRGLARDALAAADGLERQLPGLEQRAMQALAARGWQPDYLSVRRREDLQPPKPGDALVVLGAARLGKTRLIDNLEV

Samples

Sample ID Description Type Environment
1 3300003504 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM Metagenome Rhizosphere
2 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
5 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
6 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
9 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
10 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
11 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
12 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
13 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
14 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
15 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
16 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
17 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
18 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
19 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
20 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
21 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
22 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
23 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
24 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
25 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
26 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
27 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
28 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
36 3300027378 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes) (version 2) Metagenome Rhizosphere
37 3300027395 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes) (version 2) Metagenome Rhizosphere
38 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
39 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
40 3300027614 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) Metagenome Rhizosphere
41 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
43 3300030733 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 2 Metagenome Rhizosphere
44 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
45 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
46 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
47 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
48 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
49 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
50 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
51 3300034820 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 Metagenome Rhizosphere
52 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
53 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
54 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
55 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
56 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
57 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
58 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
59 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
60 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
61 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
62 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
63 3300042532 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0126L_E14_070516_92 Metagenome Rhizosphere
64 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
65 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
66 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
67 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
68 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
69 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
70 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
71 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
72 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
73 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
74 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
75 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
76 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
77 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
78 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
79 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
80 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
81 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
82 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
83 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
84 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
85 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
86 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
87 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
88 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
89 3300049517 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_B_5_control Metagenome Rhizosphere
90 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
91 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
92 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
93 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
94 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
95 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
96 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
97 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
98 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
99 3300053726 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 endosphere Metagenome Endosphere
100 2585428058 Methylibium sp. CF468 Isolate Rhizosphere
101 2643221592 Rhizobacter sp. Root16D2 Isolate Unclassified
102 2643221625 Rhizobacter sp. Root29 Isolate Unclassified
103 2643221648 Rhizobacter sp. Root1238 Isolate Unclassified
104 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 96.3
Metatranscriptomes 0
Isolates 3.7

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 18.52
Nodule 2.22
Rhizoplane 4.44
Rhizosphere 66.67
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI26138J51218_100797 3300003504 Bacteria 1185
2 JGI25153J46596_10002983 3300003215 Bacteria 9573
3 rootH1_10050204 3300003316 Bacteria 3281
4 Ga0055524_1000045 3300003775 Bacteria 151148
5 Ga0055524_1002597 3300003775 Bacteria 9193
6 Ga0055530_10002914 3300003791 Bacteria 10365
7 Ga0055530_10024928 3300003791 Bacteria 1681
8 Ga0055540_1000002 3300003792 Bacteria 436954
9 Ga0070658_10089069 3300005327 Bacteria 2541
10 Ga0070658_10111687 3300005327 Bacteria 2265
11 Ga0070658_10168132 3300005327 Bacteria 1841
12 Ga0070690_100299384 3300005330 Bacteria 1153
13 Ga0070662_100010664 3300005457 Bacteria 6045
14 Ga0068855_100026119 3300005563 Bacteria 6986
15 Ga0068855_100183047 3300005563 Bacteria 2368
16 Ga0068856_100091787 3300005614 Bacteria 3021
17 Ga0075363_100032965 3300006048 Bacteria 2694
18 Ga0075370_10030777 3300006353 Bacteria 2996
19 Ga0075430_100196735 3300006846 Bacteria 1675
20 Ga0075429_100519003 3300006880 Bacteria 1044
21 Ga0079104_1000839 3300006946 Bacteria 25542
22 Ga0079104_1028236 3300006946 Bacteria 1428
23 Ga0105245_10071099 3300009098 Bacteria 3159
24 Ga0105243_10073038 3300009148 Bacteria 2778
25 Ga0157369_10189179 3300013105 Bacteria 2163
26 Ga0157376_10076760 3300014969 Bacteria 2855
27 Ga0207427_100566 3300025231 Bacteria 18669
28 Ga0209759_1005433 3300025256 Bacteria 4467
29 Ga0209758_1000096 3300025297 Bacteria 231496
30 Ga0209050_1001035 3300025298 Bacteria 34509
31 Ga0209050_1019185 3300025298 Bacteria 2612
32 Ga0209256_1000143 3300025299 Bacteria 151331
33 Ga0209051_1000024 3300025303 Bacteria 437007
34 Ga0209051_1015272 3300025303 Bacteria 3542
35 Ga0209051_1024125 3300025303 Bacteria 2509
36 Ga0209051_1062233 3300025303 Bacteria 1168
37 Ga0209257_1000079 3300025304 Bacteria 316420
38 Ga0207695_10044248 3300025913 Bacteria 4736
39 Ga0207687_10083145 3300025927 Bacteria 2317
40 Ga0207706_10019948 3300025933 Bacteria 6026
41 Ga0207709_10005883 3300025935 Bacteria 6924
42 Ga0207689_10065636 3300025942 Bacteria 2985
43 Ga0207667_10033187 3300025949 Bacteria 5553
44 Ga0207677_10193053 3300026023 Bacteria 1612
45 Ga0209281_1000307 3300027111 Bacteria 87401
46 Ga0209981_1007553 3300027378 Bacteria 1468
47 Ga0209996_1012985 3300027395 Bacteria 1122
48 Ga0209995_1009701 3300027471 Bacteria 1558
49 Ga0209968_1000732 3300027526 Bacteria 5063
50 Ga0209970_1000136 3300027614 Bacteria 11085
51 Ga0209966_1000001 3300027695 Bacteria 139125
52 Ga0307515_10000777 3300028794 Bacteria 73454
53 Ga0314311_1010055 3300030733 Bacteria 5592
54 Ga0265331_10002523 3300031250 Bacteria 12338
55 Ga0307513_10000117 3300031456 Bacteria 110951
56 Ga0307509_10155473 3300031507 Bacteria 2194
57 Ga0307408_100329709 3300031548 Bacteria 1288
58 Ga0307516_10018878 3300031730 Bacteria 7157
59 Ga0307516_10125659 3300031730 Bacteria 2350
60 Ga0307416_100261282 3300032002 Bacteria 1692
61 Ga0307414_10286020 3300032004 Bacteria 1388
62 Ga0373959_0007975 3300034820 Bacteria 1790
63 Ga0373931_0041643 3300035691 Bacteria 2413
64 Ga0373931_0044507 3300035691 Bacteria 2341
65 Ga0373931_0047992 3300035691 Bacteria 2262
66 Ga0395899_0292442 3300037312 Bacteria 1105
67 Ga0395900_0000131 3300037418 Bacteria 125554
68 Ga0395900_0205860 3300037418 Bacteria 1989
69 Ga0395900_0234314 3300037418 Bacteria 1845
70 Ga0395898_0001532 3300037466 Bacteria 31823
71 Ga0395898_0192423 3300037466 Bacteria 1949
72 Ga0395905_0000591 3300037471 Bacteria 48762
73 Ga0395905_0000828 3300037471 Bacteria 40415
74 Ga0395905_0002886 3300037471 Bacteria 18779
75 Ga0395905_0010930 3300037471 Bacteria 8785
76 Ga0395905_0020208 3300037471 Bacteria 6308
77 Ga0395905_0051257 3300037471 Bacteria 3865
78 Ga0395901_0015526 3300038443 Bacteria 7756
79 Ga0395901_0056410 3300038443 Bacteria 4086
80 Ga0395901_0077414 3300038443 Bacteria 3471
81 Ga0439447_013943 3300041407 Bacteria 2268
82 Ga0451791_0185739 3300041451 Bacteria 1516
83 Ga0451802_1327502 3300041460 Bacteria 2113
84 Ga0439446_0044228 3300042156 Bacteria 1317
85 Ga0439459_0049026 3300042438 Bacteria 921
86 Ga0450893_0016270 3300042532 Bacteria 1258
87 Ga0451577_0000190 3300042876 Bacteria 130692
88 Ga0451577_0068914 3300042876 Bacteria 3154
89 Ga0466969_0000017 3300044656 Bacteria 103792
90 Ga0453683_0004933 3300044673 Bacteria 9377
91 Ga0453683_0019697 3300044673 Bacteria 4319
92 Ga0466965_0068951 3300044683 Bacteria 1776
93 Ga0466966_0062019 3300044684 Bacteria 2357
94 Ga0466961_0308684 3300044693 Bacteria 965
95 Ga0466964_0019001 3300044706 Bacteria 2640
96 Ga0453684_0000618 3300044712 Bacteria 129995
97 Ga0453684_0079331 3300044712 Bacteria 4104
98 Ga0453684_0469259 3300044712 Bacteria 1398
99 Ga0466957_0063058 3300044842 Bacteria 2277
100 Ga0466960_0098588 3300044901 Bacteria 1501
101 Ga0466959_0000287 3300045049 Bacteria 30550
102 Ga0451576_0001628 3300045051 Bacteria 37621
103 Ga0451576_0010730 3300045051 Bacteria 10487
104 Ga0451576_0017983 3300045051 Bacteria 7757
105 Ga0466967_0005385 3300045976 Bacteria 8858
106 Ga0466967_0128785 3300045976 Bacteria 2347
107 Ga0495629_0242708 3300046459 Bacteria 1240
108 Ga0495650_0013343 3300046471 Bacteria 4350
109 Ga0495585_0022725 3300046492 Bacteria 3600
110 Ga0495583_0000328 3300046506 Bacteria 75213
111 Ga0495606_0002309 3300046507 Bacteria 22476
112 Ga0495621_0023477 3300046539 Bacteria 2052
113 Ga0495669_0089252 3300046684 Bacteria 1422
114 Ga0495649_0001879 3300046694 Bacteria 15359
115 Ga0496104_0092610 3300048907 Bacteria 2890
116 Ga0496108_0560899 3300048911 Bacteria 996
117 Ga0496114_0000832 3300048917 Bacteria 23157
118 Ga0496114_0514012 3300048917 Bacteria 1059
119 Ga0501292_003829 3300049515 Bacteria 2031
120 Ga0501294_005084 3300049517 Bacteria 1244
121 Ga0501198_000038 3300049649 Bacteria 51689
122 Ga0501222_000037 3300049662 Bacteria 51656
123 nmdc:mga0k408_26437_c1 3300050493 Bacteria 3290
124 nmdc:mga07m45_71803_c1 3300050496 Bacteria 1970
125 nmdc:mga09592_471015_c1 3300050508 Bacteria 1083
126 Ga0500635_0222624 3300053080 Bacteria 737
127 Ga0500651_0054761 3300053093 Bacteria 2499
128 Ga0500564_060760 3300053138 Bacteria 1715
129 Ga0500590_014654 3300053148 Bacteria 4042
130 Ga0500584_143973 3300053726 Bacteria 903
131 2587734332 2585428058 Bacteria 6853932
132 2643969831 2643221592 Bacteria 6608788
133 2644141952 2643221625 Bacteria 6512927
134 2644273330 2643221648 Bacteria 6521465
135 2919704182 2919704043 Bacteria 5560311
136 JGI26138J51218_100797
137 JGI25153J46596_10002983
138 rootH1_10050204
139 Ga0055524_1000045
140 Ga0055524_1002597
141 Ga0055530_10002914
142 Ga0055530_10024928
143 Ga0055540_1000002
144 Ga0070658_10089069
145 Ga0070658_10111687
146 Ga0070658_10168132
147 Ga0070690_100299384
148 Ga0070662_100010664
149 Ga0068855_100026119
150 Ga0068855_100183047
151 Ga0068856_100091787
152 Ga0075363_100032965
153 Ga0075370_10030777
154 Ga0075430_100196735
155 Ga0075429_100519003
156 Ga0079104_1000839
157 Ga0079104_1028236
158 Ga0105245_10071099
159 Ga0105243_10073038
160 Ga0157369_10189179
161 Ga0157376_10076760
162 Ga0207427_100566
163 Ga0209759_1005433
164 Ga0209758_1000096
165 Ga0209050_1001035
166 Ga0209050_1019185
167 Ga0209256_1000143
168 Ga0209051_1000024
169 Ga0209051_1015272
170 Ga0209051_1024125
171 Ga0209051_1062233
172 Ga0209257_1000079
173 Ga0207695_10044248
174 Ga0207687_10083145
175 Ga0207706_10019948
176 Ga0207709_10005883
177 Ga0207689_10065636
178 Ga0207667_10033187
179 Ga0207677_10193053
180 Ga0209281_1000307
181 Ga0209981_1007553
182 Ga0209996_1012985
183 Ga0209995_1009701
184 Ga0209968_1000732
185 Ga0209970_1000136
186 Ga0209966_1000001
187 Ga0307515_10000777
188 Ga0314311_1010055
189 Ga0265331_10002523
190 Ga0307513_10000117
191 Ga0307509_10155473
192 Ga0307408_100329709
193 Ga0307516_10018878
194 Ga0307516_10125659
195 Ga0307416_100261282
196 Ga0307414_10286020
197 Ga0373959_0007975
198 Ga0373931_0041643
199 Ga0373931_0044507
200 Ga0373931_0047992
201 Ga0395899_0292442
202 Ga0395900_0000131
203 Ga0395900_0205860
204 Ga0395900_0234314
205 Ga0395898_0001532
206 Ga0395898_0192423
207 Ga0395905_0000591
208 Ga0395905_0000828
209 Ga0395905_0002886
210 Ga0395905_0010930
211 Ga0395905_0020208
212 Ga0395905_0051257
213 Ga0395901_0015526
214 Ga0395901_0056410
215 Ga0395901_0077414
216 Ga0439447_013943
217 Ga0451791_0185739
218 Ga0451802_1327502
219 Ga0439446_0044228
220 Ga0439459_0049026
221 Ga0450893_0016270
222 Ga0451577_0000190
223 Ga0451577_0068914
224 Ga0466969_0000017
225 Ga0453683_0004933
226 Ga0453683_0019697
227 Ga0466965_0068951
228 Ga0466966_0062019
229 Ga0466961_0308684
230 Ga0466964_0019001
231 Ga0453684_0000618
232 Ga0453684_0079331
233 Ga0453684_0469259
234 Ga0466957_0063058
235 Ga0466960_0098588
236 Ga0466959_0000287
237 Ga0451576_0001628
238 Ga0451576_0010730
239 Ga0451576_0017983
240 Ga0466967_0005385
241 Ga0466967_0128785
242 Ga0495629_0242708
243 Ga0495650_0013343
244 Ga0495585_0022725
245 Ga0495583_0000328
246 Ga0495606_0002309
247 Ga0495621_0023477
248 Ga0495669_0089252
249 Ga0495649_0001879
250 Ga0496104_0092610
251 Ga0496108_0560899
252 Ga0496114_0000832
253 Ga0496114_0514012
254 Ga0501292_003829
255 Ga0501294_005084
256 Ga0501198_000038
257 Ga0501222_000037
258 nmdc:mga0k408_26437_c1
259 nmdc:mga07m45_71803_c1
260 nmdc:mga09592_471015_c1
261 Ga0500635_0222624
262 Ga0500651_0054761
263 Ga0500564_060760
264 Ga0500590_014654
265 Ga0500584_143973
266 2587734332
267 2643969831
268 2644141952
269 2644273330
270 2919704182

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02569

Pantoate_ligase

Pantoate-beta-alanine ligase

2

282

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
3uk2-assembly1.cif.gz_B the structure of pantothenate synthetase from burkholderia thailandensis 0.9199 1 277
5ucr-assembly1.cif.gz_A crystal structure of a pantoate-beta-alanine ligase from neisseria gonorrhoeae with bound amppnp and alanine 0.918 1 276
3uk2-assembly1.cif.gz_B the structure of pantothenate synthetase from burkholderia thailandensis 0.9167 1 277
5kwv-assembly1.cif.gz_A crystal structure of a pantoate-beta-alanine ligase from neisseria gonorrhoeae with bound amppnp 0.9094 1 276
5ucr-assembly1.cif.gz_B crystal structure of a pantoate-beta-alanine ligase from neisseria gonorrhoeae with bound amppnp and alanine 0.9047 1 277
ID Description Score Start End Superfamily
5kwvA02 Alpha Beta;2-Layer Sandwich;Pantoate--beta-alanine Ligase; Chain: A,domain 2;Pantoate-beta-alanine ligase, C-terminal domain 0.9309 175 275 3.30.1300.10
5kwvA02 Alpha Beta;2-Layer Sandwich;Pantoate--beta-alanine Ligase; Chain: A,domain 2;Pantoate-beta-alanine ligase, C-terminal domain 0.922 175 275 3.30.1300.10
3q12A02 Alpha Beta;2-Layer Sandwich;Pantoate--beta-alanine Ligase; Chain: A,domain 2;Pantoate-beta-alanine ligase, C-terminal domain 0.9035 175 276 3.30.1300.10
3innA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.8645 2 174 3.40.50.620
3imeB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.8622 1 169 3.40.50.620
ID Description Score Start End GO Terms
AF-A0A4Q2LU11-F1-model_v4 deleted 0.9541 189 277
AF-A0A4Q2LU11-F1-model_v4 deleted 0.9438 189 277
AF-A0A855HH75-F1-model_v4 deleted 0.9327 128 250
AF-A1WDW5-F1-model_v4 Pantothenate synthetase (PS) (EC 6.3.2.1) (Pantoate--beta-alanine ligase) (Pantoate-activating enzyme) 0.9223 1 277 GO:0004592
GO:0005524
GO:0005829
GO:0015940
AF-A0A661FE09-F1-model_v4 pantoate--beta-alanine ligase (AMP-forming) (EC 6.3.2.1) (Pantoate-activating enzyme) 0.922 120 277 GO:0004592
GO:0005524
GO:0005829
GO:0015940

Map