F412797

General Info

Members Datasets Scaffolds Average Seq Length
336 206 312 396

Family's Representative Sequence

Representative Sequence 3300046522|Ga0495643_0070473|Ga0495643_0070473_128_1543
Length 466
Sequence LNILEIYPYPFSSVRSHLIPSVGLSVGLGGSTGFNSGSENAMPWVMGNLTKDQVRDLSAPGRYSDGDGLILKIGPSGGKSWILRVQVNGRRRDIGLGDSQDFSLRAARAAAADLRKLARAGIDPLEERKKQIVVIPTFEEAAELVHAELLKGWKNGKHTDQWLTTLKKYAYPKLGKLRVDQIEGPLIRDVLAEIWLDIPETARRLKQRIGTVLDWSYSKGFRSTEAPMRLISKGLPRQPRKTGHHAAMAHADLPKFLVQLRSKPFNVGRLALEATILTATRSGEVRGARWPELNEDFTVWTVPAKRMKAGVAHSVPLSPQAADVFRQAARIRIKDCDLVFPGQISGSPLSDMTLLEILRGMELPVTVHGFRSTFRDWVADETDYPREVAEAALAHTLENKVEAAYRRTDFFLKRRKLMNDWADYCDSAGITTSRKARAKQTAKRPPEPARLSPTGRKAVSVPGDGR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2510065045 Paraburkholderia sprentiae WSM5005 Isolate Nodule
3 2515154122 Paraburkholderia atlantica JPY251 Isolate Nodule
4 2582581305 Rhizorhabdus wittichii YR128 Isolate Rhizosphere
5 2599185239 Burkholderia sp. NFACC38-1 Isolate Rhizoplane
6 2599185359 Sphingomonas sp. NFR04 Isolate Rhizoplane
7 2738541275 Novosphingobium sp. GV027 Isolate Unclassified
8 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
9 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
10 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
11 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
12 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
13 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
14 2775507255 Sphingobium indicum B90A Isolate Rhizosphere
15 2818991466 Sphingomonas trueperi 1152a Isolate Unclassified
16 2852653556 Sphingopyxis sp. JAI108 Isolate Rhizosphere
17 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
18 2928027323 Sphingomonas sp. 1185 Isolate Unclassified
19 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
20 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
21 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
22 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
23 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
24 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
25 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
26 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
27 3300002076 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3 Metagenome Rhizosphere
28 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
29 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
30 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
31 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
32 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
33 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
34 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
35 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
36 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
37 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
38 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
39 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
40 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
41 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
42 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
43 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
44 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
45 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
46 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
47 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
48 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
49 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
50 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
51 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
52 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
53 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
54 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
55 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
56 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
57 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
58 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
59 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
60 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
61 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
62 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
63 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
64 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
65 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
66 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
67 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
68 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
69 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
70 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
71 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
72 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
73 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
74 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
75 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
76 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
77 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
78 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
79 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
80 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
81 3300025231 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
82 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
83 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
84 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
85 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
86 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
87 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
88 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
89 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
90 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
91 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
92 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
119 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
120 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
121 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
122 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
123 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
124 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
125 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
126 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
127 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
128 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
129 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
130 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
131 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
132 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
133 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
134 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
135 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
136 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
137 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
138 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
139 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
140 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
141 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
142 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
143 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
144 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
145 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
146 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
147 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
148 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
149 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
150 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
151 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
152 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
153 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
154 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
155 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
156 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
157 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
158 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
159 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
160 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
161 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
162 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
163 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
164 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
165 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
166 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
167 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
168 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
169 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
170 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
171 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
172 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
173 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
174 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
175 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
176 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
177 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
178 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
179 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
180 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
181 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
182 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
183 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
184 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
185 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
186 3300049663 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_A_2_drought Metagenome Rhizosphere
187 3300049664 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_A_2_drought Metagenome Rhizosphere
188 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
189 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
190 3300049690 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G13_A_4_drought Metagenome Rhizosphere
191 3300049707 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B5_B_2_drought Metagenome Rhizosphere
192 3300049777 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G24_A_5_control Metagenome Rhizosphere
193 3300049778 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_A_5_control Metagenome Rhizosphere
194 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
195 3300049853 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought Metagenome Rhizosphere
196 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
197 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
198 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
199 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
200 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
201 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
202 3300053158 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 endosphere Metagenome Endosphere
203 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
204 642555113 Paraburkholderia phytofirmans PsJN Isolate Unclassified
205 8018845410 Burkholderia reimsis BE51 Isolate Rhizosphere
206 8020945358 Burkholderia sp. BE17 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.86
Metatranscriptomes 0
Isolates 7.14

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.31
Nodule 0.6
Rhizoplane 2.68
Rhizosphere 75.6
Stem 0
Stem Tuber 0
Unclassified 9.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2508598 2162886007 Bacteria 1888
2 SwRhRL2b_contig_3160136 2162886007 Bacteria 3022
3 JGI24740J21852_10003265 3300001979 Bacteria 7155
4 JGI24739J22299_10001202 3300001989 Bacteria 9686
5 JGI24739J22299_10039245 3300001989 Bacteria 1587
6 JGI24737J22298_10017138 3300001990 Bacteria 2335
7 JGI24735J21928_10007595 3300002067 Bacteria 3533
8 JGI24738J21930_10000043 3300002075 Bacteria 24825
9 JGI24738J21930_10003045 3300002075 Bacteria 4285
10 JGI24749J21850_1000053 3300002076 Bacteria 22163
11 JGI25150J39212_1000098 3300002774 Bacteria 50282
12 JGI25165J46597_1000181 3300003214 Bacteria 95569
13 JGI25153J46596_10000055 3300003215 Bacteria 135518
14 JGI25153J46596_10000172 3300003215 Bacteria 64551
15 Ga0055536_1001217 3300003781 Bacteria 15966
16 Ga0055530_10000035 3300003791 Bacteria 117598
17 Ga0055530_10002834 3300003791 Bacteria 10613
18 Ga0055531_10000431 3300003794 Bacteria 39766
19 Ga0065704_10002483 3300005289 Bacteria 9950
20 Ga0065704_10071395 3300005289 Bacteria 11338
21 Ga0070658_10000081 3300005327 Bacteria 90275
22 Ga0070658_10042452 3300005327 Bacteria 3673
23 Ga0070666_10004429 3300005335 Bacteria 8556
24 Ga0070680_100049620 3300005336 Bacteria 3422
25 Ga0070680_100060851 3300005336 Bacteria 3090
26 Ga0068868_100079727 3300005338 Bacteria 2623
27 Ga0070660_100000044 3300005339 Bacteria 71756
28 Ga0070660_100046821 3300005339 Bacteria 3316
29 Ga0070691_10002835 3300005341 Bacteria 7751
30 Ga0070668_100000228 3300005347 Bacteria 36392
31 Ga0070668_100000428 3300005347 Bacteria 27729
32 Ga0070668_100142202 3300005347 Bacteria 1934
33 Ga0070669_100000459 3300005353 Bacteria 30941
34 Ga0070669_100016216 3300005353 Bacteria 5313
35 Ga0070659_100000027 3300005366 Bacteria 143469
36 Ga0070667_100000686 3300005367 Bacteria 32694
37 Ga0070667_100000754 3300005367 Bacteria 30851
38 Ga0070667_100001788 3300005367 Bacteria 19134
39 Ga0070667_100011172 3300005367 Bacteria 7428
40 Ga0070713_100075267 3300005436 Unclassified 2863
41 Ga0070662_100077787 3300005457 Bacteria 2462
42 Ga0070662_100102750 3300005457 Bacteria 2166
43 Ga0070681_10007480 3300005458 Bacteria 10674
44 Ga0070679_100096908 3300005530 Bacteria 2937
45 Ga0070684_100175869 3300005535 Unclassified 1945
46 Ga0068853_100000140 3300005539 Bacteria 49375
47 Ga0068853_100000281 3300005539 Bacteria 35996
48 Ga0068853_100125072 3300005539 Bacteria 2296
49 Ga0070665_100001398 3300005548 Bacteria 28355
50 Ga0070665_100119001 3300005548 Bacteria 2644
51 Ga0068855_100000313 3300005563 Bacteria 60285
52 Ga0068855_100039197 3300005563 Bacteria 5625
53 Ga0068855_100346772 3300005563 Bacteria 1636
54 Ga0068854_100000524 3300005578 Bacteria 23255
55 Ga0068856_100132649 3300005614 Unclassified 2496
56 Ga0068852_100000112 3300005616 Bacteria 54817
57 Ga0068852_100111301 3300005616 Bacteria 2490
58 Ga0068859_100064948 3300005617 Bacteria 3683
59 Ga0068859_100288220 3300005617 Bacteria 1735
60 Ga0068864_100012984 3300005618 Bacteria 6894
61 Ga0068863_100000413 3300005841 Bacteria 43520
62 Ga0068863_100084599 3300005841 Bacteria 3006
63 Ga0068858_100000364 3300005842 Bacteria 47634
64 Ga0068860_100000424 3300005843 Bacteria 54103
65 Ga0068860_100000999 3300005843 Bacteria 31328
66 Ga0068860_100031773 3300005843 Bacteria 5076
67 Ga0068860_100076843 3300005843 Bacteria 3175
68 Ga0068860_100086891 3300005843 Bacteria 2976
69 Ga0068862_100106118 3300005844 Bacteria 2462
70 Ga0068862_100241811 3300005844 Bacteria 1641
71 Ga0075370_10000028 3300006353 Bacteria 50628
72 Ga0097620_100064948 3300006931 Bacteria 3683
73 Ga0097620_100288242 3300006931 Bacteria 1735
74 Ga0105250_10074753 3300009092 Bacteria 1371
75 Ga0105240_10000156 3300009093 Bacteria 139950
76 Ga0105240_10004294 3300009093 Bacteria 21769
77 Ga0105240_10416807 3300009093 Bacteria 1510
78 Ga0105245_10007786 3300009098 Bacteria 9388
79 Ga0105247_10031148 3300009101 Bacteria 3236
80 Ga0105247_10046684 3300009101 Bacteria 2659
81 Ga0105241_10127654 3300009174 Bacteria 2055
82 Ga0105248_10015198 3300009177 Bacteria 8484
83 Ga0105248_10024513 3300009177 Bacteria 6707
84 Ga0105248_10044174 3300009177 Bacteria 4998
85 Ga0105248_10128085 3300009177 Bacteria 2864
86 Ga0105237_10000325 3300009545 Bacteria 67280
87 Ga0105237_10071717 3300009545 Bacteria 3458
88 Ga0105238_10285192 3300009551 Bacteria 1633
89 Ga0105249_10004686 3300009553 Bacteria 11814
90 Ga0105249_10013177 3300009553 Bacteria 7295
91 Ga0105249_10049568 3300009553 Bacteria 3829
92 Ga0105239_10000118 3300010375 Bacteria 112168
93 Ga0105239_10207632 3300010375 Bacteria 2195
94 Ga0157373_10077614 3300013100 Bacteria 2343
95 Ga0157371_10001355 3300013102 Bacteria 25761
96 Ga0157371_10080092 3300013102 Bacteria 2313
97 Ga0157370_10006996 3300013104 Bacteria 12317
98 Ga0157370_10009682 3300013104 Bacteria 10249
99 Ga0157370_10251238 3300013104 Bacteria 1636
100 Ga0157369_10000782 3300013105 Bacteria 41020
101 Ga0157369_10001623 3300013105 Bacteria 27487
102 Ga0157369_10008099 3300013105 Bacteria 12046
103 Ga0157369_10021165 3300013105 Bacteria 7271
104 Ga0157369_10041371 3300013105 Bacteria 5030
105 Ga0157369_10056392 3300013105 Bacteria 4240
106 Ga0157372_10000832 3300013307 Bacteria 33445
107 Ga0157372_10389594 3300013307 Bacteria 1624
108 Ga0157372_10398648 3300013307 Bacteria 1604
109 Ga0163163_10063300 3300014325 Bacteria 3667
110 Ga0163161_10145736 3300017792 Bacteria 1796
111 Ga0207427_104455 3300025231 Bacteria 2352
112 Ga0207425_1000005 3300025245 Bacteria 900502
113 Ga0209129_1000423 3300025258 Bacteria 32153
114 Ga0209233_1000045 3300025261 Bacteria 473379
115 Ga0209676_1000085 3300025292 Bacteria 273425
116 Ga0209676_1001055 3300025292 Bacteria 31590
117 Ga0209676_1008928 3300025292 Bacteria 4400
118 Ga0209025_1000873 3300025294 Bacteria 47373
119 Ga0209758_1000002 3300025297 Bacteria 1400310
120 Ga0209758_1000007 3300025297 Bacteria 1270410
121 Ga0209758_1020195 3300025297 Bacteria 3166
122 Ga0209050_1000042 3300025298 Bacteria 402842
123 Ga0209050_1000801 3300025298 Bacteria 44325
124 Ga0209050_1002605 3300025298 Bacteria 14941
125 Ga0207426_1021722 3300025302 Bacteria 2215
126 Ga0209051_1029839 3300025303 Bacteria 2127
127 Ga0209257_1000558 3300025304 Bacteria 63862
128 Ga0209257_1002880 3300025304 Bacteria 15992
129 Ga0207713_1017868 3300025735 Bacteria 3532
130 Ga0207713_1038824 3300025735 Bacteria 2016
131 Ga0207647_10001261 3300025904 Bacteria 19474
132 Ga0207647_10042258 3300025904 Bacteria 2860
133 Ga0207647_10078104 3300025904 Bacteria 1989
134 Ga0207645_10034320 3300025907 Bacteria 3260
135 Ga0207705_10000193 3300025909 Bacteria 61961
136 Ga0207707_10005336 3300025912 Bacteria 11234
137 Ga0207695_10000250 3300025913 Bacteria 139984
138 Ga0207695_10002981 3300025913 Bacteria 24373
139 Ga0207695_10034745 3300025913 Bacteria 5477
140 Ga0207695_10295919 3300025913 Bacteria 1510
141 Ga0207671_10000100 3300025914 Bacteria 131821
142 Ga0207671_10045092 3300025914 Bacteria 3260
143 Ga0207660_10000171 3300025917 Bacteria 41117
144 Ga0207660_10085147 3300025917 Bacteria 2331
145 Ga0207660_10129289 3300025917 Bacteria 1921
146 Ga0207657_10001156 3300025919 Bacteria 28092
147 Ga0207652_10076390 3300025921 Bacteria 2921
148 Ga0207681_10000676 3300025923 Bacteria 22402
149 Ga0207681_10003027 3300025923 Bacteria 10562
150 Ga0207681_10006274 3300025923 Bacteria 7298
151 Ga0207694_10005798 3300025924 Bacteria 9462
152 Ga0207694_10211043 3300025924 Bacteria 1581
153 Ga0207687_10109545 3300025927 Bacteria 2046
154 Ga0207700_10021135 3300025928 Bacteria 4437
155 Ga0207690_10000067 3300025932 Bacteria 91404
156 Ga0207706_10013435 3300025933 Bacteria 7441
157 Ga0207706_10198006 3300025933 Bacteria 1762
158 Ga0207711_10000676 3300025941 Bacteria 33882
159 Ga0207711_10010093 3300025941 Bacteria 7848
160 Ga0207667_10000006 3300025949 Bacteria 679876
161 Ga0207667_10000091 3300025949 Bacteria 148651
162 Ga0207667_10075847 3300025949 Bacteria 3490
163 Ga0207667_10111876 3300025949 Bacteria 2816
164 Ga0207712_10010759 3300025961 Bacteria 5815
165 Ga0207668_10000167 3300025972 Bacteria 45608
166 Ga0207668_10002089 3300025972 Bacteria 11655
167 Ga0207640_10000906 3300025981 Bacteria 16636
168 Ga0207658_10000587 3300025986 Bacteria 32623
169 Ga0207658_10000820 3300025986 Bacteria 25974
170 Ga0207658_10000849 3300025986 Bacteria 25528
171 Ga0207658_10001370 3300025986 Bacteria 19027
172 Ga0207677_10082572 3300026023 Bacteria 2310
173 Ga0207703_10000383 3300026035 Bacteria 47353
174 Ga0207639_10000038 3300026041 Bacteria 145316
175 Ga0207639_10000267 3300026041 Bacteria 37378
176 Ga0207702_10020439 3300026078 Bacteria 5484
177 Ga0207702_10100678 3300026078 Unclassified 2550
178 Ga0207641_10000050 3300026088 Bacteria 175954
179 Ga0207641_10090603 3300026088 Bacteria 2674
180 Ga0207698_10000081 3300026142 Bacteria 63461
181 Ga0207698_10001707 3300026142 Bacteria 12800
182 Ga0207698_10063641 3300026142 Unclassified 2888
183 Ga0268266_10173492 3300028379 Bacteria 1958
184 Ga0268265_10059288 3300028380 Bacteria 2927
185 Ga0268264_10000345 3300028381 Bacteria 71600
186 Ga0268264_10000471 3300028381 Bacteria 54745
187 Ga0268264_10020618 3300028381 Bacteria 5385
188 Ga0268264_10155174 3300028381 Bacteria 2057
189 Ga0307515_10000093 3300028794 Bacteria 212053
190 Ga0265338_10008938 3300028800 Bacteria 12049
191 Ga0307408_100006942 3300031548 Bacteria 7495
192 Ga0307408_100039803 3300031548 Bacteria 3325
193 Ga0307405_10006457 3300031731 Bacteria 5769
194 Ga0307405_10043774 3300031731 Bacteria 2734
195 Ga0307407_10150897 3300031903 Bacteria 1510
196 Ga0307412_10001280 3300031911 Bacteria 14081
197 Ga0307412_10018319 3300031911 Bacteria 4211
198 Ga0307412_10103766 3300031911 Bacteria 2016
199 Ga0307409_100287092 3300031995 Bacteria 1524
200 Ga0307416_100104709 3300032002 Bacteria 2474
201 Ga0307414_10001336 3300032004 Bacteria 12755
202 Ga0307414_10005919 3300032004 Bacteria 6771
203 Ga0395899_0000530 3300037312 Bacteria 41828
204 Ga0395899_0007460 3300037312 Bacteria 8451
205 Ga0395900_0014218 3300037418 Bacteria 8124
206 Ga0395900_0170035 3300037418 Bacteria 2219
207 Ga0395900_0227558 3300037418 Bacteria 1877
208 Ga0395898_0000315 3300037466 Bacteria 111811
209 Ga0395898_0030194 3300037466 Bacteria 5425
210 Ga0395898_0206598 3300037466 Bacteria 1874
211 Ga0395898_0471057 3300037466 Bacteria 1195
212 Ga0395905_0000005 3300037471 Bacteria 557808
213 Ga0395905_0008881 3300037471 Bacteria 9872
214 Ga0395905_0120734 3300037471 Bacteria 2463
215 Ga0395905_0180916 3300037471 Bacteria 1979
216 Ga0395905_0233122 3300037471 Bacteria 1721
217 Ga0395905_0254443 3300037471 Bacteria 1640
218 Ga0395901_0000242 3300038443 Bacteria 68210
219 Ga0395901_0005112 3300038443 Bacteria 13251
220 Ga0395901_0014885 3300038443 Bacteria 7903
221 Ga0395901_0219592 3300038443 Bacteria 1987
222 Ga0395901_0615779 3300038443 Bacteria 1093
223 Ga0436365_0694988 3300039437 Bacteria 10622
224 Ga0439439_0003745 3300041406 Bacteria 3374
225 Ga0439461_0001699 3300041410 Bacteria 3432
226 Ga0439465_0002955 3300041413 Bacteria 5561
227 Ga0439431_0003370 3300041997 Bacteria 3515
228 Ga0439445_0000066 3300042004 Bacteria 15924
229 Ga0439445_0002506 3300042004 Bacteria 4086
230 Ga0453683_0014708 3300044673 Bacteria 5079
231 Ga0466965_0030232 3300044683 Bacteria 2638
232 Ga0466961_0000117 3300044693 Bacteria 53089
233 Ga0466970_0115823 3300044765 Bacteria 1466
234 Ga0466959_0223337 3300045049 Unclassified 1306
235 Ga0495603_0065232 3300046455 Bacteria 2146
236 Ga0495653_0123968 3300046463 Bacteria 1837
237 Ga0495650_0001776 3300046471 Bacteria 19584
238 Ga0495580_0002002 3300046472 Bacteria 17935
239 Ga0495580_0017251 3300046472 Bacteria 5405
240 Ga0495585_0001077 3300046492 Bacteria 22514
241 Ga0495596_0000171 3300046500 Bacteria 45024
242 Ga0495606_0002696 3300046507 Bacteria 20059
243 Ga0495606_0106938 3300046507 Bacteria 1693
244 Ga0495610_0000165 3300046512 Bacteria 73467
245 Ga0495610_0000170 3300046512 Bacteria 72711
246 Ga0495610_0000496 3300046512 Bacteria 40189
247 Ga0495620_0002683 3300046515 Bacteria 10270
248 Ga0495620_0003501 3300046515 Bacteria 8981
249 Ga0495628_0036645 3300046516 Bacteria 3935
250 Ga0495632_0001359 3300046519 Bacteria 20574
251 Ga0495643_0000215 3300046522 Bacteria 88969
252 Ga0495643_0070473 3300046522 Bacteria 1836
253 Ga0495648_0000088 3300046524 Bacteria 115109
254 Ga0495648_0071164 3300046524 Bacteria 2017
255 Ga0495652_0013336 3300046529 Bacteria 7395
256 Ga0495634_0029807 3300046642 Bacteria 3775
257 Ga0495625_0020685 3300046660 Bacteria 5073
258 Ga0495671_0009906 3300046692 Bacteria 5304
259 Ga0495600_0222792 3300046809 Bacteria 1206
260 Ga0495604_0101053 3300047317 Bacteria 2119
261 Ga0495680_0076749 3300047322 Bacteria 2532
262 Ga0495681_0000104 3300047470 Bacteria 74261
263 Ga0495681_0000209 3300047470 Bacteria 48667
264 Ga0495602_0021872 3300048088 Bacteria 6278
265 Ga0496100_0051926 3300048903 Bacteria 2663
266 Ga0496102_0000377 3300048905 Bacteria 53437
267 Ga0496103_0000128 3300048906 Bacteria 81657
268 Ga0496107_0100139 3300048910 Bacteria 2124
269 Ga0496110_0271107 3300048913 Unclassified 1545
270 Ga0496113_0017250 3300048916 Bacteria 5007
271 Ga0496114_0231007 3300048917 Unclassified 1625
272 Ga0496117_0003410 3300048920 Bacteria 18497
273 Ga0496118_0017222 3300048921 Bacteria 6587
274 Ga0496119_0002895 3300048922 Bacteria 18314
275 Ga0496120_0003995 3300048923 Bacteria 12820
276 Ga0496121_0000024 3300048924 Bacteria 462959
277 Ga0496121_0000065 3300048924 Bacteria 269310
278 Ga0496123_0001729 3300048926 Bacteria 28965
279 Ga0496123_0037559 3300048926 Bacteria 3418
280 Ga0496123_0138889 3300048926 Bacteria 1332
281 Ga0496124_0002003 3300048927 Bacteria 27742
282 Ga0496124_0002122 3300048927 Bacteria 26680
283 Ga0496124_0011208 3300048927 Bacteria 8986
284 Ga0496124_0095939 3300048927 Bacteria 2410
285 Ga0496124_0162775 3300048927 Bacteria 1737
286 Ga0496125_0014732 3300048928 Bacteria 7596
287 Ga0496125_0048382 3300048928 Bacteria 3547
288 Ga0496125_0055759 3300048928 Bacteria 3216
289 Ga0496126_0000493 3300048929 Bacteria 77742
290 Ga0501223_000018 3300049663 Bacteria 67853
291 Ga0501224_000002 3300049664 Bacteria 229331
292 Ga0501233_000006 3300049668 Bacteria 39891
293 Ga0501233_004216 3300049668 Bacteria 2623
294 Ga0501259_001125 3300049688 Bacteria 4459
295 Ga0501261_000033 3300049690 Bacteria 30506
296 Ga0501234_000123 3300049707 Bacteria 10106
297 Ga0501234_000167 3300049707 Bacteria 9005
298 Ga0501281_00253 3300049777 Bacteria 5725
299 Ga0501282_001205 3300049778 Bacteria 2899
300 Ga0501044_0001276 3300049823 Bacteria 29754
301 Ga0501226_000026 3300049853 Bacteria 91031
302 nmdc:mga07m45_3_c1 3300050496 Bacteria 421414
303 Ga0500643_000001 3300053087 Bacteria 1440111
304 Ga0500643_002783 3300053087 Bacteria 8747
305 Ga0500594_0002376 3300053118 Bacteria 4092
306 Ga0500655_000007 3300053133 Bacteria 72027
307 Ga0500655_000008 3300053133 Bacteria 67575
308 Ga0500568_0001526 3300053139 Bacteria 14737
309 Ga0500616_0001532 3300053153 Bacteria 21748
310 Ga0500616_0004042 3300053153 Bacteria 10669
311 Ga0500627_0000165 3300053158 Bacteria 19563
312 Ga0500645_013208 3300053730 Bacteria 2656

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037466 Ga0395898_0471057 Ga0395898_0471057_204_1139 310
2 3300037471 Ga0395905_0008881 Ga0395905_0008881_124_1059 310
3 3300038443 Ga0395901_0615779 Ga0395901_0615779_107_1063 317
4 3300044765 Ga0466970_0115823 Ga0466970_0115823_350_1375 321
5 3300046809 Ga0495600_0222792 Ga0495600_0222792_45_1070 321
6 3300045049 Ga0466959_0223337 Ga0466959_0223337_273_1280 335
7 3300046472 Ga0495580_0017251 Ga0495580_0017251_1690_2823 357
8 3300053087 Ga0500643_002783 Ga0500643_002783_3270_4343 357
9 3300046507 Ga0495606_0106938 Ga0495606_0106938_254_1345 363
10 iso_pu_bacteria 2599185239 2599742208 363
11 3300048927 Ga0496124_0162775 Ga0496124_0162775_213_1310 365
12 3300002076 JGI24749J21850_1000053 JGI24749J21850_100005310 367
13 3300005617 Ga0068859_100064948 Ga0068859_1000649483 367
14 3300006931 Ga0097620_100064948 Ga0097620_1000649483 367
15 3300009177 Ga0105248_10024513 Ga0105248_100245134 367
16 3300025941 Ga0207711_10010093 Ga0207711_100100935 367
17 3300041406 Ga0439439_0003745 Ga0439439_0003745_1639_2784 372
18 iso_pu_bacteria 2738541281 2738743217 376
19 iso_pu_bacteria 2738543032 2739352834 376
20 iso_pu_bacteria 2928115317 2928115877 376
21 3300013307 Ga0157372_10398648 Ga0157372_103986482 377
22 3300025302 Ga0207426_1021722 Ga0207426_10217221 377
23 iso_pu_bacteria 2775507255 2778126695 377
24 iso_pu_bacteria 2852653556 2852656786 378
25 3300005327 Ga0070658_10042452 Ga0070658_100424521 379
26 3300005336 Ga0070680_100060851 Ga0070680_1000608511 379
27 3300005339 Ga0070660_100046821 Ga0070660_1000468214 379
28 3300005341 Ga0070691_10002835 Ga0070691_1000283511 379
29 3300005458 Ga0070681_10007480 Ga0070681_1000748014 379
30 3300005530 Ga0070679_100096908 Ga0070679_1000969081 379
31 3300013100 Ga0157373_10077614 Ga0157373_100776143 379
32 3300013104 Ga0157370_10006996 Ga0157370_1000699613 379
33 3300025912 Ga0207707_10005336 Ga0207707_1000533614 379
34 3300025917 Ga0207660_10000171 Ga0207660_1000017128 379
35 3300025917 Ga0207660_10129289 Ga0207660_101292892 379
36 3300025921 Ga0207652_10076390 Ga0207652_100763902 379
37 3300001989 JGI24739J22299_10001202 JGI24739J22299_100012022 380
38 3300009093 Ga0105240_10416807 Ga0105240_104168072 380
39 3300013102 Ga0157371_10080092 Ga0157371_100800922 380
40 3300025913 Ga0207695_10295919 Ga0207695_102959192 380
41 3300025933 Ga0207706_10013435 Ga0207706_100134352 380
42 3300028794 Ga0307515_10000093 Ga0307515_10000093160 380
43 3300031911 Ga0307412_10001280 Ga0307412_100012807 380
44 3300032004 Ga0307414_10001336 Ga0307414_100013363 380
45 3300049668 Ga0501233_004216 Ga0501233_004216_1254_2525 380
46 3300049707 Ga0501234_000123 Ga0501234_000123_2379_3659 380
47 iso_pu_bacteria 2599185359 2600227220 380
48 iso_pu_bacteria 2818991466 2819715298 380
49 3300001990 JGI24737J22298_10017138 JGI24737J22298_100171382 381
50 3300002075 JGI24738J21930_10000043 JGI24738J21930_1000004319 381
51 3300005335 Ga0070666_10004429 Ga0070666_100044294 381
52 3300005347 Ga0070668_100000228 Ga0070668_10000022840 381
53 3300005353 Ga0070669_100016216 Ga0070669_1000162163 381
54 3300005367 Ga0070667_100000754 Ga0070667_1000007544 381
55 3300005367 Ga0070667_100001788 Ga0070667_10000178813 381
56 3300005457 Ga0070662_100077787 Ga0070662_1000777871 381
57 3300005539 Ga0068853_100000281 Ga0068853_1000002812 381
58 3300005548 Ga0070665_100119001 Ga0070665_1001190013 381
59 3300005841 Ga0068863_100000413 Ga0068863_1000004134 381
60 3300005842 Ga0068858_100000364 Ga0068858_10000036414 381
61 3300005843 Ga0068860_100031773 Ga0068860_1000317732 381
62 3300005843 Ga0068860_100076843 Ga0068860_1000768434 381
63 3300009093 Ga0105240_10000156 Ga0105240_1000015663 381
64 3300009545 Ga0105237_10000325 Ga0105237_1000032538 381
65 3300009551 Ga0105238_10285192 Ga0105238_102851922 381
66 3300010375 Ga0105239_10000118 Ga0105239_1000011883 381
67 3300013102 Ga0157371_10001355 Ga0157371_1000135521 381
68 3300013105 Ga0157369_10021165 Ga0157369_100211652 381
69 3300013307 Ga0157372_10000832 Ga0157372_1000083217 381
70 3300017792 Ga0163161_10145736 Ga0163161_101457362 381
71 3300025904 Ga0207647_10042258 Ga0207647_100422581 381
72 3300025923 Ga0207681_10003027 Ga0207681_100030276 381
73 3300025923 Ga0207681_10006274 Ga0207681_100062749 381
74 3300025924 Ga0207694_10005798 Ga0207694_1000579814 381
75 3300025933 Ga0207706_10198006 Ga0207706_101980062 381
76 3300025972 Ga0207668_10002089 Ga0207668_100020896 381
77 3300025986 Ga0207658_10000587 Ga0207658_1000058733 381
78 3300025986 Ga0207658_10000849 Ga0207658_1000084921 381
79 3300026035 Ga0207703_10000383 Ga0207703_1000038336 381
80 3300026041 Ga0207639_10000267 Ga0207639_100002672 381
81 3300026088 Ga0207641_10000050 Ga0207641_10000050174 381
82 3300028379 Ga0268266_10173492 Ga0268266_101734923 381
83 3300028381 Ga0268264_10020618 Ga0268264_100206185 381
84 3300048924 Ga0496121_0000065 Ga0496121_0000065_241757_242902 381
85 3300048928 Ga0496125_0055759 Ga0496125_0055759_502_1647 381
86 3300053133 Ga0500655_000007 Ga0500655_000007_32123_33268 381
87 2162886007 SwRhRL2b_contig_3160136 SwRhRL2b_0009.00010070 382
88 3300005289 Ga0065704_10002483 Ga0065704_100024838 382
89 3300005844 Ga0068862_100241811 Ga0068862_1002418112 382
90 3300031995 Ga0307409_100287092 Ga0307409_1002870922 382
91 3300032002 Ga0307416_100104709 Ga0307416_1001047092 382
92 3300037418 Ga0395900_0014218 Ga0395900_0014218_230_1381 382
93 3300038443 Ga0395901_0014885 Ga0395901_0014885_253_1404 382
94 3300046512 Ga0495610_0000496 Ga0495610_0000496_29737_30903 382
95 3300047470 Ga0495681_0000104 Ga0495681_0000104_308_1456 382
96 3300048928 Ga0496125_0014732 Ga0496125_0014732_6205_7353 382
97 3300048928 Ga0496125_0048382 Ga0496125_0048382_986_2173 382
98 3300053730 Ga0500645_013208 Ga0500645_013208_756_1904 382
99 3300003781 Ga0055536_1001217 Ga0055536_100121715 383
100 3300003791 Ga0055530_10000035 Ga0055530_10000035123 383
101 3300005367 Ga0070667_100000686 Ga0070667_10000068634 383
102 3300005841 Ga0068863_100084599 Ga0068863_1000845992 383
103 3300005843 Ga0068860_100000999 Ga0068860_1000009994 383
104 3300005844 Ga0068862_100106118 Ga0068862_1001061182 383
105 3300013105 Ga0157369_10001623 Ga0157369_100016232 383
106 3300025292 Ga0209676_1000085 Ga0209676_100008547 383
107 3300025292 Ga0209676_1001055 Ga0209676_100105510 383
108 3300025298 Ga0209050_1000042 Ga0209050_1000042204 383
109 3300025304 Ga0209257_1002880 Ga0209257_10028802 383
110 3300025986 Ga0207658_10000820 Ga0207658_100008204 383
111 3300026088 Ga0207641_10090603 Ga0207641_100906033 383
112 3300028381 Ga0268264_10000345 Ga0268264_1000034524 383
113 3300028800 Ga0265338_10008938 Ga0265338_100089385 383
114 3300037312 Ga0395899_0007460 Ga0395899_0007460_278_1429 383
115 3300037471 Ga0395905_0120734 Ga0395905_0120734_1045_2196 383
116 3300038443 Ga0395901_0005112 Ga0395901_0005112_256_1407 383
117 3300005436 Ga0070713_100075267 Ga0070713_1000752672 384
118 3300009545 Ga0105237_10071717 Ga0105237_100717172 384
119 3300025914 Ga0207671_10045092 Ga0207671_100450922 384
120 3300025928 Ga0207700_10021135 Ga0207700_100211354 384
121 3300046471 Ga0495650_0001776 Ga0495650_0001776_15395_16549 384
122 3300046500 Ga0495596_0000171 Ga0495596_0000171_43744_44898 384
123 3300046512 Ga0495610_0000165 Ga0495610_0000165_2071_3243 384
124 3300046515 Ga0495620_0002683 Ga0495620_0002683_7589_8743 384
125 3300046515 Ga0495620_0003501 Ga0495620_0003501_5767_6939 384
126 3300046519 Ga0495632_0001359 Ga0495632_0001359_11384_12538 384
127 3300047470 Ga0495681_0000209 Ga0495681_0000209_5882_7036 384
128 3300048927 Ga0496124_0002122 Ga0496124_0002122_233_1387 384
129 3300053153 Ga0500616_0004042 Ga0500616_0004042_2339_3589 384
130 3300005578 Ga0068854_100000524 Ga0068854_1000005246 385
131 3300005618 Ga0068864_100012984 Ga0068864_1000129847 385
132 3300013105 Ga0157369_10000782 Ga0157369_1000078244 385
133 3300013105 Ga0157369_10008099 Ga0157369_1000809910 385
134 3300013307 Ga0157372_10389594 Ga0157372_103895942 385
135 3300014325 Ga0163163_10063300 Ga0163163_100633003 385
136 3300025913 Ga0207695_10034745 Ga0207695_100347454 385
137 3300025981 Ga0207640_10000906 Ga0207640_1000090615 385
138 3300026078 Ga0207702_10020439 Ga0207702_100204392 385
139 3300037471 Ga0395905_0254443 Ga0395905_0254443_80_1348 385
140 3300053087 Ga0500643_000001 Ga0500643_000001_378127_379344 385
141 3300053139 Ga0500568_0001526 Ga0500568_0001526_7223_8380 385
142 3300053153 Ga0500616_0001532 Ga0500616_0001532_6300_7457 385
143 3300001979 JGI24740J21852_10003265 JGI24740J21852_100032651 386
144 3300001989 JGI24739J22299_10039245 JGI24739J22299_100392451 386
145 3300002067 JGI24735J21928_10007595 JGI24735J21928_100075952 386
146 3300005347 Ga0070668_100000428 Ga0070668_10000042832 386
147 3300005457 Ga0070662_100102750 Ga0070662_1001027502 386
148 3300009092 Ga0105250_10074753 Ga0105250_100747531 386
149 3300009553 Ga0105249_10004686 Ga0105249_100046867 386
150 3300013104 Ga0157370_10251238 Ga0157370_102512382 386
151 3300025961 Ga0207712_10010759 Ga0207712_100107595 386
152 3300025972 Ga0207668_10000167 Ga0207668_1000016742 386
153 3300037418 Ga0395900_0170035 Ga0395900_0170035_865_2025 386
154 3300039437 Ga0436365_0694988 Ga0436365_0694988_6167_7333 386
155 3300005843 Ga0068860_100000424 Ga0068860_1000004244 387
156 3300009101 Ga0105247_10031148 Ga0105247_100311483 387
157 3300028381 Ga0268264_10000471 Ga0268264_1000047143 387
158 3300041413 Ga0439465_0002955 Ga0439465_0002955_3132_4295 387
159 3300042004 Ga0439445_0000066 Ga0439445_0000066_2662_3825 387
160 3300048927 Ga0496124_0002003 Ga0496124_0002003_1950_3113 387
161 iso_pu_bacteria 2515154122 2515685773 387
162 iso_pu_bacteria 642555113 642617581 387
163 3300005336 Ga0070680_100049620 Ga0070680_1000496201 388
164 3300005338 Ga0068868_100079727 Ga0068868_1000797272 388
165 3300005535 Ga0070684_100175869 Ga0070684_1001758691 388
166 3300005563 Ga0068855_100039197 Ga0068855_1000391978 388
167 3300005614 Ga0068856_100132649 Ga0068856_1001326492 388
168 3300006353 Ga0075370_10000028 Ga0075370_100000283 388
169 3300013105 Ga0157369_10056392 Ga0157369_100563926 388
170 3300025904 Ga0207647_10001261 Ga0207647_100012618 388
171 3300025907 Ga0207645_10034320 Ga0207645_100343204 388
172 3300025917 Ga0207660_10085147 Ga0207660_100851473 388
173 3300025949 Ga0207667_10075847 Ga0207667_100758474 388
174 3300026023 Ga0207677_10082572 Ga0207677_100825722 388
175 3300026078 Ga0207702_10100678 Ga0207702_101006784 388
176 3300026142 Ga0207698_10063641 Ga0207698_100636413 388
177 3300037471 Ga0395905_0233122 Ga0395905_0233122_241_1407 388
178 3300046512 Ga0495610_0000170 Ga0495610_0000170_33284_34450 388
179 3300050496 nmdc:mga07m45_3_c1 nmdc:mga07m45_3_c1_315782_316957 388
180 iso_pu_bacteria 2928027323 2928029519 388
181 3300037471 Ga0395905_0180916 Ga0395905_0180916_793_1965 389
182 3300046492 Ga0495585_0001077 Ga0495585_0001077_51_1229 389
183 3300046507 Ga0495606_0002696 Ga0495606_0002696_6642_7838 389
184 3300005563 Ga0068855_100346772 Ga0068855_1003467722 390
185 3300013104 Ga0157370_10009682 Ga0157370_1000968215 390
186 3300013105 Ga0157369_10041371 Ga0157369_1004137110 390
187 3300025949 Ga0207667_10111876 Ga0207667_101118763 390
188 3300031548 Ga0307408_100039803 Ga0307408_1000398031 390
189 3300031731 Ga0307405_10006457 Ga0307405_100064572 390
190 3300031911 Ga0307412_10018319 Ga0307412_100183194 390
191 3300037312 Ga0395899_0000530 Ga0395899_0000530_4060_5247 390
192 3300037466 Ga0395898_0000315 Ga0395898_0000315_53583_54770 390
193 3300037466 Ga0395898_0206598 Ga0395898_0206598_652_1827 390
194 3300037471 Ga0395905_0000005 Ga0395905_0000005_414357_415544 390
195 3300038443 Ga0395901_0000242 Ga0395901_0000242_51574_52761 390
196 3300038443 Ga0395901_0219592 Ga0395901_0219592_566_1753 390
197 3300044673 Ga0453683_0014708 Ga0453683_0014708_93_1322 390
198 3300046522 Ga0495643_0000215 Ga0495643_0000215_32651_33823 390
199 3300048910 Ga0496107_0100139 Ga0496107_0100139_129_1364 390
200 3300048913 Ga0496110_0271107 Ga0496110_0271107_226_1461 390
201 3300048917 Ga0496114_0231007 Ga0496114_0231007_191_1426 390
202 3300003214 JGI25165J46597_1000181 JGI25165J46597_100018170 391
203 3300005339 Ga0070660_100000044 Ga0070660_10000004439 391
204 3300005366 Ga0070659_100000027 Ga0070659_10000002758 391
205 3300009093 Ga0105240_10004294 Ga0105240_1000429421 391
206 3300009098 Ga0105245_10007786 Ga0105245_100077865 391
207 3300009177 Ga0105248_10128085 Ga0105248_101280854 391
208 3300025231 Ga0207427_104455 Ga0207427_1044552 391
209 3300025261 Ga0209233_1000045 Ga0209233_100004569 391
210 3300025913 Ga0207695_10002981 Ga0207695_100029818 391
211 3300025919 Ga0207657_10001156 Ga0207657_100011562 391
212 3300025927 Ga0207687_10109545 Ga0207687_101095452 391
213 3300025932 Ga0207690_10000067 Ga0207690_1000006714 391
214 3300044683 Ga0466965_0030232 Ga0466965_0030232_1215_2468 391
215 3300044693 Ga0466961_0000117 Ga0466961_0000117_20026_21279 391
216 3300046463 Ga0495653_0123968 Ga0495653_0123968_466_1719 391
217 3300046472 Ga0495580_0002002 Ga0495580_0002002_15935_17200 391
218 3300046516 Ga0495628_0036645 Ga0495628_0036645_2181_3434 391
219 3300046524 Ga0495648_0071164 Ga0495648_0071164_241_1494 391
220 3300046529 Ga0495652_0013336 Ga0495652_0013336_5940_7193 391
221 3300046642 Ga0495634_0029807 Ga0495634_0029807_106_1359 391
222 3300047317 Ga0495604_0101053 Ga0495604_0101053_650_1903 391
223 3300047322 Ga0495680_0076749 Ga0495680_0076749_1008_2261 391
224 3300048088 Ga0495602_0021872 Ga0495602_0021872_299_1552 391
225 3300048924 Ga0496121_0000024 Ga0496121_0000024_48075_49325 391
226 iso_pu_bacteria 2510065045 2510248053 391
227 iso_pu_bacteria 8018845410 8018846496 391
228 iso_pu_bacteria 8020945358 8020948599 391
229 3300003215 JGI25153J46596_10000172 JGI25153J46596_1000017255 392
230 3300003791 Ga0055530_10002834 Ga0055530_100028342 392
231 3300003794 Ga0055531_10000431 Ga0055531_1000043140 392
232 3300005327 Ga0070658_10000081 Ga0070658_1000008148 392
233 3300005539 Ga0068853_100000140 Ga0068853_1000001405 392
234 3300005563 Ga0068855_100000313 Ga0068855_10000031344 392
235 3300005616 Ga0068852_100000112 Ga0068852_10000011239 392
236 3300005616 Ga0068852_100111301 Ga0068852_1001113013 392
237 3300025292 Ga0209676_1008928 Ga0209676_10089284 392
238 3300025297 Ga0209758_1000007 Ga0209758_100000711 392
239 3300025297 Ga0209758_1020195 Ga0209758_10201952 392
240 3300025298 Ga0209050_1000801 Ga0209050_100080143 392
241 3300025298 Ga0209050_1002605 Ga0209050_10026052 392
242 3300025303 Ga0209051_1029839 Ga0209051_10298392 392
243 3300025304 Ga0209257_1000558 Ga0209257_10005584 392
244 3300025904 Ga0207647_10078104 Ga0207647_100781043 392
245 3300025909 Ga0207705_10000193 Ga0207705_1000019310 392
246 3300025913 Ga0207695_10000250 Ga0207695_1000025061 392
247 3300025914 Ga0207671_10000100 Ga0207671_1000010084 392
248 3300025924 Ga0207694_10211043 Ga0207694_102110432 392
249 3300025949 Ga0207667_10000006 Ga0207667_10000006360 392
250 3300025949 Ga0207667_10000091 Ga0207667_1000009154 392
251 3300026041 Ga0207639_10000038 Ga0207639_10000038100 392
252 3300026142 Ga0207698_10000081 Ga0207698_100000817 392
253 3300026142 Ga0207698_10001707 Ga0207698_1000170713 392
254 3300037418 Ga0395900_0227558 Ga0395900_0227558_38_1219 392
255 3300037466 Ga0395898_0030194 Ga0395898_0030194_201_1382 392
256 3300041410 Ga0439461_0001699 Ga0439461_0001699_10_1254 392
257 3300041997 Ga0439431_0003370 Ga0439431_0003370_900_2144 392
258 3300042004 Ga0439445_0002506 Ga0439445_0002506_2767_3972 392
259 3300048926 Ga0496123_0037559 Ga0496123_0037559_1915_3114 392
260 3300048926 Ga0496123_0138889 Ga0496123_0138889_92_1291 392
261 3300053158 Ga0500627_0000165 Ga0500627_0000165_14782_15993 392
262 iso_pu_bacteria 2895880812 2895884663 392
263 3300046455 Ga0495603_0065232 Ga0495603_0065232_556_1827 393
264 3300049663 Ga0501223_000018 Ga0501223_000018_58460_59653 393
265 3300049664 Ga0501224_000002 Ga0501224_000002_165634_166827 393
266 3300049668 Ga0501233_000006 Ga0501233_000006_34759_35952 393
267 3300049688 Ga0501259_001125 Ga0501259_001125_158_1468 393
268 3300049690 Ga0501261_000033 Ga0501261_000033_8262_9572 393
269 3300049707 Ga0501234_000167 Ga0501234_000167_4213_5406 393
270 3300049778 Ga0501282_001205 Ga0501282_001205_552_1748 393
271 3300049853 Ga0501226_000026 Ga0501226_000026_15323_16516 393
272 3300046524 Ga0495648_0000088 Ga0495648_0000088_7618_8814 394
273 3300046660 Ga0495625_0020685 Ga0495625_0020685_250_1446 394
274 3300031903 Ga0307407_10150897 Ga0307407_101508971 395
275 iso_pu_bacteria 2582581305 2585261029 395
276 3300009177 Ga0105248_10044174 Ga0105248_100441742 397
277 3300009553 Ga0105249_10013177 Ga0105249_100131773 397
278 3300025735 Ga0207713_1017868 Ga0207713_10178681 397
279 3300028380 Ga0268265_10059288 Ga0268265_100592883 397
280 3300032004 Ga0307414_10005919 Ga0307414_100059192 397
281 3300049777 Ga0501281_00253 Ga0501281_00253_3918_5183 397
282 3300002075 JGI24738J21930_10003045 JGI24738J21930_100030455 399
283 3300005539 Ga0068853_100125072 Ga0068853_1001250721 399
284 3300009174 Ga0105241_10127654 Ga0105241_101276543 399
285 3300009553 Ga0105249_10049568 Ga0105249_100495683 399
286 3300010375 Ga0105239_10207632 Ga0105239_102076323 399
287 3300048927 Ga0496124_0095939 Ga0496124_0095939_304_1578 399
288 iso_pu_bacteria 2738541275 2738710940 400
289 iso_pu_bacteria 2738541301 2738849365 400
290 iso_pu_bacteria 2738541304 2738865094 400
291 iso_pu_bacteria 2738543022 2739297612 400
292 iso_pu_bacteria 2738543033 2739359290 400
293 iso_pu_bacteria 2928100450 2928101049 400
294 iso_pu_bacteria 2928959182 2928962122 400
295 iso_pu_bacteria 2928959182 2928963020 400
296 3300031548 Ga0307408_100006942 Ga0307408_1000069422 401
297 3300046692 Ga0495671_0009906 Ga0495671_0009906_852_2132 402
298 3300053118 Ga0500594_0002376 Ga0500594_0002376_967_2247 402
299 3300053133 Ga0500655_000008 Ga0500655_000008_64116_65567 402
300 3300002774 JGI25150J39212_1000098 JGI25150J39212_100009825 403
301 3300003215 JGI25153J46596_10000055 JGI25153J46596_10000055111 403
302 3300009177 Ga0105248_10015198 Ga0105248_100151983 403
303 3300025245 Ga0207425_1000005 Ga0207425_1000005590 403
304 3300025258 Ga0209129_1000423 Ga0209129_100042326 403
305 3300025294 Ga0209025_1000873 Ga0209025_100087338 403
306 3300025297 Ga0209758_1000002 Ga0209758_1000002754 403
307 3300025941 Ga0207711_10000676 Ga0207711_1000067628 403
308 3300031731 Ga0307405_10043774 Ga0307405_100437741 403
309 3300031911 Ga0307412_10103766 Ga0307412_101037661 403
310 2162886007 SwRhRL2b_contig_2508598 SwRhRL2b_0331.00001560 404
311 3300005289 Ga0065704_10071395 Ga0065704_100713953 404
312 3300005347 Ga0070668_100142202 Ga0070668_1001422021 404
313 3300005353 Ga0070669_100000459 Ga0070669_10000045923 404
314 3300005367 Ga0070667_100011172 Ga0070667_1000111724 404
315 3300005548 Ga0070665_100001398 Ga0070665_10000139812 404
316 3300005617 Ga0068859_100288220 Ga0068859_1002882202 404
317 3300005843 Ga0068860_100086891 Ga0068860_1000868912 404
318 3300006931 Ga0097620_100288242 Ga0097620_1002882422 404
319 3300009101 Ga0105247_10046684 Ga0105247_100466843 404
320 3300025735 Ga0207713_1038824 Ga0207713_10388241 404
321 3300025923 Ga0207681_10000676 Ga0207681_100006762 404
322 3300025986 Ga0207658_10001370 Ga0207658_100013709 404
323 3300028381 Ga0268264_10155174 Ga0268264_101551742 404
324 3300046522 Ga0495643_0070473 Ga0495643_0070473_128_1543 404
325 3300048903 Ga0496100_0051926 Ga0496100_0051926_204_1472 404
326 3300048905 Ga0496102_0000377 Ga0496102_0000377_13180_14448 404
327 3300048906 Ga0496103_0000128 Ga0496103_0000128_66507_67775 404
328 3300048916 Ga0496113_0017250 Ga0496113_0017250_3304_4572 404
329 3300048920 Ga0496117_0003410 Ga0496117_0003410_16526_17794 404
330 3300048921 Ga0496118_0017222 Ga0496118_0017222_3463_4731 404
331 3300048922 Ga0496119_0002895 Ga0496119_0002895_1957_3225 404
332 3300048923 Ga0496120_0003995 Ga0496120_0003995_3116_4384 404
333 3300048926 Ga0496123_0001729 Ga0496123_0001729_12957_14225 404
334 3300048927 Ga0496124_0011208 Ga0496124_0011208_4035_5303 404
335 3300048929 Ga0496126_0000493 Ga0496126_0000493_14741_16009 404
336 3300049823 Ga0501044_0001276 Ga0501044_0001276_11294_12571 404

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF22022

Phage_int_M

Phage integrase central domain

138

233

0.97

PF13356

Arm-DNA-bind_3

Arm DNA-binding domain

49

131

0.95

PF00589

Phage_integrase

Phage integrase family

247

410

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
3rmp-assembly1.cif.gz_C structural basis for the recognition of attp substrates by p4-like integrases 0.9454 3 74
3jtz-assembly1.cif.gz_A structure of the arm-type binding domain of hpi integrase 0.9245 3 74
3ju0-assembly1.cif.gz_A structure of the arm-type binding domain of hai7 integrase 0.9219 3 81
3rmp-assembly1.cif.gz_C structural basis for the recognition of attp substrates by p4-like integrases 0.8978 3 74
2khv-assembly1.cif.gz_A solution nmr structure of protein nmul_a0922 from nitrosospira multiformis. northeast structural genomics consortium target nmr38b. 0.8586 92 199
ID Description Score Start End Superfamily
af_P37326_1_84_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9457 4 82 3.30.160.390
3rmpC00 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9454 3 74 3.30.160.390
af_P39347_1_63_3.30.160.390 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Integrase, DNA-binding domain 0.9346 26 85 3.30.160.390
2khvA01 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tyrosine recombinase, N-terminal domain 0.9327 92 175 1.10.150.130
af_P37326_196_376_1.10.443.10 Mainly Alpha;Orthogonal Bundle;hpI Integrase; Chain A;Intergrase catalytic core 0.9269 199 376 1.10.443.10
ID Description Score Start End GO Terms
AF-A0A502J3F0-F1-model_v4 DUF4102 domain-containing protein 0.9828 3 75 GO:0015074
AF-A0A2D5HGX2-F1-model_v4 Integrase DNA-binding domain-containing protein 0.9784 4 79 GO:0015074
AF-A0A2W6VED1-F1-model_v4 Integrase DNA-binding domain-containing protein 0.9689 1 83 GO:0015074
AF-A0A826J6A7-F1-model_v4 Integrase 0.9583 231 381 GO:0003677
GO:0006310
GO:0015074
AF-A0A258GVM3-F1-model_v4 Integrase DNA-binding domain-containing protein 0.9571 4 79 GO:0015074

Feature Viewer

pLDDT pTM Quality
85.1 0.56 Medium
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Predicted Structure (AlphaFold2)

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