F422462

General Info

Members Datasets Scaffolds Average Seq Length
362 187 724 534

Family's Representative Sequence

Representative Sequence 3300003791|Ga0055530_10003042|Ga0055530_100030426
Length 647
Sequence LHFTASAAICAAGVGRTQSSPTRSGPEGSSRNEFAAGRSGSHPNHIIALIRIVTLDFIRGRAFPTSLSGTRIKSGVTRYWKLLYSPSTSALVPPNTDSMSDSADDETPMLGMDLPETAPQPSSGPYRVLARKYRPQTFAELIGQDAMVRTLGNAIARDRLAHAFLMTGVRGVGKTSTARLIAKALNCIGPDGQGGPTIDPCGVCEPCRAITEGRHIDVIEMDAASNTGVDDVREIIEAVRYAAVSARYKIYIIDEVHMLSRNAFNALLKTLEEPPPHVKFLFATTEVNKVPVTVLSRCQRFDLRRITPDMLFAHFSAILQKEGVEAEAPAIWLIANAAEGSVRDGLSILDQAIAHADLDGGGMIGAAQVRVMLGLSDRTSIAQLMATILEGPVAMVRGLMDLTHAITLAKVSRHDDPALAEADRERIGDWAKKLGFAPLNRLWQLLLKGHDEVLRANNPLEHLEMLLLRVIYAAAMPDPGELAKLLEKGGVPTMPLAAPAAPASQENMAAEPVATADTAQVPASALTVAQIHQLLESTGNHRLAVDVYDHMRIISLEPGSLIFAPVAALGAAFARDLGEALLAATGSRWQVRAGEGEGRPSLGDVRTAKLADNDARIRELPVVKAALAAFPDARLVEDDDNRHRSNP

Samples

Sample ID Description Type Environment
1 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
2 3300001904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 Metagenome Rhizosphere
3 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
4 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
5 3300003773 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 Metagenome Endosphere
6 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
7 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
8 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
9 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
10 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
11 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
12 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
13 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
14 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
15 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
16 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
17 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
18 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
19 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
20 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
21 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
22 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
23 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
24 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
25 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
26 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
27 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
28 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
29 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
30 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
31 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
32 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
33 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
34 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
35 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
36 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
37 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
38 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
39 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
40 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
41 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
42 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
43 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
44 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
45 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
46 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
47 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
48 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
49 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
50 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
51 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
52 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
53 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
54 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
55 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
56 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
57 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
58 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
59 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
60 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
61 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
62 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
63 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
64 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
65 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
66 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
68 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
69 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
70 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
71 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
73 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
109 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
113 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
114 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
115 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
116 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
117 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
118 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
119 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
120 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
121 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
122 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
123 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
124 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
125 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
126 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
127 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
128 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
129 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
130 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
131 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
132 3300042142 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 Metagenome Rhizosphere
133 3300042144 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624F_E14_070516_89 Metagenome Rhizosphere
134 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
135 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
136 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
137 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
138 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
139 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
140 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
141 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
142 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
143 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
144 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
145 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
146 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
147 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
148 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
149 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
150 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
151 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
152 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
153 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
154 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
155 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
156 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
157 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
158 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
159 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
160 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
161 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
162 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
163 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
164 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
165 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
166 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
167 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
168 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
169 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
170 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
171 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
172 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
173 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
174 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
175 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
176 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
177 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
178 2643221560 Sphingopyxis sp. Root1497 Isolate Unclassified
179 2643221563 Sphingopyxis sp. Root154 Isolate Unclassified
180 2643221608 Sphingopyxis sp. Root214 Isolate Unclassified
181 2643221622 Sphingomonas sp. Root241 Isolate Unclassified
182 2830075706 Sphingomonas jinjuensis DSM 21457 Isolate Rhizosphere
183 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
184 2852680915 Sphingopyxis sp. JAI128 Isolate Rhizosphere
185 2885427238 Sphingomonas mesophila SYSUP0001 Isolate Stem Tuber
186 2896429255 Sphingomonas rhizophila KACC 19189 Isolate Rhizosphere
187 8057101203 Sphingomonas lycopersici MMSM20 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.96
Metatranscriptomes 0
Isolates 3.04

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.46
Nodule 0
Rhizoplane 2.49
Rhizosphere 87.29
Stem 0
Stem Tuber 0.28
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0055530_10003042 3300003791 Bacteria 10008
2 JGI24736J21556_1000580 3300001904 Bacteria 6711
3 JGI25165J46597_1000012 3300003214 Bacteria 421074
4 JGI25153J46596_10009312 3300003215 Bacteria 4586
5 Ga0055537_1001525 3300003773 Bacteria 8894
6 Ga0055524_1000180 3300003775 Bacteria 71495
7 Ga0055531_10016158 3300003794 Bacteria 3238
8 Ga0065715_10001063 3300005293 Bacteria 13516
9 Ga0070658_10028539 3300005327 Bacteria 4481
10 Ga0070658_10081659 3300005327 Bacteria 2655
11 Ga0070658_10109595 3300005327 Bacteria 2286
12 Ga0070676_10006252 3300005328 Bacteria 6361
13 Ga0070670_100001124 3300005331 Bacteria 21273
14 Ga0070670_100009336 3300005331 Bacteria 8372
15 Ga0070670_100011159 3300005331 Bacteria 7678
16 Ga0070670_100047043 3300005331 Bacteria 3711
17 Ga0070677_10001240 3300005333 Bacteria 8200
18 Ga0070677_10003297 3300005333 Bacteria 5199
19 Ga0070677_10036717 3300005333 Bacteria 1908
20 Ga0070666_10000595 3300005335 Bacteria 21751
21 Ga0070680_100059084 3300005336 Bacteria 3136
22 Ga0070680_100122704 3300005336 Bacteria 2169
23 Ga0068868_100002448 3300005338 Bacteria 12875
24 Ga0070660_100068051 3300005339 Bacteria 2775
25 Ga0070687_100021806 3300005343 Bacteria 3018
26 Ga0070668_100000060 3300005347 Bacteria 67693
27 Ga0070668_100001173 3300005347 Bacteria 18542
28 Ga0070668_100094812 3300005347 Bacteria 2357
29 Ga0070669_100099017 3300005353 Bacteria 2197
30 Ga0070675_100000575 3300005354 Bacteria 25249
31 Ga0070675_100004698 3300005354 Bacteria 10425
32 Ga0070675_100098177 3300005354 Bacteria 2463
33 Ga0070675_100139613 3300005354 Bacteria 2070
34 Ga0070671_100000312 3300005355 Bacteria 33022
35 Ga0070671_100000830 3300005355 Bacteria 22439
36 Ga0070671_100069152 3300005355 Bacteria 2945
37 Ga0070671_100074858 3300005355 Bacteria 2829
38 Ga0070671_100146161 3300005355 Bacteria 1996
39 Ga0070674_100011587 3300005356 Bacteria 5374
40 Ga0070673_100006313 3300005364 Bacteria 7698
41 Ga0070673_100021083 3300005364 Bacteria 4714
42 Ga0070673_100033268 3300005364 Bacteria 3891
43 Ga0070673_100093107 3300005364 Bacteria 2467
44 Ga0070659_100008209 3300005366 Bacteria 7623
45 Ga0070659_100036873 3300005366 Bacteria 3811
46 Ga0070667_100003117 3300005367 Bacteria 14246
47 Ga0070667_100007870 3300005367 Bacteria 8841
48 Ga0070667_100049153 3300005367 Bacteria 3551
49 Ga0070709_10007938 3300005434 Bacteria 5829
50 Ga0070714_100052648 3300005435 Bacteria 3472
51 Ga0070714_100103361 3300005435 Bacteria 2513
52 Ga0070663_100002400 3300005455 Bacteria 10535
53 Ga0070663_100043222 3300005455 Bacteria 3170
54 Ga0070663_100056199 3300005455 Bacteria 2819
55 Ga0070678_100005684 3300005456 Bacteria 7242
56 Ga0070678_100063537 3300005456 Bacteria 2732
57 Ga0070678_100070728 3300005456 Bacteria 2610
58 Ga0070662_100014338 3300005457 Bacteria 5293
59 Ga0070662_100123812 3300005457 Bacteria 1984
60 Ga0070681_10071859 3300005458 Bacteria 3425
61 Ga0070679_100011152 3300005530 Bacteria 8560
62 Ga0070672_100044350 3300005543 Bacteria 3434
63 Ga0070672_100055262 3300005543 Bacteria 3110
64 Ga0070695_100031993 3300005545 Bacteria 3286
65 Ga0070696_100005517 3300005546 Bacteria 8441
66 Ga0070696_100017592 3300005546 Bacteria 4826
67 Ga0070665_100000265 3300005548 Bacteria 85729
68 Ga0070665_100013703 3300005548 Bacteria 8159
69 Ga0070665_100032686 3300005548 Bacteria 5236
70 Ga0070704_100105546 3300005549 Bacteria 2133
71 Ga0068855_100052475 3300005563 Bacteria 4800
72 Ga0070664_100002595 3300005564 Bacteria 14575
73 Ga0070664_100009513 3300005564 Bacteria 7880
74 Ga0068854_100028873 3300005578 Bacteria 3836
75 Ga0068854_100033027 3300005578 Bacteria 3605
76 Ga0068856_100145999 3300005614 Bacteria 2373
77 Ga0068852_100043638 3300005616 Bacteria 3804
78 Ga0068852_100155271 3300005616 Bacteria 2131
79 Ga0068863_100000001 3300005841 Bacteria 581116
80 Ga0068858_100002172 3300005842 Bacteria 19897
81 Ga0068858_100002327 3300005842 Bacteria 19215
82 Ga0068860_100005047 3300005843 Bacteria 13430
83 Ga0068860_100005865 3300005843 Bacteria 12365
84 Ga0068860_100086562 3300005843 Bacteria 2982
85 Ga0068862_100015083 3300005844 Bacteria 6420
86 Ga0081539_10016507 3300005985 Bacteria 5264
87 Ga0075431_100013009 3300006847 Bacteria 8403
88 Ga0068865_100025977 3300006881 Bacteria 3857
89 Ga0105240_10018059 3300009093 Bacteria 9486
90 Ga0111539_10087435 3300009094 Bacteria 3662
91 Ga0105248_10003215 3300009177 Bacteria 18118
92 Ga0105248_10025767 3300009177 Bacteria 6541
93 Ga0105248_10063148 3300009177 Bacteria 4156
94 Ga0105237_10140928 3300009545 Bacteria 2405
95 Ga0105238_10043517 3300009551 Bacteria 4543
96 Ga0157373_10003233 3300013100 Bacteria 12319
97 Ga0157373_10015750 3300013100 Bacteria 5522
98 Ga0157373_10083392 3300013100 Bacteria 2253
99 Ga0157373_10085375 3300013100 Bacteria 2225
100 Ga0157371_10010149 3300013102 Bacteria 7358
101 Ga0157371_10015926 3300013102 Bacteria 5624
102 Ga0157369_10190433 3300013105 Bacteria 2156
103 Ga0157374_10018680 3300013296 Bacteria 6123
104 Ga0157378_10088681 3300013297 Bacteria 2807
105 Ga0157372_10096331 3300013307 Bacteria 3372
106 Ga0157375_10020007 3300013308 Bacteria 6105
107 Ga0157375_10083078 3300013308 Bacteria 3247
108 Ga0163163_10002880 3300014325 Bacteria 14548
109 Ga0157376_10074744 3300014969 Bacteria 2890
110 Ga0163161_10154282 3300017792 Bacteria 1747
111 Ga0209233_1000058 3300025261 Bacteria 421872
112 Ga0209565_1000012 3300025263 Bacteria 606500
113 Ga0209675_1000097 3300025291 Bacteria 131546
114 Ga0209675_1004612 3300025291 Bacteria 6065
115 Ga0209676_1000085 3300025292 Bacteria 273425
116 Ga0209676_1003815 3300025292 Bacteria 8889
117 Ga0209676_1005610 3300025292 Bacteria 6480
118 Ga0209676_1009502 3300025292 Bacteria 4187
119 Ga0209025_1046696 3300025294 Bacteria 1778
120 Ga0209050_1001116 3300025298 Bacteria 32435
121 Ga0209050_1012244 3300025298 Bacteria 3958
122 Ga0209256_1000012 3300025299 Bacteria 790371
123 Ga0209257_1002426 3300025304 Bacteria 18595
124 Ga0209257_1006233 3300025304 Bacteria 7814
125 Ga0207682_10005566 3300025893 Bacteria 5126
126 Ga0207682_10027912 3300025893 Bacteria 2249
127 Ga0207642_10012569 3300025899 Bacteria 3061
128 Ga0207680_10001153 3300025903 Bacteria 12448
129 Ga0207647_10044851 3300025904 Bacteria 2761
130 Ga0207699_10033669 3300025906 Bacteria 2898
131 Ga0207645_10063998 3300025907 Bacteria 2350
132 Ga0207705_10000070 3300025909 Bacteria 130733
133 Ga0207705_10003711 3300025909 Bacteria 11625
134 Ga0207705_10006499 3300025909 Bacteria 8661
135 Ga0207705_10010236 3300025909 Bacteria 6822
136 Ga0207705_10024576 3300025909 Bacteria 4298
137 Ga0207705_10024708 3300025909 Bacteria 4288
138 Ga0207705_10064436 3300025909 Bacteria 2648
139 Ga0207695_10005011 3300025913 Bacteria 17781
140 Ga0207662_10019517 3300025918 Bacteria 3860
141 Ga0207657_10004146 3300025919 Bacteria 15363
142 Ga0207657_10005557 3300025919 Bacteria 13160
143 Ga0207657_10026787 3300025919 Bacteria 5289
144 Ga0207657_10026997 3300025919 Bacteria 5264
145 Ga0207657_10031497 3300025919 Bacteria 4802
146 Ga0207657_10032597 3300025919 Bacteria 4705
147 Ga0207657_10032967 3300025919 Bacteria 4673
148 Ga0207657_10057556 3300025919 Bacteria 3350
149 Ga0207657_10107859 3300025919 Bacteria 2303
150 Ga0207649_10000160 3300025920 Bacteria 54640
151 Ga0207652_10011362 3300025921 Bacteria 7175
152 Ga0207652_10028037 3300025921 Bacteria 4695
153 Ga0207681_10060685 3300025923 Bacteria 2597
154 Ga0207650_10013028 3300025925 Bacteria 5752
155 Ga0207650_10017443 3300025925 Bacteria 5028
156 Ga0207664_10014663 3300025929 Bacteria 5668
157 Ga0207644_10000012 3300025931 Bacteria 186652
158 Ga0207644_10002679 3300025931 Bacteria 11470
159 Ga0207706_10002192 3300025933 Bacteria 19026
160 Ga0207704_10018373 3300025938 Bacteria 3648
161 Ga0207691_10053285 3300025940 Bacteria 3694
162 Ga0207691_10106183 3300025940 Bacteria 2501
163 Ga0207711_10002415 3300025941 Bacteria 16682
164 Ga0207711_10012227 3300025941 Bacteria 7139
165 Ga0207661_10005405 3300025944 Bacteria 9000
166 Ga0207679_10009186 3300025945 Bacteria 6320
167 Ga0207679_10133740 3300025945 Bacteria 1994
168 Ga0207667_10066338 3300025949 Bacteria 3762
169 Ga0207651_10003328 3300025960 Bacteria 7877
170 Ga0207651_10005950 3300025960 Bacteria 6318
171 Ga0207651_10012171 3300025960 Bacteria 4854
172 Ga0207668_10000056 3300025972 Bacteria 93913
173 Ga0207668_10000064 3300025972 Bacteria 87025
174 Ga0207668_10077572 3300025972 Bacteria 2396
175 Ga0207640_10003482 3300025981 Bacteria 8479
176 Ga0207640_10013081 3300025981 Bacteria 4746
177 Ga0207658_10004841 3300025986 Bacteria 9306
178 Ga0207658_10020307 3300025986 Bacteria 4600
179 Ga0207658_10038468 3300025986 Bacteria 3446
180 Ga0207677_10002369 3300026023 Bacteria 9868
181 Ga0207703_10001679 3300026035 Bacteria 19907
182 Ga0207703_10001758 3300026035 Bacteria 19365
183 Ga0207703_10006767 3300026035 Bacteria 9142
184 Ga0207678_10002786 3300026067 Bacteria 15853
185 Ga0207678_10009972 3300026067 Bacteria 8335
186 Ga0207702_10213449 3300026078 Bacteria 1795
187 Ga0207702_10223532 3300026078 Bacteria 1755
188 Ga0207641_10000001 3300026088 Bacteria 1180841
189 Ga0207648_10029854 3300026089 Bacteria 4835
190 Ga0207674_10000139 3300026116 Bacteria 84273
191 Ga0207674_10027624 3300026116 Bacteria 5999
192 Ga0207674_10063632 3300026116 Bacteria 3724
193 Ga0207683_10057461 3300026121 Bacteria 3415
194 Ga0207683_10189446 3300026121 Bacteria 1867
195 Ga0209974_10002369 3300027876 Bacteria 6831
196 Ga0209974_10002503 3300027876 Bacteria 6653
197 Ga0268266_10023301 3300028379 Bacteria 5271
198 Ga0268265_10039417 3300028380 Bacteria 3483
199 Ga0268265_10056798 3300028380 Bacteria 2980
200 Ga0268265_10185776 3300028380 Bacteria 1790
201 Ga0268264_10020030 3300028381 Bacteria 5465
202 Ga0268264_10021231 3300028381 Bacteria 5304
203 Ga0307513_10091248 3300031456 Bacteria 3105
204 Ga0307408_100017550 3300031548 Bacteria 4790
205 Ga0307408_100154905 3300031548 Bacteria 1813
206 Ga0307508_10008660 3300031616 Bacteria 9392
207 Ga0307405_10008299 3300031731 Bacteria 5254
208 Ga0307405_10028319 3300031731 Bacteria 3261
209 Ga0307405_10108736 3300031731 Bacteria 1874
210 Ga0307413_10001081 3300031824 Bacteria 9951
211 Ga0307413_10001300 3300031824 Bacteria 9326
212 Ga0307413_10002029 3300031824 Bacteria 8060
213 Ga0307413_10003894 3300031824 Bacteria 6384
214 Ga0307413_10017119 3300031824 Bacteria 3768
215 Ga0307413_10019358 3300031824 Bacteria 3595
216 Ga0307413_10070417 3300031824 Bacteria 2199
217 Ga0307413_10083282 3300031824 Bacteria 2058
218 Ga0307413_10084966 3300031824 Bacteria 2042
219 Ga0307410_10007164 3300031852 Bacteria 6081
220 Ga0307410_10008866 3300031852 Bacteria 5608
221 Ga0307410_10012695 3300031852 Bacteria 4881
222 Ga0307410_10046223 3300031852 Bacteria 2903
223 Ga0307410_10053360 3300031852 Bacteria 2735
224 Ga0307406_10005346 3300031901 Bacteria 7029
225 Ga0307406_10051710 3300031901 Bacteria 2610
226 Ga0307406_10066225 3300031901 Bacteria 2350
227 Ga0307407_10003336 3300031903 Bacteria 6563
228 Ga0307407_10006374 3300031903 Bacteria 5233
229 Ga0307412_10000247 3300031911 Bacteria 35011
230 Ga0307409_100003497 3300031995 Bacteria 8550
231 Ga0307409_100007606 3300031995 Bacteria 6497
232 Ga0307409_100011892 3300031995 Bacteria 5514
233 Ga0307409_100012668 3300031995 Bacteria 5385
234 Ga0307409_100015654 3300031995 Bacteria 4985
235 Ga0307409_100073335 3300031995 Bacteria 2729
236 Ga0307409_100091575 3300031995 Bacteria 2492
237 Ga0307416_100005934 3300032002 Bacteria 7588
238 Ga0307416_100047919 3300032002 Bacteria 3386
239 Ga0307416_100117324 3300032002 Bacteria 2362
240 Ga0307416_100161581 3300032002 Bacteria 2071
241 Ga0307414_10000443 3300032004 Bacteria 21946
242 Ga0307414_10002225 3300032004 Bacteria 10118
243 Ga0307414_10002497 3300032004 Bacteria 9643
244 Ga0307414_10009027 3300032004 Bacteria 5703
245 Ga0307414_10009781 3300032004 Bacteria 5526
246 Ga0307414_10012297 3300032004 Bacteria 5055
247 Ga0307414_10032378 3300032004 Bacteria 3441
248 Ga0307414_10051855 3300032004 Bacteria 2851
249 Ga0307414_10083026 3300032004 Bacteria 2351
250 Ga0307414_10098651 3300032004 Bacteria 2192
251 Ga0307411_10000293 3300032005 Bacteria 16705
252 Ga0307411_10005245 3300032005 Bacteria 6342
253 Ga0307411_10006811 3300032005 Bacteria 5755
254 Ga0307411_10014928 3300032005 Bacteria 4341
255 Ga0307411_10016234 3300032005 Bacteria 4212
256 Ga0307411_10018967 3300032005 Bacteria 3960
257 Ga0307411_10024497 3300032005 Bacteria 3599
258 Ga0307411_10046763 3300032005 Bacteria 2792
259 Ga0307411_10129945 3300032005 Bacteria 1839
260 Ga0307411_10134173 3300032005 Bacteria 1814
261 Ga0307415_100000236 3300032126 Bacteria 24111
262 Ga0307415_100001206 3300032126 Bacteria 12121
263 Ga0307415_100002401 3300032126 Bacteria 9339
264 Ga0307415_100006824 3300032126 Bacteria 6194
265 Ga0307415_100013645 3300032126 Bacteria 4749
266 Ga0395899_0001237 3300037312 Bacteria 22285
267 Ga0395899_0004313 3300037312 Bacteria 11105
268 Ga0395899_0019866 3300037312 Bacteria 5097
269 Ga0395899_0040275 3300037312 Bacteria 3494
270 Ga0395899_0040562 3300037312 Bacteria 3481
271 Ga0395900_0000471 3300037418 Bacteria 57583
272 Ga0395900_0002014 3300037418 Bacteria 22902
273 Ga0395900_0002834 3300037418 Bacteria 18925
274 Ga0395900_0005364 3300037418 Bacteria 13434
275 Ga0395900_0005999 3300037418 Bacteria 12682
276 Ga0395900_0006581 3300037418 Bacteria 12094
277 Ga0395900_0094657 3300037418 Bacteria 3068
278 Ga0395898_0002475 3300037466 Bacteria 21781
279 Ga0395898_0007554 3300037466 Bacteria 11543
280 Ga0395898_0014046 3300037466 Bacteria 8229
281 Ga0395898_0062565 3300037466 Bacteria 3614
282 Ga0395898_0084978 3300037466 Bacteria 3050
283 Ga0395898_0091344 3300037466 Bacteria 2929
284 Ga0395905_0002920 3300037471 Bacteria 18627
285 Ga0395905_0005254 3300037471 Bacteria 13250
286 Ga0395905_0018305 3300037471 Bacteria 6649
287 Ga0395905_0057898 3300037471 Bacteria 3624
288 Ga0395905_0198077 3300037471 Bacteria 1883
289 Ga0395901_0000064 3300038443 Bacteria 147477
290 Ga0395901_0000348 3300038443 Bacteria 56412
291 Ga0395901_0014057 3300038443 Bacteria 8148
292 Ga0395901_0017920 3300038443 Bacteria 7228
293 Ga0395901_0022412 3300038443 Bacteria 6472
294 Ga0395901_0056172 3300038443 Bacteria 4095
295 Ga0439432_009607 3300042006 Bacteria 3371
296 Ga0450905_002484 3300042142 Bacteria 2369
297 Ga0450889_000010 3300042144 Bacteria 16756
298 Ga0466969_0001967 3300044656 Bacteria 10987
299 Ga0466966_0000027 3300044684 Bacteria 106520
300 Ga0466961_0007104 3300044693 Bacteria 7122
301 Ga0466963_0041984 3300044694 Bacteria 3001
302 Ga0466971_0022957 3300044719 Bacteria 2780
303 Ga0466970_0008283 3300044765 Bacteria 5228
304 Ga0466957_0000189 3300044842 Bacteria 28184
305 Ga0466958_0001056 3300045836 Bacteria 12613
306 Ga0466967_0012837 3300045976 Bacteria 6438
307 Ga0495585_0044796 3300046492 Bacteria 2471
308 Ga0495583_0000656 3300046506 Bacteria 45452
309 Ga0495616_0041468 3300046513 Bacteria 2348
310 Ga0495663_0000729 3300046525 Bacteria 11286
311 Ga0495663_0008974 3300046525 Bacteria 2771
312 Ga0495654_0033360 3300046530 Bacteria 2606
313 Ga0495621_0000042 3300046539 Bacteria 25037
314 Ga0495621_0000659 3300046539 Bacteria 8719
315 Ga0495622_0006830 3300046557 Bacteria 5297
316 Ga0495633_0001268 3300046558 Bacteria 20101
317 Ga0495668_0000001 3300046616 Bacteria 1013420
318 Ga0495625_0000332 3300046660 Bacteria 71947
319 Ga0495625_0000830 3300046660 Bacteria 42448
320 Ga0495669_0001708 3300046684 Bacteria 8992
321 Ga0495669_0005962 3300046684 Bacteria 5083
322 Ga0495670_0000917 3300046691 Bacteria 14235
323 Ga0495677_0013697 3300047445 Bacteria 2951
324 Ga0495677_0021517 3300047445 Bacteria 2337
325 Ga0495686_0000137 3300047472 Bacteria 148290
326 Ga0496107_0029394 3300048910 Bacteria 3909
327 Ga0496107_0099105 3300048910 Bacteria 2135
328 Ga0496110_0006638 3300048913 Bacteria 9192
329 Ga0496110_0037071 3300048913 Bacteria 4237
330 Ga0496111_0020824 3300048914 Bacteria 4572
331 Ga0496111_0084336 3300048914 Bacteria 2322
332 Ga0496112_0004521 3300048915 Bacteria 11813
333 Ga0496112_0081481 3300048915 Bacteria 3200
334 Ga0496122_0000603 3300048925 Bacteria 73878
335 Ga0496123_0000155 3300048926 Bacteria 139646
336 Ga0496123_0003121 3300048926 Bacteria 18996
337 Ga0501033_0047961 3300049570 Bacteria 3174
338 Ga0501036_0036562 3300049572 Bacteria 4155
339 Ga0501038_0053640 3300049574 Bacteria 3470
340 Ga0501043_0022420 3300049579 Bacteria 4953
341 Ga0501047_0070172 3300049581 Bacteria 3373
342 Ga0501233_001554 3300049668 Bacteria 3934
343 Ga0501044_0038121 3300049823 Bacteria 5019
344 nmdc:mga06r32_14706_c1 3300050510 Bacteria 7103
345 Ga0500643_001260 3300053087 Bacteria 14986
346 Ga0500555_000433 3300053103 Bacteria 17315
347 Ga0500568_0004158 3300053139 Bacteria 7814
348 Ga0500604_0000062 3300053151 Bacteria 39474
349 Ga0500616_0000087 3300053153 Bacteria 192225
350 Ga0500616_0001216 3300053153 Bacteria 26011
351 Ga0500627_0000047 3300053158 Bacteria 59191
352 2600227827 2599185359 Bacteria 4772316
353 2643822961 2643221560 Bacteria 4801179
354 2643835423 2643221563 Bacteria 4726935
355 2644056349 2643221608 Bacteria 4724829
356 2644127012 2643221622 Bacteria 4212502
357 2830075719 2830075706 Bacteria 3855215
358 2852655024 2852653556 Bacteria 4050083
359 2852681500 2852680915 Bacteria 4100189
360 2885428158 2885427238 Bacteria 2291351
361 2896430335 2896429255 Bacteria 2557483
362 8057103577 8057101203 Bacteria 5034064
363 Ga0055530_10003042
364 JGI24736J21556_1000580
365 JGI25165J46597_1000012
366 JGI25153J46596_10009312
367 Ga0055537_1001525
368 Ga0055524_1000180
369 Ga0055531_10016158
370 Ga0065715_10001063
371 Ga0070658_10028539
372 Ga0070658_10081659
373 Ga0070658_10109595
374 Ga0070676_10006252
375 Ga0070670_100001124
376 Ga0070670_100009336
377 Ga0070670_100011159
378 Ga0070670_100047043
379 Ga0070677_10001240
380 Ga0070677_10003297
381 Ga0070677_10036717
382 Ga0070666_10000595
383 Ga0070680_100059084
384 Ga0070680_100122704
385 Ga0068868_100002448
386 Ga0070660_100068051
387 Ga0070687_100021806
388 Ga0070668_100000060
389 Ga0070668_100001173
390 Ga0070668_100094812
391 Ga0070669_100099017
392 Ga0070675_100000575
393 Ga0070675_100004698
394 Ga0070675_100098177
395 Ga0070675_100139613
396 Ga0070671_100000312
397 Ga0070671_100000830
398 Ga0070671_100069152
399 Ga0070671_100074858
400 Ga0070671_100146161
401 Ga0070674_100011587
402 Ga0070673_100006313
403 Ga0070673_100021083
404 Ga0070673_100033268
405 Ga0070673_100093107
406 Ga0070659_100008209
407 Ga0070659_100036873
408 Ga0070667_100003117
409 Ga0070667_100007870
410 Ga0070667_100049153
411 Ga0070709_10007938
412 Ga0070714_100052648
413 Ga0070714_100103361
414 Ga0070663_100002400
415 Ga0070663_100043222
416 Ga0070663_100056199
417 Ga0070678_100005684
418 Ga0070678_100063537
419 Ga0070678_100070728
420 Ga0070662_100014338
421 Ga0070662_100123812
422 Ga0070681_10071859
423 Ga0070679_100011152
424 Ga0070672_100044350
425 Ga0070672_100055262
426 Ga0070695_100031993
427 Ga0070696_100005517
428 Ga0070696_100017592
429 Ga0070665_100000265
430 Ga0070665_100013703
431 Ga0070665_100032686
432 Ga0070704_100105546
433 Ga0068855_100052475
434 Ga0070664_100002595
435 Ga0070664_100009513
436 Ga0068854_100028873
437 Ga0068854_100033027
438 Ga0068856_100145999
439 Ga0068852_100043638
440 Ga0068852_100155271
441 Ga0068863_100000001
442 Ga0068858_100002172
443 Ga0068858_100002327
444 Ga0068860_100005047
445 Ga0068860_100005865
446 Ga0068860_100086562
447 Ga0068862_100015083
448 Ga0081539_10016507
449 Ga0075431_100013009
450 Ga0068865_100025977
451 Ga0105240_10018059
452 Ga0111539_10087435
453 Ga0105248_10003215
454 Ga0105248_10025767
455 Ga0105248_10063148
456 Ga0105237_10140928
457 Ga0105238_10043517
458 Ga0157373_10003233
459 Ga0157373_10015750
460 Ga0157373_10083392
461 Ga0157373_10085375
462 Ga0157371_10010149
463 Ga0157371_10015926
464 Ga0157369_10190433
465 Ga0157374_10018680
466 Ga0157378_10088681
467 Ga0157372_10096331
468 Ga0157375_10020007
469 Ga0157375_10083078
470 Ga0163163_10002880
471 Ga0157376_10074744
472 Ga0163161_10154282
473 Ga0209233_1000058
474 Ga0209565_1000012
475 Ga0209675_1000097
476 Ga0209675_1004612
477 Ga0209676_1000085
478 Ga0209676_1003815
479 Ga0209676_1005610
480 Ga0209676_1009502
481 Ga0209025_1046696
482 Ga0209050_1001116
483 Ga0209050_1012244
484 Ga0209256_1000012
485 Ga0209257_1002426
486 Ga0209257_1006233
487 Ga0207682_10005566
488 Ga0207682_10027912
489 Ga0207642_10012569
490 Ga0207680_10001153
491 Ga0207647_10044851
492 Ga0207699_10033669
493 Ga0207645_10063998
494 Ga0207705_10000070
495 Ga0207705_10003711
496 Ga0207705_10006499
497 Ga0207705_10010236
498 Ga0207705_10024576
499 Ga0207705_10024708
500 Ga0207705_10064436
501 Ga0207695_10005011
502 Ga0207662_10019517
503 Ga0207657_10004146
504 Ga0207657_10005557
505 Ga0207657_10026787
506 Ga0207657_10026997
507 Ga0207657_10031497
508 Ga0207657_10032597
509 Ga0207657_10032967
510 Ga0207657_10057556
511 Ga0207657_10107859
512 Ga0207649_10000160
513 Ga0207652_10011362
514 Ga0207652_10028037
515 Ga0207681_10060685
516 Ga0207650_10013028
517 Ga0207650_10017443
518 Ga0207664_10014663
519 Ga0207644_10000012
520 Ga0207644_10002679
521 Ga0207706_10002192
522 Ga0207704_10018373
523 Ga0207691_10053285
524 Ga0207691_10106183
525 Ga0207711_10002415
526 Ga0207711_10012227
527 Ga0207661_10005405
528 Ga0207679_10009186
529 Ga0207679_10133740
530 Ga0207667_10066338
531 Ga0207651_10003328
532 Ga0207651_10005950
533 Ga0207651_10012171
534 Ga0207668_10000056
535 Ga0207668_10000064
536 Ga0207668_10077572
537 Ga0207640_10003482
538 Ga0207640_10013081
539 Ga0207658_10004841
540 Ga0207658_10020307
541 Ga0207658_10038468
542 Ga0207677_10002369
543 Ga0207703_10001679
544 Ga0207703_10001758
545 Ga0207703_10006767
546 Ga0207678_10002786
547 Ga0207678_10009972
548 Ga0207702_10213449
549 Ga0207702_10223532
550 Ga0207641_10000001
551 Ga0207648_10029854
552 Ga0207674_10000139
553 Ga0207674_10027624
554 Ga0207674_10063632
555 Ga0207683_10057461
556 Ga0207683_10189446
557 Ga0209974_10002369
558 Ga0209974_10002503
559 Ga0268266_10023301
560 Ga0268265_10039417
561 Ga0268265_10056798
562 Ga0268265_10185776
563 Ga0268264_10020030
564 Ga0268264_10021231
565 Ga0307513_10091248
566 Ga0307408_100017550
567 Ga0307408_100154905
568 Ga0307508_10008660
569 Ga0307405_10008299
570 Ga0307405_10028319
571 Ga0307405_10108736
572 Ga0307413_10001081
573 Ga0307413_10001300
574 Ga0307413_10002029
575 Ga0307413_10003894
576 Ga0307413_10017119
577 Ga0307413_10019358
578 Ga0307413_10070417
579 Ga0307413_10083282
580 Ga0307413_10084966
581 Ga0307410_10007164
582 Ga0307410_10008866
583 Ga0307410_10012695
584 Ga0307410_10046223
585 Ga0307410_10053360
586 Ga0307406_10005346
587 Ga0307406_10051710
588 Ga0307406_10066225
589 Ga0307407_10003336
590 Ga0307407_10006374
591 Ga0307412_10000247
592 Ga0307409_100003497
593 Ga0307409_100007606
594 Ga0307409_100011892
595 Ga0307409_100012668
596 Ga0307409_100015654
597 Ga0307409_100073335
598 Ga0307409_100091575
599 Ga0307416_100005934
600 Ga0307416_100047919
601 Ga0307416_100117324
602 Ga0307416_100161581
603 Ga0307414_10000443
604 Ga0307414_10002225
605 Ga0307414_10002497
606 Ga0307414_10009027
607 Ga0307414_10009781
608 Ga0307414_10012297
609 Ga0307414_10032378
610 Ga0307414_10051855
611 Ga0307414_10083026
612 Ga0307414_10098651
613 Ga0307411_10000293
614 Ga0307411_10005245
615 Ga0307411_10006811
616 Ga0307411_10014928
617 Ga0307411_10016234
618 Ga0307411_10018967
619 Ga0307411_10024497
620 Ga0307411_10046763
621 Ga0307411_10129945
622 Ga0307411_10134173
623 Ga0307415_100000236
624 Ga0307415_100001206
625 Ga0307415_100002401
626 Ga0307415_100006824
627 Ga0307415_100013645
628 Ga0395899_0001237
629 Ga0395899_0004313
630 Ga0395899_0019866
631 Ga0395899_0040275
632 Ga0395899_0040562
633 Ga0395900_0000471
634 Ga0395900_0002014
635 Ga0395900_0002834
636 Ga0395900_0005364
637 Ga0395900_0005999
638 Ga0395900_0006581
639 Ga0395900_0094657
640 Ga0395898_0002475
641 Ga0395898_0007554
642 Ga0395898_0014046
643 Ga0395898_0062565
644 Ga0395898_0084978
645 Ga0395898_0091344
646 Ga0395905_0002920
647 Ga0395905_0005254
648 Ga0395905_0018305
649 Ga0395905_0057898
650 Ga0395905_0198077
651 Ga0395901_0000064
652 Ga0395901_0000348
653 Ga0395901_0014057
654 Ga0395901_0017920
655 Ga0395901_0022412
656 Ga0395901_0056172
657 Ga0439432_009607
658 Ga0450905_002484
659 Ga0450889_000010
660 Ga0466969_0001967
661 Ga0466966_0000027
662 Ga0466961_0007104
663 Ga0466963_0041984
664 Ga0466971_0022957
665 Ga0466970_0008283
666 Ga0466957_0000189
667 Ga0466958_0001056
668 Ga0466967_0012837
669 Ga0495585_0044796
670 Ga0495583_0000656
671 Ga0495616_0041468
672 Ga0495663_0000729
673 Ga0495663_0008974
674 Ga0495654_0033360
675 Ga0495621_0000042
676 Ga0495621_0000659
677 Ga0495622_0006830
678 Ga0495633_0001268
679 Ga0495668_0000001
680 Ga0495625_0000332
681 Ga0495625_0000830
682 Ga0495669_0001708
683 Ga0495669_0005962
684 Ga0495670_0000917
685 Ga0495677_0013697
686 Ga0495677_0021517
687 Ga0495686_0000137
688 Ga0496107_0029394
689 Ga0496107_0099105
690 Ga0496110_0006638
691 Ga0496110_0037071
692 Ga0496111_0020824
693 Ga0496111_0084336
694 Ga0496112_0004521
695 Ga0496112_0081481
696 Ga0496122_0000603
697 Ga0496123_0000155
698 Ga0496123_0003121
699 Ga0501033_0047961
700 Ga0501036_0036562
701 Ga0501038_0053640
702 Ga0501043_0022420
703 Ga0501047_0070172
704 Ga0501233_001554
705 Ga0501044_0038121
706 nmdc:mga06r32_14706_c1
707 Ga0500643_001260
708 Ga0500555_000433
709 Ga0500568_0004158
710 Ga0500604_0000062
711 Ga0500616_0000087
712 Ga0500616_0001216
713 Ga0500627_0000047
714 2600227827
715 2643822961
716 2643835423
717 2644056349
718 2644127012
719 2830075719
720 2852655024
721 2852681500
722 2885428158
723 2896430335
724 8057103577

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12362

DUF3646

DNA polymerase III gamma and tau subunits C terminal

525

637

0.98

PF12169

DNA_pol3_gamma3

DNA polymerase III subunits gamma and tau domain III

391

486

0.96

PF22608

DNAX_ATPase_lid

DNA polymerase III clamp loader subunit, ATPase lid domain

311

358

0.96

PF13177

DNA_pol3_delta2

DNA polymerase III, delta subunit

143

307

0.95

PF00004

AAA

ATPase family associated with various cellular activities (AAA)

164

308

0.75

Structural Annotation

Top 5 Hits

ID Description Score Start End
1njf-assembly4.cif.gz_D nucleotide bound form of an isolated e. coli clamp loader gamma subunit 0.849 25 267
1njf-assembly4.cif.gz_D nucleotide bound form of an isolated e. coli clamp loader gamma subunit 0.8426 25 267
2chg-assembly3.cif.gz_C replication factor c domains 1 and 2 0.8266 23 266
2chg-assembly3.cif.gz_C replication factor c domains 1 and 2 0.8199 23 266
6vvo-assembly1.cif.gz_D structure of the human clamp loader (replication factor c, rfc) bound to the sliding clamp (proliferating cell nuclear antigen, pcna) 0.8111 27 387
ID Description Score Start End Superfamily
af_A0A1D6E842_267_330_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9818 203 266 1.10.8.60
af_A0A0P0Y837_577_637_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.98 208 266 1.10.8.60
af_Q54BN3_188_243_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9788 204 252 1.10.8.60
af_F4KEM0_516_577_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.978 208 265 1.10.8.60
af_Q2G0T5_170_234_1.10.8.60 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.9773 203 264 1.10.8.60
ID Description Score Start End GO Terms
AF-A0A3C1BVL6-F1-model_v4 DNA polymerase III subunit gamma/tau 0.9437 118 204 GO:0006261
AF-A0A3C1BVL6-F1-model_v4 DNA polymerase III subunit gamma/tau 0.9136 118 204 GO:0006261
AF-A0A7C5WBA6-F1-model_v4 DNA polymerase III subunit gamma/tau (EC 2.7.7.7) 0.8902 21 404 GO:0003677
GO:0003887
GO:0005524
GO:0006261
GO:0009360
GO:0016887
GO:0046872
AF-A0A7C5CFY0-F1-model_v4 DNA polymerase III subunit gamma/tau (EC 2.7.7.7) 0.8692 25 266 GO:0003887
GO:0005524
GO:0006261
GO:0009360
GO:0016887
GO:0046872
AF-A0A661WX54-F1-model_v4 DNA polymerase III subunit gamma/tau (EC 2.7.7.7) 0.8643 23 268 GO:0003887
GO:0005524
GO:0006261
GO:0009360
GO:0016887
GO:0046872

Map