F426914

General Info

Members Datasets Scaffolds Average Seq Length
375 210 750 320

Family's Representative Sequence

Representative Sequence 3300000549|LJQas_1008665|LJQas_10086651
Length 351
Sequence VGDAHHGRLVEPHGRTVRRRADAPRNVCLVSAAKSPSVEIEVDDRVVRISNPDRVYFPESGATKLDLVEYYLAVGPGIVNALFERPCMLHRFPKGLAGEKVHQKRLPAGAPDWVETVRVHFPRWNRTADELCVTELASVIWAVQMSTVEFHPWNSRREDTEKPDEWRIDLDPGPLCDFGVVQRVAHVAHEVLDELGATGYPKTSGGSGMHVYVRIPPAHGFKDVRRAALAFAREVERRAPDDVTTTWWRKDRDPHALFVDYNQNARDHTIAAAYSVRGFPDARVSTPIRWEEVDDVDPHDFTMFTVPARFAELGDLHGDIDDHPFDIAPLLQWAERDEREGKEPPPDPEEG

Samples

Sample ID Description Type Environment
1 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
18 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
24 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
25 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
26 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
29 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
30 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
31 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
32 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
33 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
34 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
35 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
36 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
37 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
38 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
39 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
40 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
41 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
44 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
45 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
46 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
47 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
48 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
49 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
50 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
51 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
84 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
87 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
88 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
89 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
90 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
91 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
92 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
93 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
94 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
95 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
96 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
97 3300038996 Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot19 Metagenome Rhizosphere
98 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
99 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
100 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
101 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
102 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
103 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
104 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
105 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
106 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
107 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
108 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
109 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
110 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
111 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
112 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
113 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
114 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
115 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
116 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
117 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
118 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
119 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
120 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
121 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
122 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
123 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
124 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
125 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
126 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
127 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
128 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
129 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
130 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
131 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
132 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
133 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
134 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
135 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
137 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
143 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
144 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
147 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
148 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
149 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
150 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
151 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
152 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
153 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
154 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
155 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
156 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
157 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
158 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
159 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
160 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
161 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
162 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
163 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
164 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
165 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
166 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
167 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
168 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
169 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
170 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
171 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
172 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
173 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
174 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
175 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
176 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
177 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
178 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
179 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
180 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
181 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
182 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
183 2515154088 Salinispora arenicola CNT800 Isolate Rhizosphere
184 2515154129 Salinispora pacifica CNS103 Isolate Rhizosphere
185 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
186 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
187 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
188 2643221561 Nocardioides sp. Root151 Isolate Unclassified
189 2643221576 Nocardioides sp. Root614 Isolate Unclassified
190 2643221590 Nocardioides sp. Root682 Isolate Unclassified
191 2643221604 Nocardioides sp. Root190 Isolate Unclassified
192 2643221615 Nocardioides sp. Root224 Isolate Unclassified
193 2643221617 Nocardioides sp. Root79 Isolate Unclassified
194 2643221620 Nocardioides sp. Root240 Isolate Unclassified
195 2643221641 Nocardioides sp. Root122 Isolate Unclassified
196 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
197 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
198 2643221696 Nocardioides sp. Root140 Isolate Unclassified
199 2643221711 Terrabacter sp. Root85 Isolate Unclassified
200 2739367898 Nocardioides sp. CF479 Isolate Unclassified
201 2744054611 Aldersonia kunmingensis DSM 45001 Isolate Rhizosphere
202 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
203 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
204 2904770941 Rhodococcus fascians 1339 Isolate Rhizosphere
205 2908811453 Rhodococcus sp. 1R11 Isolate Unclassified
206 2919420072 Rhodococcus fascians 3241 Isolate Rhizosphere
207 2919432681 Rhodococcus sp. 3258 Isolate Rhizosphere
208 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
209 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
210 8054609563 Nocardioides astragali CGMCC 4.7327 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 92.27
Metatranscriptomes 0.27
Isolates 7.47

Biome Distribution

Category Percentage (%)
Aerial Root 0.53
Bulb 0
Endosphere 10.13
Nodule 0.27
Rhizoplane 11.73
Rhizosphere 70.13
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 LJQas_1008665 3300000549 Bacteria 1233
2 JGI24735J21928_10015529 3300002067 Bacteria 2374
3 Ga0070658_10098675 3300005327 Bacteria 2413
4 Ga0070658_10381685 3300005327 Bacteria 1209
5 Ga0070683_100043317 3300005329 Bacteria 4148
6 Ga0070683_100214986 3300005329 Bacteria 1827
7 Ga0070683_100246726 3300005329 Bacteria 1698
8 Ga0070666_10021111 3300005335 Bacteria 4218
9 Ga0070682_100065781 3300005337 Bacteria 2305
10 Ga0070682_100339707 3300005337 Bacteria 1116
11 Ga0068868_100194093 3300005338 Bacteria 1689
12 Ga0070692_10004963 3300005345 Bacteria 5616
13 Ga0070675_100183196 3300005354 Bacteria 1812
14 Ga0070671_100138070 3300005355 Bacteria 2056
15 Ga0070673_100170927 3300005364 Bacteria 1855
16 Ga0070714_100336376 3300005435 Bacteria 1415
17 Ga0070700_100028549 3300005441 Bacteria 3320
18 Ga0070678_100108950 3300005456 Bacteria 2163
19 Ga0070679_100010892 3300005530 Bacteria 8639
20 Ga0070679_100395738 3300005530 Bacteria 1328
21 Ga0070679_100508274 3300005530 Bacteria 1149
22 Ga0070684_100011120 3300005535 Bacteria 7162
23 Ga0070684_100259543 3300005535 Bacteria 1589
24 Ga0070672_100027110 3300005543 Bacteria 4271
25 Ga0070665_100000583 3300005548 Bacteria 50878
26 Ga0070665_100000703 3300005548 Bacteria 44593
27 Ga0068855_100024275 3300005563 Bacteria 7259
28 Ga0068856_100020564 3300005614 Bacteria 6412
29 Ga0070702_100026763 3300005615 Bacteria 3103
30 Ga0068852_100129307 3300005616 Bacteria 2324
31 Ga0068852_100237875 3300005616 Bacteria 1739
32 Ga0068852_100354487 3300005616 Bacteria 1433
33 Ga0068864_100055510 3300005618 Bacteria 3421
34 Ga0068861_100029097 3300005719 Bacteria 4037
35 Ga0068863_100000675 3300005841 Bacteria 34506
36 Ga0068858_100012432 3300005842 Bacteria 8026
37 Ga0068860_100000214 3300005843 Bacteria 90752
38 Ga0068860_100000696 3300005843 Bacteria 38651
39 Ga0075365_10003055 3300006038 Bacteria 8489
40 Ga0075365_10016634 3300006038 Bacteria 4479
41 Ga0075365_10020017 3300006038 Bacteria 4141
42 Ga0075365_10028081 3300006038 Bacteria 3586
43 Ga0075365_10073716 3300006038 Bacteria 2301
44 Ga0075365_10131625 3300006038 Bacteria 1731
45 Ga0075363_100000197 3300006048 Bacteria 16386
46 Ga0075363_100000954 3300006048 Bacteria 10275
47 Ga0075364_10000803 3300006051 Bacteria 16556
48 Ga0075364_10007920 3300006051 Bacteria 6329
49 Ga0075364_10061742 3300006051 Bacteria 2459
50 Ga0075364_10079140 3300006051 Bacteria 2171
51 Ga0075362_10041616 3300006177 Bacteria 2027
52 Ga0075367_10000646 3300006178 Bacteria 13401
53 Ga0075369_10006220 3300006186 Bacteria 4508
54 Ga0075370_10006105 3300006353 Bacteria 6041
55 Ga0105245_10066257 3300009098 Bacteria 3268
56 Ga0105245_10143339 3300009098 Bacteria 2252
57 Ga0105245_10270844 3300009098 Bacteria 1656
58 Ga0105243_10059215 3300009148 Bacteria 3056
59 Ga0105242_10286432 3300009176 Bacteria 1498
60 Ga0105249_10073730 3300009553 Bacteria 3158
61 Ga0105239_10000854 3300010375 Bacteria 43307
62 Ga0105246_10000321 3300011119 Bacteria 25383
63 Ga0105246_10049110 3300011119 Bacteria 2888
64 Ga0157370_10321872 3300013104 Bacteria 1426
65 Ga0157369_10159972 3300013105 Bacteria 2377
66 Ga0157369_10330134 3300013105 Bacteria 1585
67 Ga0157372_10278982 3300013307 Bacteria 1943
68 Ga0157372_10568124 3300013307 Bacteria 1322
69 Ga0157380_10142963 3300014326 Bacteria 2058
70 Ga0182008_10098599 3300014497 Bacteria 1443
71 Ga0157379_10002714 3300014968 Bacteria 14938
72 Ga0157379_10022542 3300014968 Bacteria 5578
73 Ga0163161_10050984 3300017792 Bacteria 2996
74 Ga0163161_10260906 3300017792 Bacteria 1353
75 Ga0206353_11141925 3300020082 Bacteria 1494
76 Ga0213874_10028789 3300021377 Bacteria 1590
77 Ga0213875_10062750 3300021388 Bacteria 1738
78 Ga0207688_10019883 3300025901 Bacteria 3662
79 Ga0207680_10013326 3300025903 Bacteria 4220
80 Ga0207647_10053183 3300025904 Bacteria 2496
81 Ga0207643_10003180 3300025908 Bacteria 8845
82 Ga0207705_10077780 3300025909 Bacteria 2414
83 Ga0207707_10182807 3300025912 Bacteria 1830
84 Ga0207657_10109649 3300025919 Bacteria 2281
85 Ga0207652_10143139 3300025921 Bacteria 2138
86 Ga0207652_10386623 3300025921 Bacteria 1263
87 Ga0207659_10120403 3300025926 Bacteria 2011
88 Ga0207644_10119778 3300025931 Bacteria 2002
89 Ga0207706_10313240 3300025933 Bacteria 1366
90 Ga0207704_10010714 3300025938 Bacteria 4484
91 Ga0207691_10129162 3300025940 Bacteria 2233
92 Ga0207711_10055743 3300025941 Bacteria 3394
93 Ga0207711_10138898 3300025941 Bacteria 2185
94 Ga0207689_10100552 3300025942 Bacteria 2375
95 Ga0207661_10078910 3300025944 Bacteria 2712
96 Ga0207667_10077558 3300025949 Bacteria 3446
97 Ga0207651_10029725 3300025960 Bacteria 3468
98 Ga0207712_10264249 3300025961 Bacteria 1397
99 Ga0207668_10053250 3300025972 Bacteria 2804
100 Ga0207640_10093214 3300025981 Bacteria 2092
101 Ga0207677_10070860 3300026023 Bacteria 2458
102 Ga0207677_10153803 3300026023 Bacteria 1778
103 Ga0207703_10024197 3300026035 Bacteria 4778
104 Ga0207708_10008208 3300026075 Bacteria 7735
105 Ga0207708_10030987 3300026075 Bacteria 4059
106 Ga0207702_10264737 3300026078 Bacteria 1620
107 Ga0207641_10074606 3300026088 Bacteria 2926
108 Ga0207648_10019029 3300026089 Bacteria 6201
109 Ga0207676_10117343 3300026095 Bacteria 2238
110 Ga0207674_10004921 3300026116 Bacteria 15972
111 Ga0207674_10011797 3300026116 Bacteria 9806
112 Ga0207675_100091303 3300026118 Bacteria 2863
113 Ga0207683_10157680 3300026121 Bacteria 2050
114 Ga0207683_10158594 3300026121 Bacteria 2044
115 Ga0207698_10255773 3300026142 Bacteria 1606
116 Ga0209813_10004511 3300027866 Bacteria 3330
117 Ga0268266_10001679 3300028379 Bacteria 25483
118 Ga0268266_10007079 3300028379 Bacteria 10183
119 Ga0268264_10000027 3300028381 Bacteria 440852
120 Ga0268264_10000697 3300028381 Bacteria 39075
121 Ga0307410_10074924 3300031852 Bacteria 2358
122 Ga0307410_10164866 3300031852 Bacteria 1664
123 Ga0307412_10040602 3300031911 Bacteria 3011
124 Ga0307412_10200562 3300031911 Bacteria 1515
125 Ga0307409_100133675 3300031995 Bacteria 2124
126 Ga0307409_100148758 3300031995 Bacteria 2030
127 Ga0307409_100465554 3300031995 Bacteria 1223
128 Ga0307416_100003189 3300032002 Bacteria 9606
129 Ga0307416_100170051 3300032002 Bacteria 2027
130 Ga0307416_100274839 3300032002 Bacteria 1657
131 Ga0307416_100539247 3300032002 Bacteria 1238
132 Ga0307411_10083722 3300032005 Bacteria 2204
133 Ga0307411_10454875 3300032005 Bacteria 1072
134 Ga0307415_100003367 3300032126 Bacteria 8125
135 Ga0307415_100463250 3300032126 Bacteria 1099
136 Ga0395899_0020004 3300037312 Bacteria 5079
137 Ga0395900_0041858 3300037418 Bacteria 4721
138 Ga0395900_0203610 3300037418 Bacteria 2001
139 Ga0395898_0007961 3300037466 Bacteria 11238
140 Ga0395898_0087347 3300037466 Bacteria 3004
141 Ga0436364_0458256 3300037853 Bacteria 1453
142 Ga0436364_0977570 3300037853 Bacteria 2314
143 Ga0436364_1341086 3300037853 Bacteria 25667
144 Ga0436364_1351716 3300037853 Bacteria 2407
145 Ga0395901_0036005 3300038443 Bacteria 5114
146 Ga0395901_0141694 3300038443 Bacteria 2527
147 Ga0395901_0335939 3300038443 Bacteria 1561
148 Ga0242420_016470 3300038996 Bacteria 1288
149 Ga0436365_0817769 3300039437 Bacteria 2127
150 Ga0436363_0944282 3300039450 Bacteria 1914
151 Ga0466972_0022302 3300044658 Bacteria 3154
152 Ga0466972_0028209 3300044658 Bacteria 2771
153 Ga0466972_0114760 3300044658 Bacteria 1272
154 Ga0466965_0009106 3300044683 Bacteria 4607
155 Ga0466965_0025964 3300044683 Bacteria 2838
156 Ga0466965_0042078 3300044683 Bacteria 2252
157 Ga0466966_0032311 3300044684 Bacteria 3392
158 Ga0466966_0047407 3300044684 Bacteria 2740
159 Ga0466961_0021589 3300044693 Bacteria 4142
160 Ga0466961_0164665 3300044693 Bacteria 1381
161 Ga0466963_0024804 3300044694 Bacteria 3819
162 Ga0466963_0101929 3300044694 Bacteria 1965
163 Ga0466963_0268769 3300044694 Bacteria 1198
164 Ga0466964_0136992 3300044706 Bacteria 1121
165 Ga0466971_0009537 3300044719 Bacteria 4239
166 Ga0466971_0045320 3300044719 Bacteria 1975
167 Ga0466970_0003311 3300044765 Bacteria 7829
168 Ga0466970_0008994 3300044765 Bacteria 5037
169 Ga0466970_0023385 3300044765 Bacteria 3227
170 Ga0466970_0035248 3300044765 Bacteria 2651
171 Ga0466970_0046968 3300044765 Bacteria 2300
172 Ga0466970_0061779 3300044765 Bacteria 2008
173 Ga0466970_0063545 3300044765 Bacteria 1979
174 Ga0466957_0008476 3300044842 Bacteria 5847
175 Ga0466957_0193345 3300044842 Bacteria 1334
176 Ga0466960_0000704 3300044901 Bacteria 11646
177 Ga0466960_0049510 3300044901 Bacteria 2023
178 Ga0466960_0054213 3300044901 Bacteria 1946
179 Ga0466960_0076840 3300044901 Bacteria 1673
180 Ga0466960_0241337 3300044901 Bacteria 1001
181 Ga0466959_0067121 3300045049 Bacteria 2601
182 Ga0466958_0003179 3300045836 Bacteria 8465
183 Ga0466958_0020809 3300045836 Bacteria 3828
184 Ga0466958_0095328 3300045836 Bacteria 1845
185 Ga0466967_0017672 3300045976 Bacteria 5673
186 Ga0466967_0049293 3300045976 Bacteria 3682
187 Ga0466967_0113456 3300045976 Bacteria 2493
188 Ga0466967_0272366 3300045976 Bacteria 1622
189 Ga0466967_0474458 3300045976 Bacteria 1225
190 Ga0495590_0000075 3300046457 Bacteria 68919
191 Ga0495641_0111664 3300046461 Bacteria 1219
192 Ga0495667_0137368 3300046559 Bacteria 1576
193 Ga0495676_0301951 3300047321 Bacteria 1079
194 Ga0496101_0109448 3300048904 Bacteria 2078
195 Ga0496101_0111443 3300048904 Bacteria 2060
196 Ga0496102_0038477 3300048905 Bacteria 4317
197 Ga0496102_0067719 3300048905 Bacteria 3275
198 Ga0496102_0195237 3300048905 Bacteria 1907
199 Ga0496102_0318845 3300048905 Bacteria 1464
200 Ga0496102_0521735 3300048905 Bacteria 1110
201 Ga0496103_0034625 3300048906 Bacteria 3089
202 Ga0496103_0105456 3300048906 Bacteria 1787
203 Ga0496104_0158745 3300048907 Bacteria 2170
204 Ga0496104_0324136 3300048907 Bacteria 1453
205 Ga0496104_0358336 3300048907 Bacteria 1371
206 Ga0496105_0000812 3300048908 Bacteria 21146
207 Ga0496105_0072363 3300048908 Bacteria 2849
208 Ga0496105_0072601 3300048908 Bacteria 2844
209 Ga0496105_0092525 3300048908 Bacteria 2497
210 Ga0496106_0055298 3300048909 Bacteria 2999
211 Ga0496106_0072694 3300048909 Bacteria 2630
212 Ga0496107_0068507 3300048910 Bacteria 2575
213 Ga0496107_0169327 3300048910 Bacteria 1621
214 Ga0496107_0220937 3300048910 Bacteria 1409
215 Ga0496108_0053946 3300048911 Bacteria 3373
216 Ga0496108_0160064 3300048911 Bacteria 1945
217 Ga0496108_0203782 3300048911 Bacteria 1717
218 Ga0496108_0235691 3300048911 Bacteria 1592
219 Ga0496108_0240922 3300048911 Bacteria 1573
220 Ga0496108_0274569 3300048911 Bacteria 1467
221 Ga0496109_0016934 3300048912 Bacteria 6380
222 Ga0496109_0030589 3300048912 Bacteria 4826
223 Ga0496109_0061755 3300048912 Bacteria 3426
224 Ga0496109_0188562 3300048912 Bacteria 1937
225 Ga0496109_0198264 3300048912 Bacteria 1887
226 Ga0496110_0049365 3300048913 Bacteria 3691
227 Ga0496110_0059295 3300048913 Bacteria 3373
228 Ga0496110_0077285 3300048913 Bacteria 2961
229 Ga0496111_0050870 3300048914 Bacteria 2990
230 Ga0496111_0080952 3300048914 Bacteria 2370
231 Ga0496111_0101659 3300048914 Bacteria 2112
232 Ga0496111_0134435 3300048914 Bacteria 1831
233 Ga0496112_0112141 3300048915 Bacteria 2697
234 Ga0496113_0268455 3300048916 Bacteria 1363
235 Ga0496114_0008673 3300048917 Bacteria 8056
236 Ga0496114_0013621 3300048917 Bacteria 6520
237 Ga0496114_0031053 3300048917 Bacteria 4394
238 Ga0496122_0079752 3300048925 Bacteria 2286
239 Ga0496123_0040690 3300048926 Bacteria 3232
240 Ga0496124_0089693 3300048927 Bacteria 2510
241 Ga0501031_0044725 3300049568 Bacteria 2889
242 Ga0501031_0217381 3300049568 Bacteria 1245
243 Ga0501032_0002683 3300049569 Bacteria 13879
244 Ga0501032_0043558 3300049569 Bacteria 3039
245 Ga0501032_0215969 3300049569 Bacteria 1249
246 Ga0501033_0149876 3300049570 Bacteria 1683
247 Ga0501033_0293243 3300049570 Bacteria 1146
248 Ga0501036_0016058 3300049572 Bacteria 6255
249 Ga0501036_0482143 3300049572 Bacteria 1032
250 Ga0501037_0033594 3300049573 Bacteria 3788
251 Ga0501038_0039371 3300049574 Bacteria 4134
252 Ga0501039_0034102 3300049575 Bacteria 3928
253 Ga0501039_0065672 3300049575 Bacteria 2815
254 Ga0501039_0103487 3300049575 Bacteria 2222
255 Ga0501039_0269397 3300049575 Bacteria 1338
256 Ga0501040_0003145 3300049576 Bacteria 10708
257 Ga0501040_0008428 3300049576 Bacteria 6698
258 Ga0501040_0290199 3300049576 Bacteria 1169
259 Ga0501041_0008683 3300049577 Bacteria 5985
260 Ga0501042_0001539 3300049578 Bacteria 13664
261 Ga0501042_0041277 3300049578 Bacteria 3280
262 Ga0501042_0075407 3300049578 Bacteria 2414
263 Ga0501042_0076075 3300049578 Bacteria 2403
264 Ga0501046_0001157 3300049580 Bacteria 25667
265 Ga0501046_0013217 3300049580 Bacteria 6998
266 Ga0501047_0065836 3300049581 Bacteria 3492
267 Ga0501047_0083842 3300049581 Bacteria 3063
268 Ga0501048_0002551 3300049582 Bacteria 13936
269 Ga0501048_0038607 3300049582 Bacteria 3426
270 Ga0501048_0059344 3300049582 Bacteria 2711
271 Ga0501048_0108958 3300049582 Bacteria 1955
272 Ga0501048_0367023 3300049582 Bacteria 1027
273 Ga0501067_0007279 3300049583 Bacteria 6144
274 Ga0501068_0008646 3300049584 Bacteria 5675
275 Ga0501068_0045748 3300049584 Bacteria 2637
276 Ga0501068_0180454 3300049584 Bacteria 1335
277 Ga0501069_0046344 3300049585 Bacteria 2411
278 Ga0501069_0067619 3300049585 Bacteria 1999
279 Ga0501070_0005938 3300049586 Bacteria 10406
280 Ga0501070_0022083 3300049586 Bacteria 5330
281 Ga0501070_0094521 3300049586 Bacteria 2474
282 Ga0501070_0438206 3300049586 Bacteria 1054
283 Ga0501071_0000355 3300049587 Bacteria 22415
284 Ga0501071_0007777 3300049587 Bacteria 7069
285 Ga0501071_0049757 3300049587 Bacteria 3017
286 Ga0501072_0006810 3300049588 Bacteria 8676
287 Ga0501072_0124961 3300049588 Bacteria 2049
288 Ga0501072_0260238 3300049588 Bacteria 1381
289 Ga0501073_0102216 3300049589 Bacteria 1990
290 Ga0501074_0001472 3300049590 Bacteria 15829
291 Ga0501074_0043087 3300049590 Bacteria 3266
292 Ga0501075_0037356 3300049591 Bacteria 3628
293 Ga0501075_0160008 3300049591 Bacteria 1718
294 Ga0501075_0172045 3300049591 Bacteria 1653
295 Ga0501076_0000758 3300049592 Bacteria 20827
296 Ga0501077_0024168 3300049593 Bacteria 3857
297 Ga0501077_0096543 3300049593 Bacteria 1873
298 Ga0501079_0012673 3300049741 Bacteria 6440
299 Ga0501079_0018510 3300049741 Bacteria 5322
300 Ga0501079_0049308 3300049741 Bacteria 3249
301 Ga0501079_0209386 3300049741 Bacteria 1523
302 Ga0501080_0153394 3300049742 Bacteria 2128
303 Ga0501080_0162993 3300049742 Bacteria 2058
304 Ga0501081_0014495 3300049743 Bacteria 5200
305 Ga0501081_0020912 3300049743 Bacteria 4367
306 Ga0501083_0048774 3300049744 Bacteria 2857
307 Ga0501035_0018555 3300049822 Bacteria 6408
308 Ga0501035_0071831 3300049822 Bacteria 3063
309 Ga0501035_0138660 3300049822 Bacteria 2115
310 Ga0501035_0415548 3300049822 Bacteria 1117
311 Ga0501044_0043340 3300049823 Bacteria 4674
312 Ga0501044_0093284 3300049823 Bacteria 3035
313 Ga0501044_0373891 3300049823 Bacteria 1341
314 Ga0501045_0038334 3300049824 Bacteria 3485
315 Ga0501045_0044566 3300049824 Bacteria 3231
316 nmdc:mga03n38_9919_c1 3300050490 Bacteria 3484
317 nmdc:mga00v17_2236_c1 3300050491 Bacteria 9924
318 nmdc:mga00v17_37305_c1 3300050491 Bacteria 2901
319 nmdc:mga00v17_4230_c1 3300050491 Bacteria 7448
320 nmdc:mga00v17_66707_c1 3300050491 Bacteria 2222
321 nmdc:mga0yw44_131855_c1 3300050492 Bacteria 1619
322 nmdc:mga0yw44_1568_c1 3300050492 Bacteria 9161
323 nmdc:mga0yw44_3212_c1 3300050492 Bacteria 7194
324 nmdc:mga0yw44_49389_c1 3300050492 Bacteria 2539
325 nmdc:mga0yw44_65848_c1 3300050492 Bacteria 2234
326 nmdc:mga06z11_7812_c1 3300050494 Bacteria 4424
327 nmdc:mga04h51_86093_c1 3300050495 Bacteria 1124
328 nmdc:mga07m45_12189_c1 3300050496 Bacteria 4537
329 nmdc:mga07m45_141999_c1 3300050496 Bacteria 1391
330 nmdc:mga07m45_40775_c1 3300050496 Bacteria 2598
331 nmdc:mga0sz30_5762_c1 3300050516 Bacteria 4562
332 Ga0495601_0079054 3300053077 Bacteria 2108
333 Ga0495619_0039237 3300053085 Bacteria 3091
334 Ga0495619_0077161 3300053085 Bacteria 2238
335 Ga0500644_0000284 3300053088 Bacteria 28069
336 Ga0500641_0001088 3300053096 Bacteria 9669
337 Ga0500556_0000588 3300053104 Bacteria 23996
338 Ga0500593_000190 3300053117 Bacteria 25004
339 Ga0500573_0034360 3300053140 Bacteria 2925
340 Ga0501084_0009366 3300054114 Bacteria 8103
341 Ga0501084_0043497 3300054114 Bacteria 3757
342 Ga0501084_0141961 3300054114 Bacteria 2022
343 Ga0501082_0072179 3300060353 Bacteria 2973
344 Ga0466962_0017631 3300061719 Bacteria 3438
345 Ga0530510_0038985 3300061734 Bacteria 3430
346 Ga0530510_0041151 3300061734 Bacteria 3336
347 Ga0530510_0099794 3300061734 Bacteria 2123
348 2515495947 2515154088 Bacteria 5526283
349 2515719259 2515154129 Bacteria 5584369
350 2516086562 2515154202 Bacteria 5471270
351 2523385535 2523231044 Bacteria 6434991
352 2552106646 2551306166 Bacteria 9731570
353 2643825913 2643221561 Bacteria 4984412
354 2643891689 2643221576 Bacteria 5214352
355 2643960737 2643221590 Bacteria 5214697
356 2644035749 2643221604 Bacteria 5014917
357 2644093951 2643221615 Bacteria 5487866
358 2644102363 2643221617 Bacteria 5139111
359 2644115587 2643221620 Bacteria 5134593
360 2644230361 2643221641 Bacteria 4490190
361 2644323795 2643221657 Bacteria 5490246
362 2644455680 2643221681 Bacteria 3707866
363 2644531908 2643221696 Bacteria 5431823
364 2644609596 2643221711 Bacteria 4865335
365 2740168965 2739367898 Bacteria 4367674
366 2744955401 2744054611 Bacteria 5611514
367 2812333113 2811994874 Bacteria 5367947
368 2855391113 2855386786 Bacteria 4752232
369 2904774518 2904770941 Bacteria 5580202
370 2908813349 2908811453 Bacteria 5478616
371 2919424691 2919420072 Bacteria 5390363
372 2919436928 2919432681 Bacteria 5390474
373 2984579978 2984576629 Bacteria 4248407
374 2990260759 2990256926 Bacteria 4252839
375 8054611202 8054609563 Bacteria 5170090
376 LJQas_1008665
377 JGI24735J21928_10015529
378 Ga0070658_10098675
379 Ga0070658_10381685
380 Ga0070683_100043317
381 Ga0070683_100214986
382 Ga0070683_100246726
383 Ga0070666_10021111
384 Ga0070682_100065781
385 Ga0070682_100339707
386 Ga0068868_100194093
387 Ga0070692_10004963
388 Ga0070675_100183196
389 Ga0070671_100138070
390 Ga0070673_100170927
391 Ga0070714_100336376
392 Ga0070700_100028549
393 Ga0070678_100108950
394 Ga0070679_100010892
395 Ga0070679_100395738
396 Ga0070679_100508274
397 Ga0070684_100011120
398 Ga0070684_100259543
399 Ga0070672_100027110
400 Ga0070665_100000583
401 Ga0070665_100000703
402 Ga0068855_100024275
403 Ga0068856_100020564
404 Ga0070702_100026763
405 Ga0068852_100129307
406 Ga0068852_100237875
407 Ga0068852_100354487
408 Ga0068864_100055510
409 Ga0068861_100029097
410 Ga0068863_100000675
411 Ga0068858_100012432
412 Ga0068860_100000214
413 Ga0068860_100000696
414 Ga0075365_10003055
415 Ga0075365_10016634
416 Ga0075365_10020017
417 Ga0075365_10028081
418 Ga0075365_10073716
419 Ga0075365_10131625
420 Ga0075363_100000197
421 Ga0075363_100000954
422 Ga0075364_10000803
423 Ga0075364_10007920
424 Ga0075364_10061742
425 Ga0075364_10079140
426 Ga0075362_10041616
427 Ga0075367_10000646
428 Ga0075369_10006220
429 Ga0075370_10006105
430 Ga0105245_10066257
431 Ga0105245_10143339
432 Ga0105245_10270844
433 Ga0105243_10059215
434 Ga0105242_10286432
435 Ga0105249_10073730
436 Ga0105239_10000854
437 Ga0105246_10000321
438 Ga0105246_10049110
439 Ga0157370_10321872
440 Ga0157369_10159972
441 Ga0157369_10330134
442 Ga0157372_10278982
443 Ga0157372_10568124
444 Ga0157380_10142963
445 Ga0182008_10098599
446 Ga0157379_10002714
447 Ga0157379_10022542
448 Ga0163161_10050984
449 Ga0163161_10260906
450 Ga0206353_11141925
451 Ga0213874_10028789
452 Ga0213875_10062750
453 Ga0207688_10019883
454 Ga0207680_10013326
455 Ga0207647_10053183
456 Ga0207643_10003180
457 Ga0207705_10077780
458 Ga0207707_10182807
459 Ga0207657_10109649
460 Ga0207652_10143139
461 Ga0207652_10386623
462 Ga0207659_10120403
463 Ga0207644_10119778
464 Ga0207706_10313240
465 Ga0207704_10010714
466 Ga0207691_10129162
467 Ga0207711_10055743
468 Ga0207711_10138898
469 Ga0207689_10100552
470 Ga0207661_10078910
471 Ga0207667_10077558
472 Ga0207651_10029725
473 Ga0207712_10264249
474 Ga0207668_10053250
475 Ga0207640_10093214
476 Ga0207677_10070860
477 Ga0207677_10153803
478 Ga0207703_10024197
479 Ga0207708_10008208
480 Ga0207708_10030987
481 Ga0207702_10264737
482 Ga0207641_10074606
483 Ga0207648_10019029
484 Ga0207676_10117343
485 Ga0207674_10004921
486 Ga0207674_10011797
487 Ga0207675_100091303
488 Ga0207683_10157680
489 Ga0207683_10158594
490 Ga0207698_10255773
491 Ga0209813_10004511
492 Ga0268266_10001679
493 Ga0268266_10007079
494 Ga0268264_10000027
495 Ga0268264_10000697
496 Ga0307410_10074924
497 Ga0307410_10164866
498 Ga0307412_10040602
499 Ga0307412_10200562
500 Ga0307409_100133675
501 Ga0307409_100148758
502 Ga0307409_100465554
503 Ga0307416_100003189
504 Ga0307416_100170051
505 Ga0307416_100274839
506 Ga0307416_100539247
507 Ga0307411_10083722
508 Ga0307411_10454875
509 Ga0307415_100003367
510 Ga0307415_100463250
511 Ga0395899_0020004
512 Ga0395900_0041858
513 Ga0395900_0203610
514 Ga0395898_0007961
515 Ga0395898_0087347
516 Ga0436364_0458256
517 Ga0436364_0977570
518 Ga0436364_1341086
519 Ga0436364_1351716
520 Ga0395901_0036005
521 Ga0395901_0141694
522 Ga0395901_0335939
523 Ga0242420_016470
524 Ga0436365_0817769
525 Ga0436363_0944282
526 Ga0466972_0022302
527 Ga0466972_0028209
528 Ga0466972_0114760
529 Ga0466965_0009106
530 Ga0466965_0025964
531 Ga0466965_0042078
532 Ga0466966_0032311
533 Ga0466966_0047407
534 Ga0466961_0021589
535 Ga0466961_0164665
536 Ga0466963_0024804
537 Ga0466963_0101929
538 Ga0466963_0268769
539 Ga0466964_0136992
540 Ga0466971_0009537
541 Ga0466971_0045320
542 Ga0466970_0003311
543 Ga0466970_0008994
544 Ga0466970_0023385
545 Ga0466970_0035248
546 Ga0466970_0046968
547 Ga0466970_0061779
548 Ga0466970_0063545
549 Ga0466957_0008476
550 Ga0466957_0193345
551 Ga0466960_0000704
552 Ga0466960_0049510
553 Ga0466960_0054213
554 Ga0466960_0076840
555 Ga0466960_0241337
556 Ga0466959_0067121
557 Ga0466958_0003179
558 Ga0466958_0020809
559 Ga0466958_0095328
560 Ga0466967_0017672
561 Ga0466967_0049293
562 Ga0466967_0113456
563 Ga0466967_0272366
564 Ga0466967_0474458
565 Ga0495590_0000075
566 Ga0495641_0111664
567 Ga0495667_0137368
568 Ga0495676_0301951
569 Ga0496101_0109448
570 Ga0496101_0111443
571 Ga0496102_0038477
572 Ga0496102_0067719
573 Ga0496102_0195237
574 Ga0496102_0318845
575 Ga0496102_0521735
576 Ga0496103_0034625
577 Ga0496103_0105456
578 Ga0496104_0158745
579 Ga0496104_0324136
580 Ga0496104_0358336
581 Ga0496105_0000812
582 Ga0496105_0072363
583 Ga0496105_0072601
584 Ga0496105_0092525
585 Ga0496106_0055298
586 Ga0496106_0072694
587 Ga0496107_0068507
588 Ga0496107_0169327
589 Ga0496107_0220937
590 Ga0496108_0053946
591 Ga0496108_0160064
592 Ga0496108_0203782
593 Ga0496108_0235691
594 Ga0496108_0240922
595 Ga0496108_0274569
596 Ga0496109_0016934
597 Ga0496109_0030589
598 Ga0496109_0061755
599 Ga0496109_0188562
600 Ga0496109_0198264
601 Ga0496110_0049365
602 Ga0496110_0059295
603 Ga0496110_0077285
604 Ga0496111_0050870
605 Ga0496111_0080952
606 Ga0496111_0101659
607 Ga0496111_0134435
608 Ga0496112_0112141
609 Ga0496113_0268455
610 Ga0496114_0008673
611 Ga0496114_0013621
612 Ga0496114_0031053
613 Ga0496122_0079752
614 Ga0496123_0040690
615 Ga0496124_0089693
616 Ga0501031_0044725
617 Ga0501031_0217381
618 Ga0501032_0002683
619 Ga0501032_0043558
620 Ga0501032_0215969
621 Ga0501033_0149876
622 Ga0501033_0293243
623 Ga0501036_0016058
624 Ga0501036_0482143
625 Ga0501037_0033594
626 Ga0501038_0039371
627 Ga0501039_0034102
628 Ga0501039_0065672
629 Ga0501039_0103487
630 Ga0501039_0269397
631 Ga0501040_0003145
632 Ga0501040_0008428
633 Ga0501040_0290199
634 Ga0501041_0008683
635 Ga0501042_0001539
636 Ga0501042_0041277
637 Ga0501042_0075407
638 Ga0501042_0076075
639 Ga0501046_0001157
640 Ga0501046_0013217
641 Ga0501047_0065836
642 Ga0501047_0083842
643 Ga0501048_0002551
644 Ga0501048_0038607
645 Ga0501048_0059344
646 Ga0501048_0108958
647 Ga0501048_0367023
648 Ga0501067_0007279
649 Ga0501068_0008646
650 Ga0501068_0045748
651 Ga0501068_0180454
652 Ga0501069_0046344
653 Ga0501069_0067619
654 Ga0501070_0005938
655 Ga0501070_0022083
656 Ga0501070_0094521
657 Ga0501070_0438206
658 Ga0501071_0000355
659 Ga0501071_0007777
660 Ga0501071_0049757
661 Ga0501072_0006810
662 Ga0501072_0124961
663 Ga0501072_0260238
664 Ga0501073_0102216
665 Ga0501074_0001472
666 Ga0501074_0043087
667 Ga0501075_0037356
668 Ga0501075_0160008
669 Ga0501075_0172045
670 Ga0501076_0000758
671 Ga0501077_0024168
672 Ga0501077_0096543
673 Ga0501079_0012673
674 Ga0501079_0018510
675 Ga0501079_0049308
676 Ga0501079_0209386
677 Ga0501080_0153394
678 Ga0501080_0162993
679 Ga0501081_0014495
680 Ga0501081_0020912
681 Ga0501083_0048774
682 Ga0501035_0018555
683 Ga0501035_0071831
684 Ga0501035_0138660
685 Ga0501035_0415548
686 Ga0501044_0043340
687 Ga0501044_0093284
688 Ga0501044_0373891
689 Ga0501045_0038334
690 Ga0501045_0044566
691 nmdc:mga03n38_9919_c1
692 nmdc:mga00v17_2236_c1
693 nmdc:mga00v17_37305_c1
694 nmdc:mga00v17_4230_c1
695 nmdc:mga00v17_66707_c1
696 nmdc:mga0yw44_131855_c1
697 nmdc:mga0yw44_1568_c1
698 nmdc:mga0yw44_3212_c1
699 nmdc:mga0yw44_49389_c1
700 nmdc:mga0yw44_65848_c1
701 nmdc:mga06z11_7812_c1
702 nmdc:mga04h51_86093_c1
703 nmdc:mga07m45_12189_c1
704 nmdc:mga07m45_141999_c1
705 nmdc:mga07m45_40775_c1
706 nmdc:mga0sz30_5762_c1
707 Ga0495601_0079054
708 Ga0495619_0039237
709 Ga0495619_0077161
710 Ga0500644_0000284
711 Ga0500641_0001088
712 Ga0500556_0000588
713 Ga0500593_000190
714 Ga0500573_0034360
715 Ga0501084_0009366
716 Ga0501084_0043497
717 Ga0501084_0141961
718 Ga0501082_0072179
719 Ga0466962_0017631
720 Ga0530510_0038985
721 Ga0530510_0041151
722 Ga0530510_0099794
723 2515495947
724 2515719259
725 2516086562
726 2523385535
727 2552106646
728 2643825913
729 2643891689
730 2643960737
731 2644035749
732 2644093951
733 2644102363
734 2644115587
735 2644230361
736 2644323795
737 2644455680
738 2644531908
739 2644609596
740 2740168965
741 2744955401
742 2812333113
743 2855391113
744 2904774518
745 2908813349
746 2919424691
747 2919436928
748 2984579978
749 2990260759
750 8054611202

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21686

LigD_Prim-Pol

LigD, primase-polymerase domain

63

317

0.97

PF01896

DNA_primase_S

DNA primase small subunit

168

290

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
6sa1-assembly1.cif.gz_A post catalytic complex of prim-polc from mycobacterium smegmatis with gapped dna and 3'-dutp 0.9612 35 348
5dmu-assembly1.cif.gz_A structure of the nhej polymerase from methanocella paludicola 0.9343 29 326
6sa1-assembly1.cif.gz_A post catalytic complex of prim-polc from mycobacterium smegmatis with gapped dna and 3'-dutp 0.9182 35 348
5dmu-assembly1.cif.gz_A structure of the nhej polymerase from methanocella paludicola 0.9163 29 326
2far-assembly2.cif.gz_B crystal structure of pseudomonas aeruginosa ligd polymerase domain with datp and manganese 0.9057 47 332
ID Description Score Start End Superfamily
af_P95226_24_305_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9657 54 333 3.90.920.10
af_O69697_22_304_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9634 54 333 3.90.920.10
af_P95226_24_305_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9556 54 333 3.90.920.10
af_O69697_22_304_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9501 54 333 3.90.920.10
af_P9WNV3_16_301_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9064 55 326 3.90.920.10
ID Description Score Start End GO Terms
AF-A0A6N7YT35-F1-model_v4 ATP-dependent DNA ligase 0.9906 33 338 GO:0016874
AF-A0A519FYF8-F1-model_v4 ATP-dependent DNA ligase 0.9881 180 348 GO:0016874
AF-A0A1Q7BZ75-F1-model_v4 DNA ligase D polymerase domain-containing protein 0.9847 35 348
AF-X0Y047-F1-model_v4 DNA ligase D polymerase domain-containing protein 0.9839 142 290
AF-A0A6A7L7A3-F1-model_v4 DNA primase 0.9835 31 348

Map