F056619

General Info

Members Datasets Scaffolds Average Seq Length
109 70 97 425

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2903727486|2903731936
Length 462
Sequence IKDFFMNIAIPRENIDLPVELVVSAAGPAATLNESATPPPSQPAKEAAAPVATSGSAEQPKRAYPAPVPIPTQSTDEGIRFDFNDGARIVCPPSEQPWKVTLRDLDTGNVLFETQFAGGHVNSSKRYFIRFSIEITHDGKNVLTHEYSAKDREILIQFPVGTLGDPMGWFPYAVKFKEKHGCKLTCAMGAPLISLFRDAYPDIEFVTHEELKPERYYATYSIGLFFDDKDFIYQPTDFRHVGLHRTAGYILGVDPTEQAPRIVIENDTRPISEPYVCIAVQSTTQSKYWNNPGGWREIVAFLKEAGYRVVCIDQKATHGTGLVWNHIPNGAEDQTGDKSLAERFRYLRHADFFVGLSSGLSWLAWAAGIPVVMISGFTHPTNEFDTPHRVINYHACNSCWNDPRVRFDHKDFLWCPRHANTPRQFECTRLITVDQVKQVIAHVPGFPVGARKSSKALKNKST

Samples

Sample ID Description Type Environment
1 2824704595 Bradyrhizobium sp. HAMBI 2150 Isolate Unclassified
2 2824753945 Bradyrhizobium sp. HAMBI 2128 Isolate Unclassified
3 2824763712 Bradyrhizobium sp. HAMBI 2129 Isolate Unclassified
4 2885374607 Bradyrhizobium sp. NAS96.2 Isolate Unclassified
5 2903727486 Bradyrhizobium guangzhouense CCBAU 53424 Isolate Unclassified
6 2903748898 Bradyrhizobium uaiense UFLA 03-164 Isolate Nodule
7 2904711408 Bradyrhizobium sp. USDA 3456 Isolate Unclassified
8 2908739725 Bradyrhizobium sp. UFLA03-84 Isolate Nodule
9 2922425934
10 3005474847 Bradyrhizobium sp. CCBAU 53421 Isolate Nodule
11 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
16 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
17 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
18 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
19 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
20 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
21 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
22 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
23 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
24 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
25 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
26 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
27 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
28 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
29 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
30 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
36 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
37 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
38 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
39 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
40 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
41 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
42 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
43 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
44 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
45 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
46 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
47 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
48 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
49 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
50 3300044659 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2E Metagenome Unclassified
51 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
52 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
53 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
54 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
55 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
56 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
57 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
58 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
59 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
60 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
61 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
62 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
63 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
64 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
65 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
66 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
67 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
68 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
69 3300053733 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 endosphere Metagenome Endosphere
70 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.96
Metatranscriptomes 2.78
Isolates 9.26

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.42
Nodule 3.67
Rhizoplane 1.83
Rhizosphere 68.81
Stem 0
Stem Tuber 0
Unclassified 19.27

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10009333 3300003215 Bacteria 4579
2 Ga0070711_100188834 3300005439 Bacteria 1582
3 Ga0070679_100084370 3300005530 Bacteria 3165
4 Ga0070665_100006973 3300005548 Bacteria 11486
5 Ga0070717_10086633 3300006028 Bacteria 2637
6 Ga0070717_10314674 3300006028 Bacteria 1394
7 Ga0075365_10008223 3300006038 Bacteria 5905
8 Ga0075366_10005815 3300006195 Bacteria 6699
9 Ga0105240_10071397 3300009093 Bacteria 4294
10 Ga0105240_10086455 3300009093 Bacteria 3840
11 Ga0105237_10108003 3300009545 Bacteria 2775
12 Ga0105238_10012132 3300009551 Bacteria 8685
13 Ga0105239_10025192 3300010375 Bacteria 6552
14 Ga0157370_10051643 3300013104 Unclassified 3927
15 Ga0157369_10000197 3300013105 Bacteria 84466
16 Ga0206356_10277608 3300020070 Bacteria 3258
17 Ga0213872_10005300 3300021361 Bacteria 6663
18 Ga0213872_10007842 3300021361 Bacteria 5216
19 Ga0213872_10015027 3300021361 Bacteria 3601
20 Ga0213872_10015427 3300021361 Bacteria 3551
21 Ga0213872_10031535 3300021361 Bacteria 2429
22 Ga0213872_10033857 3300021361 Bacteria 2340
23 Ga0213872_10057332 3300021361 Bacteria 1763
24 Ga0213875_10000775 3300021388 Bacteria 23868
25 Ga0213875_10005552 3300021388 Bacteria 6753
26 Ga0213875_10006597 3300021388 Bacteria 6072
27 Ga0224712_10000983 3300022467 Bacteria 6204
28 Ga0209233_1002135 3300025261 Bacteria 7435
29 Ga0209758_1000188 3300025297 Bacteria 138749
30 Ga0207707_10152681 3300025912 Bacteria 2019
31 Ga0207695_10075227 3300025913 Bacteria 3436
32 Ga0207695_10290843 3300025913 Bacteria 1526
33 Ga0207694_10038993 3300025924 Bacteria 3654
34 Ga0207661_10001335 3300025944 Bacteria 16538
35 Ga0268266_10072250 3300028379 Bacteria 2991
36 Ga0265760_10005019 3300031090 Bacteria 3789
37 Ga0265328_10000559 3300031239 Bacteria 17310
38 Ga0265340_10023834 3300031247 Bacteria 3115
39 Ga0265327_10004540 3300031251 Bacteria 12237
40 Ga0265313_10015893 3300031595 Bacteria 4355
41 Ga0373925_0067953 3300037068 Bacteria 2689
42 Ga0395900_0000074 3300037418 Bacteria 184491
43 Ga0395900_0005210 3300037418 Bacteria 13636
44 Ga0395898_0000254 3300037466 Bacteria 131247
45 Ga0395898_0006526 3300037466 Bacteria 12460
46 Ga0436364_0180265 3300037853 Bacteria 21128
47 Ga0436364_0424153 3300037853 Bacteria 25108
48 Ga0436364_0468804 3300037853 Bacteria 6474
49 Ga0436364_0814562 3300037853 Bacteria 2327
50 Ga0436364_0863384 3300037853 Bacteria 30325
51 Ga0395901_0000302 3300038443 Bacteria 61152
52 Ga0395901_0005728 3300038443 Bacteria 12580
53 Ga0395901_0027958 3300038443 Bacteria 5799
54 Ga0395901_0205762 3300038443 Bacteria 2062
55 Ga0436365_0179866 3300039437 Bacteria 3164
56 Ga0436365_1540873 3300039437 Bacteria 18330
57 Ga0436365_1616824 3300039437 Bacteria 5131
58 Ga0436360_0505239 3300039438 Bacteria 2845
59 Ga0436361_0001261 3300039447 Bacteria 4601
60 Ga0436361_0055621 3300039447 Bacteria 137129
61 Ga0436361_0106532 3300039447 Bacteria 4636
62 Ga0436361_0295584 3300039447 Bacteria 3162
63 Ga0436361_0512242 3300039447 Bacteria 2301
64 Ga0436361_0656532 3300039447 Bacteria 9408
65 Ga0436361_0805188 3300039447 Bacteria 41492
66 Ga0436361_0982036 3300039447 Bacteria 5573
67 Ga0436361_1081652 3300039447 Bacteria 4446
68 Ga0436362_0858355 3300039453 Bacteria 7866
69 Ga0466969_0002052 3300044656 Bacteria 10752
70 Ga0466969_0039701 3300044656 Bacteria 2362
71 Ga0466973_0083011 3300044659 Bacteria 2797
72 Ga0466966_0000531 3300044684 Bacteria 24234
73 Ga0466966_0006765 3300044684 Bacteria 7590
74 Ga0466961_0000013 3300044693 Bacteria 129640
75 Ga0466963_0014741 3300044694 Bacteria 4824
76 Ga0466963_0150561 3300044694 Bacteria 1615
77 Ga0466971_0009951 3300044719 Bacteria 4153
78 Ga0466957_0004922 3300044842 Bacteria 7473
79 Ga0466959_0000767 3300045049 Bacteria 18801
80 Ga0466959_0009454 3300045049 Bacteria 6935
81 Ga0466959_0036535 3300045049 Bacteria 3631
82 Ga0466958_0005056 3300045836 Bacteria 7046
83 Ga0466958_0017943 3300045836 Bacteria 4100
84 Ga0466958_0111421 3300045836 Bacteria 1708
85 Ga0495628_0032802 3300046516 Bacteria 4189
86 Ga0495622_0000005 3300046557 Bacteria 254434
87 Ga0495672_0007493 3300047320 Bacteria 8201
88 Ga0496104_0053477 3300048907 Bacteria 3815
89 Ga0496105_0090826 3300048908 Bacteria 2522
90 Ga0496119_0006083 3300048922 Bacteria 11304
91 Ga0501034_0004456 3300049571 Bacteria 15570
92 Ga0501070_0091901 3300049586 Bacteria 2512
93 Ga0501074_0051044 3300049590 Bacteria 2985
94 Ga0501080_0091755 3300049742 Bacteria 2821
95 Ga0500595_012369 3300053119 Bacteria 3304
96 Ga0500552_000802 3300053733 Bacteria 2950
97 Ga0466962_0010227 3300061719 Bacteria 4505

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2903748898 2903754410 370
2 3300049742 Ga0501080_0091755 Ga0501080_0091755_26_1168 380
3 3300009551 Ga0105238_10012132 Ga0105238_100121323 394
4 3300025924 Ga0207694_10038993 Ga0207694_100389933 394
5 3300005548 Ga0070665_100006973 Ga0070665_1000069733 395
6 3300028379 Ga0268266_10072250 Ga0268266_100722502 395
7 3300053119 Ga0500595_012369 Ga0500595_012369_1500_2792 395
8 3300009545 Ga0105237_10108003 Ga0105237_101080032 396
9 3300021361 Ga0213872_10007842 Ga0213872_100078422 398
10 3300021388 Ga0213875_10006597 Ga0213875_100065972 398
11 3300039447 Ga0436361_0656532 Ga0436361_0656532_3252_4550 398
12 3300037853 Ga0436364_0468804 Ga0436364_0468804_1171_2538 399
13 3300031251 Ga0265327_10004540 Ga0265327_1000454010 401
14 3300037418 Ga0395900_0000074 Ga0395900_0000074_93629_94849 401
15 3300053733 Ga0500552_000802 Ga0500552_000802_110_1360 401
16 3300039447 Ga0436361_0982036 Ga0436361_0982036_3909_5132 402
17 3300021361 Ga0213872_10031535 Ga0213872_100315352 403
18 3300020070 Ga0206356_10277608 Ga0206356_102776082 404
19 3300022467 Ga0224712_10000983 Ga0224712_100009832 404
20 3300046516 Ga0495628_0032802 Ga0495628_0032802_2302_3522 405
21 3300009093 Ga0105240_10086455 Ga0105240_100864554 406
22 3300010375 Ga0105239_10025192 Ga0105239_100251922 406
23 3300025913 Ga0207695_10075227 Ga0207695_100752274 406
24 3300021361 Ga0213872_10033857 Ga0213872_100338572 407
25 3300037853 Ga0436364_0814562 Ga0436364_0814562_70_1293 407
26 3300039447 Ga0436361_0295584 Ga0436361_0295584_1047_2276 407
27 3300031247 Ga0265340_10023834 Ga0265340_100238342 411
28 3300044656 Ga0466969_0039701 Ga0466969_0039701_23_1330 411
29 3300031595 Ga0265313_10015893 Ga0265313_100158932 412
30 3300037466 Ga0395898_0006526 Ga0395898_0006526_7000_8262 412
31 3300038443 Ga0395901_0000302 Ga0395901_0000302_41506_42768 412
32 3300039437 Ga0436365_0179866 Ga0436365_0179866_615_1940 412
33 3300037068 Ga0373925_0067953 Ga0373925_0067953_1181_2575 413
34 3300047320 Ga0495672_0007493 Ga0495672_0007493_5180_6502 413
35 3300048907 Ga0496104_0053477 Ga0496104_0053477_2103_3419 413
36 3300048908 Ga0496105_0090826 Ga0496105_0090826_676_1992 413
37 3300009093 Ga0105240_10071397 Ga0105240_100713972 414
38 3300013104 Ga0157370_10051643 Ga0157370_100516432 414
39 3300013105 Ga0157369_10000197 Ga0157369_100001973 414
40 3300021388 Ga0213875_10005552 Ga0213875_100055524 414
41 3300037853 Ga0436364_0180265 Ga0436364_0180265_17574_18878 414
42 3300037853 Ga0436364_0424153 Ga0436364_0424153_17359_18678 414
43 iso_pu_bacteria 2908739725 2908745897 414
44 3300021361 Ga0213872_10015027 Ga0213872_100150272 415
45 3300021361 Ga0213872_10057332 Ga0213872_100573322 415
46 3300037853 Ga0436364_0424153 Ga0436364_0424153_11496_12755 415
47 3300039447 Ga0436361_0001261 Ga0436361_0001261_2365_3618 415
48 3300039447 Ga0436361_0512242 Ga0436361_0512242_872_2125 415
49 3300039447 Ga0436361_0805188 Ga0436361_0805188_5692_6990 415
50 3300021361 Ga0213872_10005300 Ga0213872_100053004 416
51 3300021361 Ga0213872_10015427 Ga0213872_100154272 416
52 3300021388 Ga0213875_10000775 Ga0213875_1000077522 416
53 3300037853 Ga0436364_0863384 Ga0436364_0863384_222_1559 416
54 3300039447 Ga0436361_0055621 Ga0436361_0055621_108923_110179 416
55 3300039447 Ga0436361_0106532 Ga0436361_0106532_1089_2345 416
56 3300045836 Ga0466958_0005056 Ga0466958_0005056_2888_4144 416
57 3300005439 Ga0070711_100188834 Ga0070711_1001888342 417
58 3300039438 Ga0436360_0505239 Ga0436360_0505239_822_2129 417
59 3300025261 Ga0209233_1002135 Ga0209233_10021352 418
60 3300039447 Ga0436361_1081652 Ga0436361_1081652_2319_3626 418
61 3300039453 Ga0436362_0858355 Ga0436362_0858355_4489_5796 418
62 3300044684 Ga0466966_0000531 Ga0466966_0000531_20809_22101 418
63 3300044693 Ga0466961_0000013 Ga0466961_0000013_26277_27569 418
64 3300045049 Ga0466959_0000767 Ga0466959_0000767_17050_18342 418
65 iso_pu_bacteria 2885374607 2885382876 418
66 iso_pu_bacteria 2922425934 2922433150 418
67 3300045836 Ga0466958_0017943 Ga0466958_0017943_2719_4020 420
68 3300038443 Ga0395901_0205762 Ga0395901_0205762_65_1387 421
69 3300045049 Ga0466959_0036535 Ga0466959_0036535_1877_3148 421
70 3300049586 Ga0501070_0091901 Ga0501070_0091901_840_2165 421
71 3300006028 Ga0070717_10086633 Ga0070717_100866332 422
72 3300049571 Ga0501034_0004456 Ga0501034_0004456_5267_6613 422
73 iso_pu_bacteria 3005474847 3005480772 422
74 3300006028 Ga0070717_10314674 Ga0070717_103146741 424
75 3300045836 Ga0466958_0111421 Ga0466958_0111421_325_1632 425
76 3300049590 Ga0501074_0051044 Ga0501074_0051044_316_1650 426
77 3300006038 Ga0075365_10008223 Ga0075365_100082232 427
78 3300048922 Ga0496119_0006083 Ga0496119_0006083_7866_9158 428
79 iso_pu_bacteria 3005474847 3005482777 428
80 3300031239 Ga0265328_10000559 Ga0265328_100005597 429
81 3300039437 Ga0436365_1616824 Ga0436365_1616824_3407_4801 429
82 3300044656 Ga0466969_0002052 Ga0466969_0002052_7774_9078 429
83 3300044659 Ga0466973_0083011 Ga0466973_0083011_1375_2679 429
84 3300044684 Ga0466966_0006765 Ga0466966_0006765_4748_6052 429
85 3300044694 Ga0466963_0150561 Ga0466963_0150561_288_1592 429
86 3300044719 Ga0466971_0009951 Ga0466971_0009951_2611_3915 429
87 3300044842 Ga0466957_0004922 Ga0466957_0004922_5756_7060 429
88 3300045049 Ga0466959_0009454 Ga0466959_0009454_1417_2721 429
89 3300061719 Ga0466962_0010227 Ga0466962_0010227_2644_3948 429
90 3300037418 Ga0395900_0005210 Ga0395900_0005210_5972_7354 430
91 3300037466 Ga0395898_0000254 Ga0395898_0000254_15476_16783 430
92 3300038443 Ga0395901_0005728 Ga0395901_0005728_8822_10129 430
93 3300038443 Ga0395901_0027958 Ga0395901_0027958_2041_3348 430
94 3300044694 Ga0466963_0014741 Ga0466963_0014741_1781_3088 430
95 iso_pu_bacteria 2824704595 2824710525 430
96 iso_pu_bacteria 2824753945 2824756708 430
97 iso_pu_bacteria 2824763712 2824770891 430
98 iso_pu_bacteria 2904711408 2904716932 430
99 3300046557 Ga0495622_0000005 Ga0495622_0000005_32057_33364 432
100 3300025944 Ga0207661_10001335 Ga0207661_1000133510 434
101 3300005530 Ga0070679_100084370 Ga0070679_1000843702 435
102 3300025912 Ga0207707_10152681 Ga0207707_101526811 435
103 3300025913 Ga0207695_10290843 Ga0207695_102908431 435
104 3300006195 Ga0075366_10005815 Ga0075366_100058153 436
105 3300031090 Ga0265760_10005019 Ga0265760_100050193 437
106 3300039437 Ga0436365_1540873 Ga0436365_1540873_5876_7687 438
107 iso_pu_bacteria 2903727486 2903731936 439
108 3300003215 JGI25153J46596_10009333 JGI25153J46596_100093332 454
109 3300025297 Ga0209758_1000188 Ga0209758_100018812 454

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21129

TibC_1st

Glycosyltransferase TibC, N-terminal domain

76

139

0.96

PF01075

Glyco_transf_9

Glycosyltransferase family 9 (heptosyltransferase)

252

405

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
4rb4-assembly1.cif.gz_A crystal structure of dodecameric iron-containing heptosyltransferase tibc in complex with adp-d-beta-d-heptose at 3.9 angstrom resolution 0.9254 53 434
4rap-assembly1.cif.gz_A crystal structure of bacterial iron-containing dodecameric glycosyltransferase tibc from enterotoxigenic e.coli h10407 0.9235 53 434
4rb4-assembly1.cif.gz_B crystal structure of dodecameric iron-containing heptosyltransferase tibc in complex with adp-d-beta-d-heptose at 3.9 angstrom resolution 0.9228 53 434
4rap-assembly1.cif.gz_J crystal structure of bacterial iron-containing dodecameric glycosyltransferase tibc from enterotoxigenic e.coli h10407 0.9216 53 434
4rb4-assembly1.cif.gz_D crystal structure of dodecameric iron-containing heptosyltransferase tibc in complex with adp-d-beta-d-heptose at 3.9 angstrom resolution 0.9203 53 434
ID Description Score Start End Superfamily
1pswA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.7618 262 382 3.40.50.2000
3sd2A01 Mainly Beta;Sandwich;Immunoglobulin-like; 0.6986 75 138 2.60.40.3080
2h1fB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.6891 265 431 3.40.50.2000
af_K7MYB0_202_456_3.40.50.360 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Flavodoxin domain 0.6795 258 366 3.40.50.360
af_A0A0G2JXZ9_583_662_2.60.40.10 Mainly Beta;Sandwich;Immunoglobulin-like;Immunoglobulins 0.6732 67 127 2.60.40.10
ID Description Score Start End GO Terms
AF-A0A6P1BXS9-F1-model_v4 Autotransporter strand-loop-strand O-heptosyltransferase 0.9611 186 374 GO:0005829
GO:0008713
GO:0009244
AF-A0A6P1BXS9-F1-model_v4 Autotransporter strand-loop-strand O-heptosyltransferase 0.9562 186 374 GO:0005829
GO:0008713
GO:0009244
AF-G5S5H8-F1-model_v4 Glycosyltransferase TibC 0.9444 51 382 GO:0005829
GO:0008713
GO:0009244
AF-A0A1U9XF08-F1-model_v4 Glycosyltransferase TibC (EC 2.4.-.-) 0.943 50 251 GO:0016757
AF-A0A0U2P7T2-F1-model_v4 deleted 0.9412 51 440

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