F424480

General Info

Members Datasets Scaffolds Average Seq Length
367 203 734 448

Family's Representative Sequence

Representative Sequence 3300047443|Ga0495687_003296|Ga0495687_003296_10109_11539
Length 476
Sequence VKLKKRKNVERKTYHVKQKNRCNQKIKSVESKSNRIVVLGAGESGAGAAYLAQQQGYEVFVSDFGPIADQYKKQLQDWNIRFEENQHTEEEILKAVEVVKSPGIPEKAPIVKKLREKNIPVISEIEFAGRYTNAKIIGITGSNGKTTTTSLTYHILKNAGLNVGLAGNIGKSFAYQVATEKFDTYVLELSSFMLDDMYEFKADIGVLLNITPDHLDRYEYKMENYVASKFRITQNQTADDYFIYCADDPETINGMETREFTAQQLPFSIKKKTTPGAYLENDNIIINTLKEHFTMSINELALQGKHNLYNSMASGIVAKVLELRNETIRESMGSFRNIEHRLEFVAKISGISFINDSKATNVNSTWYALESMTSDVVLILGGVDKGNDYNMLKDLVKQKVKAIVCLGKDNRRIHEAFDDVVDIIVNTFSAQEAAQVAYHLAKKGDTVLLSPACASFDLFKNYEDRGRQFKQAVKEL

Samples

Sample ID Description Type Environment
1 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300001915 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C7 Metagenome Rhizosphere
4 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
5 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
6 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
7 3300002772 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS Metagenome Endosphere
8 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
9 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
10 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
11 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
12 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
13 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
14 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
15 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
16 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
17 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
18 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
19 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
20 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
21 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
22 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
23 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
24 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
25 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
26 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
27 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
28 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
29 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
30 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
31 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
32 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
33 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
34 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
35 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
36 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
37 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
38 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
39 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
40 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
41 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
42 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
43 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
44 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
45 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
46 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
47 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
48 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
49 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
50 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
51 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
52 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
53 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
54 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
55 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
56 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
57 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
58 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
59 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
60 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
61 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
62 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
63 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
64 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
65 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
66 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
67 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
68 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
69 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
70 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
71 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
72 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
73 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
74 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
104 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
105 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
106 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
108 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
109 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
110 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
111 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
112 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
113 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
114 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
115 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
116 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
117 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
118 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
119 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
120 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
121 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
122 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
123 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
124 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
125 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
126 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
127 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
128 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
129 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
130 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
131 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
132 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
133 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
134 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
135 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
136 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
137 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
138 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
139 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
140 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
141 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
142 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
143 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
144 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
145 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
146 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
147 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
148 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
149 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
150 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
151 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
152 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
153 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
154 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
155 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
156 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
157 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
158 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
159 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
160 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
161 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
162 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
163 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
164 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
165 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
166 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
167 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
168 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
169 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
170 2643221600 Flavobacterium sp. Root186 Isolate Unclassified
171 2643221716 Flavobacterium sp. Root901 Isolate Unclassified
172 2721755487 Sphingobacterium sp. B29 Isolate Rhizosphere
173 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
174 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
175 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
176 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
177 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
178 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
179 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
180 2857627736 Pedobacter sp. R-74587 Isolate Unclassified
181 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
182 2881955468 Edaphocola flava HME-24 Isolate Rhizosphere
183 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
184 2890737413 Parapedobacter sp. SGR-10 Isolate Rhizosphere
185 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
186 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
187 2898713307 Sphingobacterium sp. SGG-5 Isolate Rhizosphere
188 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
189 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
190 2904555929 Flavobacterium sp. 1750 Isolate Rhizosphere
191 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
192 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
193 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
194 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
195 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
196 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
197 2958458903 Flavobacterium anhuiense RCM74 Isolate Rhizosphere
198 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
199 8054307821 Flavobacterium soyae SCIV07 Isolate Rhizosphere
200 8055419101 Flavobacterium tyrosinilyticum KCTC 42726 Isolate Rhizosphere
201 8055588893 Parapedobacter lycopersici KACC 18788 Isolate Rhizosphere
202 8055592153 Flavobacterium panacis DCY106 Isolate Rhizosphere
203 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.46
Metatranscriptomes 0
Isolates 9.54

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.45
Nodule 1.63
Rhizoplane 0.27
Rhizosphere 85.01
Stem 0
Stem Tuber 0
Unclassified 0.54

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495687_003296 3300047443 Bacteria 11866
2 SwRhRL2b_contig_1604448 2162886007 Bacteria 1950
3 SwRhRL2b_contig_1716529 2162886007 Bacteria 5732
4 JGI24741J21665_1009317 3300001915 Bacteria 1810
5 JGI24740J21852_10012200 3300001979 Bacteria 3245
6 JGI24737J22298_10003137 3300001990 Bacteria 5869
7 JGI25162J39368_1000137 3300002737 Bacteria 78951
8 JGI25162J39368_1003034 3300002737 Bacteria 5466
9 JGI25164J39214_1001191 3300002772 Bacteria 7095
10 JGI25165J46597_1001519 3300003214 Bacteria 11734
11 rootH1_10184238 3300003316 Bacteria 2200
12 rootH2_10001202 3300003320 Bacteria 51390
13 rootH2_10002321 3300003320 Bacteria 110257
14 rootH2_10047161 3300003320 Bacteria 19289
15 rootH2_10061904 3300003320 Bacteria 6378
16 rootL2_10012003 3300003322 Bacteria 1881
17 Ga0065714_10004227 3300005288 Bacteria 7515
18 Ga0065714_10077239 3300005288 Bacteria 2709
19 Ga0065704_10001950 3300005289 Bacteria 10735
20 Ga0065704_10072462 3300005289 Bacteria 8466
21 Ga0070658_10000200 3300005327 Bacteria 52651
22 Ga0070658_10006777 3300005327 Bacteria 9272
23 Ga0070658_10021029 3300005327 Bacteria 5226
24 Ga0070658_10034199 3300005327 Bacteria 4090
25 Ga0070658_10060993 3300005327 Bacteria 3072
26 Ga0070658_10165131 3300005327 Bacteria 1859
27 Ga0070658_10174075 3300005327 Bacteria 1809
28 Ga0070683_100060463 3300005329 Bacteria 3521
29 Ga0070683_100134141 3300005329 Bacteria 2344
30 Ga0070670_100059800 3300005331 Bacteria 3271
31 Ga0070680_100001641 3300005336 Bacteria 16354
32 Ga0070680_100043077 3300005336 Bacteria 3665
33 Ga0070682_100008151 3300005337 Bacteria 5908
34 Ga0068868_100036168 3300005338 Bacteria 3820
35 Ga0070660_100001037 3300005339 Bacteria 18678
36 Ga0070660_100025762 3300005339 Bacteria 4374
37 Ga0070660_100084430 3300005339 Bacteria 2496
38 Ga0070691_10001643 3300005341 Bacteria 9691
39 Ga0070671_100138870 3300005355 Bacteria 2050
40 Ga0070659_100239037 3300005366 Bacteria 1502
41 Ga0070667_100001670 3300005367 Bacteria 19832
42 Ga0070667_100061752 3300005367 Unclassified 3173
43 Ga0070663_100024660 3300005455 Bacteria 4052
44 Ga0070678_100021049 3300005456 Bacteria 4292
45 Ga0070662_100000013 3300005457 Bacteria 125019
46 Ga0070681_10022717 3300005458 Bacteria 6302
47 Ga0070681_10023940 3300005458 Bacteria 6148
48 Ga0070681_10058984 3300005458 Bacteria 3817
49 Ga0070681_10065338 3300005458 Bacteria 3607
50 Ga0068867_100000040 3300005459 Bacteria 78509
51 Ga0070679_100003410 3300005530 Bacteria 14554
52 Ga0070679_100011497 3300005530 Bacteria 8435
53 Ga0070679_100020299 3300005530 Bacteria 6475
54 Ga0070679_100058053 3300005530 Bacteria 3857
55 Ga0070679_100076429 3300005530 Bacteria 3338
56 Ga0068853_100107964 3300005539 Bacteria 2468
57 Ga0070665_100000010 3300005548 Bacteria 529545
58 Ga0070665_100175277 3300005548 Bacteria 2145
59 Ga0068855_100000204 3300005563 Bacteria 76041
60 Ga0068855_100000856 3300005563 Bacteria 37762
61 Ga0068855_100002404 3300005563 Bacteria 23090
62 Ga0068854_100050234 3300005578 Bacteria 2983
63 Ga0068854_100091404 3300005578 Bacteria 2265
64 Ga0068856_100000023 3300005614 Bacteria 141671
65 Ga0068856_100066539 3300005614 Bacteria 3560
66 Ga0068856_100117601 3300005614 Bacteria 2659
67 Ga0068852_100019848 3300005616 Bacteria 5331
68 Ga0068859_100005195 3300005617 Bacteria 13229
69 Ga0068859_100012109 3300005617 Bacteria 8669
70 Ga0068859_100156883 3300005617 Bacteria 2354
71 Ga0068866_10044023 3300005718 Bacteria 2231
72 Ga0068860_100002499 3300005843 Bacteria 19300
73 Ga0068860_100005282 3300005843 Bacteria 13106
74 Ga0068862_100006022 3300005844 Bacteria 10101
75 Ga0075366_10013071 3300006195 Bacteria 4721
76 Ga0097621_100000011 3300006237 Bacteria 111116
77 Ga0097621_100002238 3300006237 Bacteria 13249
78 Ga0068871_100000083 3300006358 Bacteria 53417
79 Ga0068871_100006953 3300006358 Bacteria 8060
80 Ga0068865_100000335 3300006881 Bacteria 25989
81 Ga0097620_100005195 3300006931 Bacteria 13229
82 Ga0097620_100156896 3300006931 Bacteria 2354
83 Ga0099824_1000146 3300006942 Bacteria 63004
84 Ga0079104_1000126 3300006946 Bacteria 109126
85 Ga0099826_10000374 3300006948 Bacteria 20771
86 Ga0105251_10055761 3300009011 Bacteria 1873
87 Ga0105240_10000219 3300009093 Bacteria 115431
88 Ga0105240_10001434 3300009093 Bacteria 40792
89 Ga0105240_10043607 3300009093 Bacteria 5706
90 Ga0105240_10065344 3300009093 Bacteria 4517
91 Ga0105240_10136301 3300009093 Bacteria 2940
92 Ga0105243_10000006 3300009148 Bacteria 465541
93 Ga0105241_10000340 3300009174 Bacteria 35392
94 Ga0105241_10000657 3300009174 Bacteria 25953
95 Ga0105241_10017701 3300009174 Bacteria 5239
96 Ga0105242_10006768 3300009176 Bacteria 8840
97 Ga0105242_10052121 3300009176 Bacteria 3338
98 Ga0105237_10001062 3300009545 Bacteria 36906
99 Ga0105237_10002005 3300009545 Bacteria 25911
100 Ga0105237_10005415 3300009545 Bacteria 14411
101 Ga0105237_10007996 3300009545 Bacteria 11511
102 Ga0105237_10008097 3300009545 Bacteria 11421
103 Ga0105237_10057541 3300009545 Bacteria 3890
104 Ga0105237_10134181 3300009545 Bacteria 2470
105 Ga0105238_10002824 3300009551 Bacteria 17330
106 Ga0105238_10061112 3300009551 Bacteria 3771
107 Ga0105239_10000007 3300010375 Bacteria 385297
108 Ga0105239_10000011 3300010375 Bacteria 337500
109 Ga0105239_10001410 3300010375 Bacteria 32090
110 Ga0105239_10008297 3300010375 Bacteria 11837
111 Ga0105239_10015248 3300010375 Bacteria 8515
112 Ga0105239_10015721 3300010375 Bacteria 8376
113 Ga0105239_10031794 3300010375 Bacteria 5799
114 Ga0105239_10083971 3300010375 Bacteria 3507
115 Ga0105239_10157622 3300010375 Bacteria 2536
116 Ga0157373_10000038 3300013100 Bacteria 121372
117 Ga0157373_10000269 3300013100 Bacteria 41858
118 Ga0157373_10007156 3300013100 Bacteria 8322
119 Ga0157373_10036932 3300013100 Bacteria 3505
120 Ga0157371_10000541 3300013102 Bacteria 44986
121 Ga0157371_10001089 3300013102 Bacteria 29420
122 Ga0157371_10004699 3300013102 Bacteria 11802
123 Ga0157371_10014250 3300013102 Bacteria 6010
124 Ga0157371_10018893 3300013102 Bacteria 5091
125 Ga0157371_10026228 3300013102 Bacteria 4237
126 Ga0157370_10000531 3300013104 Bacteria 47724
127 Ga0157370_10002584 3300013104 Bacteria 21751
128 Ga0157370_10002953 3300013104 Bacteria 20247
129 Ga0157370_10007819 3300013104 Bacteria 11585
130 Ga0157370_10017853 3300013104 Bacteria 7150
131 Ga0157370_10018619 3300013104 Bacteria 6982
132 Ga0157370_10063258 3300013104 Bacteria 3506
133 Ga0157369_10000402 3300013105 Bacteria 57623
134 Ga0157369_10053193 3300013105 Bacteria 4377
135 Ga0157369_10107550 3300013105 Bacteria 2967
136 Ga0157369_10324988 3300013105 Bacteria 1599
137 Ga0157374_10000025 3300013296 Bacteria 245131
138 Ga0157374_10000988 3300013296 Bacteria 24642
139 Ga0157374_10001343 3300013296 Bacteria 20924
140 Ga0157374_10122611 3300013296 Bacteria 2510
141 Ga0157378_10026901 3300013297 Bacteria 5073
142 Ga0157378_10136071 3300013297 Bacteria 2278
143 Ga0157378_10142185 3300013297 Bacteria 2229
144 Ga0163162_10000082 3300013306 Bacteria 86888
145 Ga0163162_10004150 3300013306 Bacteria 13911
146 Ga0157372_10000026 3300013307 Bacteria 195407
147 Ga0157372_10000582 3300013307 Bacteria 39937
148 Ga0157372_10001395 3300013307 Bacteria 26028
149 Ga0157372_10005604 3300013307 Bacteria 13351
150 Ga0157372_10035578 3300013307 Bacteria 5483
151 Ga0157372_10038885 3300013307 Bacteria 5250
152 Ga0157372_10039030 3300013307 Bacteria 5241
153 Ga0157372_10082038 3300013307 Bacteria 3650
154 Ga0157372_10091662 3300013307 Bacteria 3456
155 Ga0157372_10274565 3300013307 Bacteria 1959
156 Ga0157375_10085221 3300013308 Bacteria 3209
157 Ga0157375_10303416 3300013308 Bacteria 1760
158 Ga0157380_10000065 3300014326 Bacteria 60148
159 Ga0163161_10012813 3300017792 Bacteria 5825
160 Ga0207427_100137 3300025231 Bacteria 88182
161 Ga0209437_100112 3300025233 Bacteria 214292
162 Ga0209437_100143 3300025233 Bacteria 164970
163 Ga0209026_1000490 3300025250 Bacteria 28944
164 Ga0209129_1011716 3300025258 Bacteria 2071
165 Ga0209233_1000126 3300025261 Bacteria 214298
166 Ga0209233_1004843 3300025261 Bacteria 4534
167 Ga0209233_1006719 3300025261 Bacteria 3687
168 Ga0209455_1001554 3300025272 Bacteria 10175
169 Ga0207710_10001739 3300025900 Bacteria 10530
170 Ga0207647_10000742 3300025904 Bacteria 25591
171 Ga0207705_10000257 3300025909 Bacteria 51549
172 Ga0207705_10010365 3300025909 Bacteria 6778
173 Ga0207705_10010801 3300025909 Bacteria 6629
174 Ga0207705_10144973 3300025909 Bacteria 1776
175 Ga0207705_10192864 3300025909 Bacteria 1541
176 Ga0207654_10001575 3300025911 Bacteria 11979
177 Ga0207654_10002884 3300025911 Bacteria 8719
178 Ga0207654_10021135 3300025911 Bacteria 3457
179 Ga0207707_10006116 3300025912 Bacteria 10519
180 Ga0207707_10006881 3300025912 Bacteria 9916
181 Ga0207707_10010248 3300025912 Bacteria 8135
182 Ga0207707_10181387 3300025912 Bacteria 1838
183 Ga0207695_10000048 3300025913 Bacteria 421800
184 Ga0207695_10001625 3300025913 Bacteria 36435
185 Ga0207695_10008007 3300025913 Bacteria 13310
186 Ga0207695_10035895 3300025913 Bacteria 5367
187 Ga0207695_10069768 3300025913 Bacteria 3595
188 Ga0207671_10004704 3300025914 Bacteria 12902
189 Ga0207671_10008197 3300025914 Bacteria 8905
190 Ga0207671_10027152 3300025914 Bacteria 4281
191 Ga0207671_10028885 3300025914 Bacteria 4143
192 Ga0207660_10006942 3300025917 Bacteria 7332
193 Ga0207660_10023956 3300025917 Bacteria 4128
194 Ga0207657_10005247 3300025919 Bacteria 13572
195 Ga0207657_10041068 3300025919 Bacteria 4092
196 Ga0207657_10063932 3300025919 Bacteria 3143
197 Ga0207657_10093361 3300025919 Bacteria 2507
198 Ga0207652_10000137 3300025921 Bacteria 77723
199 Ga0207652_10002579 3300025921 Bacteria 15216
200 Ga0207652_10024303 3300025921 Bacteria 5026
201 Ga0207652_10056576 3300025921 Bacteria 3376
202 Ga0207652_10073479 3300025921 Bacteria 2975
203 Ga0207694_10130024 3300025924 Bacteria 2018
204 Ga0207650_10048996 3300025925 Bacteria 3118
205 Ga0207706_10000454 3300025933 Bacteria 43636
206 Ga0207686_10030757 3300025934 Bacteria 3183
207 Ga0207709_10000007 3300025935 Bacteria 752025
208 Ga0207704_10000019 3300025938 Bacteria 152734
209 Ga0207661_10051627 3300025944 Bacteria 3282
210 Ga0207661_10071557 3300025944 Bacteria 2834
211 Ga0207667_10000095 3300025949 Bacteria 143866
212 Ga0207667_10002951 3300025949 Bacteria 21107
213 Ga0207667_10016806 3300025949 Bacteria 8255
214 Ga0207667_10017869 3300025949 Bacteria 7971
215 Ga0207667_10038630 3300025949 Bacteria 5096
216 Ga0207667_10067151 3300025949 Bacteria 3736
217 Ga0207667_10069031 3300025949 Bacteria 3679
218 Ga0207667_10192997 3300025949 Bacteria 2090
219 Ga0207640_10017187 3300025981 Bacteria 4226
220 Ga0207640_10139717 3300025981 Bacteria 1764
221 Ga0207658_10000794 3300025986 Bacteria 26621
222 Ga0207677_10011891 3300026023 Bacteria 4982
223 Ga0207639_10046515 3300026041 Bacteria 3275
224 Ga0207639_10077674 3300026041 Bacteria 2618
225 Ga0207678_10050521 3300026067 Bacteria 3592
226 Ga0207678_10087737 3300026067 Bacteria 2659
227 Ga0207702_10000258 3300026078 Bacteria 61221
228 Ga0207702_10004912 3300026078 Bacteria 11756
229 Ga0207702_10045897 3300026078 Bacteria 3677
230 Ga0207702_10056981 3300026078 Bacteria 3319
231 Ga0207648_10000220 3300026089 Bacteria 61703
232 Ga0207676_10033989 3300026095 Bacteria 3858
233 Ga0207675_100067713 3300026118 Bacteria 3337
234 Ga0207683_10012722 3300026121 Bacteria 7180
235 Ga0207698_10035783 3300026142 Bacteria 3636
236 Ga0207698_10054702 3300026142 Bacteria 3072
237 Ga0207698_10163439 3300026142 Bacteria 1950
238 Ga0209281_1000424 3300027111 Bacteria 63116
239 Ga0209489_111498 3300027361 Bacteria 8950
240 Ga0209282_1024541 3300027666 Bacteria 3779
241 Ga0268264_10003210 3300028381 Bacteria 14164
242 Ga0268264_10045952 3300028381 Bacteria 3627
243 Ga0316177_1019498 3300030731 Bacteria 7221
244 Ga0316176_1042406 3300030732 Bacteria 27815
245 Ga0316183_1115618 3300030742 Bacteria 53789
246 Ga0316181_1088948 3300030744 Bacteria 14104
247 Ga0265316_10006194 3300031344 Bacteria 11465
248 Ga0307408_100000572 3300031548 Bacteria 31757
249 Ga0307508_10026879 3300031616 Bacteria 5214
250 Ga0316576_10066564 3300031727 Bacteria 2650
251 Ga0316576_10110624 3300031727 Bacteria 2059
252 Ga0307405_10000001 3300031731 Bacteria 1731270
253 Ga0307405_10047143 3300031731 Bacteria 2652
254 Ga0307413_10000191 3300031824 Bacteria 17656
255 Ga0307406_10052503 3300031901 Bacteria 2593
256 Ga0307407_10003954 3300031903 Bacteria 6188
257 Ga0307409_100011170 3300031995 Bacteria 5642
258 Ga0307414_10001209 3300032004 Bacteria 13311
259 Ga0307414_10005858 3300032004 Bacteria 6797
260 Ga0307414_10048820 3300032004 Bacteria 2923
261 Ga0307411_10000002 3300032005 Bacteria 534807
262 Ga0307411_10030336 3300032005 Bacteria 3313
263 Ga0307415_100002017 3300032126 Bacteria 10000
264 Ga0307510_10001525 3300033180 Bacteria 25537
265 Ga0373941_0015140 3300035115 Bacteria 2073
266 Ga0395899_0000034 3300037312 Bacteria 302623
267 Ga0395899_0000040 3300037312 Bacteria 261561
268 Ga0395899_0000055 3300037312 Bacteria 220579
269 Ga0395899_0007992 3300037312 Bacteria 8147
270 Ga0395899_0023923 3300037312 Bacteria 4622
271 Ga0395899_0048589 3300037312 Bacteria 3157
272 Ga0395900_0001045 3300037418 Bacteria 35498
273 Ga0395900_0003621 3300037418 Bacteria 16611
274 Ga0395900_0037991 3300037418 Bacteria 4964
275 Ga0395900_0054799 3300037418 Bacteria 4106
276 Ga0395898_0003210 3300037466 Bacteria 18391
277 Ga0395898_0017857 3300037466 Bacteria 7237
278 Ga0395898_0049095 3300037466 Bacteria 4136
279 Ga0395898_0117387 3300037466 Bacteria 2549
280 Ga0395905_0000355 3300037471 Bacteria 65176
281 Ga0395905_0012756 3300037471 Bacteria 8083
282 Ga0395901_0001950 3300038443 Bacteria 21241
283 Ga0395901_0016491 3300038443 Bacteria 7527
284 Ga0395901_0018834 3300038443 Bacteria 7057
285 Ga0400483_062829 3300039062 Bacteria 2532
286 Ga0439447_000057 3300041407 Bacteria 38460
287 Ga0439466_0001207 3300041411 Bacteria 10047
288 Ga0451795_0707451 3300041456 Bacteria 3110
289 Ga0451577_0000249 3300042876 Bacteria 106109
290 Ga0466972_0000145 3300044658 Bacteria 57979
291 Ga0453684_0028977 3300044712 Bacteria 7878
292 Ga0453684_0061199 3300044712 Bacteria 4835
293 Ga0453684_0316292 3300044712 Bacteria 1769
294 Ga0453684_0386629 3300044712 Bacteria 1570
295 Ga0466959_0038776 3300045049 Bacteria 3520
296 Ga0451576_0000003 3300045051 Bacteria 1550573
297 Ga0451576_0001299 3300045051 Bacteria 43263
298 Ga0451576_0002382 3300045051 Bacteria 28289
299 Ga0451576_0016159 3300045051 Bacteria 8247
300 Ga0466958_0014243 3300045836 Bacteria 4541
301 Ga0495650_0016614 3300046471 Bacteria 3721
302 Ga0495606_0108303 3300046507 Bacteria 1680
303 Ga0495610_0015273 3300046512 Bacteria 4470
304 Ga0495616_0015241 3300046513 Bacteria 4277
305 Ga0495631_0002772 3300046518 Bacteria 9720
306 Ga0495668_0000114 3300046616 Bacteria 127503
307 Ga0495634_0018355 3300046642 Unclassified 4980
308 Ga0495625_0101925 3300046660 Bacteria 1971
309 Ga0495661_0001078 3300046665 Bacteria 24017
310 Ga0495683_0036729 3300047323 Bacteria 2486
311 Ga0495686_0000128 3300047472 Bacteria 156223
312 Ga0495686_0000220 3300047472 Bacteria 104967
313 Ga0495686_0000335 3300047472 Bacteria 77634
314 Ga0496116_0001306 3300048919 Bacteria 28445
315 Ga0496117_0000478 3300048920 Bacteria 66542
316 Ga0496118_0075349 3300048921 Bacteria 2407
317 Ga0496121_0008164 3300048924 Bacteria 12433
318 Ga0496123_0012067 3300048926 Bacteria 7410
319 Ga0496125_0125096 3300048928 Bacteria 1824
320 Ga0495678_023086 3300049459 Bacteria 2711
321 Ga0501223_001183 3300049663 Bacteria 6152
322 Ga0501238_000153 3300049671 Bacteria 10601
323 Ga0501241_002332 3300049758 Bacteria 3679
324 Ga0501266_000021 3300049763 Bacteria 96901
325 Ga0501280_000448 3300049776 Bacteria 9855
326 nmdc:mga0k408_1529_c1 3300050493 Bacteria 12494
327 nmdc:mga0k408_2059_c2 3300050493 Bacteria 7365
328 Ga0500635_0001148 3300053080 Bacteria 6352
329 Ga0500646_0004546 3300053090 Bacteria 3508
330 Ga0500618_000050 3300053125 Bacteria 105238
331 Ga0500658_0000311 3300053134 Bacteria 21774
332 Ga0500624_000545 3300053157 Bacteria 10593
333 2520881257 2519899754 Bacteria 5336938
334 2644010826 2643221600 Bacteria 5530138
335 2644643360 2643221716 Bacteria 4986332
336 2722726763 2721755487 Bacteria 6357185
337 2739999600 2739367857 Bacteria 5433684
338 2740004416 2739367858 Bacteria 5432813
339 2802652003 2802428842 Bacteria 4926114
340 2817414877 2816332280 Bacteria 5109718
341 2842907763 2842903701 Bacteria 6986368
342 2852625186 2852623160 Bacteria 4376875
343 2857615150 2857613821 Bacteria 4917088
344 2857629607 2857627736 Bacteria 5625397
345 2881361993 2881359912 Bacteria 4935907
346 2881956647 2881955468 Bacteria 3545609
347 2884934202 2884933994 Bacteria 4535041
348 2890737576 2890737413 Bacteria 4269751
349 2896319574 2896317667 Bacteria 4606601
350 2896345179 2896344016 Bacteria 3811746
351 2898713383 2898713307 Bacteria 4110805
352 2903895961 2903895155 Bacteria 5258610
353 2904422009 2904419702 Bacteria 5166287
354 2904559646 2904555929 Bacteria 5218588
355 2904782171 2904780799 Bacteria 5840761
356 2919179574 2919177583 Bacteria 5641607
357 2919196264 2919191525 Bacteria 5765973
358 2919438136 2919437846 Bacteria 6199444
359 2919684940 2919683626 Bacteria 5534354
360 2929152020 2929150217 Bacteria 5462483
361 2958460313 2958458903 Bacteria 5301041
362 3003236988 3003233435 Bacteria 4458031
363 8054312232 8054307821 Bacteria 5212224
364 8055419329 8055419101 Bacteria 5289643
365 8055590527 8055588893 Bacteria 3619545
366 8055592692 8055592153 Bacteria 5961247
367 8056442697 8056440228 Bacteria 4946504
368 Ga0495687_003296
369 SwRhRL2b_contig_1604448
370 SwRhRL2b_contig_1716529
371 JGI24741J21665_1009317
372 JGI24740J21852_10012200
373 JGI24737J22298_10003137
374 JGI25162J39368_1000137
375 JGI25162J39368_1003034
376 JGI25164J39214_1001191
377 JGI25165J46597_1001519
378 rootH1_10184238
379 rootH2_10001202
380 rootH2_10002321
381 rootH2_10047161
382 rootH2_10061904
383 rootL2_10012003
384 Ga0065714_10004227
385 Ga0065714_10077239
386 Ga0065704_10001950
387 Ga0065704_10072462
388 Ga0070658_10000200
389 Ga0070658_10006777
390 Ga0070658_10021029
391 Ga0070658_10034199
392 Ga0070658_10060993
393 Ga0070658_10165131
394 Ga0070658_10174075
395 Ga0070683_100060463
396 Ga0070683_100134141
397 Ga0070670_100059800
398 Ga0070680_100001641
399 Ga0070680_100043077
400 Ga0070682_100008151
401 Ga0068868_100036168
402 Ga0070660_100001037
403 Ga0070660_100025762
404 Ga0070660_100084430
405 Ga0070691_10001643
406 Ga0070671_100138870
407 Ga0070659_100239037
408 Ga0070667_100001670
409 Ga0070667_100061752
410 Ga0070663_100024660
411 Ga0070678_100021049
412 Ga0070662_100000013
413 Ga0070681_10022717
414 Ga0070681_10023940
415 Ga0070681_10058984
416 Ga0070681_10065338
417 Ga0068867_100000040
418 Ga0070679_100003410
419 Ga0070679_100011497
420 Ga0070679_100020299
421 Ga0070679_100058053
422 Ga0070679_100076429
423 Ga0068853_100107964
424 Ga0070665_100000010
425 Ga0070665_100175277
426 Ga0068855_100000204
427 Ga0068855_100000856
428 Ga0068855_100002404
429 Ga0068854_100050234
430 Ga0068854_100091404
431 Ga0068856_100000023
432 Ga0068856_100066539
433 Ga0068856_100117601
434 Ga0068852_100019848
435 Ga0068859_100005195
436 Ga0068859_100012109
437 Ga0068859_100156883
438 Ga0068866_10044023
439 Ga0068860_100002499
440 Ga0068860_100005282
441 Ga0068862_100006022
442 Ga0075366_10013071
443 Ga0097621_100000011
444 Ga0097621_100002238
445 Ga0068871_100000083
446 Ga0068871_100006953
447 Ga0068865_100000335
448 Ga0097620_100005195
449 Ga0097620_100156896
450 Ga0099824_1000146
451 Ga0079104_1000126
452 Ga0099826_10000374
453 Ga0105251_10055761
454 Ga0105240_10000219
455 Ga0105240_10001434
456 Ga0105240_10043607
457 Ga0105240_10065344
458 Ga0105240_10136301
459 Ga0105243_10000006
460 Ga0105241_10000340
461 Ga0105241_10000657
462 Ga0105241_10017701
463 Ga0105242_10006768
464 Ga0105242_10052121
465 Ga0105237_10001062
466 Ga0105237_10002005
467 Ga0105237_10005415
468 Ga0105237_10007996
469 Ga0105237_10008097
470 Ga0105237_10057541
471 Ga0105237_10134181
472 Ga0105238_10002824
473 Ga0105238_10061112
474 Ga0105239_10000007
475 Ga0105239_10000011
476 Ga0105239_10001410
477 Ga0105239_10008297
478 Ga0105239_10015248
479 Ga0105239_10015721
480 Ga0105239_10031794
481 Ga0105239_10083971
482 Ga0105239_10157622
483 Ga0157373_10000038
484 Ga0157373_10000269
485 Ga0157373_10007156
486 Ga0157373_10036932
487 Ga0157371_10000541
488 Ga0157371_10001089
489 Ga0157371_10004699
490 Ga0157371_10014250
491 Ga0157371_10018893
492 Ga0157371_10026228
493 Ga0157370_10000531
494 Ga0157370_10002584
495 Ga0157370_10002953
496 Ga0157370_10007819
497 Ga0157370_10017853
498 Ga0157370_10018619
499 Ga0157370_10063258
500 Ga0157369_10000402
501 Ga0157369_10053193
502 Ga0157369_10107550
503 Ga0157369_10324988
504 Ga0157374_10000025
505 Ga0157374_10000988
506 Ga0157374_10001343
507 Ga0157374_10122611
508 Ga0157378_10026901
509 Ga0157378_10136071
510 Ga0157378_10142185
511 Ga0163162_10000082
512 Ga0163162_10004150
513 Ga0157372_10000026
514 Ga0157372_10000582
515 Ga0157372_10001395
516 Ga0157372_10005604
517 Ga0157372_10035578
518 Ga0157372_10038885
519 Ga0157372_10039030
520 Ga0157372_10082038
521 Ga0157372_10091662
522 Ga0157372_10274565
523 Ga0157375_10085221
524 Ga0157375_10303416
525 Ga0157380_10000065
526 Ga0163161_10012813
527 Ga0207427_100137
528 Ga0209437_100112
529 Ga0209437_100143
530 Ga0209026_1000490
531 Ga0209129_1011716
532 Ga0209233_1000126
533 Ga0209233_1004843
534 Ga0209233_1006719
535 Ga0209455_1001554
536 Ga0207710_10001739
537 Ga0207647_10000742
538 Ga0207705_10000257
539 Ga0207705_10010365
540 Ga0207705_10010801
541 Ga0207705_10144973
542 Ga0207705_10192864
543 Ga0207654_10001575
544 Ga0207654_10002884
545 Ga0207654_10021135
546 Ga0207707_10006116
547 Ga0207707_10006881
548 Ga0207707_10010248
549 Ga0207707_10181387
550 Ga0207695_10000048
551 Ga0207695_10001625
552 Ga0207695_10008007
553 Ga0207695_10035895
554 Ga0207695_10069768
555 Ga0207671_10004704
556 Ga0207671_10008197
557 Ga0207671_10027152
558 Ga0207671_10028885
559 Ga0207660_10006942
560 Ga0207660_10023956
561 Ga0207657_10005247
562 Ga0207657_10041068
563 Ga0207657_10063932
564 Ga0207657_10093361
565 Ga0207652_10000137
566 Ga0207652_10002579
567 Ga0207652_10024303
568 Ga0207652_10056576
569 Ga0207652_10073479
570 Ga0207694_10130024
571 Ga0207650_10048996
572 Ga0207706_10000454
573 Ga0207686_10030757
574 Ga0207709_10000007
575 Ga0207704_10000019
576 Ga0207661_10051627
577 Ga0207661_10071557
578 Ga0207667_10000095
579 Ga0207667_10002951
580 Ga0207667_10016806
581 Ga0207667_10017869
582 Ga0207667_10038630
583 Ga0207667_10067151
584 Ga0207667_10069031
585 Ga0207667_10192997
586 Ga0207640_10017187
587 Ga0207640_10139717
588 Ga0207658_10000794
589 Ga0207677_10011891
590 Ga0207639_10046515
591 Ga0207639_10077674
592 Ga0207678_10050521
593 Ga0207678_10087737
594 Ga0207702_10000258
595 Ga0207702_10004912
596 Ga0207702_10045897
597 Ga0207702_10056981
598 Ga0207648_10000220
599 Ga0207676_10033989
600 Ga0207675_100067713
601 Ga0207683_10012722
602 Ga0207698_10035783
603 Ga0207698_10054702
604 Ga0207698_10163439
605 Ga0209281_1000424
606 Ga0209489_111498
607 Ga0209282_1024541
608 Ga0268264_10003210
609 Ga0268264_10045952
610 Ga0316177_1019498
611 Ga0316176_1042406
612 Ga0316183_1115618
613 Ga0316181_1088948
614 Ga0265316_10006194
615 Ga0307408_100000572
616 Ga0307508_10026879
617 Ga0316576_10066564
618 Ga0316576_10110624
619 Ga0307405_10000001
620 Ga0307405_10047143
621 Ga0307413_10000191
622 Ga0307406_10052503
623 Ga0307407_10003954
624 Ga0307409_100011170
625 Ga0307414_10001209
626 Ga0307414_10005858
627 Ga0307414_10048820
628 Ga0307411_10000002
629 Ga0307411_10030336
630 Ga0307415_100002017
631 Ga0307510_10001525
632 Ga0373941_0015140
633 Ga0395899_0000034
634 Ga0395899_0000040
635 Ga0395899_0000055
636 Ga0395899_0007992
637 Ga0395899_0023923
638 Ga0395899_0048589
639 Ga0395900_0001045
640 Ga0395900_0003621
641 Ga0395900_0037991
642 Ga0395900_0054799
643 Ga0395898_0003210
644 Ga0395898_0017857
645 Ga0395898_0049095
646 Ga0395898_0117387
647 Ga0395905_0000355
648 Ga0395905_0012756
649 Ga0395901_0001950
650 Ga0395901_0016491
651 Ga0395901_0018834
652 Ga0400483_062829
653 Ga0439447_000057
654 Ga0439466_0001207
655 Ga0451795_0707451
656 Ga0451577_0000249
657 Ga0466972_0000145
658 Ga0453684_0028977
659 Ga0453684_0061199
660 Ga0453684_0316292
661 Ga0453684_0386629
662 Ga0466959_0038776
663 Ga0451576_0000003
664 Ga0451576_0001299
665 Ga0451576_0002382
666 Ga0451576_0016159
667 Ga0466958_0014243
668 Ga0495650_0016614
669 Ga0495606_0108303
670 Ga0495610_0015273
671 Ga0495616_0015241
672 Ga0495631_0002772
673 Ga0495668_0000114
674 Ga0495634_0018355
675 Ga0495625_0101925
676 Ga0495661_0001078
677 Ga0495683_0036729
678 Ga0495686_0000128
679 Ga0495686_0000220
680 Ga0495686_0000335
681 Ga0496116_0001306
682 Ga0496117_0000478
683 Ga0496118_0075349
684 Ga0496121_0008164
685 Ga0496123_0012067
686 Ga0496125_0125096
687 Ga0495678_023086
688 Ga0501223_001183
689 Ga0501238_000153
690 Ga0501241_002332
691 Ga0501266_000021
692 Ga0501280_000448
693 nmdc:mga0k408_1529_c1
694 nmdc:mga0k408_2059_c2
695 Ga0500635_0001148
696 Ga0500646_0004546
697 Ga0500618_000050
698 Ga0500658_0000311
699 Ga0500624_000545
700 2520881257
701 2644010826
702 2644643360
703 2722726763
704 2739999600
705 2740004416
706 2802652003
707 2817414877
708 2842907763
709 2852625186
710 2857615150
711 2857629607
712 2881361993
713 2881956647
714 2884934202
715 2890737576
716 2896319574
717 2896345179
718 2898713383
719 2903895961
720 2904422009
721 2904559646
722 2904782171
723 2919179574
724 2919196264
725 2919438136
726 2919684940
727 2929152020
728 2958460313
729 3003236988
730 8054312232
731 8055419329
732 8055590527
733 8055592692
734 8056442697

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02875

Mur_ligase_C

Mur ligase, glutamate ligase domain

340

453

0.89

PF21799

MurD-like_N

Mur ligase MurD-like, N-terminal domain

34

123

0.89

PF21377

MurD_N

MurD N-terminal domain

35

110

0.88

PF08245

Mur_ligase_M

Mur ligase middle domain

139

318

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
8gsm-assembly1.cif.gz_G crystal structure of vibmo1 0.9699 14 42
7c4a-assembly1.cif.gz_B nica2 with cofactor fad 0.9299 14 44
3all-assembly1.cif.gz_A crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, mutant y270a 0.9294 14 44
3alm-assembly2.cif.gz_B crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, mutant c294a 0.9267 14 44
3zdn-assembly2.cif.gz_D d11-c mutant of monoamine oxidase from aspergillus niger 0.9164 14 43
ID Description Score Start End Superfamily
af_Q2FZ92_312_442_3.90.190.20 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9499 323 453 3.90.190.20
af_G5EBJ9_5_157_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9441 15 44 3.50.50.60
af_A4HWA7_1_176_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9392 14 44 3.50.50.60
af_Q2FZ92_312_442_3.90.190.20 Alpha Beta;Alpha-Beta Complex;Protein-Tyrosine Phosphatase; Chain A;Mur ligase, C-terminal domain 0.9361 323 453 3.90.190.20
3lk7A02 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.9278 104 316 3.40.1190.10
ID Description Score Start End GO Terms
AF-A0A2R7K1K9-F1-model_v4 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase 0.9928 14 107 GO:0005524
GO:0005737
GO:0008360
GO:0008764
GO:0051301
AF-A0A7Y2A6M6-F1-model_v4 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase 0.9912 322 457 GO:0005524
GO:0005737
GO:0008360
GO:0008764
GO:0009058
GO:0051301
AF-A0A522F1X1-F1-model_v4 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase 0.9897 14 107 GO:0005524
GO:0005737
GO:0008360
GO:0008764
GO:0051301
AF-K1V7Q5-F1-model_v4 UDP-N-acetylmuramoylalanine--D-glutamate ligase 0.9864 18 99 GO:0005524
GO:0005737
GO:0008360
GO:0008764
GO:0051301
AF-A0A7Y2A6M6-F1-model_v4 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase 0.984 322 457 GO:0005524
GO:0005737
GO:0008360
GO:0008764
GO:0009058
GO:0051301

Map