F414913

General Info

Members Datasets Scaffolds Average Seq Length
341 215 682 337

Family's Representative Sequence

Representative Sequence 3300049570|Ga0501033_0006547|Ga0501033_0006547_6644_7780
Length 378
Sequence VSEREGTTPQRSRRARDPRAAPTIYDVARAAEVAPSTVSRAFSRPDRVNAETAARIRAIAADLGYRTNPLARALPTGQTSMIALASSDITNPYYFEIIRGAQAAAAERGYTTLLADAQESVTLEREALERAIPTVEGIVLASTRMSDSAIRMLAKQRPLIAVNRDITDVPNVVTDHAMSVRQAVDHLAELGHHQITFLSGPEAAWANGMRWRSLRLYAAERDVHVRRLGPYPPTAAGGARAAEDFREHRTSSVIAYNDLVAIGFMRRAAAMGARIPADVSVVGFDNIFVSALTSPGLTTVAPPLRTLGSMAVHNLLALIGGASPTAVRPLALPTRLYVRESTTTPPARRRPWRSVATPAPSAPRNTATTRGNRLPPPR

Samples

Sample ID Description Type Environment
1 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
6 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
14 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
15 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
16 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
17 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
18 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
19 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
20 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
21 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
23 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
24 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
25 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
26 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
27 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
28 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
29 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
30 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
31 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
32 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
33 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
34 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
48 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
49 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
50 3300031889 Wild Oat associated soil bacterial communities from Lone Jack Road, Encinitas, CA, USA - WO Metagenome Rhizosphere
51 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
52 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
53 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
54 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
55 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
56 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
57 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
58 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
59 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
60 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
61 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
62 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
63 3300042011 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z062817_5204 Metagenome Rhizosphere
64 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
65 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
66 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
67 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
68 3300042137 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_072516_1519 Metagenome Rhizosphere
69 3300042142 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913L_E14_072516_1610 Metagenome Rhizosphere
70 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
71 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
72 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
73 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
74 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
75 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
76 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
77 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
78 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
79 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
80 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
81 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
82 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
83 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
84 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
85 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
86 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
87 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
88 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
89 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
90 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
91 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
92 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
93 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
94 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
95 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
96 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
97 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
98 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
99 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
100 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
101 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
102 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
103 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
104 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
105 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
106 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
107 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
108 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
109 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
110 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
111 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
112 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
113 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
114 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
115 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
116 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
117 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
118 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
119 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
120 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
121 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
122 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
123 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
124 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
125 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
126 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
127 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
128 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
129 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
130 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
131 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
132 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
133 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
134 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
135 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
136 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
137 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
138 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
139 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
140 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
141 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
142 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
143 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
144 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
145 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
146 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
147 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
148 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
149 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
150 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
151 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
152 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
153 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
154 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
155 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
156 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
157 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
158 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
159 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
160 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
161 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
162 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
163 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
164 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
165 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
166 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
167 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
168 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
169 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
170 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
171 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
172 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
173 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
174 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
175 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
176 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
177 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
178 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
179 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
180 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
181 2643221556 Massilia sp. Root1485 Isolate Unclassified
182 2643221684 Massilia sp. Root133 Isolate Unclassified
183 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
184 2643221722 Cellulomonas sp. Root930 Isolate Unclassified
185 2739367654 Promicromonospora sp. YR516 Isolate Unclassified
186 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
187 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
188 2772190715 Micromonospora chokoriensis NRRL B-24750 Isolate Unclassified
189 2808606394 Promicromonospora sp. C35 Isolate Unclassified
190 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
191 2848551377 Brachybacterium saurashtrense DSM 23186 Isolate Unclassified
192 2855670206 Micromonospora noduli Lupac 07 Isolate Nodule
193 2855676851 Micromonospora saelicesensis GAR05 Isolate Unclassified
194 2857288857 Micromonospora noduli ONO23 Isolate Unclassified
195 2858848962 Micromonospora saelicesensis GAR06 Isolate Unclassified
196 2858882152 Micromonospora noduli MED15 Isolate Nodule
197 2858888857 Micromonospora saelicesensis Lupac 06 Isolate Unclassified
198 2858895516 Micromonospora saelicesensis PSN13 Isolate Unclassified
199 2869048445 Micromonospora saelicesensis PSN01 Isolate Unclassified
200 2869061728 Micromonospora noduli ONO86 Isolate Unclassified
201 2869068681 Micromonospora noduli GUI43 Isolate Unclassified
202 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
203 2880495981 Micromonospora vinacea DSM 101695 Isolate Unclassified
204 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
205 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
206 2893684298 Kocuria palustris DSM 11925 Isolate Rhizosphere
207 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
208 2929219909 Micromonospora sp. R-75348 Hybrid assembly Isolate Unclassified
209 2929226422 Micromonospora sp. R-74116 Hybrid assembly Isolate Unclassified
210 8003830390 Micromonospora parastrephiae STR1_7 Isolate Rhizosphere
211 8047673197 Telluria mixta LMG 11547 Isolate Rhizosphere
212 8054704163 Micromonospora trifolii NIE79 Isolate Nodule
213 8054727385 Micromonospora alfalfae MED01 Isolate Nodule
214 8054734606 Micromonospora hortensis NIE111 Isolate Nodule
215 8056579771 Promicromonospora iranensis UTMC 00792 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.15
Metatranscriptomes 0.59
Isolates 10.26

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.17
Nodule 1.47
Rhizoplane 7.62
Rhizosphere 78.89
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0501033_0006547 3300049570 Bacteria 9111
2 JGI25406J46586_10065322 3300003203 Bacteria 1160
3 rootH2_10043132 3300003320 Bacteria 2200
4 rootL2_10077955 3300003322 Bacteria 4937
5 Ga0055542_1015326 3300003762 Bacteria 1235
6 Ga0065165_1002492 3300005262 Bacteria 15437
7 Ga0065165_1013962 3300005262 Bacteria 3148
8 Ga0070658_10046869 3300005327 Bacteria 3498
9 Ga0070682_100053755 3300005337 Bacteria 2525
10 Ga0070674_100158947 3300005356 Bacteria 1713
11 Ga0070679_100107345 3300005530 Bacteria 2778
12 Ga0070684_100106971 3300005535 Bacteria 2505
13 Ga0068855_100209549 3300005563 Bacteria 2191
14 Ga0070664_100038586 3300005564 Bacteria 4021
15 Ga0068864_100125590 3300005618 Bacteria 2299
16 Ga0068861_100213188 3300005719 Bacteria 1628
17 Ga0068870_10055862 3300005840 Bacteria 2105
18 Ga0068870_10079893 3300005840 Bacteria 1806
19 Ga0081538_10000478 3300005981 Bacteria 44979
20 Ga0081538_10001070 3300005981 Bacteria 29102
21 Ga0081538_10008238 3300005981 Bacteria 8883
22 Ga0081539_10002396 3300005985 Bacteria 26640
23 Ga0081539_10050505 3300005985 Bacteria 2353
24 Ga0081539_10091425 3300005985 Bacteria 1572
25 Ga0075428_100242102 3300006844 Bacteria 1946
26 Ga0105245_10036456 3300009098 Bacteria 4368
27 Ga0105245_10049409 3300009098 Bacteria 3767
28 Ga0114129_10007810 3300009147 Bacteria 15218
29 Ga0105242_10552850 3300009176 Bacteria 1104
30 Ga0105248_10317358 3300009177 Bacteria 1755
31 Ga0105238_10303924 3300009551 Bacteria 1579
32 Ga0105239_10124282 3300010375 Bacteria 2867
33 Ga0105246_10153663 3300011119 Bacteria 1745
34 Ga0157374_10228256 3300013296 Bacteria 1828
35 Ga0157372_10156030 3300013307 Bacteria 2637
36 Ga0163163_10272328 3300014325 Bacteria 1744
37 Ga0157380_10056813 3300014326 Bacteria 3114
38 Ga0157380_10199359 3300014326 Bacteria 1774
39 Ga0157377_10153670 3300014745 Bacteria 1425
40 Ga0163161_10157524 3300017792 Bacteria 1730
41 Ga0206353_10483065 3300020082 Bacteria 2169
42 Ga0206353_10953193 3300020082 Bacteria 2729
43 Ga0209148_1000852 3300025254 Bacteria 21457
44 Ga0207688_10080693 3300025901 Bacteria 1857
45 Ga0207688_10105618 3300025901 Bacteria 1630
46 Ga0207643_10040481 3300025908 Bacteria 2624
47 Ga0207657_10203214 3300025919 Bacteria 1593
48 Ga0207687_10066396 3300025927 Bacteria 2564
49 Ga0207706_10273416 3300025933 Bacteria 1474
50 Ga0207669_10126922 3300025937 Bacteria 1745
51 Ga0207661_10007853 3300025944 Bacteria 7601
52 Ga0207678_10139875 3300026067 Bacteria 2066
53 Ga0207676_10450123 3300026095 Bacteria 1214
54 Ga0207683_10080570 3300026121 Bacteria 2889
55 Ga0207683_10113433 3300026121 Bacteria 2427
56 Ga0207683_10346344 3300026121 Bacteria 1363
57 Ga0207698_10123744 3300026142 Bacteria 2195
58 Ga0268266_10053352 3300028379 Bacteria 3473
59 Ga0307405_10068970 3300031731 Bacteria 2265
60 Ga0307413_10032179 3300031824 Bacteria 2970
61 Ga0307413_10085785 3300031824 Bacteria 2034
62 Ga0307410_10038798 3300031852 Bacteria 3123
63 Ga0326468_10000658 3300031889 Bacteria 3549
64 Ga0307406_10004726 3300031901 Bacteria 7418
65 Ga0307409_100026841 3300031995 Bacteria 4070
66 Ga0307409_100037448 3300031995 Bacteria 3576
67 Ga0307416_100010430 3300032002 Bacteria 6135
68 Ga0307414_10052386 3300032004 Bacteria 2840
69 Ga0307415_100005162 3300032126 Bacteria 6892
70 Ga0395899_0063846 3300037312 Bacteria 2708
71 Ga0395900_0062307 3300037418 Bacteria 3833
72 Ga0395900_0191843 3300037418 Bacteria 2072
73 Ga0395905_0077087 3300037471 Bacteria 3123
74 Ga0395901_0072980 3300038443 Bacteria 3578
75 Ga0395901_0118335 3300038443 Bacteria 2783
76 Ga0451853_3296011 3300041512 Bacteria 2369
77 Ga0439448_0000223 3300042005 Bacteria 12042
78 Ga0439448_0000919 3300042005 Bacteria 7246
79 Ga0439450_000037 3300042008 Bacteria 11042
80 Ga0439454_002117 3300042011 Bacteria 2043
81 Ga0439455_0001389 3300042012 Bacteria 4027
82 Ga0439463_000437 3300042016 Bacteria 11648
83 Ga0450911_003499 3300042115 Bacteria 2754
84 Ga0450900_000061 3300042136 Bacteria 5248
85 Ga0450902_005288 3300042137 Bacteria 1944
86 Ga0450905_003105 3300042142 Bacteria 2170
87 Ga0439458_0014158 3300042157 Bacteria 1799
88 Ga0439444_0000449 3300042437 Bacteria 4594
89 Ga0439464_0000697 3300042439 Bacteria 7277
90 Ga0439460_0000610 3300042461 Bacteria 7893
91 Ga0439440_0000040 3300042993 Bacteria 16382
92 Ga0466966_0010963 3300044684 Bacteria 6016
93 Ga0466961_0152440 3300044693 Bacteria 1443
94 Ga0466961_0195793 3300044693 Bacteria 1251
95 Ga0466959_0037513 3300045049 Bacteria 3581
96 Ga0495627_005539 3300046453 Bacteria 5064
97 Ga0495627_023454 3300046453 Bacteria 2021
98 Ga0495590_0000070 3300046457 Bacteria 71704
99 Ga0495590_0000087 3300046457 Bacteria 60113
100 Ga0495591_000534 3300046458 Bacteria 29481
101 Ga0495591_005639 3300046458 Bacteria 5739
102 Ga0495653_0034554 3300046463 Bacteria 3998
103 Ga0495653_0034684 3300046463 Bacteria 3986
104 Ga0495650_0000085 3300046471 Bacteria 235655
105 Ga0495582_0010323 3300046473 Bacteria 5138
106 Ga0495605_0000249 3300046474 Bacteria 63652
107 Ga0495605_0010270 3300046474 Bacteria 5243
108 Ga0495605_0018784 3300046474 Bacteria 3700
109 Ga0495605_0073443 3300046474 Bacteria 1611
110 Ga0495605_0103198 3300046474 Bacteria 1308
111 Ga0495639_0031939 3300046475 Bacteria 2347
112 Ga0495664_0077294 3300046477 Bacteria 1993
113 Ga0495584_0000080 3300046491 Bacteria 67621
114 Ga0495584_0000706 3300046491 Bacteria 21998
115 Ga0495584_0003827 3300046491 Bacteria 8180
116 Ga0495584_0006596 3300046491 Bacteria 6064
117 Ga0495585_0060138 3300046492 Bacteria 2091
118 Ga0495585_0070154 3300046492 Bacteria 1911
119 Ga0495596_0000456 3300046500 Bacteria 26005
120 Ga0495596_0014645 3300046500 Bacteria 3301
121 Ga0495596_0034995 3300046500 Bacteria 1992
122 Ga0495607_0001482 3300046501 Bacteria 20850
123 Ga0495607_0005639 3300046501 Bacteria 8924
124 Ga0495607_0008299 3300046501 Bacteria 7102
125 Ga0495607_0044683 3300046501 Bacteria 2610
126 Ga0495583_0000367 3300046506 Bacteria 70310
127 Ga0495583_0002255 3300046506 Bacteria 16943
128 Ga0495583_0013088 3300046506 Bacteria 4651
129 Ga0495583_0069971 3300046506 Bacteria 1544
130 Ga0495606_0011283 3300046507 Bacteria 7306
131 Ga0495606_0028747 3300046507 Bacteria 3915
132 Ga0495606_0053801 3300046507 Bacteria 2610
133 Ga0495610_0000274 3300046512 Bacteria 53842
134 Ga0495610_0053908 3300046512 Bacteria 1945
135 Ga0495616_0001673 3300046513 Bacteria 15133
136 Ga0495616_0007424 3300046513 Bacteria 6561
137 Ga0495616_0022193 3300046513 Bacteria 3429
138 Ga0495616_0030125 3300046513 Bacteria 2855
139 Ga0495616_0053808 3300046513 Bacteria 1999
140 Ga0495628_0342796 3300046516 Bacteria 1100
141 Ga0495631_0001188 3300046518 Bacteria 16063
142 Ga0495631_0025586 3300046518 Bacteria 2717
143 Ga0495631_0037993 3300046518 Bacteria 2142
144 Ga0495632_0000090 3300046519 Bacteria 93838
145 Ga0495632_0000107 3300046519 Bacteria 85396
146 Ga0495632_0060901 3300046519 Bacteria 1832
147 Ga0495637_0000286 3300046520 Bacteria 39443
148 Ga0495637_0029819 3300046520 Bacteria 2425
149 Ga0495643_0001453 3300046522 Bacteria 21799
150 Ga0495643_0031418 3300046522 Bacteria 2954
151 Ga0495643_0046370 3300046522 Bacteria 2356
152 Ga0495644_0005478 3300046523 Bacteria 4957
153 Ga0495648_0000225 3300046524 Bacteria 64644
154 Ga0495648_0006323 3300046524 Bacteria 9688
155 Ga0495666_0023512 3300046526 Bacteria 3047
156 Ga0495642_0004296 3300046528 Bacteria 5539
157 Ga0495642_0005283 3300046528 Bacteria 4962
158 Ga0495642_0008077 3300046528 Bacteria 4026
159 Ga0495642_0025787 3300046528 Bacteria 2331
160 Ga0495654_0003028 3300046530 Bacteria 10473
161 Ga0495665_0040319 3300046531 Bacteria 2487
162 Ga0495587_0011227 3300046536 Bacteria 5679
163 Ga0495587_0047122 3300046536 Bacteria 2556
164 Ga0495609_0000593 3300046538 Bacteria 28388
165 Ga0495609_0001162 3300046538 Bacteria 18168
166 Ga0495609_0012986 3300046538 Bacteria 3940
167 Ga0495597_0000108 3300046542 Bacteria 73202
168 Ga0495597_0000138 3300046542 Bacteria 65518
169 Ga0495645_0031883 3300046543 Bacteria 3842
170 Ga0495633_0000970 3300046558 Bacteria 23545
171 Ga0495667_0180486 3300046559 Bacteria 1355
172 Ga0495668_0000535 3300046616 Bacteria 47216
173 Ga0495668_0001571 3300046616 Bacteria 21615
174 Ga0495668_0014218 3300046616 Bacteria 4674
175 Ga0495668_0021030 3300046616 Bacteria 3746
176 Ga0495668_0021877 3300046616 Bacteria 3659
177 Ga0495668_0037876 3300046616 Bacteria 2697
178 Ga0495668_0041238 3300046616 Bacteria 2572
179 Ga0495634_0006218 3300046642 Bacteria 9097
180 Ga0495611_0000323 3300046648 Bacteria 31631
181 Ga0495611_0100841 3300046648 Bacteria 1340
182 Ga0495625_0049493 3300046660 Bacteria 3021
183 Ga0495625_0151932 3300046660 Bacteria 1556
184 Ga0495661_0001123 3300046665 Bacteria 23398
185 Ga0495661_0007941 3300046665 Bacteria 7371
186 Ga0495661_0029649 3300046665 Bacteria 3490
187 Ga0495661_0078967 3300046665 Bacteria 1902
188 Ga0495661_0162708 3300046665 Bacteria 1196
189 Ga0495588_0000184 3300046674 Bacteria 70692
190 Ga0495588_0022607 3300046674 Bacteria 3108
191 Ga0495588_0025718 3300046674 Bacteria 2935
192 Ga0495623_0007306 3300046679 Bacteria 7170
193 Ga0495623_0016202 3300046679 Bacteria 4814
194 Ga0495658_0067747 3300046683 Bacteria 2065
195 Ga0495669_0018080 3300046684 Bacteria 3028
196 Ga0495669_0021430 3300046684 Bacteria 2804
197 Ga0495670_0013159 3300046691 Bacteria 4069
198 Ga0495671_0003933 3300046692 Bacteria 9008
199 Ga0495649_0000093 3300046694 Bacteria 77036
200 Ga0495589_0000139 3300046794 Bacteria 66597
201 Ga0495589_0007051 3300046794 Bacteria 5894
202 Ga0495600_0018262 3300046809 Bacteria 4466
203 Ga0495660_0000457 3300046810 Bacteria 34003
204 Ga0495660_0006139 3300046810 Bacteria 7133
205 Ga0495660_0014276 3300046810 Bacteria 4600
206 Ga0495660_0032972 3300046810 Bacteria 2906
207 Ga0495660_0034334 3300046810 Bacteria 2839
208 Ga0495660_0037603 3300046810 Bacteria 2695
209 Ga0495660_0038894 3300046810 Bacteria 2643
210 Ga0495581_0132246 3300047315 Bacteria 1454
211 Ga0495604_0048921 3300047317 Bacteria 3287
212 Ga0495674_0303770 3300047319 Bacteria 1303
213 Ga0495672_0000217 3300047320 Bacteria 82349
214 Ga0495672_0000733 3300047320 Bacteria 36063
215 Ga0495672_0004274 3300047320 Bacteria 11786
216 Ga0495672_0005368 3300047320 Bacteria 10191
217 Ga0495672_0024137 3300047320 Bacteria 3923
218 Ga0495676_0045334 3300047321 Bacteria 3580
219 Ga0495676_0068014 3300047321 Bacteria 2754
220 Ga0495676_0213700 3300047321 Bacteria 1333
221 Ga0495680_0054127 3300047322 Bacteria 3118
222 Ga0495680_0086766 3300047322 Bacteria 2354
223 Ga0495683_0000257 3300047323 Bacteria 47846
224 Ga0495683_0018477 3300047323 Bacteria 3604
225 Ga0495683_0030228 3300047323 Bacteria 2764
226 Ga0495687_000193 3300047443 Bacteria 87329
227 Ga0495687_000530 3300047443 Bacteria 45616
228 Ga0495687_001708 3300047443 Bacteria 19474
229 Ga0495677_0000211 3300047445 Bacteria 26799
230 Ga0495677_0001030 3300047445 Bacteria 11203
231 Ga0495677_0054021 3300047445 Bacteria 1482
232 Ga0495679_033220 3300047446 Bacteria 1649
233 Ga0495685_015505 3300047447 Bacteria 2599
234 Ga0495681_0013709 3300047470 Bacteria 4688
235 Ga0495681_0038787 3300047470 Bacteria 2331
236 Ga0495686_0000142 3300047472 Bacteria 143655
237 Ga0495686_0031639 3300047472 Bacteria 3429
238 Ga0495593_0110088 3300047673 Bacteria 1407
239 Ga0495602_0004640 3300048088 Bacteria 14343
240 Ga0495626_0000026 3300048091 Bacteria 207698
241 Ga0495626_0000082 3300048091 Bacteria 128002
242 Ga0495626_0003466 3300048091 Bacteria 10111
243 Ga0495626_0008340 3300048091 Bacteria 5690
244 Ga0495626_0009105 3300048091 Bacteria 5386
245 Ga0495626_0013573 3300048091 Bacteria 4230
246 Ga0496101_0044443 3300048904 Bacteria 3179
247 Ga0496101_0185003 3300048904 Bacteria 1606
248 Ga0496102_0009716 3300048905 Bacteria 8271
249 Ga0496102_0116902 3300048905 Bacteria 2489
250 Ga0496103_0073440 3300048906 Bacteria 2143
251 Ga0496104_0001758 3300048907 Bacteria 18724
252 Ga0496104_0202237 3300048907 Bacteria 1898
253 Ga0496104_0285118 3300048907 Bacteria 1564
254 Ga0496105_0000734 3300048908 Bacteria 22250
255 Ga0496106_0004308 3300048909 Bacteria 10567
256 Ga0496107_0014899 3300048910 Bacteria 5444
257 Ga0496108_0002569 3300048911 Bacteria 14541
258 Ga0496108_0291489 3300048911 Bacteria 1421
259 Ga0496108_0418760 3300048911 Bacteria 1170
260 Ga0496109_0001794 3300048912 Bacteria 17842
261 Ga0496109_0165209 3300048912 Bacteria 2075
262 Ga0496109_0171250 3300048912 Bacteria 2037
263 Ga0496110_0002255 3300048913 Bacteria 14423
264 Ga0496110_0250551 3300048913 Bacteria 1612
265 Ga0496111_0002912 3300048914 Bacteria 10457
266 Ga0496112_0113368 3300048915 Bacteria 2682
267 Ga0496113_0006034 3300048916 Bacteria 7632
268 Ga0496113_0244763 3300048916 Bacteria 1431
269 Ga0496114_0057439 3300048917 Bacteria 3249
270 Ga0496114_0304864 3300048917 Bacteria 1406
271 Ga0496115_0012547 3300048918 Bacteria 6383
272 Ga0496118_0037243 3300048921 Bacteria 3919
273 Ga0496122_0008680 3300048925 Bacteria 10895
274 Ga0496122_0041953 3300048925 Bacteria 3607
275 Ga0496123_0001148 3300048926 Bacteria 39511
276 Ga0496123_0001450 3300048926 Bacteria 33030
277 Ga0496124_0002446 3300048927 Bacteria 24343
278 Ga0496124_0009647 3300048927 Bacteria 9888
279 Ga0496124_0067486 3300048927 Bacteria 2976
280 Ga0496124_0095704 3300048927 Bacteria 2413
281 Ga0496124_0191593 3300048927 Bacteria 1564
282 Ga0496125_0223668 3300048928 Bacteria 1210
283 Ga0495678_000163 3300049459 Bacteria 78292
284 Ga0495678_000457 3300049459 Bacteria 40543
285 Ga0495678_000711 3300049459 Bacteria 30245
286 Ga0495682_0000137 3300049460 Bacteria 63454
287 Ga0495682_0001423 3300049460 Bacteria 12956
288 Ga0495682_0016487 3300049460 Bacteria 2796
289 Ga0501041_0058108 3300049577 Bacteria 2366
290 Ga0501043_0031896 3300049579 Bacteria 4141
291 Ga0501046_0004013 3300049580 Bacteria 13443
292 Ga0501046_0133045 3300049580 Bacteria 1885
293 Ga0501067_0008191 3300049583 Bacteria 5803
294 Ga0501068_0031798 3300049584 Bacteria 3136
295 Ga0501069_0045645 3300049585 Bacteria 2428
296 Ga0501069_0100500 3300049585 Bacteria 1642
297 Ga0501072_0008394 3300049588 Bacteria 7841
298 Ga0501074_0165068 3300049590 Bacteria 1581
299 Ga0501079_0180412 3300049741 Bacteria 1647
300 Ga0501081_0202079 3300049743 Bacteria 1441
301 Ga0501035_0141712 3300049822 Bacteria 2090
302 Ga0501045_0080136 3300049824 Bacteria 2407
303 nmdc:mga05p37_1856_c1 3300050507 Bacteria 24601
304 Ga0495595_0041867 3300053084 Bacteria 2098
305 Ga0501082_0116377 3300060353 Bacteria 2315
306 Ga0530510_0117986 3300061734 Bacteria 1947
307 2643798586 2643221556 Bacteria 7251154
308 2644475592 2643221684 Bacteria 7145183
309 2644503757 2643221690 Bacteria 4654705
310 2644670086 2643221722 Bacteria 4247614
311 2739605892 2739367654 Bacteria 6049412
312 2760307241 2758568522 Bacteria 5953541
313 2760622837 2758568621 Bacteria 5967089
314 2772642992 2772190715 Bacteria 6959372
315 2809029148 2808606394 Bacteria 6248540
316 2839989130 2839986021 Bacteria 3685650
317 2848554066 2848551377 Bacteria 3720646
318 2855673032 2855670206 Bacteria 7120389
319 2855679193 2855676851 Bacteria 7063653
320 2857293774 2857288857 Bacteria 7189066
321 2858851052 2858848962 Bacteria 6963058
322 2858884416 2858882152 Bacteria 7230291
323 2858893670 2858888857 Bacteria 7060307
324 2858896803 2858895516 Bacteria 7378898
325 2869053603 2869048445 Bacteria 6875584
326 2869062993 2869061728 Bacteria 7112407
327 2869069160 2869068681 Bacteria 7205615
328 2880491853 2880489317 Bacteria 7096270
329 2880500451 2880495981 Bacteria 7340502
330 2884995969 2884994152 Bacteria 4492978
331 2887446261 2887443736 Bacteria 4426037
332 2893686298 2893684298 Bacteria 2897960
333 2905928540 2905926851 Bacteria 4423176
334 2929224124 2929219909 Bacteria 6984360
335 2929228956 2929226422 Bacteria 7248583
336 8003831355 8003830390 Bacteria 6541657
337 8047675607 8047673197 Bacteria 7395230
338 8054706350 8054704163 Bacteria 7247792
339 8054727924 8054727385 Bacteria 7558670
340 8054736842 8054734606 Bacteria 6947278
341 8056581450 8056579771 Bacteria 5840325
342 Ga0501033_0006547
343 JGI25406J46586_10065322
344 rootH2_10043132
345 rootL2_10077955
346 Ga0055542_1015326
347 Ga0065165_1002492
348 Ga0065165_1013962
349 Ga0070658_10046869
350 Ga0070682_100053755
351 Ga0070674_100158947
352 Ga0070679_100107345
353 Ga0070684_100106971
354 Ga0068855_100209549
355 Ga0070664_100038586
356 Ga0068864_100125590
357 Ga0068861_100213188
358 Ga0068870_10055862
359 Ga0068870_10079893
360 Ga0081538_10000478
361 Ga0081538_10001070
362 Ga0081538_10008238
363 Ga0081539_10002396
364 Ga0081539_10050505
365 Ga0081539_10091425
366 Ga0075428_100242102
367 Ga0105245_10036456
368 Ga0105245_10049409
369 Ga0114129_10007810
370 Ga0105242_10552850
371 Ga0105248_10317358
372 Ga0105238_10303924
373 Ga0105239_10124282
374 Ga0105246_10153663
375 Ga0157374_10228256
376 Ga0157372_10156030
377 Ga0163163_10272328
378 Ga0157380_10056813
379 Ga0157380_10199359
380 Ga0157377_10153670
381 Ga0163161_10157524
382 Ga0206353_10483065
383 Ga0206353_10953193
384 Ga0209148_1000852
385 Ga0207688_10080693
386 Ga0207688_10105618
387 Ga0207643_10040481
388 Ga0207657_10203214
389 Ga0207687_10066396
390 Ga0207706_10273416
391 Ga0207669_10126922
392 Ga0207661_10007853
393 Ga0207678_10139875
394 Ga0207676_10450123
395 Ga0207683_10080570
396 Ga0207683_10113433
397 Ga0207683_10346344
398 Ga0207698_10123744
399 Ga0268266_10053352
400 Ga0307405_10068970
401 Ga0307413_10032179
402 Ga0307413_10085785
403 Ga0307410_10038798
404 Ga0326468_10000658
405 Ga0307406_10004726
406 Ga0307409_100026841
407 Ga0307409_100037448
408 Ga0307416_100010430
409 Ga0307414_10052386
410 Ga0307415_100005162
411 Ga0395899_0063846
412 Ga0395900_0062307
413 Ga0395900_0191843
414 Ga0395905_0077087
415 Ga0395901_0072980
416 Ga0395901_0118335
417 Ga0451853_3296011
418 Ga0439448_0000223
419 Ga0439448_0000919
420 Ga0439450_000037
421 Ga0439454_002117
422 Ga0439455_0001389
423 Ga0439463_000437
424 Ga0450911_003499
425 Ga0450900_000061
426 Ga0450902_005288
427 Ga0450905_003105
428 Ga0439458_0014158
429 Ga0439444_0000449
430 Ga0439464_0000697
431 Ga0439460_0000610
432 Ga0439440_0000040
433 Ga0466966_0010963
434 Ga0466961_0152440
435 Ga0466961_0195793
436 Ga0466959_0037513
437 Ga0495627_005539
438 Ga0495627_023454
439 Ga0495590_0000070
440 Ga0495590_0000087
441 Ga0495591_000534
442 Ga0495591_005639
443 Ga0495653_0034554
444 Ga0495653_0034684
445 Ga0495650_0000085
446 Ga0495582_0010323
447 Ga0495605_0000249
448 Ga0495605_0010270
449 Ga0495605_0018784
450 Ga0495605_0073443
451 Ga0495605_0103198
452 Ga0495639_0031939
453 Ga0495664_0077294
454 Ga0495584_0000080
455 Ga0495584_0000706
456 Ga0495584_0003827
457 Ga0495584_0006596
458 Ga0495585_0060138
459 Ga0495585_0070154
460 Ga0495596_0000456
461 Ga0495596_0014645
462 Ga0495596_0034995
463 Ga0495607_0001482
464 Ga0495607_0005639
465 Ga0495607_0008299
466 Ga0495607_0044683
467 Ga0495583_0000367
468 Ga0495583_0002255
469 Ga0495583_0013088
470 Ga0495583_0069971
471 Ga0495606_0011283
472 Ga0495606_0028747
473 Ga0495606_0053801
474 Ga0495610_0000274
475 Ga0495610_0053908
476 Ga0495616_0001673
477 Ga0495616_0007424
478 Ga0495616_0022193
479 Ga0495616_0030125
480 Ga0495616_0053808
481 Ga0495628_0342796
482 Ga0495631_0001188
483 Ga0495631_0025586
484 Ga0495631_0037993
485 Ga0495632_0000090
486 Ga0495632_0000107
487 Ga0495632_0060901
488 Ga0495637_0000286
489 Ga0495637_0029819
490 Ga0495643_0001453
491 Ga0495643_0031418
492 Ga0495643_0046370
493 Ga0495644_0005478
494 Ga0495648_0000225
495 Ga0495648_0006323
496 Ga0495666_0023512
497 Ga0495642_0004296
498 Ga0495642_0005283
499 Ga0495642_0008077
500 Ga0495642_0025787
501 Ga0495654_0003028
502 Ga0495665_0040319
503 Ga0495587_0011227
504 Ga0495587_0047122
505 Ga0495609_0000593
506 Ga0495609_0001162
507 Ga0495609_0012986
508 Ga0495597_0000108
509 Ga0495597_0000138
510 Ga0495645_0031883
511 Ga0495633_0000970
512 Ga0495667_0180486
513 Ga0495668_0000535
514 Ga0495668_0001571
515 Ga0495668_0014218
516 Ga0495668_0021030
517 Ga0495668_0021877
518 Ga0495668_0037876
519 Ga0495668_0041238
520 Ga0495634_0006218
521 Ga0495611_0000323
522 Ga0495611_0100841
523 Ga0495625_0049493
524 Ga0495625_0151932
525 Ga0495661_0001123
526 Ga0495661_0007941
527 Ga0495661_0029649
528 Ga0495661_0078967
529 Ga0495661_0162708
530 Ga0495588_0000184
531 Ga0495588_0022607
532 Ga0495588_0025718
533 Ga0495623_0007306
534 Ga0495623_0016202
535 Ga0495658_0067747
536 Ga0495669_0018080
537 Ga0495669_0021430
538 Ga0495670_0013159
539 Ga0495671_0003933
540 Ga0495649_0000093
541 Ga0495589_0000139
542 Ga0495589_0007051
543 Ga0495600_0018262
544 Ga0495660_0000457
545 Ga0495660_0006139
546 Ga0495660_0014276
547 Ga0495660_0032972
548 Ga0495660_0034334
549 Ga0495660_0037603
550 Ga0495660_0038894
551 Ga0495581_0132246
552 Ga0495604_0048921
553 Ga0495674_0303770
554 Ga0495672_0000217
555 Ga0495672_0000733
556 Ga0495672_0004274
557 Ga0495672_0005368
558 Ga0495672_0024137
559 Ga0495676_0045334
560 Ga0495676_0068014
561 Ga0495676_0213700
562 Ga0495680_0054127
563 Ga0495680_0086766
564 Ga0495683_0000257
565 Ga0495683_0018477
566 Ga0495683_0030228
567 Ga0495687_000193
568 Ga0495687_000530
569 Ga0495687_001708
570 Ga0495677_0000211
571 Ga0495677_0001030
572 Ga0495677_0054021
573 Ga0495679_033220
574 Ga0495685_015505
575 Ga0495681_0013709
576 Ga0495681_0038787
577 Ga0495686_0000142
578 Ga0495686_0031639
579 Ga0495593_0110088
580 Ga0495602_0004640
581 Ga0495626_0000026
582 Ga0495626_0000082
583 Ga0495626_0003466
584 Ga0495626_0008340
585 Ga0495626_0009105
586 Ga0495626_0013573
587 Ga0496101_0044443
588 Ga0496101_0185003
589 Ga0496102_0009716
590 Ga0496102_0116902
591 Ga0496103_0073440
592 Ga0496104_0001758
593 Ga0496104_0202237
594 Ga0496104_0285118
595 Ga0496105_0000734
596 Ga0496106_0004308
597 Ga0496107_0014899
598 Ga0496108_0002569
599 Ga0496108_0291489
600 Ga0496108_0418760
601 Ga0496109_0001794
602 Ga0496109_0165209
603 Ga0496109_0171250
604 Ga0496110_0002255
605 Ga0496110_0250551
606 Ga0496111_0002912
607 Ga0496112_0113368
608 Ga0496113_0006034
609 Ga0496113_0244763
610 Ga0496114_0057439
611 Ga0496114_0304864
612 Ga0496115_0012547
613 Ga0496118_0037243
614 Ga0496122_0008680
615 Ga0496122_0041953
616 Ga0496123_0001148
617 Ga0496123_0001450
618 Ga0496124_0002446
619 Ga0496124_0009647
620 Ga0496124_0067486
621 Ga0496124_0095704
622 Ga0496124_0191593
623 Ga0496125_0223668
624 Ga0495678_000163
625 Ga0495678_000457
626 Ga0495678_000711
627 Ga0495682_0000137
628 Ga0495682_0001423
629 Ga0495682_0016487
630 Ga0501041_0058108
631 Ga0501043_0031896
632 Ga0501046_0004013
633 Ga0501046_0133045
634 Ga0501067_0008191
635 Ga0501068_0031798
636 Ga0501069_0045645
637 Ga0501069_0100500
638 Ga0501072_0008394
639 Ga0501074_0165068
640 Ga0501079_0180412
641 Ga0501081_0202079
642 Ga0501035_0141712
643 Ga0501045_0080136
644 nmdc:mga05p37_1856_c1
645 Ga0495595_0041867
646 Ga0501082_0116377
647 Ga0530510_0117986
648 2643798586
649 2644475592
650 2644503757
651 2644670086
652 2739605892
653 2760307241
654 2760622837
655 2772642992
656 2809029148
657 2839989130
658 2848554066
659 2855673032
660 2855679193
661 2857293774
662 2858851052
663 2858884416
664 2858893670
665 2858896803
666 2869053603
667 2869062993
668 2869069160
669 2880491853
670 2880500451
671 2884995969
672 2887446261
673 2893686298
674 2905928540
675 2929224124
676 2929228956
677 8003831355
678 8047675607
679 8054706350
680 8054727924
681 8054736842
682 8056581450

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00356

LacI

Bacterial regulatory proteins, lacI family

23

68

0.99

PF13377

Peripla_BP_3

Periplasmic binding protein-like domain

184

342

0.87

PF00532

Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

78

340

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
2o20-assembly1.cif.gz_A crystal structure of transcription regulator ccpa of lactococcus lactis 0.9151 80 343
2fep-assembly1.cif.gz_A-2 structure of truncated ccpa in complex with p-ser-hpr and sulfate ions 0.9091 82 343
1sxg-assembly3.cif.gz_F structural studies on the apo transcription factor form b. megaterium 0.9074 83 343
1lbi-assembly1.cif.gz_D lac repressor 0.9069 83 345
3k9c-assembly1.cif.gz_A crystal structure of laci transcriptional regulator from rhodococcus species. 0.9068 83 345
ID Description Score Start End Superfamily
2jcgA01 Mainly Alpha;Orthogonal Bundle;434 Repressor (Amino-terminal Domain);lambda repressor-like DNA-binding domains 0.9558 24 68 1.10.260.40
3kkeB02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9426 179 300 3.40.50.2300
2rgyA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9286 177 300 3.40.50.2300
2pafA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9046 177 343 3.40.50.2300
3cs3A02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.902 177 300 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A660QII2-F1-model_v4 LacI family transcriptional regulator 0.9466 176 345 GO:0000976
GO:0003700
AF-A0A6N7VNX2-F1-model_v4 LacI family transcriptional regulator 0.9312 167 345 GO:0000976
GO:0003700
AF-A0A0K8QG33-F1-model_v4 HTH-type transcriptional regulator DegA 0.9311 147 348 GO:0000976
GO:0003700
AF-A0A4V0ZJI8-F1-model_v4 Lactose operon repressor 0.9301 176 353 GO:0000976
GO:0003700
AF-A0A7J9ZZ32-F1-model_v4 Transcriptional regulator LacI/GalR-like sensor domain-containing protein 0.9258 148 354 GO:0000976
GO:0003700

Map