F431288

General Info

Members Datasets Scaffolds Average Seq Length
388 268 314 1276

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2939631187|2939633021
Length 1392
Sequence TVPLNPPLKIEFPPNLPVSERRAEIEEAMARHQVIIVCGETGSGKTTQLPKMALAMGRGKMNAKPGERGRLIGHTQPRRIAASSVAKRIAEELKTPLGEVVGYKVRFQDRLSQNASIKLMTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLKQILPRRPDLRVIVTSATIDADRFARHFESRNGPAPVLMVSGRTFPVEQRYRPYEENREYDLNNAIADAVDELWTGRPVGDILVFLPGEREIREAADHLRKHLSHHAGTRGAEVLPLFARLSQAEQDRVFDSHGAPRIVLATNVAETSLTVPGIRYVVDAGTARVKRYSYRSKVEQLLVEPVSQAAANQRAGRCGRVADGICIRLYDEKDFSGRPRFTDPEILRSSLAGVILRMKSLRLLGDGGRVEDFPFLESPSGRAIADGYQLLGELGAVNDAGELTHLGSELARLPLDPRIGRIIIEGRDRGALEEVMVIASALSVQDVRDRPLEAQAQADQAHAKFDDEKSEFSGYLRLWKWLHDARGGHAAGTRREMAAREAKAPKMPANVAVLPVAQRAALAMQAARQALQQTAQSAVPASKAGARIAQAADQGRAIDPSSHKLSNRQYESLLRQNFISVRRVREWRDIHTQLHTVVAEHKWKVNAQPAGYEALHKSLLAGLLGNIGCKLEEDAGGSSGEYLGARGIKFYRHPGAHLSKKPGRWIVCAELVETTRLFGRGIANIEPQWLEEVGGHLLKKQLLAPHWEKKALDVIALERATLYGLPVYTGRRVSFGKVDPHAARELFIREALVGGEWPDEWARRLPFLPANVKTIAKVEELEHKSRRQDVLVDDELIYAFYDQQIPQDICNGRDFESWWKEASQTKPDLLRLTREELMRHDAAGITTSAFPRVVRLGGVDCAASYLHEPGDPKDGLTVTVPLFVLNQVNEERAEWLVPGMLKDKIQALLKSLPQRPRSRFVPLPESAARLNEQLSSSDAFGNGSLVDALLKMVRDATSLQVARTDFKQDMLPMHLFMNFVVVDEHGRQLGTGRNLAALKAELGSQARGAFQALAALKVSTPDGTPSPASRGQSAQPGAGTQEAAARMRSAAKSPAGAPAAREASRSGATDEIVTSQRHTTWSFGELPELMEIRRKGQTLIGFPALVDGGDAVTIEVFDEPDVAASKHRGGLRRLVSLQIKDALKYLEKNIPDLQKMGVAFMSLGTPEELRQQIIDVALDRAFLQEPLPQDAQSFGRRVEEGRGRLTLIANEVARLAGVILTEYAAVARKLKDAKNATEAVADAQQQLQRLISKRFLQETPWTALQHFPRYLKAILLRMDKLRADPARDAQRMVDARAQEQRFWRLVAERKGVQDARLQELRWLLEELRVSFFAQELRTPQPVSAKRLEKVWGQVKG

Samples

Sample ID Description Type Environment
1 2513020051 Variovorax sp. CF313 Isolate Rhizosphere
2 2526164512 Azovibrio restrictus DSM 23866 Isolate Unclassified
3 2547132374 Acidovorax radicis N35 Isolate Unclassified
4 2547132512 Azospira oryzae 6a3 Isolate Unclassified
5 2574179768 Azoarcus communis DSM 12120 Isolate Unclassified
6 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
7 2599185214 Variovorax sp. NFACC26 Isolate Rhizoplane
8 2599185226 Variovorax sp. NFACC27 Isolate Rhizoplane
9 2599185227 Variovorax sp. NFACC28 Isolate Rhizoplane
10 2599185229 Variovorax sp. NFACC29 Isolate Endosphere
11 2643221544 Pelomonas sp. Root1444 Isolate Unclassified
12 2643221570 Acidovorax sp. Root568 Isolate Unclassified
13 2643221585 Pelomonas sp. Root662 Isolate Unclassified
14 2643221596 Acidovorax sp. Root70 Isolate Unclassified
15 2643221609 Acidovorax sp. Root217 Isolate Unclassified
16 2643221611 Acidovorax sp. Root219 Isolate Unclassified
17 2643221628 Variovorax sp. Root318D1 Isolate Unclassified
18 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
19 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
20 2643221652 Acidovorax sp. Root402 Isolate Unclassified
21 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
22 2643221656 Pelomonas sp. Root405 Isolate Unclassified
23 2643221658 Variovorax sp. Root411 Isolate Unclassified
24 2643221660 Methylibium sp. Root1272 Isolate Unclassified
25 2643221672 Variovorax sp. Root434 Isolate Unclassified
26 2643221683 Variovorax sp. Root473 Isolate Unclassified
27 2643221717 Acidovorax sp. Root267 Isolate Unclassified
28 2721755523 Delftia sp. HK171 Isolate Unclassified
29 2738541277 Variovorax sp. GV051 Isolate Unclassified
30 2738541307 Variovorax sp. GV008 Isolate Unclassified
31 2738541337 Pelomonas sp. BT06 Isolate Unclassified
32 2738543012 Acidovorax sp. CF301 Isolate Unclassified
33 2738543013 Variovorax sp. BT01 Isolate Unclassified
34 2738543019 Variovorax sp. GV040 Isolate Unclassified
35 2816332133 Acidovorax radicis 2721A Isolate Unclassified
36 2818991446 Variovorax sp. 1180 Isolate Unclassified
37 2831265667 Variovorax guangxiensis DSM 27352 Isolate Rhizosphere
38 2831864461 Roseateles noduli HZ7 Isolate Nodule
39 2838054893 Variovorax guangxiensis 34/80 Isolate Nodule
40 2839138175 Delftia acidovorans B15 Isolate Rhizosphere
41 2842677519 Variovorax sp. R-72495 Isolate Unclassified
42 2842718218 Acidovorax sp. R-73343 Isolate Unclassified
43 2842733646 Variovorax sp. R-72446 Isolate Unclassified
44 2842747753 Variovorax sp. R-72060 Isolate Unclassified
45 2881101125 Ramlibacter rhizophilus CCTCC AB2015357 Isolate Rhizosphere
46 2885192300 Variovorax sp. MHTC-1 Isolate Rhizosphere
47 2885198086 Variovorax sp. 679 Isolate Unclassified
48 2885211737 Variovorax sp. 553 Isolate Unclassified
49 2894023352 Diaphorobacter ruginosibacter DSM 27467 Isolate Nodule
50 2899924645 Variovorax sp. 369 Isolate Unclassified
51 2904449895 Variovorax sp. 1763 Isolate Rhizosphere
52 2904456579 Variovorax sp. 2002 Isolate Unclassified
53 2904479285 Comamonas sediminis 4487 Isolate Rhizosphere
54 2904541872 Variovorax sp. 1615 Isolate Rhizosphere
55 2919462493 Variovorax sp. 3319 Isolate Rhizosphere
56 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified
57 2928037797 Variovorax sp. 1126 Isolate Unclassified
58 2928044640 Variovorax sp. 1128 Isolate Unclassified
59 2928051484 Variovorax sp. 1133 Isolate Unclassified
60 2928064002 Variovorax sp. 1140 Isolate Rhizosphere
61 2928070936 Variovorax gossypii 1167 Isolate Unclassified
62 2928084124 Variovorax paradoxus 1218 Isolate Unclassified
63 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
64 2929160207 Variovorax sp. R-72349 Hybrid assembly Isolate Unclassified
65 2929520902 Variovorax beijingensis 502 Isolate Unclassified
66 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
67 2939631187 Ottowia thiooxydans 2709 Isolate Rhizosphere
68 2945909444 Variovorax sp. CRF3-Va-1 W1I1 Isolate Rhizosphere
69 2945945610 Variovorax paradoxus W1I18 Isolate Rhizosphere
70 2945972063 Variovorax paradoxus W2I8 Isolate Rhizosphere
71 2945984333 Variovorax sp. W2I14 Isolate Rhizosphere
72 2954767861 Variovorax sp. TBS-050B Isolate Rhizosphere
73 2974320154 Acidovorax wautersii SORGH_AS 335 Isolate Unclassified
74 2990710928 Acidovorax delafieldii SLBN-75 Isolate Rhizosphere
75 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
76 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
77 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
78 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
79 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
80 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
81 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
82 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
83 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
84 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
85 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
86 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
87 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
88 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
89 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
90 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
91 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
92 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
93 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
94 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
95 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
96 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
97 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
98 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
99 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
100 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
101 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
102 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
103 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
104 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
105 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
106 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
107 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
108 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
109 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
110 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
111 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
112 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
113 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
114 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
115 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
116 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
117 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
118 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
119 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
120 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
121 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
122 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
123 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
124 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
125 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
126 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
127 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
128 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
129 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
130 3300015683 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_F04 Metagenome Rhizosphere
131 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
132 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
133 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
134 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
135 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
136 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
137 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
138 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
139 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
140 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
141 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
142 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
143 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
144 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
145 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
146 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
147 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
148 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
149 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
150 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
151 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
152 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
153 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
154 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
155 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
156 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
157 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
158 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
159 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
160 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
161 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
162 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
163 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
164 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
165 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
166 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
167 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
168 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
169 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
170 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
171 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
172 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
173 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
174 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
175 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
176 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
177 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
178 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
179 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
180 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
181 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
182 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
183 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
184 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
185 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
186 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
187 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
188 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
189 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
190 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
191 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
192 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
193 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
194 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
195 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
196 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
197 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
198 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
199 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
200 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
201 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
202 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
203 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
204 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
205 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
206 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
207 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
208 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
209 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
210 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
211 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
212 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
213 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
214 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
215 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
216 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
217 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
218 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
219 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
220 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
221 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
222 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
223 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
224 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
225 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
226 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
227 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
228 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
229 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
230 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
231 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
232 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
233 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
234 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
235 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
236 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
237 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
238 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
239 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
240 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
241 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
242 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
243 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
244 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
245 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
246 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
247 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
248 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
249 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
250 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
251 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
252 3300049662 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F2_A_2_control Metagenome Rhizosphere
253 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
254 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
255 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
256 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
257 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
258 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
259 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
260 3300053110 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 endosphere Metagenome Endosphere
261 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
262 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
263 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
264 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
265 3300053141 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 endosphere Metagenome Endosphere
266 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
267 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
268 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 80.67
Metatranscriptomes 0.26
Isolates 19.07

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 27.06
Nodule 1.8
Rhizoplane 1.8
Rhizosphere 46.91
Stem 0
Stem Tuber 0
Unclassified 22.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25155J39150_1000095 3300002704 Bacteria 49917
2 JGI25156J39149_1000025 3300002705 Bacteria 136287
3 JGI25154J39366_1000045 3300002738 Bacteria 136302
4 JGI25154J39366_1001000 3300002738 Bacteria 11407
5 JGI25157J39369_1000015 3300002741 Bacteria 194042
6 JGI25157J39369_1000034 3300002741 Bacteria 136301
7 JGI25159J45721_1001410 3300002987 Bacteria 9985
8 JGI25159J45721_1003370 3300002987 Bacteria 5677
9 JGI25151J46595_10001802 3300003187 Bacteria 13838
10 rootL2_10002558 3300003322 Bacteria 49030
11 JGI25160J50197_1000321 3300003354 Bacteria 33340
12 JGI25161J50226_1000070 3300003374 Bacteria 89592
13 Ga0006562J51391_1011567 3300003578 Bacteria 6580
14 Ga0055539_1000344 3300003752 Bacteria 20948
15 Ga0055533_1000010 3300003756 Bacteria 491196
16 Ga0055525_1000026 3300003759 Bacteria 345798
17 Ga0055535_1000334 3300003761 Bacteria 47259
18 Ga0055535_1000705 3300003761 Bacteria 25657
19 Ga0055542_1000039 3300003762 Bacteria 215126
20 Ga0055529_1000641 3300003763 Bacteria 25646
21 Ga0055537_1000296 3300003773 Bacteria 35117
22 Ga0055536_1005103 3300003781 Bacteria 6506
23 Ga0055534_1000092 3300003784 Bacteria 70082
24 Ga0055528_1000190 3300003790 Bacteria 52365
25 Ga0055528_1002109 3300003790 Bacteria 11000
26 Ga0055530_10001543 3300003791 Bacteria 16563
27 Ga0055540_1001720 3300003792 Bacteria 12596
28 Ga0055540_1001852 3300003792 Bacteria 11917
29 Ga0055540_1003595 3300003792 Bacteria 7403
30 Ga0055540_1005546 3300003792 Bacteria 5272
31 Ga0055531_10000044 3300003794 Bacteria 133446
32 Ga0055531_10000280 3300003794 Bacteria 52101
33 Ga0055531_10004224 3300003794 Bacteria 8839
34 Ga0055543_1000368 3300004625 Bacteria 29830
35 Ga0070674_100009045 3300005356 Bacteria 5953
36 Ga0070663_100002916 3300005455 Bacteria 9729
37 Ga0068867_100015341 3300005459 Bacteria 5432
38 Ga0070706_100000751 3300005467 Bacteria 36305
39 Ga0070672_100025003 3300005543 Bacteria 4422
40 Ga0068855_100010499 3300005563 Bacteria 11171
41 Ga0068855_100016007 3300005563 Bacteria 9021
42 Ga0068856_100009536 3300005614 Bacteria 9432
43 Ga0068859_100000862 3300005617 Bacteria 30894
44 Ga0068864_100009672 3300005618 Bacteria 7953
45 Ga0068861_100004352 3300005719 Bacteria 9501
46 Ga0068860_100008916 3300005843 Bacteria 9993
47 Ga0068860_100013717 3300005843 Bacteria 7946
48 Ga0068862_100000379 3300005844 Bacteria 48327
49 Ga0075366_10001164 3300006195 Bacteria 13016
50 Ga0075366_10005778 3300006195 Bacteria 6721
51 Ga0075370_10000410 3300006353 Bacteria 15848
52 Ga0075370_10005753 3300006353 Bacteria 6192
53 Ga0068865_100005652 3300006881 Bacteria 7591
54 Ga0097620_100000862 3300006931 Bacteria 30894
55 Ga0099823_1001202 3300006944 Bacteria 20674
56 Ga0079104_1000026 3300006946 Bacteria 216566
57 Ga0105244_10003103 3300009036 Bacteria 12152
58 Ga0105240_10000359 3300009093 Bacteria 85874
59 Ga0105243_10002191 3300009148 Bacteria 16468
60 Ga0105243_10021147 3300009148 Bacteria 4938
61 Ga0105248_10011889 3300009177 Bacteria 9603
62 Ga0105238_10000737 3300009551 Bacteria 34144
63 Ga0105239_10013871 3300010375 Bacteria 8943
64 Ga0105239_10020577 3300010375 Bacteria 7280
65 Ga0157369_10013008 3300013105 Bacteria 9427
66 Ga0157378_10000508 3300013297 Bacteria 36994
67 Ga0157375_10000114 3300013308 Bacteria 78070
68 Ga0163163_10000100 3300014325 Bacteria 91212
69 Ga0182008_10001208 3300014497 Bacteria 17812
70 Ga0182008_10005129 3300014497 Bacteria 7518
71 Ga0157376_10019479 3300014969 Bacteria 5231
72 Ga0182006_1006775 3300015261 Bacteria 5289
73 Ga0183362_10001 3300015683 Bacteria 2046624
74 Ga0163161_10000958 3300017792 Bacteria 22166
75 Ga0213872_10000003 3300021361 Bacteria 366948
76 Ga0213872_10000004 3300021361 Bacteria 306230
77 Ga0213872_10000016 3300021361 Bacteria 180524
78 Ga0209435_100001 3300025206 Bacteria 1424171
79 Ga0209674_100003 3300025226 Bacteria 2196646
80 Ga0209563_100005 3300025230 Bacteria 1774893
81 Ga0209563_100010 3300025230 Bacteria 1337457
82 Ga0207427_100666 3300025231 Bacteria 16481
83 Ga0209258_100060 3300025242 Bacteria 319881
84 Ga0209258_100099 3300025242 Bacteria 214924
85 Ga0209258_101033 3300025242 Bacteria 12389
86 Ga0207425_1000239 3300025245 Bacteria 42732
87 Ga0209646_1000001 3300025246 Bacteria 3092932
88 Ga0209646_1000177 3300025246 Bacteria 81778
89 Ga0209026_1000003 3300025250 Bacteria 1060571
90 Ga0209026_1000021 3300025250 Bacteria 375165
91 Ga0209677_100106 3300025253 Bacteria 89125
92 Ga0209677_100231 3300025253 Bacteria 39556
93 Ga0209148_1000103 3300025254 Bacteria 215356
94 Ga0209759_1000001 3300025256 Bacteria 2799452
95 Ga0209759_1000025 3300025256 Bacteria 317082
96 Ga0209129_1000007 3300025258 Bacteria 771325
97 Ga0209233_1000704 3300025261 Bacteria 15656
98 Ga0209565_1000073 3300025263 Bacteria 164695
99 Ga0209565_1000137 3300025263 Bacteria 102172
100 Ga0209455_1000209 3300025272 Bacteria 83106
101 Ga0209673_1000127 3300025273 Bacteria 164695
102 Ga0209673_1000128 3300025273 Bacteria 164482
103 Ga0209673_1000269 3300025273 Bacteria 97944
104 Ga0209130_1000076 3300025284 Bacteria 170259
105 Ga0209130_1000166 3300025284 Bacteria 96473
106 Ga0209130_1000535 3300025284 Bacteria 38259
107 Ga0209130_1000547 3300025284 Bacteria 37583
108 Ga0209130_1001846 3300025284 Bacteria 12174
109 Ga0209675_1000029 3300025291 Bacteria 281053
110 Ga0209675_1000114 3300025291 Bacteria 112118
111 Ga0209675_1001611 3300025291 Bacteria 12722
112 Ga0209676_1000122 3300025292 Bacteria 195510
113 Ga0209676_1000669 3300025292 Bacteria 48834
114 Ga0209676_1000762 3300025292 Bacteria 43299
115 Ga0209025_1000073 3300025294 Bacteria 282133
116 Ga0209025_1000248 3300025294 Bacteria 126818
117 Ga0209025_1000491 3300025294 Bacteria 75913
118 Ga0209025_1004623 3300025294 Bacteria 11772
119 Ga0209025_1007383 3300025294 Bacteria 8215
120 Ga0209564_1000073 3300025295 Bacteria 288080
121 Ga0209564_1000099 3300025295 Bacteria 225256
122 Ga0209758_1000025 3300025297 Bacteria 586687
123 Ga0209758_1006216 3300025297 Bacteria 8716
124 Ga0209050_1000433 3300025298 Bacteria 76499
125 Ga0209050_1000661 3300025298 Bacteria 53102
126 Ga0209050_1002220 3300025298 Bacteria 17423
127 Ga0209256_1000050 3300025299 Bacteria 308622
128 Ga0209256_1000063 3300025299 Bacteria 252716
129 Ga0207426_1000001 3300025302 Bacteria 1341301
130 Ga0207426_1000025 3300025302 Bacteria 532921
131 Ga0207426_1000028 3300025302 Bacteria 483955
132 Ga0209051_1000002 3300025303 Bacteria 1631846
133 Ga0209051_1000406 3300025303 Bacteria 59626
134 Ga0209051_1000608 3300025303 Bacteria 41561
135 Ga0209051_1000771 3300025303 Bacteria 33997
136 Ga0209051_1001233 3300025303 Bacteria 22980
137 Ga0209257_1000002 3300025304 Bacteria 1767052
138 Ga0209257_1000012 3300025304 Bacteria 1111138
139 Ga0209257_1000094 3300025304 Bacteria 262243
140 Ga0209257_1000763 3300025304 Bacteria 48124
141 Ga0209257_1007247 3300025304 Bacteria 6780
142 Ga0207697_10005625 3300025315 Bacteria 5793
143 Ga0207655_1001746 3300025728 Bacteria 19071
144 Ga0207647_10007943 3300025904 Bacteria 7629
145 Ga0207684_10007960 3300025910 Bacteria 9473
146 Ga0207695_10000014 3300025913 Bacteria 812599
147 Ga0207695_10000359 3300025913 Bacteria 104462
148 Ga0207695_10011763 3300025913 Bacteria 10572
149 Ga0207671_10000846 3300025914 Bacteria 38854
150 Ga0207657_10003537 3300025919 Bacteria 16689
151 Ga0207694_10000753 3300025924 Bacteria 29083
152 Ga0207650_10019844 3300025925 Bacteria 4730
153 Ga0207644_10021860 3300025931 Bacteria 4362
154 Ga0207706_10000995 3300025933 Bacteria 28847
155 Ga0207709_10000079 3300025935 Bacteria 166220
156 Ga0207709_10000468 3300025935 Bacteria 37248
157 Ga0207669_10002726 3300025937 Bacteria 7565
158 Ga0207691_10004476 3300025940 Bacteria 13536
159 Ga0207691_10008513 3300025940 Bacteria 9854
160 Ga0207711_10008488 3300025941 Bacteria 8595
161 Ga0207667_10004814 3300025949 Bacteria 16510
162 Ga0207639_10004345 3300026041 Bacteria 9558
163 Ga0207678_10004266 3300026067 Bacteria 12821
164 Ga0207702_10007927 3300026078 Bacteria 9000
165 Ga0207641_10012436 3300026088 Bacteria 6979
166 Ga0207648_10000712 3300026089 Bacteria 37330
167 Ga0207698_10010251 3300026142 Bacteria 6009
168 Ga0209281_1000067 3300027111 Bacteria 284517
169 Ga0209282_1000109 3300027666 Bacteria 53813
170 Ga0209966_1000052 3300027695 Bacteria 50827
171 Ga0268265_10000909 3300028380 Bacteria 27388
172 Ga0268264_10002571 3300028381 Bacteria 15904
173 Ga0265336_10000054 3300028666 Bacteria 112835
174 Ga0307515_10000022 3300028794 Bacteria 404064
175 Ga0307515_10000628 3300028794 Bacteria 82043
176 Ga0307515_10001399 3300028794 Bacteria 54623
177 Ga0307515_10004779 3300028794 Bacteria 27729
178 Ga0307515_10005049 3300028794 Bacteria 26858
179 Ga0307515_10005828 3300028794 Bacteria 24869
180 Ga0307515_10016245 3300028794 Bacteria 13643
181 Ga0265324_10000571 3300029957 Bacteria 25222
182 Ga0316183_1033424 3300030742 Bacteria 13911
183 Ga0265332_10000058 3300031238 Bacteria 102565
184 Ga0265332_10000128 3300031238 Bacteria 63543
185 Ga0265332_10002487 3300031238 Bacteria 9379
186 Ga0265327_10000043 3300031251 Bacteria 285108
187 Ga0265327_10000058 3300031251 Bacteria 237043
188 Ga0265327_10000814 3300031251 Bacteria 47176
189 Ga0265316_10000168 3300031344 Bacteria 73962
190 Ga0265316_10004580 3300031344 Bacteria 13720
191 Ga0307513_10000010 3300031456 Bacteria 360812
192 Ga0307513_10000014 3300031456 Bacteria 303157
193 Ga0307513_10026717 3300031456 Bacteria 6647
194 Ga0307509_10000054 3300031507 Bacteria 163301
195 Ga0307408_100000008 3300031548 Bacteria 456355
196 Ga0307408_100000177 3300031548 Bacteria 71449
197 Ga0307408_100010920 3300031548 Bacteria 5994
198 Ga0307508_10000056 3300031616 Bacteria 126640
199 Ga0307514_10002080 3300031649 Bacteria 21613
200 Ga0307514_10006798 3300031649 Bacteria 9900
201 Ga0265314_10007625 3300031711 Bacteria 9366
202 Ga0307516_10006000 3300031730 Bacteria 14358
203 Ga0307406_10000349 3300031901 Bacteria 26890
204 Ga0307406_10000947 3300031901 Bacteria 16247
205 Ga0307411_10000071 3300032005 Bacteria 30969
206 Ga0373939_0000161 3300035114 Bacteria 18644
207 Ga0373931_0005819 3300035691 Bacteria 5735
208 Ga0395899_0002226 3300037312 Bacteria 15895
209 Ga0395899_0003234 3300037312 Bacteria 12924
210 Ga0395900_0000046 3300037418 Bacteria 230114
211 Ga0395898_0000965 3300037466 Bacteria 45672
212 Ga0395898_0008122 3300037466 Bacteria 11110
213 Ga0395905_0000339 3300037471 Bacteria 66527
214 Ga0395905_0000395 3300037471 Bacteria 61787
215 Ga0395905_0000869 3300037471 Bacteria 39396
216 Ga0395905_0001298 3300037471 Bacteria 30735
217 Ga0395905_0008416 3300037471 Bacteria 10173
218 Ga0395905_0009002 3300037471 Bacteria 9797
219 Ga0395905_0015989 3300037471 Bacteria 7132
220 Ga0436361_0297398 3300039447 Bacteria 32908
221 Ga0436361_0376061 3300039447 Bacteria 200571
222 Ga0436361_0609661 3300039447 Bacteria 30960
223 Ga0439436_0002414 3300041404 Bacteria 5605
224 Ga0439465_0000164 3300041413 Bacteria 16839
225 Ga0439433_0000840 3300041999 Bacteria 6086
226 Ga0439449_0002505 3300042007 Bacteria 7177
227 Ga0439452_002010 3300042010 Bacteria 7772
228 Ga0451577_0000412 3300042876 Bacteria 77714
229 Ga0451577_0000603 3300042876 Bacteria 57862
230 Ga0451577_0003122 3300042876 Bacteria 18693
231 Ga0451577_0003311 3300042876 Bacteria 18111
232 Ga0466969_0000140 3300044656 Bacteria 39075
233 Ga0466966_0010860 3300044684 Bacteria 6049
234 Ga0453684_0000014 3300044712 Bacteria 993311
235 Ga0453684_0000369 3300044712 Bacteria 184784
236 Ga0453684_0000401 3300044712 Bacteria 178536
237 Ga0453684_0000475 3300044712 Bacteria 159174
238 Ga0453684_0001602 3300044712 Bacteria 62203
239 Ga0453684_0001609 3300044712 Bacteria 62038
240 Ga0453684_0005149 3300044712 Bacteria 26304
241 Ga0453684_0008774 3300044712 Bacteria 17947
242 Ga0453684_0025877 3300044712 Bacteria 8500
243 Ga0466959_0022380 3300045049 Bacteria 4672
244 Ga0451576_0000168 3300045051 Bacteria 165624
245 Ga0451576_0000313 3300045051 Bacteria 117520
246 Ga0451576_0000781 3300045051 Bacteria 62611
247 Ga0451576_0001056 3300045051 Bacteria 50737
248 Ga0451576_0006639 3300045051 Bacteria 14133
249 Ga0451576_0009563 3300045051 Bacteria 11226
250 Ga0451576_0021563 3300045051 Bacteria 7003
251 Ga0451576_0022566 3300045051 Bacteria 6823
252 Ga0451576_0026408 3300045051 Bacteria 6246
253 Ga0495590_0000946 3300046457 Bacteria 12855
254 Ga0495606_0001899 3300046507 Bacteria 26072
255 Ga0495616_0001248 3300046513 Bacteria 17887
256 Ga0495631_0000829 3300046518 Bacteria 19666
257 Ga0495656_0002719 3300046615 Bacteria 5906
258 Ga0495625_0000396 3300046660 Bacteria 66627
259 Ga0495625_0004103 3300046660 Bacteria 13896
260 Ga0495671_0004690 3300046692 Bacteria 8089
261 Ga0495649_0001062 3300046694 Bacteria 21480
262 Ga0495676_0001397 3300047321 Bacteria 20781
263 Ga0495686_0010577 3300047472 Bacteria 6555
264 Ga0495593_0001597 3300047673 Bacteria 13391
265 Ga0495614_0000266 3300048089 Bacteria 20351
266 Ga0496102_0011933 3300048905 Bacteria 7503
267 Ga0496104_0000012 3300048907 Bacteria 438011
268 Ga0496105_0000011 3300048908 Bacteria 302186
269 Ga0496115_0000063 3300048918 Bacteria 100073
270 Ga0496117_0003312 3300048920 Bacteria 18824
271 Ga0496117_0006382 3300048920 Bacteria 11970
272 Ga0496118_0000101 3300048921 Bacteria 159577
273 Ga0496118_0000264 3300048921 Bacteria 91882
274 Ga0496121_0004845 3300048924 Bacteria 17704
275 Ga0496121_0018367 3300048924 Bacteria 7056
276 Ga0496122_0000531 3300048925 Bacteria 79144
277 Ga0496123_0000108 3300048926 Bacteria 166102
278 Ga0496124_0000086 3300048927 Bacteria 202844
279 Ga0496126_0001050 3300048929 Bacteria 46705
280 Ga0501031_0001562 3300049568 Bacteria 14256
281 Ga0501032_0001283 3300049569 Bacteria 20140
282 Ga0501033_0007447 3300049570 Bacteria 8525
283 Ga0501034_0007387 3300049571 Bacteria 11703
284 Ga0501034_0007520 3300049571 Bacteria 11590
285 Ga0501038_0007308 3300049574 Bacteria 10191
286 Ga0501043_0000010 3300049579 Bacteria 206374
287 Ga0501043_0001498 3300049579 Bacteria 20393
288 Ga0501046_0000261 3300049580 Bacteria 53675
289 Ga0501046_0000961 3300049580 Bacteria 28225
290 Ga0501047_0000026 3300049581 Bacteria 225296
291 Ga0501047_0002088 3300049581 Bacteria 19133
292 Ga0501047_0002712 3300049581 Bacteria 16850
293 Ga0501222_000084 3300049662 Bacteria 26262
294 Ga0501080_0006487 3300049742 Bacteria 10507
295 Ga0501080_0013115 3300049742 Bacteria 7613
296 Ga0501035_0003821 3300049822 Bacteria 14354
297 Ga0501044_0003635 3300049823 Bacteria 17358
298 nmdc:mga07m45_1657_c1 3300050496 Bacteria 10246
299 nmdc:mga07m45_6869_c1 3300050496 Bacteria 5788
300 nmdc:mga07m45_9323_c1 3300050496 Bacteria 5087
301 Ga0500610_0000653 3300053079 Bacteria 10673
302 Ga0500610_0001067 3300053079 Bacteria 9000
303 Ga0500635_0000101 3300053080 Bacteria 51182
304 Ga0500651_0000063 3300053093 Bacteria 70772
305 Ga0500571_000022 3300053110 Bacteria 56973
306 Ga0500593_000128 3300053117 Bacteria 29944
307 Ga0500607_004896 3300053121 Bacteria 8957
308 Ga0500658_0000439 3300053134 Bacteria 17876
309 Ga0500658_0000768 3300053134 Bacteria 13205
310 Ga0500559_0000122 3300053136 Bacteria 60264
311 Ga0500574_000081 3300053141 Bacteria 10819
312 Ga0500622_0000054 3300053156 Bacteria 144175
313 Ga0500636_0000050 3300053177 Bacteria 56422
314 Ga0500645_000059 3300053730 Bacteria 91141

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300041999 Ga0439433_0000840 Ga0439433_0000840_2764_6060 1065
2 3300010375 Ga0105239_10013871 Ga0105239_100138713 1123
3 3300049571 Ga0501034_0007520 Ga0501034_0007520_7568_11428 1130
4 3300049581 Ga0501047_0002088 Ga0501047_0002088_13444_17304 1130
5 3300049742 Ga0501080_0006487 Ga0501080_0006487_6485_10345 1130
6 3300045049 Ga0466959_0022380 Ga0466959_0022380_1181_4654 1133
7 3300026041 Ga0207639_10004345 Ga0207639_100043455 1141
8 3300013308 Ga0157375_10000114 Ga0157375_1000011412 1142
9 3300014325 Ga0163163_10000100 Ga0163163_1000010046 1143
10 3300013297 Ga0157378_10000508 Ga0157378_1000050813 1145
11 3300010375 Ga0105239_10020577 Ga0105239_100205775 1146
12 3300014969 Ga0157376_10019479 Ga0157376_100194792 1148
13 3300049568 Ga0501031_0001562 Ga0501031_0001562_2043_6134 1149
14 3300049569 Ga0501032_0001283 Ga0501032_0001283_3506_7597 1149
15 3300049570 Ga0501033_0007447 Ga0501033_0007447_3377_7468 1149
16 3300049571 Ga0501034_0007387 Ga0501034_0007387_2648_6739 1149
17 3300049574 Ga0501038_0007308 Ga0501038_0007308_3143_7234 1149
18 3300049579 Ga0501043_0001498 Ga0501043_0001498_1974_6065 1149
19 3300049580 Ga0501046_0000961 Ga0501046_0000961_12576_16667 1149
20 3300049581 Ga0501047_0002712 Ga0501047_0002712_3076_7167 1149
21 3300049822 Ga0501035_0003821 Ga0501035_0003821_1067_5158 1149
22 3300049823 Ga0501044_0003635 Ga0501044_0003635_3456_7547 1149
23 3300003322 rootL2_10002558 rootL2_1000255842 1150
24 3300049742 Ga0501080_0013115 Ga0501080_0013115_2429_6274 1152
25 3300025904 Ga0207647_10007943 Ga0207647_100079433 1160
26 3300042876 Ga0451577_0000603 Ga0451577_0000603_46149_49742 1161
27 3300044712 Ga0453684_0000014 Ga0453684_0000014_704978_708571 1161
28 3300044712 Ga0453684_0005149 Ga0453684_0005149_22670_26263 1161
29 3300045051 Ga0451576_0000313 Ga0451576_0000313_55252_58845 1161
30 3300005843 Ga0068860_100013717 Ga0068860_1000137173 1162
31 3300028381 Ga0268264_10002571 Ga0268264_100025718 1162
32 3300009093 Ga0105240_10000359 Ga0105240_1000035911 1163
33 3300009551 Ga0105238_10000737 Ga0105238_1000073713 1163
34 3300025261 Ga0209233_1000704 Ga0209233_10007049 1163
35 3300025913 Ga0207695_10000014 Ga0207695_10000014464 1163
36 3300025924 Ga0207694_10000753 Ga0207694_1000075312 1163
37 3300025919 Ga0207657_10003537 Ga0207657_100035377 1165
38 3300048907 Ga0496104_0000012 Ga0496104_0000012_250843_254991 1166
39 3300048908 Ga0496105_0000011 Ga0496105_0000011_183024_187172 1166
40 3300048920 Ga0496117_0003312 Ga0496117_0003312_5817_10058 1169
41 3300048921 Ga0496118_0000101 Ga0496118_0000101_104843_109084 1169
42 3300005617 Ga0068859_100000862 Ga0068859_1000008628 1171
43 3300005844 Ga0068862_100000379 Ga0068862_10000037945 1171
44 3300006931 Ga0097620_100000862 Ga0097620_10000086212 1171
45 3300028380 Ga0268265_10000909 Ga0268265_1000090911 1171
46 3300005614 Ga0068856_100009536 Ga0068856_1000095362 1172
47 3300005618 Ga0068864_100009672 Ga0068864_1000096723 1172
48 3300005843 Ga0068860_100008916 Ga0068860_1000089163 1172
49 3300026088 Ga0207641_10012436 Ga0207641_100124363 1172
50 3300005543 Ga0070672_100025003 Ga0070672_1000250031 1176
51 3300048918 Ga0496115_0000063 Ga0496115_0000063_36097_40008 1176
52 3300048929 Ga0496126_0001050 Ga0496126_0001050_34248_38159 1176
53 3300048920 Ga0496117_0006382 Ga0496117_0006382_255_4373 1177
54 3300048921 Ga0496118_0000264 Ga0496118_0000264_7104_11222 1177
55 3300025940 Ga0207691_10008513 Ga0207691_100085136 1178
56 3300025913 Ga0207695_10000359 Ga0207695_1000035955 1183
57 3300025914 Ga0207671_10000846 Ga0207671_100008463 1183
58 3300026078 Ga0207702_10007927 Ga0207702_100079274 1183
59 3300026142 Ga0207698_10010251 Ga0207698_100102513 1183
60 3300003759 Ga0055525_1000026 Ga0055525_1000026280 1184
61 3300025230 Ga0209563_100005 Ga0209563_1000051313 1184
62 3300049662 Ga0501222_000084 Ga0501222_000084_45_3662 1185
63 3300025935 Ga0207709_10000079 Ga0207709_1000007973 1187
64 3300044712 Ga0453684_0001602 Ga0453684_0001602_56124_59915 1191
65 3300028794 Ga0307515_10000022 Ga0307515_10000022305 1194
66 3300046457 Ga0495590_0000946 Ga0495590_0000946_4028_8038 1195
67 3300045051 Ga0451576_0021563 Ga0451576_0021563_2727_6500 1196
68 3300006946 Ga0079104_1000026 Ga0079104_1000026171 1197
69 3300027111 Ga0209281_1000067 Ga0209281_1000067229 1197
70 3300028794 Ga0307515_10005828 Ga0307515_1000582813 1197
71 3300028794 Ga0307515_10005049 Ga0307515_1000504919 1201
72 3300037471 Ga0395905_0015989 Ga0395905_0015989_64_4071 1201
73 3300046660 Ga0495625_0004103 Ga0495625_0004103_6105_9941 1202
74 3300037471 Ga0395905_0009002 Ga0395905_0009002_4127_7900 1204
75 3300006944 Ga0099823_1001202 Ga0099823_10012027 1205
76 3300031238 Ga0265332_10000058 Ga0265332_1000005834 1206
77 3300031238 Ga0265332_10002487 Ga0265332_100024873 1206
78 3300045051 Ga0451576_0026408 Ga0451576_0026408_1974_5735 1210
79 3300031507 Ga0307509_10000054 Ga0307509_10000054113 1211
80 3300003794 Ga0055531_10000044 Ga0055531_1000004413 1212
81 3300025304 Ga0209257_1000094 Ga0209257_1000094108 1212
82 3300003761 Ga0055535_1000334 Ga0055535_100033419 1214
83 3300003762 Ga0055542_1000039 Ga0055542_1000039114 1214
84 3300009148 Ga0105243_10002191 Ga0105243_100021915 1214
85 3300021361 Ga0213872_10000016 Ga0213872_1000001692 1214
86 3300025242 Ga0209258_100099 Ga0209258_10009999 1214
87 3300025254 Ga0209148_1000103 Ga0209148_100010399 1214
88 3300039447 Ga0436361_0376061 Ga0436361_0376061_102622_106377 1214
89 3300044712 Ga0453684_0000401 Ga0453684_0000401_18446_22219 1214
90 3300045051 Ga0451576_0006639 Ga0451576_0006639_1594_5367 1214
91 3300025231 Ga0207427_100666 Ga0207427_1006668 1216
92 3300044712 Ga0453684_0000369 Ga0453684_0000369_99845_103732 1216
93 3300045051 Ga0451576_0000168 Ga0451576_0000168_60469_64203 1217
94 iso_pu_bacteria 2643221585 2643936140 1218
95 iso_pu_bacteria 2643221656 2644316785 1218
96 3300005563 Ga0068855_100010499 Ga0068855_1000104993 1219
97 3300025949 Ga0207667_10004814 Ga0207667_100048142 1219
98 3300047472 Ga0495686_0010577 Ga0495686_0010577_1166_5077 1219
99 3300048925 Ga0496122_0000531 Ga0496122_0000531_71845_75843 1219
100 3300048926 Ga0496123_0000108 Ga0496123_0000108_139628_143626 1219
101 iso_pu_bacteria 2526164512 2526211293 1220
102 3300031730 Ga0307516_10006000 Ga0307516_100060006 1221
103 3300017792 Ga0163161_10000958 Ga0163161_100009587 1222
104 3300025253 Ga0209677_100231 Ga0209677_1002316 1222
105 iso_pu_bacteria 2547132512 2548847026 1222
106 iso_pu_bacteria 2643221544 2643742611 1222
107 3300025937 Ga0207669_10002726 Ga0207669_100027261 1223
108 3300031344 Ga0265316_10004580 Ga0265316_1000458013 1223
109 3300044712 Ga0453684_0001609 Ga0453684_0001609_51849_55817 1223
110 3300044712 Ga0453684_0008774 Ga0453684_0008774_12602_16594 1223
111 3300045051 Ga0451576_0001056 Ga0451576_0001056_35530_39552 1223
112 3300045051 Ga0451576_0022566 Ga0451576_0022566_1248_5204 1223
113 3300003752 Ga0055539_1000344 Ga0055539_100034413 1224
114 3300003756 Ga0055533_1000010 Ga0055533_100001052 1224
115 3300003781 Ga0055536_1005103 Ga0055536_10051032 1224
116 3300003792 Ga0055540_1001852 Ga0055540_100185210 1224
117 3300025226 Ga0209674_100003 Ga0209674_1000031386 1224
118 3300025230 Ga0209563_100010 Ga0209563_1000101113 1224
119 3300025253 Ga0209677_100106 Ga0209677_1001066 1224
120 3300025292 Ga0209676_1000762 Ga0209676_100076230 1224
121 3300025303 Ga0209051_1000608 Ga0209051_100060828 1224
122 3300031251 Ga0265327_10000043 Ga0265327_10000043152 1224
123 3300037418 Ga0395900_0000046 Ga0395900_0000046_92099_96058 1225
124 3300003761 Ga0055535_1000705 Ga0055535_100070518 1226
125 3300003763 Ga0055529_1000641 Ga0055529_10006411 1226
126 3300025242 Ga0209258_100060 Ga0209258_100060259 1226
127 3300025272 Ga0209455_1000209 Ga0209455_100020923 1226
128 3300032005 Ga0307411_10000071 Ga0307411_1000007117 1226
129 3300037471 Ga0395905_0000869 Ga0395905_0000869_20742_24488 1226
130 3300002738 JGI25154J39366_1001000 JGI25154J39366_10010006 1227
131 3300002741 JGI25157J39369_1000015 JGI25157J39369_100001591 1227
132 3300025246 Ga0209646_1000177 Ga0209646_100017717 1227
133 3300025250 Ga0209026_1000021 Ga0209026_100002192 1227
134 3300025256 Ga0209759_1000025 Ga0209759_100002592 1227
135 3300053177 Ga0500636_0000050 Ga0500636_0000050_15720_19553 1227
136 3300005467 Ga0070706_100000751 Ga0070706_10000075125 1230
137 3300025910 Ga0207684_10007960 Ga0207684_100079604 1230
138 3300053136 Ga0500559_0000122 Ga0500559_0000122_37016_40912 1230
139 3300025294 Ga0209025_1000073 Ga0209025_100007319 1231
140 3300035691 Ga0373931_0005819 Ga0373931_0005819_1077_5081 1231
141 3300053117 Ga0500593_000128 Ga0500593_000128_4134_8009 1231
142 3300046507 Ga0495606_0001899 Ga0495606_0001899_22145_26047 1232
143 3300046694 Ga0495649_0001062 Ga0495649_0001062_7107_11009 1232
144 3300025913 Ga0207695_10011763 Ga0207695_100117634 1233
145 3300025933 Ga0207706_10000995 Ga0207706_1000099517 1233
146 3300048924 Ga0496121_0004845 Ga0496121_0004845_458_4330 1233
147 3300053156 Ga0500622_0000054 Ga0500622_0000054_62384_66337 1233
148 3300046615 Ga0495656_0002719 Ga0495656_0002719_720_4508 1234
149 3300025242 Ga0209258_101033 Ga0209258_1010335 1236
150 3300005356 Ga0070674_100009045 Ga0070674_1000090453 1237
151 3300005459 Ga0068867_100015341 Ga0068867_1000153411 1237
152 3300025315 Ga0207697_10005625 Ga0207697_100056253 1237
153 3300025925 Ga0207650_10019844 Ga0207650_100198442 1237
154 3300025931 Ga0207644_10021860 Ga0207644_100218601 1237
155 3300025940 Ga0207691_10004476 Ga0207691_100044763 1237
156 3300028666 Ga0265336_10000054 Ga0265336_1000005446 1237
157 3300028794 Ga0307515_10004779 Ga0307515_1000477922 1237
158 3300029957 Ga0265324_10000571 Ga0265324_1000057112 1237
159 3300005719 Ga0068861_100004352 Ga0068861_1000043525 1238
160 3300006881 Ga0068865_100005652 Ga0068865_1000056525 1238
161 3300021361 Ga0213872_10000004 Ga0213872_1000000412 1238
162 3300026089 Ga0207648_10000712 Ga0207648_1000071232 1238
163 3300039447 Ga0436361_0609661 Ga0436361_0609661_14741_18748 1238
164 3300003791 Ga0055530_10001543 Ga0055530_100015434 1239
165 3300025273 Ga0209673_1000128 Ga0209673_100012852 1239
166 3300025284 Ga0209130_1000547 Ga0209130_100054729 1239
167 3300025291 Ga0209675_1001611 Ga0209675_10016112 1239
168 3300025292 Ga0209676_1000122 Ga0209676_100012212 1239
169 3300025294 Ga0209025_1007383 Ga0209025_10073833 1239
170 3300025295 Ga0209564_1000099 Ga0209564_1000099176 1239
171 3300025298 Ga0209050_1000433 Ga0209050_100043357 1239
172 3300025299 Ga0209256_1000063 Ga0209256_1000063221 1239
173 3300025302 Ga0207426_1000028 Ga0207426_1000028439 1239
174 3300025303 Ga0209051_1000002 Ga0209051_10000021526 1239
175 3300025304 Ga0209257_1000002 Ga0209257_10000021667 1239
176 3300031344 Ga0265316_10000168 Ga0265316_1000016811 1239
177 3300031548 Ga0307408_100000008 Ga0307408_100000008296 1239
178 3300037466 Ga0395898_0000965 Ga0395898_0000965_9984_13943 1239
179 3300042876 Ga0451577_0003122 Ga0451577_0003122_6973_10869 1239
180 3300006195 Ga0075366_10001164 Ga0075366_100011643 1240
181 3300006353 Ga0075370_10000410 Ga0075370_1000041014 1240
182 3300049579 Ga0501043_0000010 Ga0501043_0000010_124981_128886 1240
183 3300049580 Ga0501046_0000261 Ga0501046_0000261_32643_36548 1240
184 3300049581 Ga0501047_0000026 Ga0501047_0000026_96470_100375 1240
185 iso_pu_bacteria 2831864461 2831866437 1240
186 3300003578 Ga0006562J51391_1011567 Ga0006562J51391_10115672 1241
187 3300003792 Ga0055540_1003595 Ga0055540_10035952 1241
188 3300003794 Ga0055531_10004224 Ga0055531_100042243 1241
189 3300025292 Ga0209676_1000669 Ga0209676_100066938 1241
190 3300025298 Ga0209050_1000661 Ga0209050_100066138 1241
191 3300025303 Ga0209051_1000771 Ga0209051_100077129 1241
192 3300025304 Ga0209257_1000763 Ga0209257_10007633 1241
193 3300044656 Ga0466969_0000140 Ga0466969_0000140_7824_11636 1241
194 3300028794 Ga0307515_10016245 Ga0307515_100162456 1242
195 3300048927 Ga0496124_0000086 Ga0496124_0000086_167789_171646 1242
196 3300014497 Ga0182008_10001208 Ga0182008_100012087 1243
197 3300031251 Ga0265327_10000058 Ga0265327_1000005893 1243
198 3300031251 Ga0265327_10000814 Ga0265327_1000081433 1243
199 3300048924 Ga0496121_0018367 Ga0496121_0018367_28_3840 1243
200 iso_pu_bacteria 2643221639 2644217776 1243
201 iso_pu_bacteria 2643221646 2644258484 1243
202 3300025935 Ga0207709_10000468 Ga0207709_1000046824 1244
203 3300028794 Ga0307515_10001399 Ga0307515_1000139911 1244
204 3300031616 Ga0307508_10000056 Ga0307508_1000005656 1244
205 3300031649 Ga0307514_10006798 Ga0307514_100067981 1244
206 3300053080 Ga0500635_0000101 Ga0500635_0000101_12455_16489 1244
207 iso_pu_bacteria 2738541337 2739056837 1244
208 3300027695 Ga0209966_1000052 Ga0209966_100005224 1245
209 3300050496 nmdc:mga07m45_9323_c1 nmdc:mga07m45_9323_c1_32_3877 1245
210 3300005455 Ga0070663_100002916 Ga0070663_1000029167 1246
211 3300026067 Ga0207678_10004266 Ga0207678_100042666 1246
212 3300037471 Ga0395905_0001298 Ga0395905_0001298_16958_20932 1246
213 3300047321 Ga0495676_0001397 Ga0495676_0001397_2405_6190 1246
214 3300047673 Ga0495593_0001597 Ga0495593_0001597_6751_10536 1246
215 3300048089 Ga0495614_0000266 Ga0495614_0000266_15641_19426 1246
216 3300053093 Ga0500651_0000063 Ga0500651_0000063_2090_5875 1246
217 3300053110 Ga0500571_000022 Ga0500571_000022_11244_15029 1246
218 3300053134 Ga0500658_0000439 Ga0500658_0000439_8677_12462 1246
219 3300053141 Ga0500574_000081 Ga0500574_000081_5866_9651 1246
220 iso_pu_bacteria 2574179768 2574431143 1246
221 3300002987 JGI25159J45721_1001410 JGI25159J45721_10014103 1247
222 3300002987 JGI25159J45721_1003370 JGI25159J45721_10033701 1247
223 3300003354 JGI25160J50197_1000321 JGI25160J50197_100032129 1247
224 3300003374 JGI25161J50226_1000070 JGI25161J50226_100007060 1247
225 3300025284 Ga0209130_1000166 Ga0209130_100016629 1247
226 3300025298 Ga0209050_1002220 Ga0209050_10022203 1247
227 3300025302 Ga0207426_1000025 Ga0207426_1000025351 1247
228 3300009177 Ga0105248_10011889 Ga0105248_100118893 1248
229 3300025728 Ga0207655_1001746 Ga0207655_100174611 1248
230 3300025941 Ga0207711_10008488 Ga0207711_100084886 1248
231 3300028794 Ga0307515_10000628 Ga0307515_1000062848 1248
232 iso_pu_bacteria 2818991446 2819597253 1248
233 3300030742 Ga0316183_1033424 Ga0316183_103342413 1249
234 3300035114 Ga0373939_0000161 Ga0373939_0000161_136_4065 1250
235 iso_pu_bacteria 2513020051 2513228724 1250
236 iso_pu_bacteria 2643221658 2644327651 1250
237 iso_pu_bacteria 2643221672 2644401444 1250
238 iso_pu_bacteria 2738541307 2738879382 1250
239 3300021361 Ga0213872_10000003 Ga0213872_10000003176 1251
240 3300039447 Ga0436361_0297398 Ga0436361_0297398_19423_23340 1251
241 iso_pu_bacteria 2599185214 2599623709 1251
242 iso_pu_bacteria 2599185226 2599671672 1251
243 iso_pu_bacteria 2599185227 2599681315 1251
244 iso_pu_bacteria 2599185229 2599693282 1251
245 iso_pu_bacteria 2721755523 2722882981 1251
246 iso_pu_bacteria 2928070936 2928071671 1251
247 3300006195 Ga0075366_10005778 Ga0075366_100057783 1252
248 3300025245 Ga0207425_1000239 Ga0207425_10002392 1252
249 3300025258 Ga0209129_1000007 Ga0209129_1000007498 1252
250 3300025263 Ga0209565_1000137 Ga0209565_100013791 1252
251 3300025273 Ga0209673_1000269 Ga0209673_100026928 1252
252 3300025284 Ga0209130_1000076 Ga0209130_1000076143 1252
253 3300025284 Ga0209130_1000535 Ga0209130_100053510 1252
254 3300025291 Ga0209675_1000114 Ga0209675_1000114121 1252
255 3300025294 Ga0209025_1000491 Ga0209025_100049172 1252
256 3300025295 Ga0209564_1000073 Ga0209564_100007320 1252
257 3300025297 Ga0209758_1000025 Ga0209758_100002528 1252
258 3300025297 Ga0209758_1006216 Ga0209758_10062166 1252
259 3300025299 Ga0209256_1000050 Ga0209256_100005028 1252
260 3300025302 Ga0207426_1000001 Ga0207426_1000001609 1252
261 3300025304 Ga0209257_1007247 Ga0209257_10072473 1252
262 iso_pu_bacteria 2885192300 2885192665 1252
263 3300015683 Ga0183362_10001 Ga0183362_100011302 1253
264 3300037312 Ga0395899_0003234 Ga0395899_0003234_7021_10971 1253
265 iso_pu_bacteria 2643221654 2644304560 1254
266 3300003187 JGI25151J46595_10001802 JGI25151J46595_100018027 1255
267 3300025294 Ga0209025_1000248 Ga0209025_100024831 1255
268 3300046513 Ga0495616_0001248 Ga0495616_0001248_11187_14972 1255
269 3300053134 Ga0500658_0000768 Ga0500658_0000768_3390_7175 1255
270 3300003792 Ga0055540_1005546 Ga0055540_10055462 1256
271 3300003794 Ga0055531_10000280 Ga0055531_100002808 1256
272 3300025303 Ga0209051_1000406 Ga0209051_100040612 1256
273 3300025304 Ga0209257_1000012 Ga0209257_1000012478 1256
274 3300046660 Ga0495625_0000396 Ga0495625_0000396_62604_66446 1256
275 iso_pu_bacteria 2585428062 2587755110 1256
276 3300006353 Ga0075370_10005753 Ga0075370_100057532 1259
277 3300031548 Ga0307408_100010920 Ga0307408_1000109204 1259
278 3300042876 Ga0451577_0000412 Ga0451577_0000412_31924_35997 1259
279 3300044712 Ga0453684_0000475 Ga0453684_0000475_113746_117819 1259
280 iso_pu_bacteria 2643221570 2643866652 1259
281 iso_pu_bacteria 2643221652 2644296296 1259
282 3300003773 Ga0055537_1000296 Ga0055537_100029625 1260
283 3300003784 Ga0055534_1000092 Ga0055534_100009257 1260
284 3300003790 Ga0055528_1000190 Ga0055528_10001907 1260
285 3300003790 Ga0055528_1002109 Ga0055528_10021093 1260
286 3300025263 Ga0209565_1000073 Ga0209565_100007362 1260
287 3300025273 Ga0209673_1000127 Ga0209673_1000127105 1260
288 3300025291 Ga0209675_1000029 Ga0209675_1000029105 1260
289 3300027666 Ga0209282_1000109 Ga0209282_10001094 1260
290 3300013105 Ga0157369_10013008 Ga0157369_100130083 1262
291 3300042010 Ga0439452_002010 Ga0439452_002010_2627_6628 1262
292 3300045051 Ga0451576_0009563 Ga0451576_0009563_2749_6798 1262
293 3300041404 Ga0439436_0002414 Ga0439436_0002414_588_4589 1263
294 3300041413 Ga0439465_0000164 Ga0439465_0000164_371_4372 1263
295 3300046518 Ga0495631_0000829 Ga0495631_0000829_3212_7108 1264
296 3300031711 Ga0265314_10007625 Ga0265314_100076256 1267
297 iso_pu_bacteria 2643221660 2644340167 1267
298 3300009036 Ga0105244_10003103 Ga0105244_100031036 1268
299 3300014497 Ga0182008_10005129 Ga0182008_100051292 1268
300 3300015261 Ga0182006_1006775 Ga0182006_10067752 1268
301 3300042007 Ga0439449_0002505 Ga0439449_0002505_2643_6560 1268
302 3300050496 nmdc:mga07m45_6869_c1 nmdc:mga07m45_6869_c1_1350_5201 1268
303 iso_pu_bacteria 2643221628 2644159626 1269
304 iso_pu_bacteria 2894023352 2894025848 1269
305 iso_pu_bacteria 2928115317 2928119706 1269
306 3300031548 Ga0307408_100000177 Ga0307408_10000017735 1270
307 3300031901 Ga0307406_10000349 Ga0307406_1000034917 1270
308 3300048905 Ga0496102_0011933 Ga0496102_0011933_2729_6667 1270
309 iso_pu_bacteria 2839138175 2839138807 1270
310 3300004625 Ga0055543_1000368 Ga0055543_100036829 1271
311 3300003792 Ga0055540_1001720 Ga0055540_10017203 1272
312 3300025303 Ga0209051_1001233 Ga0209051_100123311 1272
313 3300031649 Ga0307514_10002080 Ga0307514_100020804 1272
314 3300037312 Ga0395899_0002226 Ga0395899_0002226_10951_14796 1272
315 3300037466 Ga0395898_0008122 Ga0395898_0008122_3594_7439 1272
316 3300037471 Ga0395905_0000395 Ga0395905_0000395_22437_26318 1272
317 3300037471 Ga0395905_0008416 Ga0395905_0008416_5447_9292 1272
318 iso_pu_bacteria 2881101125 2881101897 1272
319 iso_pu_bacteria 2899924645 2899924760 1272
320 iso_pu_bacteria 2904449895 2904454400 1272
321 iso_pu_bacteria 2904456579 2904461157 1272
322 iso_pu_bacteria 2928037797 2928039114 1272
323 iso_pu_bacteria 2928044640 2928045281 1272
324 iso_pu_bacteria 2928051484 2928053086 1272
325 iso_pu_bacteria 2928064002 2928064243 1272
326 iso_pu_bacteria 2932422444 2932423434 1272
327 3300044684 Ga0466966_0010860 Ga0466966_0010860_115_3963 1273
328 3300046692 Ga0495671_0004690 Ga0495671_0004690_1675_5517 1273
329 3300050496 nmdc:mga07m45_1657_c1 nmdc:mga07m45_1657_c1_4544_8461 1273
330 3300053079 Ga0500610_0000653 Ga0500610_0000653_2054_5896 1273
331 3300053079 Ga0500610_0001067 Ga0500610_0001067_4768_8610 1273
332 3300053121 Ga0500607_004896 Ga0500607_004896_2727_6629 1273
333 iso_pu_bacteria 2831265667 2831266379 1273
334 iso_pu_bacteria 2838054893 2838057499 1273
335 iso_pu_bacteria 2990710928 2990712160 1273
336 3300009148 Ga0105243_10021147 Ga0105243_100211472 1274
337 iso_pu_bacteria 2738543013 2739251279 1274
338 iso_pu_bacteria 2842747753 2842747831 1274
339 3300025284 Ga0209130_1001846 Ga0209130_10018463 1275
340 3300031456 Ga0307513_10026717 Ga0307513_100267172 1275
341 3300031901 Ga0307406_10000947 Ga0307406_1000094715 1275
342 iso_pu_bacteria 2643221683 2644468197 1275
343 iso_pu_bacteria 2842677519 2842679949 1275
344 iso_pu_bacteria 2842733646 2842736744 1275
345 iso_pu_bacteria 2885198086 2885204514 1275
346 iso_pu_bacteria 2885211737 2885218167 1275
347 iso_pu_bacteria 2904541872 2904548270 1275
348 iso_pu_bacteria 2919462493 2919466066 1275
349 iso_pu_bacteria 2928084124 2928084379 1275
350 iso_pu_bacteria 2929160207 2929163260 1275
351 iso_pu_bacteria 2929520902 2929527040 1275
352 iso_pu_bacteria 2945909444 2945911692 1275
353 iso_pu_bacteria 2945945610 2945948108 1275
354 iso_pu_bacteria 2945972063 2945977198 1275
355 iso_pu_bacteria 2945984333 2945986013 1275
356 3300005563 Ga0068855_100016007 Ga0068855_1000160076 1276
357 3300037471 Ga0395905_0000339 Ga0395905_0000339_23590_27513 1276
358 iso_pu_bacteria 2547132374 2548498807 1276
359 iso_pu_bacteria 2643221717 2644647751 1276
360 iso_pu_bacteria 2738541277 2738717769 1276
361 iso_pu_bacteria 2738543012 2739242975 1276
362 iso_pu_bacteria 2738543019 2739278455 1276
363 iso_pu_bacteria 2919704043 2919705528 1276
364 iso_pu_bacteria 2954767861 2954772274 1276
365 iso_pu_bacteria 2643221609 2644061823 1277
366 iso_pu_bacteria 2643221611 2644073596 1277
367 iso_pu_bacteria 2842718218 2842719205 1277
368 iso_pu_bacteria 2974320154 2974323649 1277
369 iso_pu_bacteria 2904479285 2904481897 1278
370 iso_pu_bacteria 2816332133 2816475878 1279
371 3300031456 Ga0307513_10000014 Ga0307513_10000014285 1281
372 iso_pu_bacteria 2939631187 2939633021 1281
373 iso_pu_bacteria 2643221596 2643991369 1285
374 3300031238 Ga0265332_10000128 Ga0265332_100001289 1286
375 3300042876 Ga0451577_0003311 Ga0451577_0003311_8015_12034 1286
376 3300044712 Ga0453684_0025877 Ga0453684_0025877_1063_5082 1286
377 3300045051 Ga0451576_0000781 Ga0451576_0000781_16711_20730 1286
378 3300025294 Ga0209025_1004623 Ga0209025_10046234 1292
379 3300031456 Ga0307513_10000010 Ga0307513_10000010180 1294
380 3300002704 JGI25155J39150_1000095 JGI25155J39150_10000951 1296
381 3300002705 JGI25156J39149_1000025 JGI25156J39149_1000025123 1296
382 3300002738 JGI25154J39366_1000045 JGI25154J39366_1000045123 1296
383 3300002741 JGI25157J39369_1000034 JGI25157J39369_1000034123 1296
384 3300025206 Ga0209435_100001 Ga0209435_100001859 1296
385 3300025246 Ga0209646_1000001 Ga0209646_10000011228 1296
386 3300025250 Ga0209026_1000003 Ga0209026_1000003859 1296
387 3300025256 Ga0209759_1000001 Ga0209759_1000001859 1296
388 3300053730 Ga0500645_000059 Ga0500645_000059_81934_85836 1296

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF11898

DUF3418

Domain of unknown function (DUF3418)

746

1389

0.97

PF07717

OB_NTP_bind

Oligonucleotide/oligosaccharide-binding (OB)-fold

651

733

0.89

PF00271

Helicase_C

Helicase conserved C-terminal domain

224

358

0.81

PF00270

DEAD

DEAD/DEAH box helicase

20

186

0.71

PF21010

HA2_C

Helicase associated domain (HA2), ratchet-like

452

513

0.69

Structural Annotation

Top 5 Hits

ID Description Score Start End
5z57-assembly1.cif.gz_x cryo-em structure of the human activated spliceosome (late bact) at 6.5 angstrom 0.9215 11 649
5z56-assembly1.cif.gz_x cryo-em structure of a human activated spliceosome (mature bact) at 5.1 angstrom. 0.9207 11 649
7dvq-assembly1.cif.gz_x cryo-em structure of the activated human minor spliceosome (minor bact complex) 0.9118 11 649
3i4u-assembly1.cif.gz_A-2 crystal structure analysis of a helicase associated domain 0.9113 407 650
5gm6-assembly1.cif.gz_Y cryo-em structure of the activated spliceosome (bact complex) at 3.5 angstrom resolution 0.9107 12 648
ID Description Score Start End Superfamily
af_P43329_253_420_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9347 200 370 3.40.50.300
af_P43329_253_420_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9239 200 370 3.40.50.300
af_Q4CTW3_199_373_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9192 200 374 3.40.50.300
af_P37024_180_347_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9151 200 372 3.40.50.300
af_A0A1D8PPJ3_357_530_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9138 199 372 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A5P0JK35-F1-model_v4 ATP-dependent RNA helicase HrpA 0.9627 266 364 GO:0003723
GO:0004386
AF-A0A4V1U7S8-F1-model_v4 deleted 0.9609 1073 1293
AF-A0A5B0G810-F1-model_v4 Helicase C-terminal domain-containing protein 0.9533 240 351 GO:0003723
GO:0004386
AF-A0A4V1U7S8-F1-model_v4 deleted 0.9522 1073 1293
AF-A0A854N1Q2-F1-model_v4 Helicase C-terminal domain-containing protein 0.9494 226 374 GO:0003723
GO:0004386

Feature Viewer

pLDDT pTM Quality
84.29 0.59 Medium
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Predicted Structure (AlphaFold2)

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