F426889

General Info

Members Datasets Scaffolds Average Seq Length
374 197 748 181

Family's Representative Sequence

Representative Sequence 3300053151|Ga0500604_0000494|Ga0500604_0000494_5880_6452
Length 190
Sequence MARRSFVRMNVRTLCLSILYEGEATGYEIRRLCVEGECSYFIEASFGSIYPALAKLEDEGLVTSRTEQQDGKPSKKVYSITEEGRNAFAQQLSEPLGEDMFRSPFLLFARFAHILPRDLVEARANEFLEKNIAAHRKLEEAFAERSSNAADTWVINYGRAVMEVAETHMRSHMHELITLARAEPKKDAAE

Samples

Sample ID Description Type Environment
1 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
13 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
14 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
15 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
16 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
17 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
22 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
23 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
24 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
25 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
26 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
27 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
31 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
32 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
33 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
34 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
35 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
36 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
38 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
39 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
40 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
41 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
42 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
43 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
47 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
48 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
49 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
50 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
51 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
52 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
53 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
54 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
55 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
56 3300020610 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
57 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
58 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
59 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
89 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
90 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
91 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
92 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
93 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
94 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
95 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
96 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
97 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
98 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
99 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
100 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
101 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
102 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
103 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
104 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
105 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
106 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
107 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
108 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
109 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
110 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
111 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
112 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
113 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
114 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
115 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
116 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
117 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
118 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
119 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
120 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
121 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
122 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
123 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
124 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
125 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
126 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
127 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
128 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
129 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
130 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
131 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
132 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
135 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
140 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
141 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
145 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
146 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
147 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
148 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
149 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
150 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
151 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
152 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
153 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
154 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
155 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
156 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
157 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
158 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
159 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
160 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
161 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
162 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
163 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
164 3300059477 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 50R_CW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
165 3300059490 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 7R_CD_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
166 3300059492 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 14R_AD_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
167 3300059493 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 19R_SW_T1_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
168 3300059504 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 23R_SD_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
169 3300059505 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 24R_SD_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
170 3300059507 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 98R_CW_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
171 3300059508 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 53R_CD_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
172 3300059509 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 54R_CD_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
173 3300059510 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 55R_CD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
174 3300059511 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 56R_CD_T2_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
175 3300059607 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 163R_SW_T3_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
176 3300059623 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 66R_SW_T2_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
177 3300059624 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 146R_CW_T3_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
178 3300059625 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 151R_CD_T3_R2 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
179 3300059626 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 173R_CD_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
180 3300059630 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 165R_SD_T3_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
181 3300059639 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 3R_CW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
182 3300059641 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 9R_AW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
183 3300059645 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 18R_SW_T1_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
184 3300059646 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 42R_SW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
185 3300059647 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 43R_SW_T1_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
186 3300059648 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 65R_SW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
187 3300059652 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 72R_SD_T2_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
188 3300059653 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 145R_CW_T3_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
189 3300059659 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 157R_AD_T3_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
190 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
191 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
192 2643221580 Devosia sp. Root635 Isolate Unclassified
193 2643221591 Devosia sp. Root685 Isolate Unclassified
194 2643221629 Devosia sp. Root105 Isolate Unclassified
195 2643221662 Devosia sp. Root413D1 Isolate Unclassified
196 2643221674 Devosia sp. Root436 Isolate Unclassified
197 2932401849 Devosia sp. 2618 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.42
Metatranscriptomes 14.97
Isolates 1.6

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.02
Nodule 0
Rhizoplane 1.34
Rhizosphere 85.29
Stem 0
Stem Tuber 0
Unclassified 6.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500604_0000494 3300053151 Bacteria 10893
2 JGI24735J21928_10099973 3300002067 Bacteria 833
3 JGI25165J46597_1007027 3300003214 Bacteria 1920
4 rootL2_10085702 3300003322 Bacteria 1993
5 Ga0070658_10022740 3300005327 Bacteria 5031
6 Ga0070658_10355909 3300005327 Bacteria 1253
7 Ga0070683_100082119 3300005329 Bacteria 3018
8 Ga0070682_100557653 3300005337 Bacteria 898
9 Ga0068868_100203265 3300005338 Bacteria 1652
10 Ga0070660_100060531 3300005339 Bacteria 2938
11 Ga0070660_100282850 3300005339 Bacteria 1357
12 Ga0070660_100436175 3300005339 Bacteria 1086
13 Ga0070661_100001841 3300005344 Bacteria 14681
14 Ga0070661_100024110 3300005344 Bacteria 4364
15 Ga0070661_100036714 3300005344 Bacteria 3562
16 Ga0070661_100111752 3300005344 Bacteria 2041
17 Ga0070661_100837047 3300005344 Bacteria 757
18 Ga0070668_100077697 3300005347 Bacteria 2595
19 Ga0070668_100594134 3300005347 Bacteria 968
20 Ga0070668_101224946 3300005347 Bacteria 681
21 Ga0070675_100977651 3300005354 Bacteria 777
22 Ga0070674_100014976 3300005356 Bacteria 4830
23 Ga0070674_100555513 3300005356 Bacteria 964
24 Ga0070673_101059024 3300005364 Bacteria 757
25 Ga0070659_100028402 3300005366 Bacteria 4319
26 Ga0070659_100419082 3300005366 Bacteria 1132
27 Ga0070659_101056452 3300005366 Bacteria 714
28 Ga0070667_101093861 3300005367 Unclassified 745
29 Ga0070663_100156466 3300005455 Bacteria 1751
30 Ga0070663_100306125 3300005455 Bacteria 1274
31 Ga0070663_101388565 3300005455 Bacteria 622
32 Ga0070678_100093475 3300005456 Bacteria 2312
33 Ga0068867_100721506 3300005459 Bacteria 881
34 Ga0070684_100616145 3300005535 Bacteria 1009
35 Ga0068853_100000620 3300005539 Bacteria 24357
36 Ga0068853_100000752 3300005539 Bacteria 22475
37 Ga0068853_100049422 3300005539 Bacteria 3614
38 Ga0068853_100062717 3300005539 Bacteria 3217
39 Ga0068853_100592141 3300005539 Bacteria 1053
40 Ga0068853_100730691 3300005539 Bacteria 945
41 Ga0070672_100047472 3300005543 Bacteria 3332
42 Ga0070665_100019491 3300005548 Bacteria 6810
43 Ga0070665_100032054 3300005548 Bacteria 5290
44 Ga0068855_100086915 3300005563 Bacteria 3615
45 Ga0068855_100108914 3300005563 Bacteria 3181
46 Ga0068855_100285417 3300005563 Bacteria 1831
47 Ga0068855_100642105 3300005563 Bacteria 1141
48 Ga0070664_100168354 3300005564 Bacteria 1943
49 Ga0068857_100027640 3300005577 Bacteria 5004
50 Ga0068857_100179454 3300005577 Bacteria 1927
51 Ga0068854_100030361 3300005578 Bacteria 3748
52 Ga0068854_100062454 3300005578 Bacteria 2701
53 Ga0068854_100912089 3300005578 Bacteria 773
54 Ga0068856_100038202 3300005614 Bacteria 4713
55 Ga0068856_100172360 3300005614 Unclassified 2176
56 Ga0068856_100631610 3300005614 Bacteria 1092
57 Ga0068852_100027626 3300005616 Bacteria 4627
58 Ga0068852_100080946 3300005616 Bacteria 2881
59 Ga0068852_100627124 3300005616 Bacteria 1081
60 Ga0068851_10006352 3300005834 Bacteria 5393
61 Ga0068851_10055960 3300005834 Bacteria 2010
62 Ga0075365_10272731 3300006038 Bacteria 1190
63 Ga0075363_100036480 3300006048 Bacteria 2578
64 Ga0075364_10049839 3300006051 Bacteria 2732
65 Ga0075364_10086846 3300006051 Bacteria 2072
66 Ga0075364_10408859 3300006051 Bacteria 926
67 Ga0075362_10008070 3300006177 Bacteria 4013
68 Ga0075362_10013625 3300006177 Bacteria 3259
69 Ga0075366_10038382 3300006195 Bacteria 2828
70 Ga0075366_10234751 3300006195 Bacteria 1118
71 Ga0097621_100270916 3300006237 Bacteria 1492
72 Ga0075370_10107942 3300006353 Bacteria 1615
73 Ga0075370_10430204 3300006353 Unclassified 793
74 Ga0068871_100250098 3300006358 Bacteria 1544
75 Ga0068865_100157815 3300006881 Unclassified 1727
76 Ga0105240_10080465 3300009093 Bacteria 4007
77 Ga0105240_10147561 3300009093 Bacteria 2805
78 Ga0105240_10502119 3300009093 Bacteria 1348
79 Ga0105240_11881155 3300009093 Bacteria 623
80 Ga0105245_10312588 3300009098 Bacteria 1545
81 Ga0105241_10095307 3300009174 Bacteria 2356
82 Ga0105241_10122323 3300009174 Bacteria 2097
83 Ga0105241_10527034 3300009174 Bacteria 1057
84 Ga0105242_10360410 3300009176 Bacteria 1346
85 Ga0105237_10001727 3300009545 Bacteria 28221
86 Ga0105237_10091116 3300009545 Bacteria 3038
87 Ga0105238_10153794 3300009551 Bacteria 2275
88 Ga0105238_10463986 3300009551 Bacteria 1264
89 Ga0105239_10006069 3300010375 Bacteria 14067
90 Ga0105239_10057632 3300010375 Bacteria 4261
91 Ga0105239_10674105 3300010375 Bacteria 1182
92 Ga0105246_10445391 3300011119 Bacteria 1087
93 Ga0157371_10039670 3300013102 Bacteria 3367
94 Ga0157370_10055691 3300013104 Bacteria 3765
95 Ga0157370_10214727 3300013104 Bacteria 1782
96 Ga0157370_10225962 3300013104 Bacteria 1733
97 Ga0157370_10611650 3300013104 Bacteria 997
98 Ga0157370_10814969 3300013104 Unclassified 849
99 Ga0157369_10027256 3300013105 Bacteria 6336
100 Ga0157369_10065429 3300013105 Bacteria 3912
101 Ga0157369_10514129 3300013105 Bacteria 1239
102 Ga0157374_10003753 3300013296 Bacteria 12765
103 Ga0157374_10136545 3300013296 Bacteria 2378
104 Ga0157374_10315631 3300013296 Bacteria 1548
105 Ga0157374_10857851 3300013296 Bacteria 925
106 Ga0157372_10156100 3300013307 Bacteria 2636
107 Ga0157372_10876835 3300013307 Bacteria 1041
108 Ga0157372_10989934 3300013307 Bacteria 974
109 Ga0163163_10184294 3300014325 Bacteria 2135
110 Ga0157376_10286402 3300014969 Unclassified 1554
111 Ga0206355_1379498 3300020076 Unclassified 911
112 Ga0154015_1020810 3300020610 Bacteria 723
113 Ga0207427_103030 3300025231 Bacteria 3861
114 Ga0209233_1016744 3300025261 Bacteria 2013
115 Ga0209051_1100462 3300025303 Bacteria 779
116 Ga0207656_10003248 3300025321 Bacteria 5566
117 Ga0207656_10151697 3300025321 Unclassified 1098
118 Ga0207647_10157808 3300025904 Bacteria 1324
119 Ga0207705_10004343 3300025909 Bacteria 10725
120 Ga0207705_10130333 3300025909 Bacteria 1871
121 Ga0207705_10217224 3300025909 Bacteria 1451
122 Ga0207654_10045856 3300025911 Bacteria 2490
123 Ga0207695_10356517 3300025913 Bacteria 1349
124 Ga0207671_10005723 3300025914 Bacteria 11339
125 Ga0207657_10016649 3300025919 Bacteria 7083
126 Ga0207657_10019330 3300025919 Bacteria 6473
127 Ga0207657_10026191 3300025919 Bacteria 5363
128 Ga0207649_10003565 3300025920 Bacteria 8506
129 Ga0207649_10029644 3300025920 Bacteria 3233
130 Ga0207649_10298963 3300025920 Bacteria 1176
131 Ga0207649_11019231 3300025920 Bacteria 652
132 Ga0207694_10510580 3300025924 Bacteria 1007
133 Ga0207644_10309964 3300025931 Bacteria 1274
134 Ga0207690_10079025 3300025932 Bacteria 2291
135 Ga0207690_10117288 3300025932 Bacteria 1927
136 Ga0207690_10173666 3300025932 Bacteria 1616
137 Ga0207706_10300375 3300025933 Bacteria 1399
138 Ga0207670_10103906 3300025936 Bacteria 2034
139 Ga0207669_10147569 3300025937 Bacteria 1642
140 Ga0207679_10146909 3300025945 Bacteria 1914
141 Ga0207667_10009291 3300025949 Bacteria 11600
142 Ga0207667_10057353 3300025949 Bacteria 4088
143 Ga0207667_10158675 3300025949 Bacteria 2327
144 Ga0207667_10241324 3300025949 Bacteria 1849
145 Ga0207668_10060160 3300025972 Bacteria 2665
146 Ga0207640_10061463 3300025981 Bacteria 2488
147 Ga0207677_10336180 3300026023 Bacteria 1260
148 Ga0207639_10000545 3300026041 Bacteria 25865
149 Ga0207639_10013300 3300026041 Bacteria 5756
150 Ga0207639_10158931 3300026041 Bacteria 1902
151 Ga0207639_10197371 3300026041 Bacteria 1723
152 Ga0207639_10785434 3300026041 Bacteria 887
153 Ga0207678_10151518 3300026067 Bacteria 1980
154 Ga0207678_10260096 3300026067 Bacteria 1487
155 Ga0207678_10540456 3300026067 Unclassified 1019
156 Ga0207702_10046844 3300026078 Bacteria 3641
157 Ga0207702_10057474 3300026078 Bacteria 3306
158 Ga0207702_10110493 3300026078 Bacteria 2443
159 Ga0207648_10747956 3300026089 Bacteria 908
160 Ga0207674_10003842 3300026116 Bacteria 18310
161 Ga0207674_10343910 3300026116 Bacteria 1442
162 Ga0207683_10118898 3300026121 Bacteria 2371
163 Ga0207698_10051891 3300026142 Bacteria 3138
164 Ga0209974_10043418 3300027876 Bacteria 1498
165 Ga0209974_10071292 3300027876 Bacteria 1186
166 Ga0268266_10000732 3300028379 Bacteria 44041
167 Ga0268266_10181942 3300028379 Bacteria 1914
168 Ga0265338_10051825 3300028800 Bacteria 3690
169 Ga0265340_10062247 3300031247 Bacteria 1783
170 Ga0265340_10160267 3300031247 Bacteria 1022
171 Ga0265331_10073585 3300031250 Bacteria 1595
172 Ga0265316_10063026 3300031344 Bacteria 2876
173 Ga0265313_10000390 3300031595 Bacteria 47314
174 Ga0265314_10032004 3300031711 Bacteria 3875
175 Ga0265314_10116483 3300031711 Bacteria 1689
176 Ga0265342_10041760 3300031712 Bacteria 2774
177 Ga0316576_10482647 3300031727 Bacteria 913
178 Ga0307516_10522824 3300031730 Bacteria 840
179 Ga0307405_10932269 3300031731 Bacteria 736
180 Ga0307413_10173661 3300031824 Unclassified 1528
181 Ga0307413_10212092 3300031824 Bacteria 1407
182 Ga0307413_10255515 3300031824 Bacteria 1303
183 Ga0307413_10305118 3300031824 Bacteria 1209
184 Ga0307410_11100915 3300031852 Bacteria 689
185 Ga0307407_10210807 3300031903 Unclassified 1308
186 Ga0307412_11066242 3300031911 Bacteria 717
187 Ga0307409_100319214 3300031995 Bacteria 1453
188 Ga0307416_101373383 3300032002 Bacteria 812
189 Ga0307414_10046510 3300032004 Bacteria 2979
190 Ga0307414_10092262 3300032004 Bacteria 2254
191 Ga0307414_10189932 3300032004 Bacteria 1661
192 Ga0307414_10713931 3300032004 Bacteria 908
193 Ga0307414_10866649 3300032004 Bacteria 826
194 Ga0307411_10815681 3300032005 Bacteria 823
195 Ga0307415_100437385 3300032126 Unclassified 1127
196 Ga0373939_0038912 3300035114 Bacteria 1421
197 Ga0373946_0162951 3300035171 Bacteria 1048
198 Ga0316574_0146505 3300035398 Bacteria 1522
199 Ga0373925_0429279 3300037068 Unclassified 1080
200 Ga0395899_0012160 3300037312 Bacteria 6592
201 Ga0395899_0306782 3300037312 Bacteria 1072
202 Ga0395900_0291808 3300037418 Bacteria 1619
203 Ga0395900_0342720 3300037418 Bacteria 1469
204 Ga0395900_0479057 3300037418 Bacteria 1197
205 Ga0395900_0569136 3300037418 Bacteria 1076
206 Ga0395898_0047613 3300037466 Bacteria 4207
207 Ga0395898_0080629 3300037466 Bacteria 3138
208 Ga0395898_0257947 3300037466 Bacteria 1662
209 Ga0395901_0030152 3300038443 Bacteria 5587
210 Ga0395901_0271225 3300038443 Bacteria 1765
211 Ga0395901_0511328 3300038443 Bacteria 1221
212 Ga0395901_0898283 3300038443 Bacteria 868
213 Ga0395901_0925700 3300038443 Bacteria 852
214 Ga0400489_70278 3300039093 Bacteria 3299
215 Ga0439465_0028463 3300041413 Bacteria 1772
216 Ga0439465_0030267 3300041413 Bacteria 1722
217 Ga0439465_0120316 3300041413 Bacteria 920
218 Ga0451791_0695821 3300041451 Bacteria 990
219 Ga0451791_1200240 3300041451 Unclassified 610
220 Ga0451791_1532189 3300041451 Bacteria 999
221 Ga0451797_0692600 3300041453 Bacteria 1244
222 Ga0439431_0092604 3300041997 Unclassified 825
223 Ga0439432_081613 3300042006 Bacteria 979
224 Ga0466965_0309771 3300044683 Unclassified 858
225 Ga0496108_0342840 3300048911 Bacteria 1304
226 Ga0496118_0171764 3300048921 Bacteria 1323
227 Ga0496121_0031642 3300048924 Bacteria 4829
228 Ga0496121_0083828 3300048924 Bacteria 2515
229 Ga0496121_0088372 3300048924 Bacteria 2430
230 Ga0496122_0438097 3300048925 Bacteria 652
231 Ga0496124_0267891 3300048927 Bacteria 1253
232 Ga0496124_0309512 3300048927 Bacteria 1137
233 Ga0496124_0331090 3300048927 Bacteria 1086
234 Ga0496125_0001969 3300048928 Bacteria 27945
235 Ga0496125_0077170 3300048928 Bacteria 2570
236 Ga0496126_0050597 3300048929 Bacteria 3785
237 Ga0496126_0610953 3300048929 Bacteria 858
238 Ga0501306_058960 3300049127 Bacteria 629
239 Ga0501031_0032647 3300049568 Bacteria 3394
240 Ga0501031_0202510 3300049568 Bacteria 1295
241 Ga0501032_0016162 3300049569 Bacteria 5252
242 Ga0501032_0273492 3300049569 Bacteria 1094
243 Ga0501033_0011099 3300049570 Bacteria 6900
244 Ga0501033_0085803 3300049570 Bacteria 2305
245 Ga0501033_0146748 3300049570 Bacteria 1703
246 Ga0501033_0195292 3300049570 Bacteria 1447
247 Ga0501034_0028534 3300049571 Bacteria 5680
248 Ga0501034_0035926 3300049571 Bacteria 5024
249 Ga0501034_0042834 3300049571 Bacteria 4582
250 Ga0501034_0099209 3300049571 Bacteria 2908
251 Ga0501034_0099293 3300049571 Bacteria 2906
252 Ga0501034_0133199 3300049571 Bacteria 2468
253 Ga0501034_0187436 3300049571 Bacteria 2031
254 Ga0501034_0321485 3300049571 Bacteria 1480
255 Ga0501034_0328054 3300049571 Bacteria 1462
256 Ga0501034_0474212 3300049571 Bacteria 1167
257 Ga0501034_1016423 3300049571 Bacteria 712
258 Ga0501036_0018822 3300049572 Bacteria 5791
259 Ga0501036_0495521 3300049572 Bacteria 1017
260 Ga0501036_0657725 3300049572 Bacteria 867
261 Ga0501037_0030907 3300049573 Bacteria 3955
262 Ga0501037_0069460 3300049573 Bacteria 2564
263 Ga0501037_0096718 3300049573 Bacteria 2134
264 Ga0501037_0117377 3300049573 Bacteria 1915
265 Ga0501037_0629878 3300049573 Bacteria 718
266 Ga0501038_0023277 3300049574 Bacteria 5540
267 Ga0501038_1303332 3300049574 Bacteria 524
268 Ga0501039_0085546 3300049575 Bacteria 2456
269 Ga0501039_0194745 3300049575 Bacteria 1593
270 Ga0501040_0249917 3300049576 Bacteria 1265
271 Ga0501041_0372120 3300049577 Bacteria 904
272 Ga0501042_0733467 3300049578 Bacteria 719
273 Ga0501043_0022381 3300049579 Bacteria 4958
274 Ga0501043_0050019 3300049579 Bacteria 3285
275 Ga0501043_0072012 3300049579 Bacteria 2715
276 Ga0501043_0267457 3300049579 Bacteria 1313
277 Ga0501046_0056615 3300049580 Bacteria 3077
278 Ga0501047_0016355 3300049581 Bacteria 7080
279 Ga0501047_0050744 3300049581 Bacteria 4006
280 Ga0501047_0481787 3300049581 Bacteria 1068
281 Ga0501047_0578869 3300049581 Bacteria 946
282 Ga0501067_0194484 3300049583 Bacteria 1130
283 Ga0501068_0092115 3300049584 Unclassified 1871
284 Ga0501070_0019699 3300049586 Bacteria 5658
285 Ga0501070_0035110 3300049586 Bacteria 4190
286 Ga0501070_0195089 3300049586 Bacteria 1663
287 Ga0501070_0552829 3300049586 Bacteria 921
288 Ga0501073_0066053 3300049589 Bacteria 2522
289 Ga0501073_0312756 3300049589 Bacteria 1084
290 Ga0501074_0608262 3300049590 Bacteria 773
291 Ga0501225_0083700 3300049705 Bacteria 918
292 Ga0501080_0018677 3300049742 Bacteria 6417
293 Ga0501035_0110475 3300049822 Bacteria 2409
294 Ga0501035_0116024 3300049822 Bacteria 2343
295 Ga0501035_0128214 3300049822 Bacteria 2213
296 Ga0501035_0218420 3300049822 Bacteria 1628
297 Ga0501044_0015125 3300049823 Bacteria 8316
298 Ga0501044_0092237 3300049823 Bacteria 3055
299 Ga0501044_0221120 3300049823 Bacteria 1844
300 Ga0501044_0570131 3300049823 Bacteria 1027
301 nmdc:mga03n38_497261_c1 3300050490 Unclassified 684
302 nmdc:mga00v17_169337_c1 3300050491 Bacteria 1408
303 nmdc:mga00v17_41184_c1 3300050491 Bacteria 2773
304 nmdc:mga0yw44_566821_c1 3300050492 Bacteria 771
305 nmdc:mga0k408_133050_c1 3300050493 Bacteria 1477
306 nmdc:mga07m45_125327_c1 3300050496 Bacteria 1485
307 nmdc:mga07m45_242815_c1 3300050496 Unclassified 1048
308 Ga0500562_012887 3300053108 Bacteria 2129
309 Ga0500595_053541 3300053119 Bacteria 1242
310 Ga0500559_0200595 3300053136 Bacteria 941
311 Ga0500568_0034800 3300053139 Bacteria 2059
312 Ga0500616_0017995 3300053153 Bacteria 3999
313 Ga0500634_0000011 3300053161 Bacteria 133329
314 Ga0500634_0000030 3300053161 Bacteria 76925
315 Ga0587084_038548 3300059477 Bacteria 802
316 Ga0587084_043357 3300059477 Bacteria 772
317 Ga0587066_040163 3300059490 Bacteria 878
318 Ga0587073_0117187 3300059492 Bacteria 714
319 Ga0587077_000619 3300059493 Bacteria 3219
320 Ga0587077_000897 3300059493 Bacteria 2927
321 Ga0587077_028840 3300059493 Bacteria 1042
322 Ga0587077_073704 3300059493 Bacteria 768
323 Ga0587082_002146 3300059504 Bacteria 2179
324 Ga0587082_055374 3300059504 Bacteria 768
325 Ga0587083_0076730 3300059505 Bacteria 788
326 Ga0587083_0168756 3300059505 Bacteria 604
327 Ga0587086_034206 3300059507 Bacteria 761
328 Ga0587088_022273 3300059508 Bacteria 1067
329 Ga0587088_100617 3300059508 Bacteria 645
330 Ga0587089_056623 3300059509 Bacteria 640
331 Ga0587089_062492 3300059509 Bacteria 618
332 Ga0587090_022666 3300059510 Bacteria 993
333 Ga0587090_051655 3300059510 Bacteria 755
334 Ga0587090_075483 3300059510 Bacteria 666
335 Ga0587091_041442 3300059511 Bacteria 909
336 Ga0587091_126573 3300059511 Unclassified 626
337 Ga0587125_008368 3300059607 Bacteria 1025
338 Ga0587101_000896 3300059623 Bacteria 2376
339 Ga0587101_023709 3300059623 Bacteria 905
340 Ga0587109_030193 3300059624 Bacteria 1024
341 Ga0587109_089808 3300059624 Bacteria 692
342 Ga0587113_022676 3300059625 Bacteria 670
343 Ga0587115_018821 3300059626 Bacteria 944
344 Ga0587128_035637 3300059630 Bacteria 847
345 Ga0587128_093419 3300059630 Bacteria 620
346 Ga0587128_101787 3300059630 Bacteria 603
347 Ga0587062_000324 3300059639 Bacteria 3143
348 Ga0587062_016788 3300059639 Bacteria 994
349 Ga0587068_000816 3300059641 Bacteria 3155
350 Ga0587068_057438 3300059641 Bacteria 742
351 Ga0587076_057088 3300059645 Bacteria 777
352 Ga0587076_118256 3300059645 Bacteria 611
353 Ga0587078_020803 3300059646 Bacteria 828
354 Ga0587078_038132 3300059646 Unclassified 671
355 Ga0587079_056782 3300059647 Unclassified 837
356 Ga0587079_152688 3300059647 Bacteria 598
357 Ga0587100_005754 3300059648 Bacteria 933
358 Ga0587107_036964 3300059652 Bacteria 771
359 Ga0587108_000814 3300059653 Bacteria 1740
360 Ga0587108_013069 3300059653 Bacteria 725
361 Ga0587120_024645 3300059659 Unclassified 589
362 Ga0587111_0030485 3300060346 Bacteria 1098
363 Ga0587111_0037720 3300060346 Bacteria 1017
364 Ga0587111_0057863 3300060346 Unclassified 873
365 Ga0587111_0066881 3300060346 Bacteria 830
366 Ga0587111_0158904 3300060346 Bacteria 613
367 Ga0587111_0177238 3300060346 Bacteria 590
368 Ga0501082_0611359 3300060353 Bacteria 954
369 2643910038 2643221580 Bacteria 3816678
370 2643964215 2643221591 Bacteria 4397626
371 2644166725 2643221629 Bacteria 5850260
372 2644347703 2643221662 Bacteria 5851492
373 2644413813 2643221674 Bacteria 3919126
374 2932404108 2932401849 Bacteria 4262978
375 Ga0500604_0000494
376 JGI24735J21928_10099973
377 JGI25165J46597_1007027
378 rootL2_10085702
379 Ga0070658_10022740
380 Ga0070658_10355909
381 Ga0070683_100082119
382 Ga0070682_100557653
383 Ga0068868_100203265
384 Ga0070660_100060531
385 Ga0070660_100282850
386 Ga0070660_100436175
387 Ga0070661_100001841
388 Ga0070661_100024110
389 Ga0070661_100036714
390 Ga0070661_100111752
391 Ga0070661_100837047
392 Ga0070668_100077697
393 Ga0070668_100594134
394 Ga0070668_101224946
395 Ga0070675_100977651
396 Ga0070674_100014976
397 Ga0070674_100555513
398 Ga0070673_101059024
399 Ga0070659_100028402
400 Ga0070659_100419082
401 Ga0070659_101056452
402 Ga0070667_101093861
403 Ga0070663_100156466
404 Ga0070663_100306125
405 Ga0070663_101388565
406 Ga0070678_100093475
407 Ga0068867_100721506
408 Ga0070684_100616145
409 Ga0068853_100000620
410 Ga0068853_100000752
411 Ga0068853_100049422
412 Ga0068853_100062717
413 Ga0068853_100592141
414 Ga0068853_100730691
415 Ga0070672_100047472
416 Ga0070665_100019491
417 Ga0070665_100032054
418 Ga0068855_100086915
419 Ga0068855_100108914
420 Ga0068855_100285417
421 Ga0068855_100642105
422 Ga0070664_100168354
423 Ga0068857_100027640
424 Ga0068857_100179454
425 Ga0068854_100030361
426 Ga0068854_100062454
427 Ga0068854_100912089
428 Ga0068856_100038202
429 Ga0068856_100172360
430 Ga0068856_100631610
431 Ga0068852_100027626
432 Ga0068852_100080946
433 Ga0068852_100627124
434 Ga0068851_10006352
435 Ga0068851_10055960
436 Ga0075365_10272731
437 Ga0075363_100036480
438 Ga0075364_10049839
439 Ga0075364_10086846
440 Ga0075364_10408859
441 Ga0075362_10008070
442 Ga0075362_10013625
443 Ga0075366_10038382
444 Ga0075366_10234751
445 Ga0097621_100270916
446 Ga0075370_10107942
447 Ga0075370_10430204
448 Ga0068871_100250098
449 Ga0068865_100157815
450 Ga0105240_10080465
451 Ga0105240_10147561
452 Ga0105240_10502119
453 Ga0105240_11881155
454 Ga0105245_10312588
455 Ga0105241_10095307
456 Ga0105241_10122323
457 Ga0105241_10527034
458 Ga0105242_10360410
459 Ga0105237_10001727
460 Ga0105237_10091116
461 Ga0105238_10153794
462 Ga0105238_10463986
463 Ga0105239_10006069
464 Ga0105239_10057632
465 Ga0105239_10674105
466 Ga0105246_10445391
467 Ga0157371_10039670
468 Ga0157370_10055691
469 Ga0157370_10214727
470 Ga0157370_10225962
471 Ga0157370_10611650
472 Ga0157370_10814969
473 Ga0157369_10027256
474 Ga0157369_10065429
475 Ga0157369_10514129
476 Ga0157374_10003753
477 Ga0157374_10136545
478 Ga0157374_10315631
479 Ga0157374_10857851
480 Ga0157372_10156100
481 Ga0157372_10876835
482 Ga0157372_10989934
483 Ga0163163_10184294
484 Ga0157376_10286402
485 Ga0206355_1379498
486 Ga0154015_1020810
487 Ga0207427_103030
488 Ga0209233_1016744
489 Ga0209051_1100462
490 Ga0207656_10003248
491 Ga0207656_10151697
492 Ga0207647_10157808
493 Ga0207705_10004343
494 Ga0207705_10130333
495 Ga0207705_10217224
496 Ga0207654_10045856
497 Ga0207695_10356517
498 Ga0207671_10005723
499 Ga0207657_10016649
500 Ga0207657_10019330
501 Ga0207657_10026191
502 Ga0207649_10003565
503 Ga0207649_10029644
504 Ga0207649_10298963
505 Ga0207649_11019231
506 Ga0207694_10510580
507 Ga0207644_10309964
508 Ga0207690_10079025
509 Ga0207690_10117288
510 Ga0207690_10173666
511 Ga0207706_10300375
512 Ga0207670_10103906
513 Ga0207669_10147569
514 Ga0207679_10146909
515 Ga0207667_10009291
516 Ga0207667_10057353
517 Ga0207667_10158675
518 Ga0207667_10241324
519 Ga0207668_10060160
520 Ga0207640_10061463
521 Ga0207677_10336180
522 Ga0207639_10000545
523 Ga0207639_10013300
524 Ga0207639_10158931
525 Ga0207639_10197371
526 Ga0207639_10785434
527 Ga0207678_10151518
528 Ga0207678_10260096
529 Ga0207678_10540456
530 Ga0207702_10046844
531 Ga0207702_10057474
532 Ga0207702_10110493
533 Ga0207648_10747956
534 Ga0207674_10003842
535 Ga0207674_10343910
536 Ga0207683_10118898
537 Ga0207698_10051891
538 Ga0209974_10043418
539 Ga0209974_10071292
540 Ga0268266_10000732
541 Ga0268266_10181942
542 Ga0265338_10051825
543 Ga0265340_10062247
544 Ga0265340_10160267
545 Ga0265331_10073585
546 Ga0265316_10063026
547 Ga0265313_10000390
548 Ga0265314_10032004
549 Ga0265314_10116483
550 Ga0265342_10041760
551 Ga0316576_10482647
552 Ga0307516_10522824
553 Ga0307405_10932269
554 Ga0307413_10173661
555 Ga0307413_10212092
556 Ga0307413_10255515
557 Ga0307413_10305118
558 Ga0307410_11100915
559 Ga0307407_10210807
560 Ga0307412_11066242
561 Ga0307409_100319214
562 Ga0307416_101373383
563 Ga0307414_10046510
564 Ga0307414_10092262
565 Ga0307414_10189932
566 Ga0307414_10713931
567 Ga0307414_10866649
568 Ga0307411_10815681
569 Ga0307415_100437385
570 Ga0373939_0038912
571 Ga0373946_0162951
572 Ga0316574_0146505
573 Ga0373925_0429279
574 Ga0395899_0012160
575 Ga0395899_0306782
576 Ga0395900_0291808
577 Ga0395900_0342720
578 Ga0395900_0479057
579 Ga0395900_0569136
580 Ga0395898_0047613
581 Ga0395898_0080629
582 Ga0395898_0257947
583 Ga0395901_0030152
584 Ga0395901_0271225
585 Ga0395901_0511328
586 Ga0395901_0898283
587 Ga0395901_0925700
588 Ga0400489_70278
589 Ga0439465_0028463
590 Ga0439465_0030267
591 Ga0439465_0120316
592 Ga0451791_0695821
593 Ga0451791_1200240
594 Ga0451791_1532189
595 Ga0451797_0692600
596 Ga0439431_0092604
597 Ga0439432_081613
598 Ga0466965_0309771
599 Ga0496108_0342840
600 Ga0496118_0171764
601 Ga0496121_0031642
602 Ga0496121_0083828
603 Ga0496121_0088372
604 Ga0496122_0438097
605 Ga0496124_0267891
606 Ga0496124_0309512
607 Ga0496124_0331090
608 Ga0496125_0001969
609 Ga0496125_0077170
610 Ga0496126_0050597
611 Ga0496126_0610953
612 Ga0501306_058960
613 Ga0501031_0032647
614 Ga0501031_0202510
615 Ga0501032_0016162
616 Ga0501032_0273492
617 Ga0501033_0011099
618 Ga0501033_0085803
619 Ga0501033_0146748
620 Ga0501033_0195292
621 Ga0501034_0028534
622 Ga0501034_0035926
623 Ga0501034_0042834
624 Ga0501034_0099209
625 Ga0501034_0099293
626 Ga0501034_0133199
627 Ga0501034_0187436
628 Ga0501034_0321485
629 Ga0501034_0328054
630 Ga0501034_0474212
631 Ga0501034_1016423
632 Ga0501036_0018822
633 Ga0501036_0495521
634 Ga0501036_0657725
635 Ga0501037_0030907
636 Ga0501037_0069460
637 Ga0501037_0096718
638 Ga0501037_0117377
639 Ga0501037_0629878
640 Ga0501038_0023277
641 Ga0501038_1303332
642 Ga0501039_0085546
643 Ga0501039_0194745
644 Ga0501040_0249917
645 Ga0501041_0372120
646 Ga0501042_0733467
647 Ga0501043_0022381
648 Ga0501043_0050019
649 Ga0501043_0072012
650 Ga0501043_0267457
651 Ga0501046_0056615
652 Ga0501047_0016355
653 Ga0501047_0050744
654 Ga0501047_0481787
655 Ga0501047_0578869
656 Ga0501067_0194484
657 Ga0501068_0092115
658 Ga0501070_0019699
659 Ga0501070_0035110
660 Ga0501070_0195089
661 Ga0501070_0552829
662 Ga0501073_0066053
663 Ga0501073_0312756
664 Ga0501074_0608262
665 Ga0501225_0083700
666 Ga0501080_0018677
667 Ga0501035_0110475
668 Ga0501035_0116024
669 Ga0501035_0128214
670 Ga0501035_0218420
671 Ga0501044_0015125
672 Ga0501044_0092237
673 Ga0501044_0221120
674 Ga0501044_0570131
675 nmdc:mga03n38_497261_c1
676 nmdc:mga00v17_169337_c1
677 nmdc:mga00v17_41184_c1
678 nmdc:mga0yw44_566821_c1
679 nmdc:mga0k408_133050_c1
680 nmdc:mga07m45_125327_c1
681 nmdc:mga07m45_242815_c1
682 Ga0500562_012887
683 Ga0500595_053541
684 Ga0500559_0200595
685 Ga0500568_0034800
686 Ga0500616_0017995
687 Ga0500634_0000011
688 Ga0500634_0000030
689 Ga0587084_038548
690 Ga0587084_043357
691 Ga0587066_040163
692 Ga0587073_0117187
693 Ga0587077_000619
694 Ga0587077_000897
695 Ga0587077_028840
696 Ga0587077_073704
697 Ga0587082_002146
698 Ga0587082_055374
699 Ga0587083_0076730
700 Ga0587083_0168756
701 Ga0587086_034206
702 Ga0587088_022273
703 Ga0587088_100617
704 Ga0587089_056623
705 Ga0587089_062492
706 Ga0587090_022666
707 Ga0587090_051655
708 Ga0587090_075483
709 Ga0587091_041442
710 Ga0587091_126573
711 Ga0587125_008368
712 Ga0587101_000896
713 Ga0587101_023709
714 Ga0587109_030193
715 Ga0587109_089808
716 Ga0587113_022676
717 Ga0587115_018821
718 Ga0587128_035637
719 Ga0587128_093419
720 Ga0587128_101787
721 Ga0587062_000324
722 Ga0587062_016788
723 Ga0587068_000816
724 Ga0587068_057438
725 Ga0587076_057088
726 Ga0587076_118256
727 Ga0587078_020803
728 Ga0587078_038132
729 Ga0587079_056782
730 Ga0587079_152688
731 Ga0587100_005754
732 Ga0587107_036964
733 Ga0587108_000814
734 Ga0587108_013069
735 Ga0587120_024645
736 Ga0587111_0030485
737 Ga0587111_0037720
738 Ga0587111_0057863
739 Ga0587111_0066881
740 Ga0587111_0158904
741 Ga0587111_0177238
742 Ga0501082_0611359
743 2643910038
744 2643964215
745 2644166725
746 2644347703
747 2644413813
748 2932404108

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03551

PadR

Transcriptional regulator PadR-like family

15

90

0.94

PF13601

HTH_34

Winged helix DNA-binding domain

11

94

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
5c39-assembly1.cif.gz_B crystal structure of a designed mn binding peptide 0.9433 115 162
7s5k-assembly1.cif.gz_B m. xanthus ferritin-like protein encb 0.9395 113 159
1mft-assembly1.cif.gz_A crystal structure of four-helix bundle model 0.9328 115 162
4l0r-assembly1.cif.gz_A crystal structure of fgf2-interacting protein from homo sapiens. northeast structural genomics consortium target hr9027a. 0.9277 109 167
4ilo-assembly1.cif.gz_A 2.12a resolution structure of ct398 from chlamydia trachomatis 0.9252 109 169
ID Description Score Start End Superfamily
4fxdB06 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;B family DNA polymerase, finger domain 0.9857 116 159 1.10.287.690
af_Q9CXW3_1_48_4.10.860.10 Few Secondary Structures;Irregular;DNA Excision Repair, Uvrb; Chain A;UVR domain 0.9782 120 162 4.10.860.10
4fvmA06 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;B family DNA polymerase, finger domain 0.9731 116 159 1.10.287.690
5c39B00 Mainly Alpha;Up-down Bundle;Single alpha-helices involved in coiled-coils or other helix-helix interfaces;Immunoglobulin FC, subunit C 0.9433 115 162 1.20.5.420
af_O50432_1_88_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9414 1 89 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A3D4QFF6-F1-model_v4 PadR family transcriptional regulator 0.9657 1 73
AF-A0A3D4QFF6-F1-model_v4 PadR family transcriptional regulator 0.953 1 73
AF-A0A1M6F659-F1-model_v4 DNA-binding transcriptional regulator, PadR family 0.9118 1 85 GO:0003677
AF-A0A1I2P1G8-F1-model_v4 DNA-binding transcriptional regulator, PadR family 0.9008 3 85 GO:0003677
AF-I2PYF1-F1-model_v4 Putative transcriptional regulator 0.9002 3 85

Map