F142937
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 129 | 113 | 258 | 287 |
Family's Representative Sequence
| Representative Sequence | 3300046506|Ga0495583_0001224|Ga0495583_0001224_19107_20054 |
| Length | 315 |
| Sequence | LRYVSKLIQICINTVIYYKNKGYGLMDLTENVRVLVLGASGMLGNAVLRFFSESSGFDVKGSVRSASALAFLPRALHEHIVCGVDVENTDSLAALFSQVRPSIVINCIGLVKQLAQANDPLSAIPINSLLPHRLARLCDLTQARLIHISTDCVFSGTNGGYREHDLPDAQDLYGRSKYLGEVNYPNAITLRTSIIGHELRSSHALIDWFLSQQDKVRGYTRAIFSGLPTVELAEIIRDKVIPNSALHGLYHVSSAPINKHDLLKLVAEIYGKSIQVVPDDSLVIDRSLDSSRFAEVCGYHAPCWPELVQKMRNFA |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300046506 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere | Metagenome | Rhizosphere |
| 2 | 2162886007 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 | Metagenome | Rhizosphere |
| 3 | 3300002737 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA | Metagenome | Endosphere |
| 4 | 3300003214 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL | Metagenome | Endosphere |
| 5 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 6 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 7 | 3300004625 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 | Metagenome | Endosphere |
| 8 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 9 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 10 | 3300005333 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 15 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 17 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 18 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 19 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 20 | 3300006177 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 | Metagenome | Endosphere |
| 21 | 3300006178 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 | Metagenome | Endosphere |
| 22 | 3300006195 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Metagenome | Endosphere |
| 23 | 3300006353 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 | Metagenome | Endosphere |
| 24 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 25 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 26 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 27 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 28 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 29 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 30 | 3300013250 | Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 | Metagenome | Rhizosphere |
| 31 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 32 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 33 | 3300022467 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) | Metatranscriptome | Rhizosphere |
| 34 | 3300025228 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 35 | 3300025893 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 36 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 42 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 43 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Metagenome | Rhizosphere |
| 47 | 3300028653 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG | Metagenome | Rhizosphere |
| 48 | 3300031090 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 49 | 3300031238 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG | Metagenome | Rhizosphere |
| 50 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 51 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 52 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 53 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 54 | 3300031456 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM | Metagenome | Unclassified |
| 55 | 3300031507 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM | Metagenome | Unclassified |
| 56 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 57 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 58 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 59 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 60 | 3300037466 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 | Metagenome | Rhizosphere |
| 61 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 62 | 3300038726 | Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 | Metagenome | Unclassified |
| 63 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 64 | 3300042012 | Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 | Metagenome | Rhizosphere |
| 65 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 66 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 67 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 68 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 69 | 3300046460 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere | Metagenome | Rhizosphere |
| 70 | 3300046472 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere | Metagenome | Rhizosphere |
| 71 | 3300046474 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere | Metagenome | Rhizosphere |
| 72 | 3300046519 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere | Metagenome | Rhizosphere |
| 73 | 3300046526 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere | Metagenome | Rhizosphere |
| 74 | 3300046531 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere | Metagenome | Rhizosphere |
| 75 | 3300046535 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere | Metagenome | Rhizosphere |
| 76 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 77 | 3300046691 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere | Metagenome | Rhizosphere |
| 78 | 3300047318 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere | Metagenome | Rhizosphere |
| 79 | 3300047470 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere | Metagenome | Rhizosphere |
| 80 | 3300048091 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere | Metagenome | Rhizosphere |
| 81 | 3300048905 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 | Metagenome | Rhizoplane |
| 82 | 3300048907 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 | Metagenome | Rhizoplane |
| 83 | 3300048908 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 | Metagenome | Rhizoplane |
| 84 | 3300048911 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled | Metagenome | Rhizoplane |
| 85 | 3300048913 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 | Metagenome | Rhizoplane |
| 86 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 87 | 3300048920 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 | Metagenome | Unclassified |
| 88 | 3300048921 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 | Metagenome | Unclassified |
| 89 | 3300048925 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled | Metagenome | Unclassified |
| 90 | 3300048927 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 | Metagenome | Unclassified |
| 91 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 92 | 3300049459 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere | Metagenome | Rhizosphere |
| 93 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 94 | 3300049574 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 95 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 96 | 3300049778 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_A_5_control | Metagenome | Rhizosphere |
| 97 | 3300050489 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation | Metagenome | Endosphere |
| 98 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 99 | 3300050496 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation | Metagenome | Endosphere |
| 100 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 101 | 3300053093 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere | Metagenome | Endosphere |
| 102 | 3300053129 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere | Metagenome | Endosphere |
| 103 | 2511231002 | Polaromonas sp. CF318 | Isolate | Rhizosphere |
| 104 | 2582581299 | Rhizobium leguminosarum OV483 | Isolate | Rhizosphere |
| 105 | 2643221639 | Pelomonas sp. Root1217 | Isolate | Unclassified |
| 106 | 2643221674 | Devosia sp. Root436 | Isolate | Unclassified |
| 107 | 2841760612 | Bosea sp. Tri-49 | Isolate | Nodule |
| 108 | 2844104063 | Bosea sp. Tri-39 | Isolate | Nodule |
| 109 | 2851182111 | Bosea sp. Tri-44 | Isolate | Nodule |
| 110 | 2851246043 | Bosea sp. Tri-54 | Isolate | Nodule |
| 111 | 2889306138 | Methylobacterium sp. PvR107 | Isolate | Rhizosphere |
| 112 | 2917699015 | Bosea sp. F3-2 | Isolate | Rhizosphere |
| 113 | 8054795415 | Paenibacillus periandrae PM10 | Isolate | Nodule |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 89.92 |
| Metatranscriptomes | 1.55 |
| Isolates | 8.53 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 14.73 |
| Nodule | 3.88 |
| Rhizoplane | 4.65 |
| Rhizosphere | 66.67 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 5.43 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0495583_0001224 | 3300046506 | Bacteria | 27316 |
| 2 | SwRhRL2b_contig_2841747 | 2162886007 | Bacteria | 7899 |
| 3 | JGI25162J39368_1000207 | 3300002737 | Bacteria | 62123 |
| 4 | JGI25165J46597_1000708 | 3300003214 | Bacteria | 26335 |
| 5 | rootH2_10153235 | 3300003320 | Bacteria | 1340 |
| 6 | rootH1_10191024 | 3300003323 | Bacteria | 2141 |
| 7 | Ga0055543_1001225 | 3300004625 | Bacteria | 10751 |
| 8 | Ga0065165_1000016 | 3300005262 | Bacteria | 286248 |
| 9 | Ga0065165_1000295 | 3300005262 | Bacteria | 84323 |
| 10 | Ga0065704_10070295 | 3300005289 | Bacteria | 37925 |
| 11 | Ga0070677_10000042 | 3300005333 | Bacteria | 39651 |
| 12 | Ga0070661_100021764 | 3300005344 | Bacteria | 4585 |
| 13 | Ga0070659_100000260 | 3300005366 | Bacteria | 41588 |
| 14 | Ga0070708_100474544 | 3300005445 | Bacteria | 1180 |
| 15 | Ga0068855_100051034 | 3300005563 | Bacteria | 4873 |
| 16 | Ga0070664_100009238 | 3300005564 | Bacteria | 8004 |
| 17 | Ga0068857_100059293 | 3300005577 | Bacteria | 3400 |
| 18 | Ga0068856_100005136 | 3300005614 | Bacteria | 12923 |
| 19 | Ga0068856_100101131 | 3300005614 | Bacteria | 2875 |
| 20 | Ga0068852_100029354 | 3300005616 | Bacteria | 4518 |
| 21 | Ga0068859_100260954 | 3300005617 | Bacteria | 1824 |
| 22 | Ga0075362_10018958 | 3300006177 | Bacteria | 2855 |
| 23 | Ga0075367_10050907 | 3300006178 | Bacteria | 2447 |
| 24 | Ga0075366_10014745 | 3300006195 | Bacteria | 4469 |
| 25 | Ga0075366_10027621 | 3300006195 | Bacteria | 3330 |
| 26 | Ga0075366_10064057 | 3300006195 | Bacteria | 2186 |
| 27 | Ga0075370_10038774 | 3300006353 | Bacteria | 2682 |
| 28 | Ga0075370_10177278 | 3300006353 | Bacteria | 1254 |
| 29 | Ga0075431_100001319 | 3300006847 | Bacteria | 22677 |
| 30 | Ga0097620_100260965 | 3300006931 | Bacteria | 1824 |
| 31 | Ga0105240_10312348 | 3300009093 | Bacteria | 1794 |
| 32 | Ga0105237_10320681 | 3300009545 | Bacteria | 1553 |
| 33 | Ga0105238_10198506 | 3300009551 | Bacteria | 1981 |
| 34 | Ga0105239_10183171 | 3300010375 | Bacteria | 2343 |
| 35 | Ga0171462_1007 | 3300013250 | Bacteria | 417698 |
| 36 | Ga0157372_10245488 | 3300013307 | Bacteria | 2078 |
| 37 | Ga0157375_10352528 | 3300013308 | Bacteria | 1637 |
| 38 | Ga0224712_10000040 | 3300022467 | Bacteria | 19652 |
| 39 | Ga0209672_102260 | 3300025228 | Bacteria | 4958 |
| 40 | Ga0207682_10000887 | 3300025893 | Bacteria | 13851 |
| 41 | Ga0207695_10220252 | 3300025913 | Bacteria | 1805 |
| 42 | Ga0207671_10001319 | 3300025914 | Bacteria | 29037 |
| 43 | Ga0207671_10201769 | 3300025914 | Bacteria | 1553 |
| 44 | Ga0207649_10000519 | 3300025920 | Bacteria | 27003 |
| 45 | Ga0207694_10072592 | 3300025924 | Bacteria | 2691 |
| 46 | Ga0207690_10004748 | 3300025932 | Bacteria | 8023 |
| 47 | Ga0207679_10000047 | 3300025945 | Bacteria | 119891 |
| 48 | Ga0207648_10103743 | 3300026089 | Bacteria | 2493 |
| 49 | Ga0207674_10093030 | 3300026116 | Bacteria | 3004 |
| 50 | Ga0207675_100347356 | 3300026118 | Bacteria | 1453 |
| 51 | Ga0207698_10021963 | 3300026142 | Bacteria | 4424 |
| 52 | Ga0265318_10083946 | 3300028577 | Unclassified | 1175 |
| 53 | Ga0265323_10052726 | 3300028653 | Bacteria | 1438 |
| 54 | Ga0265323_10067171 | 3300028653 | Bacteria | 1233 |
| 55 | Ga0265760_10003363 | 3300031090 | Bacteria | 4665 |
| 56 | Ga0265332_10006916 | 3300031238 | Bacteria | 5142 |
| 57 | Ga0265339_10004497 | 3300031249 | Bacteria | 9502 |
| 58 | Ga0265331_10002354 | 3300031250 | Bacteria | 12843 |
| 59 | Ga0265327_10000396 | 3300031251 | Bacteria | 81811 |
| 60 | Ga0265316_10005271 | 3300031344 | Bacteria | 12615 |
| 61 | Ga0307513_10000038 | 3300031456 | Bacteria | 174780 |
| 62 | Ga0307509_10011494 | 3300031507 | Bacteria | 10708 |
| 63 | Ga0265342_10000052 | 3300031712 | Bacteria | 123865 |
| 64 | Ga0307414_10267315 | 3300032004 | Bacteria | 1430 |
| 65 | Ga0395899_0165492 | 3300037312 | Bacteria | 1560 |
| 66 | Ga0395900_0022910 | 3300037418 | Bacteria | 6391 |
| 67 | Ga0395898_0002528 | 3300037466 | Bacteria | 21474 |
| 68 | Ga0395901_0001985 | 3300038443 | Bacteria | 21042 |
| 69 | Ga0395901_0256135 | 3300038443 | Bacteria | 1822 |
| 70 | Ga0400490_18648 | 3300038726 | Bacteria | 5755 |
| 71 | Ga0436361_0721943 | 3300039447 | Bacteria | 1519 |
| 72 | Ga0439455_0021388 | 3300042012 | Bacteria | 1542 |
| 73 | Ga0451577_0019219 | 3300042876 | Bacteria | 6284 |
| 74 | Ga0451577_0092742 | 3300042876 | Unclassified | 2696 |
| 75 | Ga0453683_0000134 | 3300044673 | Bacteria | 108503 |
| 76 | Ga0453684_0000043 | 3300044712 | Archaea | 642274 |
| 77 | Ga0453684_0000614 | 3300044712 | Bacteria | 130471 |
| 78 | Ga0453684_0003733 | 3300044712 | Bacteria | 33722 |
| 79 | Ga0453684_0077099 | 3300044712 | Bacteria | 4181 |
| 80 | Ga0453684_0291748 | 3300044712 | Bacteria | 1857 |
| 81 | Ga0453684_0439248 | 3300044712 | Bacteria | 1454 |
| 82 | Ga0451576_0000392 | 3300045051 | Bacteria | 101819 |
| 83 | Ga0495638_0017531 | 3300046460 | Bacteria | 4771 |
| 84 | Ga0495580_0380227 | 3300046472 | Unclassified | 954 |
| 85 | Ga0495605_0003280 | 3300046474 | Bacteria | 9701 |
| 86 | Ga0495632_0001139 | 3300046519 | Bacteria | 22724 |
| 87 | Ga0495666_0087800 | 3300046526 | Bacteria | 1469 |
| 88 | Ga0495665_0024749 | 3300046531 | Bacteria | 3225 |
| 89 | Ga0495586_0139255 | 3300046535 | Bacteria | 1361 |
| 90 | Ga0495668_0080376 | 3300046616 | Bacteria | 1789 |
| 91 | Ga0495670_0000221 | 3300046691 | Bacteria | 25910 |
| 92 | Ga0495636_0009560 | 3300047318 | Bacteria | 3819 |
| 93 | Ga0495681_0000247 | 3300047470 | Bacteria | 44236 |
| 94 | Ga0495626_0019069 | 3300048091 | Bacteria | 3433 |
| 95 | Ga0496102_0798010 | 3300048905 | Unclassified | 866 |
| 96 | Ga0496104_0043280 | 3300048907 | Plasmid | 4230 |
| 97 | Ga0496105_0061923 | 3300048908 | Plasmid | 3088 |
| 98 | Ga0496108_0417706 | 3300048911 | Bacteria | 1171 |
| 99 | Ga0496110_0621122 | 3300048913 | Unclassified | 979 |
| 100 | Ga0496112_0015359 | 3300048915 | Bacteria | 7142 |
| 101 | Ga0496117_0000038 | 3300048920 | Bacteria | 322781 |
| 102 | Ga0496117_0062548 | 3300048920 | Bacteria | 2550 |
| 103 | Ga0496118_0000019 | 3300048921 | Bacteria | 489649 |
| 104 | Ga0496122_0207617 | 3300048925 | Bacteria | 1138 |
| 105 | Ga0496124_0064453 | 3300048927 | Unclassified | 3058 |
| 106 | Ga0496126_0001190 | 3300048929 | Bacteria | 42445 |
| 107 | Ga0495678_000577 | 3300049459 | Bacteria | 34773 |
| 108 | Ga0501034_0121001 | 3300049571 | Bacteria | 2604 |
| 109 | Ga0501038_0053541 | 3300049574 | Bacteria | 3474 |
| 110 | Ga0501047_0085037 | 3300049581 | Unclassified | 3040 |
| 111 | Ga0501282_000005 | 3300049778 | Bacteria | 42046 |
| 112 | nmdc:mga03683_49759_c1 | 3300050489 | Bacteria | 1746 |
| 113 | nmdc:mga0k408_195683_c1 | 3300050493 | Bacteria | 1207 |
| 114 | nmdc:mga0k408_73000_c1 | 3300050493 | Bacteria | 2004 |
| 115 | nmdc:mga07m45_135402_c1 | 3300050496 | Bacteria | 1426 |
| 116 | nmdc:mga06r32_781_c1 | 3300050510 | Bacteria | 26964 |
| 117 | Ga0500651_0002049 | 3300053093 | Bacteria | 10462 |
| 118 | Ga0500628_001851 | 3300053129 | Bacteria | 3573 |
| 119 | 2511246720 | 2511231002 | Bacteria | 5042903 |
| 120 | 2585233362 | 2582581299 | Bacteria | 6518058 |
| 121 | 2644222879 | 2643221639 | Bacteria | 6649903 |
| 122 | 2644413008 | 2643221674 | Bacteria | 3919126 |
| 123 | 2841765759 | 2841760612 | Bacteria | 6454112 |
| 124 | 2844107369 | 2844104063 | Bacteria | 6440972 |
| 125 | 2851187801 | 2851182111 | Bacteria | 6047226 |
| 126 | 2851249409 | 2851246043 | Bacteria | 6439203 |
| 127 | 2889306592 | 2889306138 | Bacteria | 6358934 |
| 128 | 2917702346 | 2917699015 | Bacteria | 7043791 |
| 129 | 8054802161 | 8054795415 | Bacteria | 9785225 |
| 130 | Ga0495583_0001224 | |||
| 131 | SwRhRL2b_contig_2841747 | |||
| 132 | JGI25162J39368_1000207 | |||
| 133 | JGI25165J46597_1000708 | |||
| 134 | rootH2_10153235 | |||
| 135 | rootH1_10191024 | |||
| 136 | Ga0055543_1001225 | |||
| 137 | Ga0065165_1000016 | |||
| 138 | Ga0065165_1000295 | |||
| 139 | Ga0065704_10070295 | |||
| 140 | Ga0070677_10000042 | |||
| 141 | Ga0070661_100021764 | |||
| 142 | Ga0070659_100000260 | |||
| 143 | Ga0070708_100474544 | |||
| 144 | Ga0068855_100051034 | |||
| 145 | Ga0070664_100009238 | |||
| 146 | Ga0068857_100059293 | |||
| 147 | Ga0068856_100005136 | |||
| 148 | Ga0068856_100101131 | |||
| 149 | Ga0068852_100029354 | |||
| 150 | Ga0068859_100260954 | |||
| 151 | Ga0075362_10018958 | |||
| 152 | Ga0075367_10050907 | |||
| 153 | Ga0075366_10014745 | |||
| 154 | Ga0075366_10027621 | |||
| 155 | Ga0075366_10064057 | |||
| 156 | Ga0075370_10038774 | |||
| 157 | Ga0075370_10177278 | |||
| 158 | Ga0075431_100001319 | |||
| 159 | Ga0097620_100260965 | |||
| 160 | Ga0105240_10312348 | |||
| 161 | Ga0105237_10320681 | |||
| 162 | Ga0105238_10198506 | |||
| 163 | Ga0105239_10183171 | |||
| 164 | Ga0171462_1007 | |||
| 165 | Ga0157372_10245488 | |||
| 166 | Ga0157375_10352528 | |||
| 167 | Ga0224712_10000040 | |||
| 168 | Ga0209672_102260 | |||
| 169 | Ga0207682_10000887 | |||
| 170 | Ga0207695_10220252 | |||
| 171 | Ga0207671_10001319 | |||
| 172 | Ga0207671_10201769 | |||
| 173 | Ga0207649_10000519 | |||
| 174 | Ga0207694_10072592 | |||
| 175 | Ga0207690_10004748 | |||
| 176 | Ga0207679_10000047 | |||
| 177 | Ga0207648_10103743 | |||
| 178 | Ga0207674_10093030 | |||
| 179 | Ga0207675_100347356 | |||
| 180 | Ga0207698_10021963 | |||
| 181 | Ga0265318_10083946 | |||
| 182 | Ga0265323_10052726 | |||
| 183 | Ga0265323_10067171 | |||
| 184 | Ga0265760_10003363 | |||
| 185 | Ga0265332_10006916 | |||
| 186 | Ga0265339_10004497 | |||
| 187 | Ga0265331_10002354 | |||
| 188 | Ga0265327_10000396 | |||
| 189 | Ga0265316_10005271 | |||
| 190 | Ga0307513_10000038 | |||
| 191 | Ga0307509_10011494 | |||
| 192 | Ga0265342_10000052 | |||
| 193 | Ga0307414_10267315 | |||
| 194 | Ga0395899_0165492 | |||
| 195 | Ga0395900_0022910 | |||
| 196 | Ga0395898_0002528 | |||
| 197 | Ga0395901_0001985 | |||
| 198 | Ga0395901_0256135 | |||
| 199 | Ga0400490_18648 | |||
| 200 | Ga0436361_0721943 | |||
| 201 | Ga0439455_0021388 | |||
| 202 | Ga0451577_0019219 | |||
| 203 | Ga0451577_0092742 | |||
| 204 | Ga0453683_0000134 | |||
| 205 | Ga0453684_0000043 | |||
| 206 | Ga0453684_0000614 | |||
| 207 | Ga0453684_0003733 | |||
| 208 | Ga0453684_0077099 | |||
| 209 | Ga0453684_0291748 | |||
| 210 | Ga0453684_0439248 | |||
| 211 | Ga0451576_0000392 | |||
| 212 | Ga0495638_0017531 | |||
| 213 | Ga0495580_0380227 | |||
| 214 | Ga0495605_0003280 | |||
| 215 | Ga0495632_0001139 | |||
| 216 | Ga0495666_0087800 | |||
| 217 | Ga0495665_0024749 | |||
| 218 | Ga0495586_0139255 | |||
| 219 | Ga0495668_0080376 | |||
| 220 | Ga0495670_0000221 | |||
| 221 | Ga0495636_0009560 | |||
| 222 | Ga0495681_0000247 | |||
| 223 | Ga0495626_0019069 | |||
| 224 | Ga0496102_0798010 | |||
| 225 | Ga0496104_0043280 | |||
| 226 | Ga0496105_0061923 | |||
| 227 | Ga0496108_0417706 | |||
| 228 | Ga0496110_0621122 | |||
| 229 | Ga0496112_0015359 | |||
| 230 | Ga0496117_0000038 | |||
| 231 | Ga0496117_0062548 | |||
| 232 | Ga0496118_0000019 | |||
| 233 | Ga0496122_0207617 | |||
| 234 | Ga0496124_0064453 | |||
| 235 | Ga0496126_0001190 | |||
| 236 | Ga0495678_000577 | |||
| 237 | Ga0501034_0121001 | |||
| 238 | Ga0501038_0053541 | |||
| 239 | Ga0501047_0085037 | |||
| 240 | Ga0501282_000005 | |||
| 241 | nmdc:mga03683_49759_c1 | |||
| 242 | nmdc:mga0k408_195683_c1 | |||
| 243 | nmdc:mga0k408_73000_c1 | |||
| 244 | nmdc:mga07m45_135402_c1 | |||
| 245 | nmdc:mga06r32_781_c1 | |||
| 246 | Ga0500651_0002049 | |||
| 247 | Ga0500628_001851 | |||
| 248 | 2511246720 | |||
| 249 | 2585233362 | |||
| 250 | 2644222879 | |||
| 251 | 2644413008 | |||
| 252 | 2841765759 | |||
| 253 | 2844107369 | |||
| 254 | 2851187801 | |||
| 255 | 2851249409 | |||
| 256 | 2889306592 | |||
| 257 | 2917702346 | |||
| 258 | 8054802161 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 3sc6-assembly5.cif.gz_E | 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp | 0.8384 | 6 | 289 |
| 3sc6-assembly2.cif.gz_B | 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp | 0.8326 | 1 | 289 |
| 3sc6-assembly6.cif.gz_F | 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp | 0.8304 | 4 | 289 |
| 3sc6-assembly5.cif.gz_E | 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp | 0.8299 | 6 | 289 |
| 3sc6-assembly2.cif.gz_B | 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose reductase (rfbd) from bacillus anthracis str. ames in complex with nadp | 0.8298 | 1 | 289 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 3sxpA01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.8489 | 7 | 165 | 3.40.50.720 |
| 2ggsB01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.8359 | 7 | 274 | 3.40.50.720 |
| 3sc6D01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.8285 | 2 | 227 | 3.40.50.720 |
| 2ggsB01 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.8284 | 7 | 274 | 3.40.50.720 |
| af_Q8IZJ6_42_212_3.40.50.720 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.8268 | 3 | 154 | 3.40.50.720 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A5E4Y7T1-F1-model_v4 | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.9973 | 7 | 289 |
GO:0005829
GO:0008831 GO:0019305 GO:0045226 |
| AF-X1NGC5-F1-model_v4 | RmlD-like substrate binding domain-containing protein | 0.9953 | 98 | 287 |
GO:0005829
GO:0008831 GO:0019305 GO:0045226 |
| AF-A0A418Y4D4-F1-model_v4 | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.9944 | 98 | 289 |
GO:0005829
GO:0008831 GO:0019305 GO:0045226 |
| AF-A0A7V9PL58-F1-model_v4 | deleted | 0.9938 | 121 | 289 |
|
| AF-A0A4V1SSN3-F1-model_v4 | deleted | 0.9934 | 77 | 289 |
|