F154940

General Info

Members Datasets Scaffolds Average Seq Length
133 62 133 304

Family's Representative Sequence

Representative Sequence 3300005295|Ga0065707_10084761|Ga0065707_100847617
Length 345
Sequence MPAVEALFAKIVLRLQVSRKPKAFNPSLTVFPCFLGTESSVMQLTFATRPSALARWQTARVIQLLQAAHPGLECSEHVITTTGDRTLDLPLPEIGGKGLFTSELENALLLGDVHAAVHSLKDLPVEDTPGIVIAAIPEREAVHDVLVSTNGLTLSSLPEGARVGTCSPRRTAQLLMQRPDLTILPIRGNVDSRLRKVWNGEYDAIVLAKAGLTRLGLQEHISEVFPLEIMLPAPGQGALAVQCLADDNETLELLTAIHDPVTAAAVDAERAFLAGLGGGCSLPVAAFAEKNNGTIILTGAVISADGKQAIRLSAVDKEPHELGERLAELVLERGAAELLNASVGT

Samples

Sample ID Description Type Environment
1 2162886006 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v1 Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
4 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
5 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
6 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
7 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
8 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
9 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
10 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
11 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
12 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
13 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
14 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
15 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
16 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
17 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
18 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
19 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
20 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
21 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
22 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
30 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
31 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
32 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
33 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
34 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
35 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
36 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
37 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
38 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
39 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
40 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
41 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
42 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
43 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
44 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
45 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
46 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
47 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
48 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
49 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
50 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
51 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
52 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
53 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
54 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
55 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
56 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
57 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
58 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
59 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
60 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
61 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
62 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.25
Metatranscriptomes 0.75
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 96.24
Stem 0
Stem Tuber 0
Unclassified 3.76

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL3b_contig_3064105 2162886006 Bacteria 2348
2 SwRhRL2b_contig_1188867 2162886007 Bacteria 6940
3 JGI25406J46586_10003503 3300003203 Bacteria 7371
4 Ga0065704_10000469 3300005289 Bacteria 19556
5 Ga0065704_10070649 3300005289 Bacteria 18371
6 Ga0065704_10110674 3300005289 Bacteria 1975
7 Ga0065707_10000455 3300005295 Bacteria 78106
8 Ga0065707_10012419 3300005295 Bacteria 2483
9 Ga0065707_10083308 3300005295 Bacteria 9584
10 Ga0065707_10084300 3300005295 Bacteria 7375
11 Ga0065707_10084761 3300005295 Bacteria 6806
12 Ga0065707_10092957 3300005295 Bacteria 3693
13 Ga0070698_100180316 3300005471 Unclassified 2051
14 Ga0070699_100005892 3300005518 Bacteria 10709
15 Ga0070704_100235928 3300005549 Bacteria 1495
16 Ga0068859_100080178 3300005617 Bacteria 3305
17 Ga0068864_100212265 3300005618 Bacteria 1783
18 Ga0068862_100020737 3300005844 Bacteria 5489
19 Ga0068862_100173936 3300005844 Unclassified 1929
20 Ga0068862_100291941 3300005844 Bacteria 1497
21 Ga0081539_10005172 3300005985 Bacteria 13559
22 Ga0075428_100007710 3300006844 Bacteria 11926
23 Ga0075428_100060984 3300006844 Bacteria 4130
24 Ga0075431_100152496 3300006847 Bacteria 2379
25 Ga0075431_100255592 3300006847 Bacteria 1779
26 Ga0075433_10109412 3300006852 Bacteria 2452
27 Ga0075434_100397624 3300006871 Unclassified 1399
28 Ga0075429_100001377 3300006880 Bacteria 19885
29 Ga0075429_100002682 3300006880 Bacteria 14982
30 Ga0075429_100018785 3300006880 Bacteria 5987
31 Ga0075429_100079150 3300006880 Bacteria 2865
32 Ga0075429_100171205 3300006880 Bacteria 1902
33 Ga0097620_100080176 3300006931 Bacteria 3305
34 Ga0114129_10000846 3300009147 Bacteria 39632
35 Ga0114129_10004494 3300009147 Bacteria 19680
36 Ga0114129_10013356 3300009147 Bacteria 11700
37 Ga0114129_10018114 3300009147 Bacteria 10032
38 Ga0114129_10090444 3300009147 Bacteria 4243
39 Ga0114129_10092357 3300009147 Bacteria 4193
40 Ga0114129_10104166 3300009147 Bacteria 3921
41 Ga0114129_10155337 3300009147 Archaea 3129
42 Ga0114129_10180476 3300009147 Bacteria 2873
43 Ga0114129_10190158 3300009147 Bacteria 2788
44 Ga0114129_10201909 3300009147 Bacteria 2692
45 Ga0105249_10002276 3300009553 Bacteria 16668
46 Ga0105249_10007991 3300009553 Bacteria 9222
47 Ga0105246_10040922 3300011119 Unclassified 3130
48 Ga0207646_10160274 3300025922 Bacteria 2030
49 Ga0207712_10072315 3300025961 Bacteria 2483
50 Ga0207712_10216745 3300025961 Bacteria 1528
51 Ga0207708_10185736 3300026075 Bacteria 1652
52 Ga0207708_10201899 3300026075 Bacteria 1586
53 Ga0207676_10186382 3300026095 Unclassified 1822
54 Ga0207674_10378546 3300026116 Bacteria 1368
55 Ga0207675_100524168 3300026118 Bacteria 1181
56 Ga0268265_10075078 3300028380 Bacteria 2647
57 Ga0268265_10170420 3300028380 Unclassified 1860
58 Ga0268265_10249556 3300028380 Bacteria 1571
59 Ga0268264_10460356 3300028381 Bacteria 1234
60 Ga0316576_10135893 3300031727 Bacteria 1850
61 Ga0307405_10036440 3300031731 Bacteria 2948
62 Ga0316577_10069483 3300031733 Bacteria 1968
63 Ga0307413_10063306 3300031824 Bacteria 2293
64 Ga0307410_10007493 3300031852 Bacteria 5977
65 Ga0307407_10096689 3300031903 Bacteria 1823
66 Ga0307407_10182736 3300031903 Bacteria 1391
67 Ga0307412_10179163 3300031911 Bacteria 1592
68 Ga0307409_100081910 3300031995 Bacteria 2611
69 Ga0307415_100069005 3300032126 Bacteria 2477
70 Ga0307415_100424562 3300032126 Unclassified 1142
71 Ga0316593_10003202 3300032168 Bacteria 4023
72 Ga0373954_0000894 3300035118 Bacteria 11603
73 Ga0373956_0000091 3300035119 Bacteria 30173
74 Ga0316574_0030393 3300035398 Bacteria 3271
75 Ga0316574_0191610 3300035398 Bacteria 1315
76 Ga0373927_0000011 3300035695 Bacteria 182648
77 Ga0373933_0021052 3300035724 Bacteria 3700
78 Ga0316582_0099819 3300036647 Bacteria 1921
79 Ga0316582_0115314 3300036647 Bacteria 1792
80 Ga0316584_0029381 3300036712 Bacteria 4057
81 Ga0316584_0103996 3300036712 Bacteria 2126
82 Ga0400484_25454 3300038725 Bacteria 1678
83 Ga0400483_008053 3300039062 Bacteria 1160
84 Ga0400489_03426 3300039093 Bacteria 1091
85 Ga0400489_61067 3300039093 Bacteria 1816
86 Ga0400487_58149 3300039110 Unclassified 1018
87 Ga0451577_0142599 3300042876 Bacteria 2153
88 Ga0451577_0159819 3300042876 Unclassified 2029
89 Ga0451577_0206797 3300042876 Bacteria 1772
90 Ga0451577_0437160 3300042876 Unclassified 1188
91 Ga0453683_0000129 3300044673 Bacteria 110609
92 Ga0453683_0015697 3300044673 Bacteria 4899
93 Ga0453683_0123226 3300044673 Bacteria 1632
94 Ga0453683_0126549 3300044673 Bacteria 1609
95 Ga0453683_0210722 3300044673 Bacteria 1234
96 Ga0453684_0001791 3300044712 Bacteria 57070
97 Ga0453684_0002366 3300044712 Bacteria 46053
98 Ga0453684_0008583 3300044712 Bacteria 18228
99 Ga0453684_0009288 3300044712 Bacteria 17257
100 Ga0453684_0009836 3300044712 Bacteria 16564
101 Ga0453684_0018363 3300044712 Bacteria 10739
102 Ga0453684_0045522 3300044712 Bacteria 5851
103 Ga0453684_0051884 3300044712 Bacteria 5369
104 Ga0453684_0136790 3300044712 Bacteria 2932
105 Ga0453684_0139113 3300044712 Bacteria 2902
106 Ga0453684_0318742 3300044712 Bacteria 1761
107 Ga0453684_0378154 3300044712 Bacteria 1591
108 Ga0453684_0450521 3300044712 Bacteria 1433
109 Ga0451576_0000240 3300045051 Bacteria 134073
110 Ga0451576_0001491 3300045051 Bacteria 39552
111 Ga0451576_0001738 3300045051 Bacteria 35810
112 Ga0451576_0016901 3300045051 Bacteria 8037
113 Ga0451576_0221352 3300045051 Bacteria 1976
114 Ga0451576_0435608 3300045051 Unclassified 1376
115 Ga0501075_0247183 3300049591 Bacteria 1360
116 Ga0501076_0202041 3300049592 Unclassified 1623
117 Ga0501079_0250004 3300049741 Unclassified 1386
118 nmdc:mga05p37_139994_c1 3300050507 Bacteria 2965
119 nmdc:mga05p37_145384_c1 3300050507 Bacteria 2904
120 nmdc:mga05p37_17797_c1 3300050507 Bacteria 8576
121 nmdc:mga05p37_21394_c1 3300050507 Bacteria 7834
122 nmdc:mga05p37_217_c1 3300050507 Bacteria 57809
123 nmdc:mga05p37_35454_c1 3300050507 Bacteria 5014
124 nmdc:mga05p37_408668_c1 3300050507 Bacteria 1583
125 nmdc:mga05p37_7415_c1 3300050507 Bacteria 12940
126 nmdc:mga05p37_83472_c1 3300050507 Unclassified 3936
127 nmdc:mga05p37_887_c1 3300050507 Bacteria 33743
128 nmdc:mga09592_24066_c1 3300050508 Bacteria 5034
129 nmdc:mga09592_278827_c1 3300050508 Bacteria 1450
130 nmdc:mga09592_782_c1 3300050508 Bacteria 24602
131 nmdc:mga06r32_233023_c1 3300050510 Bacteria 1829
132 nmdc:mga0n895_160545_c1 3300050512 Unclassified 2279
133 nmdc:mga0a205_31121_c1 3300050515 Bacteria 5110

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300009147 Ga0114129_10018114 Ga0114129_100181145 269
2 3300050507 nmdc:mga05p37_83472_c1 nmdc:mga05p37_83472_c1_2038_2901 269
3 3300042876 Ga0451577_0437160 Ga0451577_0437160_217_1140 282
4 3300044712 Ga0453684_0045522 Ga0453684_0045522_4863_5786 282
5 3300031824 Ga0307413_10063306 Ga0307413_100633062 284
6 3300031903 Ga0307407_10182736 Ga0307407_101827361 284
7 3300032126 Ga0307415_100069005 Ga0307415_1000690051 284
8 3300036712 Ga0316584_0029381 Ga0316584_0029381_1412_2278 284
9 3300039110 Ga0400487_58149 Ga0400487_58149_15_881 288
10 3300006871 Ga0075434_100397624 Ga0075434_1003976242 289
11 3300050515 nmdc:mga0a205_31121_c1 nmdc:mga0a205_31121_c1_584_1510 289
12 3300050507 nmdc:mga05p37_408668_c1 nmdc:mga05p37_408668_c1_130_1050 290
13 3300045051 Ga0451576_0001738 Ga0451576_0001738_30968_31861 293
14 3300031727 Ga0316576_10135893 Ga0316576_101358932 294
15 3300031733 Ga0316577_10069483 Ga0316577_100694832 294
16 3300035398 Ga0316574_0191610 Ga0316574_0191610_60_995 294
17 3300042876 Ga0451577_0206797 Ga0451577_0206797_523_1443 295
18 3300044712 Ga0453684_0009836 Ga0453684_0009836_9043_9963 295
19 3300006847 Ga0075431_100152496 Ga0075431_1001524961 296
20 3300035118 Ga0373954_0000894 Ga0373954_0000894_6137_7069 296
21 3300035119 Ga0373956_0000091 Ga0373956_0000091_15623_16555 296
22 3300035724 Ga0373933_0021052 Ga0373933_0021052_2561_3493 296
23 3300032126 Ga0307415_100424562 Ga0307415_1004245621 298
24 3300044712 Ga0453684_0009288 Ga0453684_0009288_8686_9603 299
25 3300035695 Ga0373927_0000011 Ga0373927_0000011_164325_165284 300
26 3300044712 Ga0453684_0018363 Ga0453684_0018363_1644_2546 300
27 2162886007 SwRhRL2b_contig_1188867 SwRhRL2b_0952.00006110 302
28 3300003203 JGI25406J46586_10003503 JGI25406J46586_100035037 302
29 3300005289 Ga0065704_10070649 Ga0065704_1007064911 302
30 3300005295 Ga0065707_10092957 Ga0065707_100929574 302
31 3300005471 Ga0070698_100180316 Ga0070698_1001803161 302
32 3300005518 Ga0070699_100005892 Ga0070699_1000058922 302
33 3300005549 Ga0070704_100235928 Ga0070704_1002359282 302
34 3300005617 Ga0068859_100080178 Ga0068859_1000801782 302
35 3300005844 Ga0068862_100020737 Ga0068862_1000207375 302
36 3300005844 Ga0068862_100173936 Ga0068862_1001739362 302
37 3300005985 Ga0081539_10005172 Ga0081539_100051728 302
38 3300006844 Ga0075428_100007710 Ga0075428_1000077104 302
39 3300006847 Ga0075431_100255592 Ga0075431_1002555922 302
40 3300006852 Ga0075433_10109412 Ga0075433_101094123 302
41 3300006880 Ga0075429_100001377 Ga0075429_10000137712 302
42 3300006880 Ga0075429_100018785 Ga0075429_1000187854 302
43 3300006880 Ga0075429_100079150 Ga0075429_1000791503 302
44 3300006931 Ga0097620_100080176 Ga0097620_1000801762 302
45 3300009147 Ga0114129_10004494 Ga0114129_100044947 302
46 3300009147 Ga0114129_10013356 Ga0114129_100133563 302
47 3300009147 Ga0114129_10090444 Ga0114129_100904443 302
48 3300009147 Ga0114129_10092357 Ga0114129_100923572 302
49 3300009147 Ga0114129_10104166 Ga0114129_101041662 302
50 3300009147 Ga0114129_10155337 Ga0114129_101553372 302
51 3300009553 Ga0105249_10007991 Ga0105249_100079915 302
52 3300011119 Ga0105246_10040922 Ga0105246_100409222 302
53 3300025922 Ga0207646_10160274 Ga0207646_101602742 302
54 3300025961 Ga0207712_10216745 Ga0207712_102167452 302
55 3300026118 Ga0207675_100524168 Ga0207675_1005241681 302
56 3300028380 Ga0268265_10075078 Ga0268265_100750783 302
57 3300028380 Ga0268265_10170420 Ga0268265_101704202 302
58 3300028381 Ga0268264_10460356 Ga0268264_104603561 302
59 3300039062 Ga0400483_008053 Ga0400483_008053_132_1046 302
60 3300039093 Ga0400489_03426 Ga0400489_03426_121_1053 302
61 3300042876 Ga0451577_0159819 Ga0451577_0159819_566_1474 302
62 3300045051 Ga0451576_0435608 Ga0451576_0435608_235_1143 302
63 3300050507 nmdc:mga05p37_139994_c1 nmdc:mga05p37_139994_c1_603_1511 302
64 3300050507 nmdc:mga05p37_17797_c1 nmdc:mga05p37_17797_c1_868_1776 302
65 3300050507 nmdc:mga05p37_35454_c1 nmdc:mga05p37_35454_c1_541_1449 302
66 3300050507 nmdc:mga05p37_7415_c1 nmdc:mga05p37_7415_c1_6291_7199 302
67 3300050507 nmdc:mga05p37_887_c1 nmdc:mga05p37_887_c1_30267_31175 302
68 3300050508 nmdc:mga09592_278827_c1 nmdc:mga09592_278827_c1_174_1082 302
69 3300050508 nmdc:mga09592_782_c1 nmdc:mga09592_782_c1_17631_18539 302
70 3300050510 nmdc:mga06r32_233023_c1 nmdc:mga06r32_233023_c1_245_1153 302
71 3300050512 nmdc:mga0n895_160545_c1 nmdc:mga0n895_160545_c1_1042_1950 302
72 3300005295 Ga0065707_10083308 Ga0065707_1008330810 303
73 3300009553 Ga0105249_10002276 Ga0105249_100022764 303
74 3300025961 Ga0207712_10072315 Ga0207712_100723152 303
75 3300031731 Ga0307405_10036440 Ga0307405_100364402 303
76 3300031852 Ga0307410_10007493 Ga0307410_100074936 303
77 3300031903 Ga0307407_10096689 Ga0307407_100966892 303
78 3300031911 Ga0307412_10179163 Ga0307412_101791632 303
79 3300031995 Ga0307409_100081910 Ga0307409_1000819102 303
80 3300039093 Ga0400489_61067 Ga0400489_61067_818_1753 303
81 2162886006 SwRhRL3b_contig_3064105 SwRhRL3b_0203.00001950 304
82 3300005289 Ga0065704_10000469 Ga0065704_100004693 304
83 3300005289 Ga0065704_10110674 Ga0065704_101106741 304
84 3300005295 Ga0065707_10000455 Ga0065707_1000045547 304
85 3300005295 Ga0065707_10012419 Ga0065707_100124192 304
86 3300005295 Ga0065707_10084300 Ga0065707_100843004 304
87 3300005295 Ga0065707_10084761 Ga0065707_100847617 304
88 3300005618 Ga0068864_100212265 Ga0068864_1002122652 304
89 3300005844 Ga0068862_100291941 Ga0068862_1002919412 304
90 3300006844 Ga0075428_100060984 Ga0075428_1000609842 304
91 3300006880 Ga0075429_100002682 Ga0075429_1000026825 304
92 3300006880 Ga0075429_100171205 Ga0075429_1001712053 304
93 3300009147 Ga0114129_10000846 Ga0114129_1000084614 304
94 3300009147 Ga0114129_10180476 Ga0114129_101804762 304
95 3300009147 Ga0114129_10190158 Ga0114129_101901582 304
96 3300009147 Ga0114129_10201909 Ga0114129_102019093 304
97 3300026075 Ga0207708_10185736 Ga0207708_101857362 304
98 3300026075 Ga0207708_10201899 Ga0207708_102018992 304
99 3300026095 Ga0207676_10186382 Ga0207676_101863822 304
100 3300026116 Ga0207674_10378546 Ga0207674_103785462 304
101 3300028380 Ga0268265_10249556 Ga0268265_102495562 304
102 3300032168 Ga0316593_10003202 Ga0316593_100032022 304
103 3300035398 Ga0316574_0030393 Ga0316574_0030393_1967_2905 304
104 3300036647 Ga0316582_0099819 Ga0316582_0099819_502_1440 304
105 3300036647 Ga0316582_0115314 Ga0316582_0115314_293_1240 304
106 3300036712 Ga0316584_0103996 Ga0316584_0103996_719_1657 304
107 3300038725 Ga0400484_25454 Ga0400484_25454_571_1491 304
108 3300042876 Ga0451577_0142599 Ga0451577_0142599_125_1039 304
109 3300044673 Ga0453683_0000129 Ga0453683_0000129_9675_10595 304
110 3300044673 Ga0453683_0015697 Ga0453683_0015697_774_1721 304
111 3300044673 Ga0453683_0123226 Ga0453683_0123226_143_1066 304
112 3300044673 Ga0453683_0126549 Ga0453683_0126549_163_1086 304
113 3300044673 Ga0453683_0210722 Ga0453683_0210722_48_968 304
114 3300044712 Ga0453684_0001791 Ga0453684_0001791_24104_25021 304
115 3300044712 Ga0453684_0002366 Ga0453684_0002366_30497_31417 304
116 3300044712 Ga0453684_0008583 Ga0453684_0008583_11009_11935 304
117 3300044712 Ga0453684_0051884 Ga0453684_0051884_4078_4998 304
118 3300044712 Ga0453684_0136790 Ga0453684_0136790_1402_2322 304
119 3300044712 Ga0453684_0139113 Ga0453684_0139113_1688_2608 304
120 3300044712 Ga0453684_0318742 Ga0453684_0318742_582_1496 304
121 3300044712 Ga0453684_0378154 Ga0453684_0378154_16_948 304
122 3300044712 Ga0453684_0450521 Ga0453684_0450521_95_1015 304
123 3300045051 Ga0451576_0000240 Ga0451576_0000240_69135_70082 304
124 3300045051 Ga0451576_0001491 Ga0451576_0001491_16013_16933 304
125 3300045051 Ga0451576_0016901 Ga0451576_0016901_3771_4694 304
126 3300045051 Ga0451576_0221352 Ga0451576_0221352_937_1851 304
127 3300049591 Ga0501075_0247183 Ga0501075_0247183_300_1226 304
128 3300049592 Ga0501076_0202041 Ga0501076_0202041_465_1391 304
129 3300049741 Ga0501079_0250004 Ga0501079_0250004_334_1260 304
130 3300050507 nmdc:mga05p37_145384_c1 nmdc:mga05p37_145384_c1_1179_2102 304
131 3300050507 nmdc:mga05p37_21394_c1 nmdc:mga05p37_21394_c1_5403_6326 304
132 3300050507 nmdc:mga05p37_217_c1 nmdc:mga05p37_217_c1_12186_13112 304
133 3300050508 nmdc:mga09592_24066_c1 nmdc:mga09592_24066_c1_718_1644 304

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01379

Porphobil_deam

Porphobilinogen deaminase, dipyromethane cofactor binding domain

44

252

0.98

PF03900

Porphobil_deamC

Porphobilinogen deaminase, C-terminal domain

263

332

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4mlq-assembly1.cif.gz_A crystal structure of bacillus megaterium porphobilinogen deaminase 0.9648 2 303
5h6o-assembly1.cif.gz_A porphobilinogen deaminase from vibrio cholerae 0.9626 1 298
5h6o-assembly1.cif.gz_A porphobilinogen deaminase from vibrio cholerae 0.9593 1 298
2ypn-assembly1.cif.gz_A hydroxymethylbilane synthase 0.9573 2 303
5ov5-assembly1.cif.gz_A bacillus megaterium porphobilinogen deaminase d82e mutant 0.9508 2 303
ID Description Score Start End Superfamily
af_Q9LK73_1_246_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.959 2 35 3.40.50.2000
af_O94048_239_331_3.30.160.40 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Porphobilinogen deaminase, C-terminal domain 0.9571 223 299 3.30.160.40
1ah5A02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9553 97 196 3.40.190.10
af_O34090_221_303_3.30.160.40 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Porphobilinogen deaminase, C-terminal domain 0.9552 220 299 3.30.160.40
1ah5A02 Alpha Beta;3-Layer(aba) Sandwich;D-Maltodextrin-Binding Protein; domain 2;Periplasmic binding protein-like II 0.9461 97 196 3.40.190.10
ID Description Score Start End GO Terms
AF-A0A661PAY0-F1-model_v4 Hydroxymethylbilane synthase (EC 2.5.1.61) 0.9818 81 303 GO:0004418
GO:0005737
GO:0006782
AF-W1UVL9-F1-model_v4 deleted 0.9767 54 298
AF-A0A351FP63-F1-model_v4 Hydroxymethylbilane synthase (EC 2.5.1.61) 0.9767 79 300 GO:0004418
GO:0005737
GO:0006783
AF-A0A0F9B6Q1-F1-model_v4 hydroxymethylbilane synthase (EC 2.5.1.61) 0.9765 117 304 GO:0004418
GO:0005737
GO:0006783
AF-A0A3M1RID1-F1-model_v4 Hydroxymethylbilane synthase (EC 2.5.1.61) 0.9762 78 303 GO:0004418
GO:0005737
GO:0006783

Feature Viewer

pLDDT pTM Quality
90.78 0.89 High
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Predicted Structure (AlphaFold2)

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