F133655

General Info

Members Datasets Scaffolds Average Seq Length
127 84 254 309

Family's Representative Sequence

Representative Sequence 3300005618|Ga0068864_100304350|Ga0068864_1003043501
Length 350
Sequence VAAAETGTCDELAAQIESFLERLRLERRAAQRTVETYGRDLWALHRQARQAGWPLDARALDLIALRRFLATFAGQNRPATIARKVAALRAFYRDLQRRGVIADNPAATLRLPKISRRLPKFLSLEAASELVETPDGHAPPEALAIRDRAMLELLYGSGIRVGELVGLDCDHVDTQERSARVLGKGGKERVVPFGEPCARALSSYLAVRHRLRPARGGLPDARALFLGRWGTRLTARQVQKLVHAYGALGTGRPDLHPHVLRHTCATHLLDAGADLRSIQELLGHASLSTTQRYTHVSVDRLVEVYERAHPLARQGVAVVGSASEQTVLQTRVQAGGAAKRPRRRGPIAGA

Samples

Sample ID Description Type Environment
1 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
2 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
5 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
6 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
7 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
8 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
9 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
10 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
11 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
12 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
13 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
14 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
15 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
16 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
17 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
18 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
19 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
20 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
21 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
22 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
23 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
24 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
25 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
26 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
27 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
28 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
29 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
30 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
31 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
32 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
33 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
34 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
35 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
36 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
37 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
38 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
39 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
40 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
41 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
42 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
43 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
44 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
45 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
46 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
47 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
48 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
49 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
50 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
51 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
52 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
53 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
54 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
55 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
56 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
57 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
58 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
59 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
60 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
61 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
62 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
63 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
64 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
65 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
66 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
67 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
68 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
69 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
70 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
71 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
72 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
73 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
74 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
75 2738543027 Promicromonospora sp. CF082 Isolate Unclassified
76 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
77 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
78 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
79 2808606394 Promicromonospora sp. C35 Isolate Unclassified
80 2808606700 Arthrobacter agilis UMCV2 Isolate Rhizosphere
81 2835188231 Isoptericola variabilis JZ7 Isolate Unclassified
82 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
83 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere
84 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.34
Metatranscriptomes 0
Isolates 8.66

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.15
Rhizosphere 77.95
Stem 0
Stem Tuber 0
Unclassified 5.51

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068864_100304350 3300005618 Bacteria 1493
2 rootH1_10154550 3300003323 Bacteria 2979
3 rootH1_10155657 3300003323 Bacteria 4753
4 Ga0070682_100216402 3300005337 Bacteria 1361
5 Ga0070696_100024935 3300005546 Bacteria 4064
6 Ga0070665_100091717 3300005548 Bacteria 3043
7 Ga0068855_100045915 3300005563 Bacteria 5164
8 Ga0068855_100114035 3300005563 Bacteria 3099
9 Ga0068854_100232346 3300005578 Bacteria 1464
10 Ga0081455_10023150 3300005937 Bacteria 5784
11 Ga0081539_10069480 3300005985 Bacteria 1895
12 Ga0075429_100053387 3300006880 Bacteria 3517
13 Ga0105240_10010350 3300009093 Bacteria 13121
14 Ga0105240_10462692 3300009093 Bacteria 1417
15 Ga0111539_10366650 3300009094 Bacteria 1677
16 Ga0207695_10047213 3300025913 Bacteria 4559
17 Ga0207667_10000738 3300025949 Bacteria 42549
18 Ga0207667_10054096 3300025949 Bacteria 4222
19 Ga0265337_1003001 3300028556 Bacteria 7476
20 Ga0265334_10000300 3300028573 Bacteria 27730
21 Ga0307517_10102742 3300028786 Bacteria 2239
22 Ga0307511_10019517 3300030521 Bacteria 6443
23 Ga0265320_10000076 3300031240 Bacteria 85991
24 Ga0265331_10035208 3300031250 Bacteria 2465
25 Ga0265327_10020480 3300031251 Bacteria 4027
26 Ga0265316_10160857 3300031344 Bacteria 1679
27 Ga0307508_10002000 3300031616 Bacteria 22241
28 Ga0316575_10001960 3300031665 Bacteria 6818
29 Ga0316575_10008302 3300031665 Bacteria 3777
30 Ga0265314_10138158 3300031711 Bacteria 1510
31 Ga0316576_10019823 3300031727 Unclassified 4614
32 Ga0316576_10103914 3300031727 Bacteria 2125
33 Ga0316576_10135957 3300031727 Bacteria 1850
34 Ga0316576_10179341 3300031727 Unclassified 1598
35 Ga0316578_10016408 3300031728 Bacteria 4008
36 Ga0307516_10009785 3300031730 Bacteria 10636
37 Ga0373955_0195615 3300035172 Bacteria 1203
38 Ga0316574_0033506 3300035398 Bacteria 3126
39 Ga0316574_0052522 3300035398 Bacteria 2542
40 Ga0316574_0064034 3300035398 Bacteria 2313
41 Ga0373927_0030774 3300035695 Bacteria 3501
42 Ga0373937_0040251 3300036401 Bacteria 4260
43 Ga0316582_0102742 3300036647 Bacteria 1895
44 Ga0316582_0359643 3300036647 Bacteria 1002
45 Ga0316584_0031184 3300036712 Bacteria 3942
46 Ga0316584_0053494 3300036712 Bacteria 3022
47 Ga0316584_0102424 3300036712 Bacteria 2144
48 Ga0316584_0169454 3300036712 Bacteria 1620
49 Ga0373925_0087140 3300037068 Bacteria 2383
50 Ga0373925_0177370 3300037068 Bacteria 1685
51 Ga0400484_26449 3300038725 Bacteria 1800
52 Ga0400490_34472 3300038726 Bacteria 6742
53 Ga0400488_59215 3300038741 Bacteria 10431
54 Ga0400483_041422 3300039062 Bacteria 4570
55 Ga0400483_255217 3300039062 Bacteria 1608
56 Ga0400489_16633 3300039093 Bacteria 4771
57 Ga0400489_55987 3300039093 Unclassified 1553
58 Ga0400489_81571 3300039093 Bacteria 15743
59 Ga0400489_92311 3300039093 Bacteria 1696
60 Ga0436365_0178884 3300039437 Bacteria 1817
61 Ga0436365_0363756 3300039437 Bacteria 980
62 Ga0451789_0748474 3300041443 Unclassified 1056
63 Ga0451791_0409425 3300041451 Unclassified 1050
64 Ga0451797_0439921 3300041453 Unclassified 2458
65 Ga0451807_0975804 3300041486 Bacteria 9240
66 Ga0451577_0000281 3300042876 Bacteria 98760
67 Ga0451577_0018819 3300042876 Bacteria 6355
68 Ga0451577_0021965 3300042876 Bacteria 5832
69 Ga0453683_0067239 3300044673 Bacteria 2240
70 Ga0453684_0004345 3300044712 Bacteria 30108
71 Ga0453684_0011823 3300044712 Bacteria 14547
72 Ga0453684_0013471 3300044712 Bacteria 13273
73 Ga0453684_0014583 3300044712 Bacteria 12548
74 Ga0453684_0038311 3300044712 Bacteria 6557
75 Ga0453684_0045605 3300044712 Bacteria 5844
76 Ga0453684_0116788 3300044712 Bacteria 3230
77 Ga0453684_0194546 3300044712 Bacteria 2369
78 Ga0453684_0260130 3300044712 Bacteria 1988
79 Ga0466960_0039791 3300044901 Bacteria 2219
80 Ga0451576_0000412 3300045051 Bacteria 99303
81 Ga0451576_0068603 3300045051 Bacteria 3690
82 Ga0495629_0242147 3300046459 Bacteria 1242
83 Ga0501034_0321345 3300049571 Bacteria 1481
84 Ga0501043_0037821 3300049579 Bacteria 3796
85 Ga0501047_0002349 3300049581 Bacteria 18098
86 Ga0501047_0038916 3300049581 Bacteria 4600
87 Ga0501067_0007963 3300049583 Bacteria 5886
88 Ga0501067_0048537 3300049583 Bacteria 2354
89 Ga0501068_0000490 3300049584 Bacteria 20051
90 Ga0501069_0040815 3300049585 Bacteria 2564
91 Ga0501070_0028005 3300049586 Bacteria 4726
92 Ga0501072_0000001 3300049588 Bacteria 362697
93 Ga0501073_0058569 3300049589 Bacteria 2692
94 Ga0501073_0085422 3300049589 Bacteria 2195
95 Ga0501074_0019281 3300049590 Bacteria 4955
96 Ga0501074_0024225 3300049590 Bacteria 4410
97 Ga0501079_0006980 3300049741 Bacteria 8511
98 Ga0501080_0008408 3300049742 Bacteria 9348
99 Ga0501080_0011853 3300049742 Bacteria 7986
100 Ga0501080_0159108 3300049742 Bacteria 2086
101 Ga0501080_0224953 3300049742 Bacteria 1716
102 Ga0501083_0000694 3300049744 Bacteria 21938
103 Ga0501083_0002125 3300049744 Bacteria 13592
104 Ga0501083_0006605 3300049744 Bacteria 8231
105 Ga0501035_0156743 3300049822 Bacteria 1973
106 Ga0501044_0249236 3300049823 Bacteria 1717
107 nmdc:mga09592_100712_c1 3300050508 Bacteria 2474
108 nmdc:mga08y16_272618_c1 3300050511 Unclassified 1746
109 nmdc:mga0a205_469802_c1 3300050515 Bacteria 1117
110 Ga0501084_0000079 3300054114 Bacteria 71210
111 Ga0501084_0000613 3300054114 Bacteria 27148
112 Ga0501082_0001707 3300060353 Bacteria 19386
113 Ga0501082_0032192 3300060353 Bacteria 4522
114 Ga0501082_0477973 3300060353 Bacteria 1089
115 Ga0466962_0044460 3300061719 Bacteria 2125
116 Ga0530510_0035312 3300061734 Bacteria 3603
117 2738692486 2738541272 Bacteria 6848551
118 2739323576 2738543027 Bacteria 6409078
119 2739608949 2739367654 Bacteria 6049412
120 2760303601 2758568522 Bacteria 5953541
121 2760622541 2758568621 Bacteria 5967089
122 2809027286 2808606394 Bacteria 6248540
123 2810365788 2808606700 Bacteria 3482157
124 2835190467 2835188231 Bacteria 3476928
125 2905927292 2905926851 Bacteria 4423176
126 2946004993 2946003308 Bacteria 3857229
127 8056584028 8056579771 Bacteria 5840325
128 Ga0068864_100304350
129 rootH1_10154550
130 rootH1_10155657
131 Ga0070682_100216402
132 Ga0070696_100024935
133 Ga0070665_100091717
134 Ga0068855_100045915
135 Ga0068855_100114035
136 Ga0068854_100232346
137 Ga0081455_10023150
138 Ga0081539_10069480
139 Ga0075429_100053387
140 Ga0105240_10010350
141 Ga0105240_10462692
142 Ga0111539_10366650
143 Ga0207695_10047213
144 Ga0207667_10000738
145 Ga0207667_10054096
146 Ga0265337_1003001
147 Ga0265334_10000300
148 Ga0307517_10102742
149 Ga0307511_10019517
150 Ga0265320_10000076
151 Ga0265331_10035208
152 Ga0265327_10020480
153 Ga0265316_10160857
154 Ga0307508_10002000
155 Ga0316575_10001960
156 Ga0316575_10008302
157 Ga0265314_10138158
158 Ga0316576_10019823
159 Ga0316576_10103914
160 Ga0316576_10135957
161 Ga0316576_10179341
162 Ga0316578_10016408
163 Ga0307516_10009785
164 Ga0373955_0195615
165 Ga0316574_0033506
166 Ga0316574_0052522
167 Ga0316574_0064034
168 Ga0373927_0030774
169 Ga0373937_0040251
170 Ga0316582_0102742
171 Ga0316582_0359643
172 Ga0316584_0031184
173 Ga0316584_0053494
174 Ga0316584_0102424
175 Ga0316584_0169454
176 Ga0373925_0087140
177 Ga0373925_0177370
178 Ga0400484_26449
179 Ga0400490_34472
180 Ga0400488_59215
181 Ga0400483_041422
182 Ga0400483_255217
183 Ga0400489_16633
184 Ga0400489_55987
185 Ga0400489_81571
186 Ga0400489_92311
187 Ga0436365_0178884
188 Ga0436365_0363756
189 Ga0451789_0748474
190 Ga0451791_0409425
191 Ga0451797_0439921
192 Ga0451807_0975804
193 Ga0451577_0000281
194 Ga0451577_0018819
195 Ga0451577_0021965
196 Ga0453683_0067239
197 Ga0453684_0004345
198 Ga0453684_0011823
199 Ga0453684_0013471
200 Ga0453684_0014583
201 Ga0453684_0038311
202 Ga0453684_0045605
203 Ga0453684_0116788
204 Ga0453684_0194546
205 Ga0453684_0260130
206 Ga0466960_0039791
207 Ga0451576_0000412
208 Ga0451576_0068603
209 Ga0495629_0242147
210 Ga0501034_0321345
211 Ga0501043_0037821
212 Ga0501047_0002349
213 Ga0501047_0038916
214 Ga0501067_0007963
215 Ga0501067_0048537
216 Ga0501068_0000490
217 Ga0501069_0040815
218 Ga0501070_0028005
219 Ga0501072_0000001
220 Ga0501073_0058569
221 Ga0501073_0085422
222 Ga0501074_0019281
223 Ga0501074_0024225
224 Ga0501079_0006980
225 Ga0501080_0008408
226 Ga0501080_0011853
227 Ga0501080_0159108
228 Ga0501080_0224953
229 Ga0501083_0000694
230 Ga0501083_0002125
231 Ga0501083_0006605
232 Ga0501035_0156743
233 Ga0501044_0249236
234 nmdc:mga09592_100712_c1
235 nmdc:mga08y16_272618_c1
236 nmdc:mga0a205_469802_c1
237 Ga0501084_0000079
238 Ga0501084_0000613
239 Ga0501082_0001707
240 Ga0501082_0032192
241 Ga0501082_0477973
242 Ga0466962_0044460
243 Ga0530510_0035312
244 2738692486
245 2739323576
246 2739608949
247 2760303601
248 2760622541
249 2809027286
250 2810365788
251 2835190467
252 2905927292
253 2946004993
254 8056584028

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02899

Phage_int_SAM_1

Phage integrase, N-terminal SAM-like domain

16

99

0.93

PF00589

Phage_integrase

Phage integrase family

120

300

0.9

Structural Annotation

Top 5 Hits

ID Description Score Start End
2oxo-assembly1.cif.gz_A crystallization and structure determination of the core-binding domain of bacteriophage lambda integrase 0.8378 7 103
3nrw-assembly1.cif.gz_A crystal structure of the n-terminal domain of phage integrase/site-specific recombinase (tnp) from haloarcula marismortui, northeast structural genomics consortium target hmr208a 0.8341 3 108
2kob-assembly1.cif.gz_A solution nmr structure of clolep_01837 (fragment 61-160) from clostridium leptum. northeast structural genomics consortium target qlr8a 0.8252 3 110
3nrw-assembly1.cif.gz_A crystal structure of the n-terminal domain of phage integrase/site-specific recombinase (tnp) from haloarcula marismortui, northeast structural genomics consortium target hmr208a 0.82 3 108
2oxo-assembly1.cif.gz_A crystallization and structure determination of the core-binding domain of bacteriophage lambda integrase 0.8141 7 103
ID Description Score Start End Superfamily
af_P0A8P6_5_99_1.10.150.130 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.9285 9 102 1.10.150.130
af_P9WF33_119_304_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.9135 117 301 1.10.443.10
af_Q2FZ30_110_286_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.9119 118 301 1.10.443.10
af_P0A8P6_113_288_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.9107 123 302 1.10.443.10
af_Q2FZ30_110_286_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.9022 118 301 1.10.443.10
ID Description Score Start End GO Terms
AF-A0A370QA23-F1-model_v4 Tyrosine recombinase XerC 0.9209 13 309 GO:0003677
GO:0005737
GO:0006313
GO:0007059
GO:0009037
GO:0051301
AF-A0A7S4A9F3-F1-model_v4 Tyr recombinase domain-containing protein 0.9201 112 274 GO:0003677
GO:0006310
GO:0015074
AF-B9DPG4-F1-model_v4 Tyrosine recombinase XerC 0.9132 10 313 GO:0003677
GO:0005737
GO:0006313
GO:0007059
GO:0009037
GO:0051301
AF-A0A7S4A9F3-F1-model_v4 Tyr recombinase domain-containing protein 0.909 112 274 GO:0003677
GO:0006310
GO:0015074
AF-A0A842VHS0-F1-model_v4 Tyrosine-type recombinase/integrase 0.908 8 266 GO:0003677
GO:0006310
GO:0015074

Map