F450677

General Info

Members Datasets Scaffolds Average Seq Length
471 357 218 295

Family's Representative Sequence

Representative Sequence 3300049581|Ga0501047_0002156|Ga0501047_0002156_2585_3574
Length 329
Sequence LSGIDERSSNRARKCSSLPEILFPGGFFLVTITVVGSINLDLIATVERLPAPGETVTGGDFSTAPGGKGANQALAARRAGAQVRMIGAVGKDAFAGEALSLLEGGGVDLSHVGRMHAPTGTALILVDAKGENVIAVVPGANKSVLPGDLAAAGLKKGEYLLLQQEIPLETVEGALKAAQKAGAVSVLNTAPFRAQAAAFIGEADYIVANETEFDLYADALSLPGGDRTRRMAAFAERTGRTLIVTLGAEGVLAAAPGEAISIPALKVKPVDTVGAGDTFCGYLAASLASGLPLERALRRATAAASLACLKEGAQPSVPLAAEVDRAVKG

Samples

Sample ID Description Type Environment
1 2510917026 Rhizobium sp. CF80 Isolate Rhizosphere
2 2511231052 Sinorhizobium meliloti AK58 Isolate Nodule
3 2512047086 Sinorhizobium arboris LMG 14919 Isolate Nodule
4 2512875026 Sinorhizobium medicae WSM1115 Isolate Nodule
5 2513237086 Sinorhizobium meliloti MVII-I Isolate Nodule
6 2513237089 Sinorhizobium medicae DI28 Isolate Nodule
7 2513237091 Sinorhizobium meliloti RRI128 Isolate Nodule
8 2513237140 Sinorhizobium meliloti GVPV12 Isolate Nodule
9 2513237143 Sinorhizobium meliloti Mlalz-1 Isolate Nodule
10 2513237156 Sinorhizobium medicae WSM1369 Isolate Nodule
11 2513237159 Rhizobium giardinii bv. giardinii H152 Isolate Nodule
12 2513237160 Sinorhizobium medicae WSM244 Isolate Nodule
13 2513237351 Mesorhizobium alhagi CCNWXJ12-2 Isolate Nodule
14 2515154107 Sinorhizobium meliloti 4H41 Isolate Nodule
15 2516143018 Ensifer sp. BR816 Isolate Nodule
16 2516653046 Sinorhizobium meliloti BO21CC Isolate Nodule
17 2517487022 Sinorhizobium medicae WSM4191 Isolate Nodule
18 2524023207 Ensifer sp. USDA 6670 Isolate Nodule
19 2551306084 Sinorhizobium meliloti 5A14 Isolate Nodule
20 2551306085 Sinorhizobium meliloti AE608H Isolate Nodule
21 2551306086 Sinorhizobium meliloti AK11 Isolate Nodule
22 2551306087 Sinorhizobium meliloti A0643DD Isolate Nodule
23 2551306089 Sinorhizobium meliloti 1A42 Isolate Nodule
24 2551306090 Sinorhizobium meliloti A0641M Isolate Nodule
25 2551306091 Sinorhizobium meliloti C0431A Isolate Nodule
26 2551306092 Sinorhizobium meliloti AK75 Isolate Nodule
27 2551306093 Sinorhizobium meliloti C0438LL Isolate Nodule
28 2558860983 Allorhizobium undicola ATCC 700741 Isolate Rhizoplane
29 2582581283 Rhizobium sp. OK665 Isolate Rhizosphere
30 2582581294 Rhizobium sp. CF394 Isolate Rhizosphere
31 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
32 2585427633 Neorhizobium galegae bv. officinalis HAMBI 1141 Isolate Nodule
33 2585427634 Neorhizobium galegae bv. orientalis HAMBI 540 Isolate Nodule
34 2599185156 Rhizobium sp. NFR03 Isolate Rhizoplane
35 2643221551 Mesorhizobium sp. Root1471 Isolate Unclassified
36 2643221555 Mesorhizobium sp. Root554 Isolate Unclassified
37 2643221591 Devosia sp. Root685 Isolate Unclassified
38 2643221607 Rhizobium sp. Root73 Isolate Unclassified
39 2643221623 Aminobacter sp. DSM 101952 Root100 Isolate Unclassified
40 2643221629 Devosia sp. Root105 Isolate Unclassified
41 2643221636 Rhizobium sp. Root1204 Isolate Unclassified
42 2643221662 Devosia sp. Root413D1 Isolate Unclassified
43 2643221686 Rhizobium sp. Root1334 Isolate Unclassified
44 2643221688 Rhizobium sp. Root482 Isolate Unclassified
45 2657244999 Sinorhizobium sojae CCBAU 05684 Isolate Unclassified
46 2690316117 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
47 2738543024 Aminobacter sp. AP02 Isolate Unclassified
48 2751185821 Ensifer shofinae CCBAU 251167 Isolate Unclassified
49 2757320392 Phyllobacterium leguminum ORS 1419 Isolate Nodule
50 2775507049 Rhizobium sp. ACO-34A Isolate Unclassified
51 2791355082 Ensifer alkalisoli YIC4027 Isolate Nodule
52 2791355094 Sinorhizobium sp. BJ1 Isolate Nodule
53 2802428858 Sinorhizobium medicae M14-1 Isolate Nodule
54 2802428859 Sinorhizobium medicae SF3.41 Isolate Nodule
55 2802428860 Sinorhizobium medicae M19-1 Isolate Nodule
56 2802428861 Sinorhizobium medicae USDA1037 Isolate Nodule
57 2802428862 Sinorhizobium medicae M7-4 Isolate Nodule
58 2802428863 Sinorhizobium medicae M26-2 Isolate Nodule
59 2802429268 Sinorhizobium sojae CCBAU 05684 Isolate Unclassified
60 2818991461 Neorhizobium alkalisoli 1225 Isolate Unclassified
61 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
62 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
63 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
64 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
65 2842521101 Rhizobium giardinii SEMIA 4084 Isolate Nodule
66 2842922631 Pararhizobium sp. R-72066 Isolate Unclassified
67 2847417321 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
68 2848992105 Sinorhizobium fredii CCBAU 25509 Isolate Unclassified
69 2854916844 Neorhizobium huautlense DSM 21817 Isolate Unclassified
70 2855825444 Sinorhizobium meliloti CXM1-105 Isolate Nodule
71 2855839649 Sinorhizobium meliloti AK555 Isolate Unclassified
72 2855872281 Sinorhizobium fredii PCH1 Isolate Nodule
73 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
74 2858800743 Sinorhizobium meliloti AK170 Isolate Unclassified
75 2871451962 Mesorhizobium sp. M7A.F.Ca.US.006.01.1.1 Isolate Nodule
76 2888350351 Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 Isolate Nodule
77 2891048133 Martelella lutilitoris GH2-6 Isolate Rhizosphere
78 2913295892 Sinorhizobium kostiensis DSM 13372 Isolate Nodule
79 2915980308 Sinorhizobium medicae USDA1149 Isolate Nodule
80 2915986958 Sinorhizobium meliloti USDA1659 Isolate Nodule
81 2915993759 Sinorhizobium meliloti USDA1336 Isolate Nodule
82 2916000859 Sinorhizobium meliloti USDA1562 Isolate Nodule
83 2916007675 Sinorhizobium meliloti USDA1289 Isolate Nodule
84 2916014648 Sinorhizobium meliloti USDA1583 Isolate Nodule
85 2916021584 Sinorhizobium meliloti USDA1550 Isolate Nodule
86 2916028427 Sinorhizobium meliloti USDA1613 Isolate Nodule
87 2916035215 Sinorhizobium meliloti 3011 Isolate Nodule
88 2916041962 Sinorhizobium meliloti USDA1795 Isolate Nodule
89 2916048683 Sinorhizobium meliloti USDA1796 Isolate Nodule
90 2916055098 Sinorhizobium meliloti USDA1770 Isolate Nodule
91 2916061851 Sinorhizobium medicae USDA1638 Isolate Nodule
92 2916068649 Sinorhizobium meliloti USDA1220 Isolate Nodule
93 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
94 2920760137 Ensifer psoraleae CCBAU 65732 Isolate Unclassified
95 2921201388 Sinorhizobium meliloti USDA1692 Isolate Nodule
96 2921208531 Sinorhizobium meliloti USDA1660 Isolate Nodule
97 2921237296 Sinorhizobium meliloti USDA1508 Isolate Nodule
98 2921244191 Sinorhizobium meliloti 2119 Isolate Nodule
99 2921250672 Sinorhizobium medicae USDA1169 Isolate Nodule
100 2921257292 Sinorhizobium meliloti USDA1320 Isolate Nodule
101 2921263974 Sinorhizobium meliloti USDA1107 Isolate Nodule
102 2921282425 Sinorhizobium meliloti USDA1203 Isolate Nodule
103 2921289301 Sinorhizobium meliloti USDA1730 Isolate Nodule
104 2921296804 Sinorhizobium meliloti USDA1200 Isolate Nodule
105 2924144063 Sinorhizobium meliloti USDA1022 Isolate Nodule
106 2924150972 Sinorhizobium meliloti USDA1700 Isolate Nodule
107 2924158325 Sinorhizobium meliloti USDA1146 Isolate Nodule
108 2924165586 Sinorhizobium meliloti USDA1264 Isolate Nodule
109 2924172951 Sinorhizobium meliloti USDA1626 Isolate Nodule
110 2924179722 Sinorhizobium meliloti USDA1280 Isolate Nodule
111 2924186466 Sinorhizobium meliloti USDA1389 Isolate Nodule
112 2924193448 Sinorhizobium meliloti USDA1158 Isolate Nodule
113 2924200457 Sinorhizobium meliloti USDA1007 Isolate Nodule
114 2924207177 Sinorhizobium meliloti USDA1589 Isolate Nodule
115 2924214083 Sinorhizobium meliloti USDA1702 Isolate Nodule
116 2924221636 Sinorhizobium meliloti USDA1416 Isolate Nodule
117 2924228884 Sinorhizobium meliloti USDA1581 Isolate Nodule
118 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
119 2932401849 Devosia sp. 2618 Isolate Rhizosphere
120 2936996657 Sinorhizobium meliloti USDA1025 Isolate Nodule
121 2937002841 Sinorhizobium meliloti USDA1006 Isolate Nodule
122 2937009748 Sinorhizobium meliloti USDA1162 Isolate Nodule
123 2937016420 Sinorhizobium meliloti USDA1027 Isolate Nodule
124 2937023124 Sinorhizobium meliloti USDA1335 Isolate Nodule
125 2937029754 Sinorhizobium medicae USDA1624 Isolate Nodule
126 2937036028 Sinorhizobium medicae USDA1608 Isolate Nodule
127 2937049772 Sinorhizobium meliloti USDA1691 Isolate Nodule
128 2937056579 Sinorhizobium meliloti USDA1357 Isolate Nodule
129 2937063883 Sinorhizobium meliloti USDA1808 Isolate Nodule
130 2937071275 Sinorhizobium meliloti USDA1623 Isolate Nodule
131 2937078374 Sinorhizobium medicae USDA1004 Isolate Nodule
132 2937084907 Sinorhizobium medicae USDA1664 Isolate Nodule
133 2937091812 Sinorhizobium meliloti USDA1221 Isolate Nodule
134 2937098957 Sinorhizobium meliloti USDA1519 Isolate Nodule
135 2937106411 Sinorhizobium meliloti USDA1214 Isolate Nodule
136 2937113482 Sinorhizobium meliloti USDA1180 Isolate Nodule
137 2937119839 Sinorhizobium meliloti USDA1790 Isolate Nodule
138 2937126314 Sinorhizobium meliloti USDA1612 Isolate Nodule
139 2957375807 Sinorhizobium medicae USDA1632 Isolate Nodule
140 2957382221 Sinorhizobium meliloti USDA1919 Isolate Nodule
141 2957388812 Sinorhizobium meliloti USDA1195 Isolate Nodule
142 2957395598 Sinorhizobium meliloti USDA1237 Isolate Nodule
143 2957402308 Sinorhizobium meliloti USDA1794 Isolate Nodule
144 2957408893 Sinorhizobium meliloti USDA1163 Isolate Nodule
145 2957415311 Sinorhizobium meliloti USDA1724 Isolate Nodule
146 2957422303 Sinorhizobium meliloti USDA1497 Isolate Nodule
147 2957430029 Sinorhizobium meliloti USDA1590 Isolate Nodule
148 2957437181 Sinorhizobium medicae USDA1694 Isolate Nodule
149 2957443900 Sinorhizobium meliloti USDA1734 Isolate Nodule
150 2957450854 Sinorhizobium meliloti USDA1655 Isolate Nodule
151 2957457609 Sinorhizobium meliloti USDA1751 Isolate Nodule
152 2957464669 Sinorhizobium meliloti USDA1520 Isolate Nodule
153 2957471148 Sinorhizobium meliloti USDA1204 Isolate Nodule
154 2957478035 Sinorhizobium meliloti USDA1171 Isolate Nodule
155 2957484790 Sinorhizobium meliloti USDA1464 Isolate Nodule
156 2957498199 Sinorhizobium meliloti USDA1561 Isolate Nodule
157 2957505466 Sinorhizobium meliloti USDA1696 Isolate Nodule
158 2960584000 Sinorhizobium meliloti USDA1530 Isolate Nodule
159 2960591022 Sinorhizobium medicae USDA1066 Isolate Nodule
160 2960603979 Sinorhizobium meliloti USDA1580 Isolate Nodule
161 2960610863 Sinorhizobium meliloti USDA1792 Isolate Nodule
162 2960617483 Sinorhizobium meliloti USDA1719 Isolate Nodule
163 2960624210 Sinorhizobium meliloti USDA1415 Isolate Nodule
164 2960631154 Sinorhizobium medicae USDA1629 Isolate Nodule
165 2960637947 Sinorhizobium meliloti USDA1202 Isolate Nodule
166 2960645483 Sinorhizobium meliloti USDA1703 Isolate Nodule
167 2960652885 Sinorhizobium meliloti USDA1199 Isolate Nodule
168 2960660292 Sinorhizobium meliloti USDA1883 Isolate Nodule
169 2960667422 Sinorhizobium meliloti USDA1170 Isolate Nodule
170 2960674078 Sinorhizobium meliloti USDA1666 Isolate Nodule
171 2960680706 Sinorhizobium medicae USDA1150 Isolate Nodule
172 2960687367 Sinorhizobium meliloti USDA1462 Isolate Nodule
173 2960693952 Sinorhizobium medicae USDA1630 Isolate Nodule
174 2964607997 Sinorhizobium meliloti USDA1212 Isolate Nodule
175 2964615318 Sinorhizobium meliloti USDA1248 Isolate Nodule
176 2964621998 Sinorhizobium meliloti USDA1235 Isolate Nodule
177 2964628898 Sinorhizobium meliloti USDA1191 Isolate Nodule
178 2964636051 Sinorhizobium meliloti USDA1594 Isolate Nodule
179 2964643177 Sinorhizobium meliloti USDA1760 Isolate Nodule
180 2964649959 Sinorhizobium meliloti USDA1591 Isolate Nodule
181 2964656573 Sinorhizobium meliloti USDA1308 Isolate Nodule
182 2964663802 Sinorhizobium meliloti USDA1688 Isolate Nodule
183 2964670856 Sinorhizobium meliloti USDA1211 Isolate Nodule
184 2964678106 Sinorhizobium meliloti USDA1210 Isolate Nodule
185 2964685014 Sinorhizobium meliloti USDA1232 Isolate Nodule
186 2964691889 Sinorhizobium meliloti USDA1379 Isolate Nodule
187 2964698721 Sinorhizobium meliloti USDA1656 Isolate Nodule
188 2964705432 Sinorhizobium meliloti USDA1614 Isolate Nodule
189 2964719344 Sinorhizobium meliloti USDA1456 Isolate Nodule
190 2967664464 Sinorhizobium meliloti USDA1208 Isolate Nodule
191 2967671571 Sinorhizobium meliloti USDA1496 Isolate Nodule
192 2967678726 Sinorhizobium meliloti USDA1467 Isolate Nodule
193 2967686174 Sinorhizobium medicae USDA1641 Isolate Nodule
194 2967693043 Sinorhizobium meliloti USDA1183 Isolate Nodule
195 2967706974 Sinorhizobium meliloti USDA1206 Isolate Nodule
196 2967714385 Sinorhizobium meliloti USDA1023 Isolate Nodule
197 2967721400 Sinorhizobium meliloti USDA1742 Isolate Nodule
198 2967728569 Sinorhizobium medicae USDA1607 Isolate Nodule
199 2967735183 Sinorhizobium meliloti USDA1710 Isolate Nodule
200 2967748971 Sinorhizobium meliloti USDA1024A Isolate Nodule
201 2967755722 Sinorhizobium meliloti USDA1302 Isolate Nodule
202 2967762386 Sinorhizobium meliloti USDA1397 Isolate Nodule
203 2967769361 Sinorhizobium meliloti USDA1005 Isolate Nodule
204 2967775926 Sinorhizobium meliloti USDA1678 Isolate Nodule
205 2970019648 Sinorhizobium meliloti USDA1603 Isolate Nodule
206 2970026789 Sinorhizobium medicae USDA1611 Isolate Nodule
207 2970033650 Sinorhizobium meliloti USDA1565 Isolate Nodule
208 2970040964 Sinorhizobium meliloti USDA1501 Isolate Nodule
209 2970047711 Sinorhizobium meliloti USDA1793 Isolate Nodule
210 2970054988 Sinorhizobium meliloti USDA1031 Isolate Nodule
211 2970061556 Sinorhizobium meliloti USDA1810 Isolate Nodule
212 2970068827 Sinorhizobium meliloti USDA1227 Isolate Nodule
213 2970082768 Sinorhizobium meliloti USDA1803 Isolate Nodule
214 2970088815 Sinorhizobium meliloti USDA1819 Isolate Nodule
215 2970095765 Sinorhizobium meliloti USDA1225 Isolate Nodule
216 2970102677 Sinorhizobium meliloti USDA1325 Isolate Nodule
217 2970109326 Sinorhizobium meliloti USDA1186 Isolate Nodule
218 2970116247 Sinorhizobium meliloti USDA1566 Isolate Nodule
219 2970122695 Sinorhizobium medicae 3082 Isolate Nodule
220 2970129317 Sinorhizobium meliloti USDA1008 Isolate Nodule
221 2970136068 Sinorhizobium meliloti USDA1699 Isolate Nodule
222 2970143518 Sinorhizobium medicae USDA1652 Isolate Nodule
223 2970149975 Sinorhizobium meliloti USDA1215 Isolate Nodule
224 2970156795 Sinorhizobium meliloti USDA1491 Isolate Nodule
225 2970164137 Sinorhizobium meliloti USDA1018 Isolate Nodule
226 2970170962 Sinorhizobium meliloti USDA1571 Isolate Nodule
227 2970177841 Sinorhizobium meliloti USDA1533 Isolate Nodule
228 2970184632 Sinorhizobium meliloti USDA1593 Isolate Nodule
229 2970191845 Sinorhizobium meliloti USDA1187 Isolate Nodule
230 2977516862 Sinorhizobium meliloti USDA1791 Isolate Nodule
231 2977523885 Sinorhizobium meliloti USDA1777 Isolate Nodule
232 2977530762 Sinorhizobium medicae USDA1606 Isolate Nodule
233 2977537788 Sinorhizobium meliloti USDA1184 Isolate Nodule
234 2977544691 Sinorhizobium medicae USDA1631 Isolate Nodule
235 2977551784 Sinorhizobium meliloti USDA1035 Isolate Nodule
236 2977558990 Sinorhizobium meliloti USDA1222 Isolate Nodule
237 2977565890 Sinorhizobium meliloti USDA1617 Isolate Nodule
238 2977572785 Sinorhizobium meliloti USDA1767 Isolate Nodule
239 2977579622 Sinorhizobium meliloti USDA1161 Isolate Nodule
240 2978969890 Agrobacterium sp. SORGH_AS 787 Isolate Unclassified
241 2979742915 Mesorhizobium sp. M2A.F.Ca.ET.046.02.1.1 Isolate Nodule
242 2984587000 Agrobacterium larrymoorei SORGH_AS974 Isolate Aerial Root
243 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
244 2995392953 Martelella limonii NBRC 109441 Isolate Unclassified
245 3003930520 Sinorhizobium sp. BG8 Isolate Unclassified
246 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
247 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
248 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
249 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
250 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
251 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
252 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
253 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
254 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
255 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
256 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
257 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
258 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
259 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
260 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
261 3300013249 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 Metagenome Rhizosphere
262 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
263 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
264 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
265 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
266 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
267 3300022739 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - brown nodules Metagenome Nodule
268 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
269 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
270 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
271 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
272 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
273 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
274 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
275 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
276 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
277 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
278 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
279 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
280 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
281 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
282 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
283 3300031967 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules Metagenome Nodule
284 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
285 3300033430 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules Metagenome Nodule
286 3300033464 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - branched nodules Metagenome Nodule
287 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
288 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
289 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
290 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
291 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
292 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
293 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
294 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
295 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
296 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
297 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
298 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
299 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
300 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
301 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
302 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
303 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
304 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
305 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
306 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
307 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
308 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
309 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
310 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
311 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
312 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
313 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
314 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
315 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
316 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
317 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
318 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
319 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
320 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
321 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
322 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
323 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
324 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
325 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
326 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
327 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
328 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
329 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
330 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
331 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
332 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
333 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
334 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
335 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
336 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
337 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
338 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
339 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
340 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
341 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
342 3300053111 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 endosphere Metagenome Endosphere
343 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
344 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
345 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
346 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
347 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
348 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
349 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
350 643692032 Sinorhizobium fredii NGR234 Isolate Nodule
351 648276728 Sinorhizobium meliloti BL225C Isolate Nodule
352 8002285264 Aminobacter anthyllidis LMG 26462 Isolate Nodule
353 8003992118 Sinorhizobium meliloti RRI128 Isolate Nodule
354 8003999396 Sinorhizobium medicae WSM1115 Isolate Nodule
355 8049293176 Ensifer alkalisoli YIC4027 Isolate Nodule
356 8054460903 Agrobacterium vaccinii B7.6 Isolate Unclassified
357 8054558443 Rhizobium alarense TRM95111 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 46.28
Metatranscriptomes 0
Isolates 53.72

Biome Distribution

Category Percentage (%)
Aerial Root 0.21
Bulb 0
Endosphere 6.79
Nodule 47.77
Rhizoplane 0.64
Rhizosphere 32.91
Stem 0
Stem Tuber 0
Unclassified 11.68

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25158J39367_1003504 3300002739 Bacteria 2420
2 Ga0055536_1001918 3300003781 Bacteria 12049
3 Ga0055540_1002099 3300003792 Bacteria 10932
4 Ga0055540_1010943 3300003792 Bacteria 2975
5 Ga0055531_10005059 3300003794 Bacteria 7810
6 Ga0065165_1016200 3300005262 Bacteria 2802
7 Ga0070659_100156469 3300005366 Bacteria 1862
8 Ga0070665_100011298 3300005548 Bacteria 9030
9 Ga0070665_100033488 3300005548 Bacteria 5169
10 Ga0070665_100052605 3300005548 Bacteria 4084
11 Ga0068855_100593504 3300005563 Bacteria 1195
12 Ga0068856_100278983 3300005614 Bacteria 1688
13 Ga0068858_100412406 3300005842 Bacteria 1298
14 Ga0075370_10094346 3300006353 Bacteria 1728
15 Ga0079104_1000033 3300006946 Bacteria 202636
16 Ga0079104_1014631 3300006946 Bacteria 2359
17 Ga0105237_10000053 3300009545 Bacteria 158890
18 Ga0105239_10001462 3300010375 Bacteria 31410
19 Ga0157369_10134093 3300013105 Bacteria 2623
20 Ga0171463_1001 3300013249 Bacteria 1406070
21 Ga0157374_10027996 3300013296 Bacteria 5089
22 Ga0157372_10317595 3300013307 Bacteria 1813
23 Ga0214544_1000105 3300021320 Bacteria 114109
24 Ga0214542_1000029 3300021321 Bacteria 174097
25 Ga0214543_1000027 3300021327 Bacteria 215065
26 Ga0214543_1000040 3300021327 Bacteria 174142
27 Ga0228711_1000013 3300022739 Bacteria 132585
28 Ga0228710_1000008 3300022740 Bacteria 174306
29 Ga0209233_1001469 3300025261 Bacteria 9295
30 Ga0209676_1003420 3300025292 Bacteria 9790
31 Ga0209025_1000037 3300025294 Bacteria 383429
32 Ga0209758_1000170 3300025297 Bacteria 149476
33 Ga0209050_1003460 3300025298 Bacteria 11604
34 Ga0209051_1000945 3300025303 Bacteria 28676
35 Ga0209051_1002893 3300025303 Bacteria 11795
36 Ga0209051_1051516 3300025303 Bacteria 1368
37 Ga0209257_1001770 3300025304 Bacteria 23909
38 Ga0207671_10000555 3300025914 Bacteria 50279
39 Ga0209281_1000043 3300027111 Bacteria 341543
40 Ga0209281_1000134 3300027111 Bacteria 185406
41 Ga0209282_1000029 3300027666 Bacteria 157883
42 Ga0268266_10000708 3300028379 Bacteria 45085
43 Ga0268266_10031396 3300028379 Bacteria 4511
44 Ga0307515_10000112 3300028794 Bacteria 195015
45 Ga0307408_100047565 3300031548 Bacteria 3073
46 Ga0307413_10031354 3300031824 Bacteria 2999
47 Ga0315914_1000021 3300031967 Bacteria 119592
48 Ga0307414_10017220 3300032004 Bacteria 4415
49 Ga0307414_10028027 3300032004 Bacteria 3648
50 Ga0307414_10177903 3300032004 Bacteria 1708
51 Ga0315913_1000014 3300033430 Bacteria 120114
52 Ga0315915_1000003 3300033464 Bacteria 407996
53 Ga0316582_0013231 3300036647 Bacteria 4638
54 Ga0395899_0000044 3300037312 Bacteria 248735
55 Ga0395900_0000042 3300037418 Bacteria 242667
56 Ga0395898_0000080 3300037466 Bacteria 242667
57 Ga0395898_0013645 3300037466 Bacteria 8360
58 Ga0395905_0000044 3300037471 Bacteria 242916
59 Ga0395905_0006166 3300037471 Bacteria 12100
60 Ga0395901_0000027 3300038443 Bacteria 244204
61 Ga0395901_0140240 3300038443 Bacteria 2541
62 Ga0395901_0603259 3300038443 Bacteria 1107
63 Ga0439465_0101396 3300041413 Bacteria 994
64 Ga0451841_1310331 3300041498 Bacteria 940
65 Ga0439449_0004892 3300042007 Bacteria 5158
66 Ga0439449_0022561 3300042007 Bacteria 2358
67 Ga0439452_032721 3300042010 Bacteria 1268
68 Ga0450918_008168 3300042531 Bacteria 1843
69 Ga0466968_0172928 3300044735 Bacteria 1002
70 Ga0495638_0005429 3300046460 Bacteria 9484
71 Ga0495606_0271873 3300046507 Bacteria 931
72 Ga0495620_0016241 3300046515 Bacteria 3742
73 Ga0495654_0000392 3300046530 Bacteria 37521
74 Ga0495636_0119639 3300047318 Bacteria 1164
75 Ga0496111_0004790 3300048914 Bacteria 8583
76 Ga0496116_0077697 3300048919 Bacteria 2073
77 Ga0496116_0099895 3300048919 Bacteria 1736
78 Ga0496118_0044731 3300048921 Bacteria 3464
79 Ga0496121_0000806 3300048924 Bacteria 57063
80 Ga0496121_0009177 3300048924 Bacteria 11433
81 Ga0496121_0121524 3300048924 Bacteria 1972
82 Ga0496121_0313152 3300048924 Bacteria 1060
83 Ga0496122_0000018 3300048925 Bacteria 426350
84 Ga0496122_0011288 3300048925 Bacteria 9073
85 Ga0496122_0119537 3300048925 Bacteria 1703
86 Ga0496122_0141039 3300048925 Bacteria 1507
87 Ga0496123_0000015 3300048926 Bacteria 426088
88 Ga0496123_0013918 3300048926 Bacteria 6701
89 Ga0496124_0021207 3300048927 Bacteria 5990
90 Ga0496124_0132827 3300048927 Bacteria 1975
91 Ga0496125_0000270 3300048928 Bacteria 106118
92 Ga0496126_0018308 3300048929 Bacteria 6947
93 Ga0496126_0046480 3300048929 Bacteria 3981
94 Ga0496126_0059200 3300048929 Bacteria 3450
95 Ga0496126_0262411 3300048929 Bacteria 1436
96 Ga0501031_0018175 3300049568 Bacteria 4574
97 Ga0501031_0048560 3300049568 Bacteria 2765
98 Ga0501032_0003269 3300049569 Bacteria 12477
99 Ga0501032_0021376 3300049569 Bacteria 4497
100 Ga0501032_0052827 3300049569 Bacteria 2738
101 Ga0501032_0070459 3300049569 Bacteria 2332
102 Ga0501033_0000277 3300049570 Bacteria 49445
103 Ga0501033_0002166 3300049570 Bacteria 16971
104 Ga0501033_0005369 3300049570 Bacteria 10153
105 Ga0501033_0010125 3300049570 Bacteria 7236
106 Ga0501033_0011490 3300049570 Bacteria 6777
107 Ga0501033_0055247 3300049570 Bacteria 2936
108 Ga0501033_0164563 3300049570 Bacteria 1595
109 Ga0501034_0001008 3300049571 Bacteria 40385
110 Ga0501034_0009428 3300049571 Bacteria 10218
111 Ga0501034_0012852 3300049571 Bacteria 8633
112 Ga0501034_0014622 3300049571 Bacteria 8082
113 Ga0501034_0059203 3300049571 Bacteria 3848
114 Ga0501034_0113171 3300049571 Bacteria 2704
115 Ga0501034_0193339 3300049571 Bacteria 1996
116 Ga0501034_0248542 3300049571 Bacteria 1723
117 Ga0501036_0014563 3300049572 Bacteria 6549
118 Ga0501036_0043132 3300049572 Bacteria 3820
119 Ga0501036_0071013 3300049572 Bacteria 2944
120 Ga0501036_0073400 3300049572 Bacteria 2892
121 Ga0501037_0000047 3300049573 Bacteria 114757
122 Ga0501037_0119825 3300049573 Bacteria 1892
123 Ga0501038_0034142 3300049574 Bacteria 4475
124 Ga0501038_0060959 3300049574 Bacteria 3227
125 Ga0501038_0073681 3300049574 Bacteria 2891
126 Ga0501038_0202813 3300049574 Bacteria 1591
127 Ga0501039_0121323 3300049575 Bacteria 2048
128 Ga0501039_0304894 3300049575 Bacteria 1252
129 Ga0501040_0075469 3300049576 Bacteria 2330
130 Ga0501042_0083723 3300049578 Bacteria 2286
131 Ga0501043_0000032 3300049579 Bacteria 140037
132 Ga0501043_0028988 3300049579 Bacteria 4346
133 Ga0501043_0031284 3300049579 Bacteria 4184
134 Ga0501043_0057594 3300049579 Bacteria 3051
135 Ga0501043_0086916 3300049579 Bacteria 2457
136 Ga0501043_0172813 3300049579 Bacteria 1685
137 Ga0501043_0198844 3300049579 Bacteria 1556
138 Ga0501046_0064846 3300049580 Bacteria 2850
139 Ga0501046_0079170 3300049580 Bacteria 2541
140 Ga0501046_0161215 3300049580 Bacteria 1687
141 Ga0501047_0002156 3300049581 Bacteria 18820
142 Ga0501047_0010753 3300049581 Bacteria 8651
143 Ga0501047_0038004 3300049581 Bacteria 4656
144 Ga0501047_0073198 3300049581 Bacteria 3299
145 Ga0501047_0121246 3300049581 Bacteria 2497
146 Ga0501047_0164887 3300049581 Bacteria 2086
147 Ga0501047_0282632 3300049581 Bacteria 1504
148 Ga0501048_0037718 3300049582 Bacteria 3470
149 Ga0501067_0082462 3300049583 Bacteria 1783
150 Ga0501068_0123391 3300049584 Bacteria 1616
151 Ga0501068_0279124 3300049584 Bacteria 1067
152 Ga0501069_0000040 3300049585 Bacteria 81558
153 Ga0501069_0018093 3300049585 Bacteria 3801
154 Ga0501069_0063176 3300049585 Bacteria 2068
155 Ga0501069_0223558 3300049585 Bacteria 1095
156 Ga0501070_0000137 3300049586 Bacteria 66170
157 Ga0501070_0000160 3300049586 Bacteria 61662
158 Ga0501070_0002837 3300049586 Bacteria 15124
159 Ga0501070_0009713 3300049586 Bacteria 8136
160 Ga0501070_0014223 3300049586 Bacteria 6697
161 Ga0501070_0035952 3300049586 Bacteria 4136
162 Ga0501070_0077269 3300049586 Bacteria 2755
163 Ga0501070_0113064 3300049586 Bacteria 2244
164 Ga0501070_0134428 3300049586 Bacteria 2042
165 Ga0501070_0304109 3300049586 Bacteria 1299
166 Ga0501071_0007185 3300049587 Bacteria 7285
167 Ga0501071_0170612 3300049587 Bacteria 1628
168 Ga0501073_0029936 3300049589 Bacteria 3888
169 Ga0501073_0158822 3300049589 Bacteria 1567
170 Ga0501073_0306473 3300049589 Bacteria 1096
171 Ga0501074_0000014 3300049590 Bacteria 80359
172 Ga0501074_0006040 3300049590 Bacteria 8739
173 Ga0501074_0274400 3300049590 Bacteria 1199
174 Ga0501079_0365540 3300049741 Bacteria 1131
175 Ga0501080_0000116 3300049742 Bacteria 55473
176 Ga0501080_0039643 3300049742 Bacteria 4396
177 Ga0501080_0047016 3300049742 Bacteria 4017
178 Ga0501080_0377589 3300049742 Bacteria 1277
179 Ga0501083_0000062 3300049744 Bacteria 75924
180 Ga0501035_0000025 3300049822 Bacteria 204195
181 Ga0501035_0002031 3300049822 Bacteria 20173
182 Ga0501035_0002838 3300049822 Bacteria 16736
183 Ga0501035_0010112 3300049822 Bacteria 8757
184 Ga0501035_0017784 3300049822 Bacteria 6557
185 Ga0501035_0025296 3300049822 Bacteria 5442
186 Ga0501035_0043016 3300049822 Bacteria 4072
187 Ga0501035_0049863 3300049822 Bacteria 3752
188 Ga0501035_0060081 3300049822 Bacteria 3384
189 Ga0501035_0336117 3300049822 Bacteria 1266
190 Ga0501044_0000031 3300049823 Bacteria 173135
191 Ga0501044_0003628 3300049823 Bacteria 17366
192 Ga0501044_0020426 3300049823 Bacteria 7072
193 Ga0501044_0036648 3300049823 Bacteria 5130
194 Ga0501044_0037348 3300049823 Bacteria 5077
195 Ga0501044_0043033 3300049823 Bacteria 4693
196 Ga0501044_0058301 3300049823 Bacteria 3960
197 Ga0501044_0089578 3300049823 Bacteria 3105
198 Ga0501044_0092358 3300049823 Bacteria 3052
199 Ga0501044_0140928 3300049823 Bacteria 2399
200 Ga0501044_0231183 3300049823 Bacteria 1796
201 nmdc:mga03683_45116_c1 3300050489 Bacteria 1823
202 nmdc:mga0yw44_1063_c1 3300050492 Bacteria 10537
203 nmdc:mga07m45_127965_c1 3300050496 Bacteria 1469
204 Ga0500572_000904 3300053111 Bacteria 9168
205 Ga0500618_000131 3300053125 Bacteria 62441
206 Ga0500618_000603 3300053125 Bacteria 22085
207 Ga0500618_007357 3300053125 Bacteria 3148
208 Ga0500618_045057 3300053125 Bacteria 1007
209 Ga0500604_0001094 3300053151 Bacteria 7539
210 Ga0500604_0040897 3300053151 Bacteria 1400
211 Ga0500616_0000657 3300053153 Bacteria 41493
212 Ga0500627_0011486 3300053158 Bacteria 3274
213 Ga0500634_0000032 3300053161 Bacteria 74391
214 Ga0500636_0000022 3300053177 Bacteria 93090
215 Ga0500636_0003976 3300053177 Bacteria 8329
216 Ga0500636_0003979 3300053177 Bacteria 8326
217 Ga0501082_0009529 3300060353 Bacteria 8356
218 Ga0501082_0107217 3300060353 Bacteria 2417

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300041498 Ga0451841_1310331 Ga0451841_1310331_186_923 245
2 3300044735 Ga0466968_0172928 Ga0466968_0172928_109_849 245
3 3300046507 Ga0495606_0271873 Ga0495606_0271873_181_918 245
4 3300048924 Ga0496121_0313152 Ga0496121_0313152_284_1021 245
5 3300049586 Ga0501070_0304109 Ga0501070_0304109_15_752 245
6 3300053125 Ga0500618_045057 Ga0500618_045057_64_801 245
7 3300049572 Ga0501036_0071013 Ga0501036_0071013_13_759 248
8 iso_pu_bacteria 2924221636 2924227845 248
9 iso_pu_bacteria 2964719344 2964723124 251
10 3300049571 Ga0501034_0113171 Ga0501034_0113171_1518_2411 270
11 3300021320 Ga0214544_1000105 Ga0214544_100010550 272
12 3300021321 Ga0214542_1000029 Ga0214542_1000029119 272
13 3300021327 Ga0214543_1000040 Ga0214543_1000040119 272
14 3300005614 Ga0068856_100278983 Ga0068856_1002789832 273
15 3300025261 Ga0209233_1001469 Ga0209233_100146910 274
16 3300005563 Ga0068855_100593504 Ga0068855_1005935042 275
17 3300049580 Ga0501046_0079170 Ga0501046_0079170_1459_2367 275
18 3300049586 Ga0501070_0134428 Ga0501070_0134428_381_1289 275
19 3300049572 Ga0501036_0073400 Ga0501036_0073400_509_1414 276
20 3300049573 Ga0501037_0119825 Ga0501037_0119825_508_1413 276
21 3300049574 Ga0501038_0073681 Ga0501038_0073681_1479_2384 276
22 3300049575 Ga0501039_0121323 Ga0501039_0121323_504_1409 276
23 3300049576 Ga0501040_0075469 Ga0501040_0075469_1105_2010 276
24 3300049578 Ga0501042_0083723 Ga0501042_0083723_1012_1917 276
25 3300049579 Ga0501043_0198844 Ga0501043_0198844_149_1054 276
26 3300049580 Ga0501046_0064846 Ga0501046_0064846_1200_2105 276
27 3300049581 Ga0501047_0164887 Ga0501047_0164887_451_1356 276
28 3300049582 Ga0501048_0037718 Ga0501048_0037718_844_1749 276
29 3300049584 Ga0501068_0123391 Ga0501068_0123391_236_1141 276
30 3300049586 Ga0501070_0009713 Ga0501070_0009713_5902_6807 276
31 3300049587 Ga0501071_0170612 Ga0501071_0170612_674_1579 276
32 3300049742 Ga0501080_0039643 Ga0501080_0039643_1524_2429 276
33 3300049822 Ga0501035_0025296 Ga0501035_0025296_3147_4052 276
34 3300049823 Ga0501044_0089578 Ga0501044_0089578_873_1778 276
35 3300049823 Ga0501044_0140928 Ga0501044_0140928_16_921 276
36 3300053151 Ga0500604_0001094 Ga0500604_0001094_4912_5805 276
37 3300003781 Ga0055536_1001918 Ga0055536_10019189 281
38 3300003792 Ga0055540_1010943 Ga0055540_10109433 281
39 3300003794 Ga0055531_10005059 Ga0055531_100050597 281
40 3300025292 Ga0209676_1003420 Ga0209676_100342010 281
41 3300025298 Ga0209050_1003460 Ga0209050_10034604 281
42 3300025303 Ga0209051_1002893 Ga0209051_10028932 281
43 3300025304 Ga0209257_1001770 Ga0209257_100177017 281
44 3300053158 Ga0500627_0011486 Ga0500627_0011486_1151_2056 282
45 3300006946 Ga0079104_1014631 Ga0079104_10146311 284
46 3300022739 Ga0228711_1000013 Ga0228711_100001348 284
47 3300022740 Ga0228710_1000008 Ga0228710_100000881 284
48 3300027111 Ga0209281_1000134 Ga0209281_1000134143 284
49 3300027666 Ga0209282_1000029 Ga0209282_1000029111 284
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313 3300005548 Ga0070665_100033488 Ga0070665_1000334883 296
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361 3300049568 Ga0501031_0048560 Ga0501031_0048560_425_1330 297
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363 3300049569 Ga0501032_0052827 Ga0501032_0052827_1759_2664 297
364 3300049570 Ga0501033_0000277 Ga0501033_0000277_44648_45541 297
365 3300049570 Ga0501033_0002166 Ga0501033_0002166_1848_2753 297
366 3300049570 Ga0501033_0005369 Ga0501033_0005369_5326_6225 297
367 3300049570 Ga0501033_0011490 Ga0501033_0011490_473_1378 297
368 3300049570 Ga0501033_0055247 Ga0501033_0055247_449_1354 297
369 3300049571 Ga0501034_0001008 Ga0501034_0001008_33519_34412 297
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386 3300049583 Ga0501067_0082462 Ga0501067_0082462_38_943 297
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401 3300049590 Ga0501074_0006040 Ga0501074_0006040_2782_3681 297
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406 3300049742 Ga0501080_0377589 Ga0501080_0377589_58_1047 297
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413 3300049822 Ga0501035_0060081 Ga0501035_0060081_926_1831 297
414 3300049822 Ga0501035_0336117 Ga0501035_0336117_182_1087 297
415 3300049823 Ga0501044_0000031 Ga0501044_0000031_103745_104650 297
416 3300049823 Ga0501044_0003628 Ga0501044_0003628_11095_11994 297
417 3300049823 Ga0501044_0020426 Ga0501044_0020426_3465_4370 297
418 3300049823 Ga0501044_0036648 Ga0501044_0036648_4031_4939 297
419 3300049823 Ga0501044_0043033 Ga0501044_0043033_399_1304 297
420 3300049823 Ga0501044_0058301 Ga0501044_0058301_961_1866 297
421 3300049823 Ga0501044_0092358 Ga0501044_0092358_81_986 297
422 3300050489 nmdc:mga03683_45116_c1 nmdc:mga03683_45116_c1_268_1176 297
423 3300060353 Ga0501082_0009529 Ga0501082_0009529_1575_2480 297
424 3300060353 Ga0501082_0107217 Ga0501082_0107217_1141_2130 297
425 3300002739 JGI25158J39367_1003504 JGI25158J39367_10035042 299
426 3300005262 Ga0065165_1016200 Ga0065165_10162001 299
427 3300005548 Ga0070665_100052605 Ga0070665_1000526053 299
428 3300006946 Ga0079104_1000033 Ga0079104_1000033149 299
429 3300013249 Ga0171463_1001 Ga0171463_10011032 299
430 3300021327 Ga0214543_1000027 Ga0214543_100002743 299
431 3300025294 Ga0209025_1000037 Ga0209025_100003772 299
432 3300025297 Ga0209758_1000170 Ga0209758_100017063 299
433 3300027111 Ga0209281_1000043 Ga0209281_1000043284 299
434 3300028794 Ga0307515_10000112 Ga0307515_10000112146 299
435 3300031548 Ga0307408_100047565 Ga0307408_1000475652 299
436 3300037471 Ga0395905_0006166 Ga0395905_0006166_2423_3322 299
437 3300041413 Ga0439465_0101396 Ga0439465_0101396_13_912 299
438 3300042007 Ga0439449_0004892 Ga0439449_0004892_891_1790 299
439 3300042007 Ga0439449_0022561 Ga0439449_0022561_421_1320 299
440 3300042010 Ga0439452_032721 Ga0439452_032721_348_1247 299
441 3300042531 Ga0450918_008168 Ga0450918_008168_263_1162 299
442 3300046515 Ga0495620_0016241 Ga0495620_0016241_938_1837 299
443 3300046530 Ga0495654_0000392 Ga0495654_0000392_5798_6709 299
444 3300047318 Ga0495636_0119639 Ga0495636_0119639_254_1153 299
445 3300048919 Ga0496116_0099895 Ga0496116_0099895_18_917 299
446 3300048921 Ga0496118_0044731 Ga0496118_0044731_1474_2436 299
447 3300048924 Ga0496121_0000806 Ga0496121_0000806_5928_6827 299
448 3300048924 Ga0496121_0009177 Ga0496121_0009177_4000_4914 299
449 3300048925 Ga0496122_0000018 Ga0496122_0000018_103556_104464 299
450 3300048925 Ga0496122_0011288 Ga0496122_0011288_7586_8485 299
451 3300048925 Ga0496122_0119537 Ga0496122_0119537_771_1670 299
452 3300048925 Ga0496122_0141039 Ga0496122_0141039_512_1411 299
453 3300048926 Ga0496123_0000015 Ga0496123_0000015_103556_104464 299
454 3300048926 Ga0496123_0013918 Ga0496123_0013918_3128_4027 299
455 3300048927 Ga0496124_0021207 Ga0496124_0021207_2632_3546 299
456 3300048929 Ga0496126_0018308 Ga0496126_0018308_4780_5685 299
457 3300048929 Ga0496126_0046480 Ga0496126_0046480_2018_2959 299
458 3300049568 Ga0501031_0018175 Ga0501031_0018175_2756_3655 299
459 3300049569 Ga0501032_0021376 Ga0501032_0021376_876_1775 299
460 3300049579 Ga0501043_0031284 Ga0501043_0031284_1068_1967 299
461 3300049823 Ga0501044_0231183 Ga0501044_0231183_294_1193 299
462 3300050492 nmdc:mga0yw44_1063_c1 nmdc:mga0yw44_1063_c1_4455_5354 299
463 3300053111 Ga0500572_000904 Ga0500572_000904_2449_3348 299
464 3300053125 Ga0500618_000131 Ga0500618_000131_26040_26951 299
465 3300053125 Ga0500618_000603 Ga0500618_000603_15153_16052 299
466 3300053125 Ga0500618_007357 Ga0500618_007357_882_1781 299
467 3300053151 Ga0500604_0040897 Ga0500604_0040897_48_947 299
468 3300053153 Ga0500616_0000657 Ga0500616_0000657_14589_15488 299
469 3300053177 Ga0500636_0000022 Ga0500636_0000022_33922_34830 299
470 3300053177 Ga0500636_0003976 Ga0500636_0003976_6496_7395 299
471 3300053177 Ga0500636_0003979 Ga0500636_0003979_5891_6793 299

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00294

PfkB

pfkB family carbohydrate kinase

31

320

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
1rk2-assembly2.cif.gz_C e. coli ribokinase complexed with ribose and adp, solved in space group p212121 0.9471 2 297
4xda-assembly1.cif.gz_A vibrio cholerae o395 ribokinase complexed with ribose, adp and sodium ion. 0.9409 2 297
1rk2-assembly2.cif.gz_C e. coli ribokinase complexed with ribose and adp, solved in space group p212121 0.9348 2 297
6znx-assembly1.cif.gz_A ribokinase from thermus species 0.9315 1 297
4xda-assembly1.cif.gz_A vibrio cholerae o395 ribokinase complexed with ribose, adp and sodium ion. 0.9287 2 297
ID Description Score Start End Superfamily
af_Q9VK96_1_314_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9117 2 297 3.40.1190.20
af_O60116_1_317_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9032 2 298 3.40.1190.20
af_Q54UQ4_1_318_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9013 2 295 3.40.1190.20
af_Q9VK96_1_314_3.40.1190.20 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.9002 2 297 3.40.1190.20
4x8fD00 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Ribokinase 0.8978 2 297 3.40.1190.20
ID Description Score Start End GO Terms
AF-A0A530ZNN9-F1-model_v4 Ribokinase 0.9803 1 107 GO:0005829
GO:0006796
GO:0016301
AF-A0A4Q3IBP4-F1-model_v4 Ribokinase 0.9725 112 298 GO:0006796
GO:0016301
AF-A0A530ZNN9-F1-model_v4 Ribokinase 0.9714 1 107 GO:0005829
GO:0006796
GO:0016301
AF-A0A6P0WMR4-F1-model_v4 Ribokinase 0.9678 1 86 GO:0006796
GO:0016301
AF-A0A2D5SBW8-F1-model_v4 Carbohydrate kinase PfkB domain-containing protein 0.9562 215 297 GO:0005829
GO:0006796
GO:0016301

Feature Viewer

pLDDT pTM Quality
95.72 0.93 High
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Predicted Structure (AlphaFold2)

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