F411815

General Info

Members Datasets Scaffolds Average Seq Length
334 234 668 342

Family's Representative Sequence

Representative Sequence 3300025303|Ga0209051_1001722|Ga0209051_100172217
Length 382
Sequence MEPLRVLDFVHKVSFAIILKTYNWQTDGVSCDHDLDAVGGQAMKKALITGVTGQDGSYLAELLLAKGYEVHGLIRRSSTFNTARIDHLYVDPHEPGARFFLHYGDLSDGARLVTLIATINPDEVYNLAAQSHVRVSFDEPEHTADTTGSGTIRLLEAIRIANVDCRFYQASSSEMFGATPPPQNEDTPFYPRSPYGAAKVYSYWITRNYREAYGMFASNGILFNHESPRRGETFVTRKITRAAARIKAGIEQNLYLGNLEAIRDWGYAPEYVEGMWRMLQVDTPDDYVLATGGNFTVQDFLDAAFTHAGLDWREHVRFDERYLRPTEVDALVGDASKAHQQLGWKAQVHTPELARIMVDADIAALECQGKPWIDTPLVTTWN

Samples

Sample ID Description Type Environment
1 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
6 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
7 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
10 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
13 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
24 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
25 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
26 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
27 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
28 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
29 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
30 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
31 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
32 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
33 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
34 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
38 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
39 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
40 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
45 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
46 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
47 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
48 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
49 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
69 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
70 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
71 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
72 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
73 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
74 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
75 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
76 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
77 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
78 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
79 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
80 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
81 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
82 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
83 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
84 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
85 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
86 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
87 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
88 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
89 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
90 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
91 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
92 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
93 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
94 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
95 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
96 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
97 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
98 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
99 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
100 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
101 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
102 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
103 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
104 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
105 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
106 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
107 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
108 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
109 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
110 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
111 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
112 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
113 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
114 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
115 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
116 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
117 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
118 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
119 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
120 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
121 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
122 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
123 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
124 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
125 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
126 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
127 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
128 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
129 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
130 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
131 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
132 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
133 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
134 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
135 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
136 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
137 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
138 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
139 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
140 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
141 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
148 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
149 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
150 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
151 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
152 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
153 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
154 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
155 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
156 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
157 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
158 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
159 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
160 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
161 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
162 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
163 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
164 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
165 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
166 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
167 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
168 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
169 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
170 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
171 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
172 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
173 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
174 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
175 2643221572 Leifsonia sp. Root60 Isolate Unclassified
176 2643221615 Nocardioides sp. Root224 Isolate Unclassified
177 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
178 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
179 2738543028 Mycobacterium sp. YR782 Isolate Unclassified
180 2738543034 Rhodococcus sp. OK269 Isolate Unclassified
181 2739367653 Kocuria sp. OV113 Isolate Unclassified
182 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
183 2773857759 Microbacterium sp. 1294 Isolate Unclassified
184 2799112218 Motilibacter rhizosphaerae DSM 45622 Isolate Rhizosphere
185 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
186 2808606371 Arthrobacter sp. SLBN-53 Isolate Unclassified
187 2811994871 Arthrobacter sp. SLBN-179 Isolate Unclassified
188 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
189 2816332305 Kocuria rhizophila FDAARGOS_302 Isolate Rhizosphere
190 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
191 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
192 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
193 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
194 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
195 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
196 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
197 2857727296 Kocuria sp. R-72562 Isolate Unclassified
198 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
199 2857737099 Lysinimonas sp. R-73066 Isolate Unclassified
200 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
201 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
202 2902799365 Mycolicibacterium sp. P1-5 Isolate Unclassified
203 2902810491 Mycolicibacterium sp. P9-22 Isolate Unclassified
204 2902837492 Mycolicibacterium sp. P1-18 Isolate Unclassified
205 2904497146 Arthrobacter sp. 1276 Isolate Rhizosphere
206 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
207 2904509784 Microbacterium sp. 1676 Isolate Rhizosphere
208 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
209 2904770941 Rhodococcus fascians 1339 Isolate Rhizosphere
210 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
211 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
212 2919069694 Microbacterium sp. 1154 Isolate Unclassified
213 2919391150 Arthrobacter ipis 2973 Isolate Unclassified
214 2920879853 Kocuria salina CV6 Isolate Unclassified
215 2922554459 Rhodococcus sp. 66b Isolate Unclassified
216 2928500415 Curtobacterium oceanosedimentum 1257 Isolate Rhizosphere
217 2939582691 Mycolicibacterium sp. 624 Isolate Rhizosphere
218 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
219 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
220 2945920336 Pseudarthrobacter siccitolerans W1I3 Isolate Rhizosphere
221 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere
222 2946037020 Arthrobacter sp. W4I7 Isolate Rhizosphere
223 2946059875 Arthrobacter sp. SLBN-112 Isolate Rhizosphere
224 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
225 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
226 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
227 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
228 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
229 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
230 2984592036 Aeromicrobium sp. SORGH_AS981 Isolate Aerial Root
231 2990088156 Streptomyces albidus CAP 215 Isolate Unclassified
232 8004021418 Arthrobacter sp. SDTb3-6 Isolate Rhizosphere
233 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
234 8054107350 Arthrobacter rhizosphaerae CCNWLXL 1-35 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 79.64
Metatranscriptomes 0
Isolates 20.36

Biome Distribution

Category Percentage (%)
Aerial Root 1.2
Bulb 0
Endosphere 21.56
Nodule 0
Rhizoplane 2.99
Rhizosphere 54.19
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0209051_1001722 3300025303 Bacteria 17468
2 JGI24740J21852_10013545 3300001979 Bacteria 3037
3 JGI24739J22299_10011603 3300001989 Bacteria 3251
4 JGI24737J22298_10006630 3300001990 Bacteria 3943
5 Ga0055540_1024496 3300003792 Bacteria 1496
6 Ga0070670_100314089 3300005331 Bacteria 1372
7 Ga0070689_100316089 3300005340 Bacteria 1303
8 Ga0070668_100000209 3300005347 Bacteria 38393
9 Ga0070671_100048905 3300005355 Bacteria 3518
10 Ga0070674_100135518 3300005356 Bacteria 1841
11 Ga0070667_100000699 3300005367 Bacteria 32344
12 Ga0070667_100029466 3300005367 Bacteria 4573
13 Ga0070667_100315893 3300005367 Bacteria 1409
14 Ga0070700_100221874 3300005441 Bacteria 1340
15 Ga0070708_100046406 3300005445 Bacteria 3833
16 Ga0070708_100077582 3300005445 Bacteria 3002
17 Ga0070708_100294678 3300005445 Bacteria 1527
18 Ga0070678_100060687 3300005456 Bacteria 2784
19 Ga0070706_100142741 3300005467 Bacteria 2235
20 Ga0070707_100100655 3300005468 Bacteria 2800
21 Ga0070698_100265203 3300005471 Bacteria 1649
22 Ga0070699_100269181 3300005518 Bacteria 1524
23 Ga0068853_100386332 3300005539 Bacteria 1308
24 Ga0070672_100097163 3300005543 Bacteria 2384
25 Ga0068857_100021963 3300005577 Bacteria 5616
26 Ga0068856_100055181 3300005614 Bacteria 3921
27 Ga0068856_100491007 3300005614 Bacteria 1249
28 Ga0068859_100002149 3300005617 Bacteria 20034
29 Ga0068866_10044266 3300005718 Bacteria 2226
30 Ga0068863_100001133 3300005841 Bacteria 26626
31 Ga0068863_100291429 3300005841 Bacteria 1582
32 Ga0068860_100000144 3300005843 Bacteria 116029
33 Ga0068860_100239818 3300005843 Bacteria 1763
34 Ga0081538_10101261 3300005981 Bacteria 1450
35 Ga0081540_1082729 3300005983 Bacteria 1439
36 Ga0075365_10000356 3300006038 Bacteria 16470
37 Ga0075365_10078920 3300006038 Bacteria 2227
38 Ga0075365_10121644 3300006038 Bacteria 1801
39 Ga0075365_10263305 3300006038 Bacteria 1212
40 Ga0075363_100000033 3300006048 Bacteria 26948
41 Ga0075363_100000674 3300006048 Bacteria 11445
42 Ga0075364_10011994 3300006051 Bacteria 5284
43 Ga0075364_10015353 3300006051 Bacteria 4747
44 Ga0075364_10023350 3300006051 Bacteria 3916
45 Ga0075364_10026016 3300006051 Bacteria 3730
46 Ga0075364_10059484 3300006051 Bacteria 2505
47 Ga0075364_10162454 3300006051 Bacteria 1508
48 Ga0075362_10048345 3300006177 Bacteria 1898
49 Ga0075362_10056197 3300006177 Bacteria 1771
50 Ga0075362_10078658 3300006177 Bacteria 1517
51 Ga0075369_10002316 3300006186 Bacteria 6771
52 Ga0075369_10003133 3300006186 Bacteria 5991
53 Ga0075369_10023317 3300006186 Bacteria 2558
54 Ga0075369_10054631 3300006186 Bacteria 1734
55 Ga0075369_10060052 3300006186 Bacteria 1657
56 Ga0075370_10001342 3300006353 Bacteria 10592
57 Ga0075370_10001825 3300006353 Bacteria 9524
58 Ga0075370_10076823 3300006353 Bacteria 1916
59 Ga0075370_10182531 3300006353 Bacteria 1235
60 Ga0075431_100243628 3300006847 Bacteria 1828
61 Ga0097620_100002149 3300006931 Bacteria 20034
62 Ga0105244_10017902 3300009036 Bacteria 3990
63 Ga0105244_10125953 3300009036 Bacteria 1238
64 Ga0105245_10046601 3300009098 Bacteria 3874
65 Ga0105243_10076480 3300009148 Bacteria 2720
66 Ga0105248_10000054 3300009177 Bacteria 143260
67 Ga0105248_10077942 3300009177 Bacteria 3726
68 Ga0105239_10149141 3300010375 Bacteria 2610
69 Ga0157370_10001330 3300013104 Bacteria 30668
70 Ga0163162_10088572 3300013306 Bacteria 3174
71 Ga0157375_10369832 3300013308 Bacteria 1600
72 Ga0163163_10088725 3300014325 Bacteria 3104
73 Ga0163163_10471043 3300014325 Bacteria 1317
74 Ga0157380_10028363 3300014326 Bacteria 4267
75 Ga0157376_10039666 3300014969 Bacteria 3842
76 Ga0213876_10031864 3300021384 Bacteria 2781
77 Ga0209051_1031920 3300025303 Bacteria 2018
78 Ga0209051_1044688 3300025303 Bacteria 1540
79 Ga0207655_1006279 3300025728 Bacteria 7903
80 Ga0207642_10135374 3300025899 Bacteria 1292
81 Ga0207684_10000237 3300025910 Bacteria 83348
82 Ga0207646_10000432 3300025922 Bacteria 55895
83 Ga0207687_10032460 3300025927 Bacteria 3536
84 Ga0207644_10002256 3300025931 Bacteria 12504
85 Ga0207644_10067010 3300025931 Bacteria 2616
86 Ga0207669_10128539 3300025937 Bacteria 1736
87 Ga0207704_10030864 3300025938 Bacteria 3011
88 Ga0207691_10030173 3300025940 Bacteria 5068
89 Ga0207711_10000587 3300025941 Bacteria 36891
90 Ga0207668_10001895 3300025972 Bacteria 12250
91 Ga0207658_10000410 3300025986 Bacteria 40700
92 Ga0207658_10268868 3300025986 Bacteria 1456
93 Ga0207708_10012710 3300026075 Bacteria 6278
94 Ga0207702_10040392 3300026078 Bacteria 3912
95 Ga0207702_10285264 3300026078 Bacteria 1562
96 Ga0207641_10010091 3300026088 Bacteria 7766
97 Ga0207674_10060045 3300026116 Bacteria 3846
98 Ga0207683_10106096 3300026121 Bacteria 2512
99 Ga0268266_10010373 3300028379 Bacteria 8145
100 Ga0268266_10044949 3300028379 Bacteria 3776
101 Ga0268264_10000005 3300028381 Bacteria 934972
102 Ga0268264_10144483 3300028381 Bacteria 2125
103 Ga0265323_10006678 3300028653 Bacteria 4836
104 Ga0316182_1187088 3300030745 Bacteria 3609
105 Ga0265330_10000028 3300031235 Archaea 138261
106 Ga0265327_10050458 3300031251 Bacteria 2177
107 Ga0265316_10006307 3300031344 Bacteria 11355
108 Ga0265316_10068797 3300031344 Bacteria 2734
109 Ga0307408_100106604 3300031548 Bacteria 2144
110 Ga0265342_10000015 3300031712 Archaea 194661
111 Ga0316576_10112279 3300031727 Bacteria 2043
112 Ga0307410_10127243 3300031852 Bacteria 1867
113 Ga0307406_10000016 3300031901 Bacteria 106175
114 Ga0307409_100013481 3300031995 Bacteria 5263
115 Ga0307416_100027316 3300032002 Bacteria 4224
116 Ga0316574_0054526 3300035398 Bacteria 2497
117 Ga0395900_0001878 3300037418 Bacteria 23883
118 Ga0395900_0002188 3300037418 Bacteria 21854
119 Ga0395898_0000490 3300037466 Bacteria 78132
120 Ga0395898_0002334 3300037466 Bacteria 22639
121 Ga0395901_0059666 3300038443 Bacteria 3969
122 Ga0395901_0347305 3300038443 Bacteria 1532
123 Ga0395901_0509154 3300038443 Bacteria 1225
124 Ga0400490_00754 3300038726 Bacteria 29289
125 Ga0400491_09263 3300038727 Bacteria 6331
126 Ga0400485_00438 3300038735 Bacteria 2467
127 Ga0436365_0470082 3300039437 Bacteria 3214
128 Ga0439438_000639 3300041405 Bacteria 15753
129 Ga0439465_0000073 3300041413 Bacteria 22200
130 Ga0439465_0020369 3300041413 Bacteria 2077
131 Ga0439465_0032905 3300041413 Bacteria 1656
132 Ga0451793_0681864 3300041452 Bacteria 1772
133 Ga0439433_0000033 3300041999 Bacteria 17255
134 Ga0439442_003232 3300042002 Bacteria 3223
135 Ga0439432_000512 3300042006 Bacteria 14433
136 Ga0439449_0011455 3300042007 Bacteria 3336
137 Ga0439449_0015575 3300042007 Bacteria 2858
138 Ga0439452_000877 3300042010 Bacteria 13895
139 Ga0439457_000644 3300042014 Bacteria 10316
140 Ga0439462_0000065 3300042015 Bacteria 15578
141 Ga0450920_000268 3300042122 Bacteria 7805
142 Ga0450909_002580 3300042185 Bacteria 2568
143 Ga0439434_0000086 3300042435 Bacteria 23136
144 Ga0439440_0003173 3300042993 Bacteria 3149
145 Ga0466969_0073713 3300044656 Bacteria 1638
146 Ga0466965_0071255 3300044683 Bacteria 1748
147 Ga0466966_0080002 3300044684 Bacteria 2036
148 Ga0466961_0022402 3300044693 Bacteria 4064
149 Ga0453684_0030866 3300044712 Bacteria 7556
150 Ga0453684_0183909 3300044712 Bacteria 2451
151 Ga0466970_0007227 3300044765 Bacteria 5561
152 Ga0466957_0085122 3300044842 Bacteria 1974
153 Ga0466960_0000462 3300044901 Bacteria 13932
154 Ga0466959_0041865 3300045049 Bacteria 3380
155 Ga0466958_0075392 3300045836 Bacteria 2069
156 Ga0466967_0079937 3300045976 Bacteria 2949
157 Ga0495638_0009244 3300046460 Bacteria 6930
158 Ga0495651_0000088 3300046462 Bacteria 67001
159 Ga0495643_0030418 3300046522 Bacteria 3015
160 Ga0495668_0000116 3300046616 Bacteria 124611
161 Ga0495668_0008867 3300046616 Bacteria 6230
162 Ga0495611_0002044 3300046648 Bacteria 9513
163 Ga0495625_0034424 3300046660 Bacteria 3739
164 Ga0495600_0062872 3300046809 Bacteria 2426
165 Ga0495660_0042537 3300046810 Bacteria 2510
166 Ga0495680_0000639 3300047322 Bacteria 39236
167 Ga0495687_003947 3300047443 Bacteria 10371
168 Ga0495687_009734 3300047443 Bacteria 5340
169 Ga0495675_0019358 3300047444 Bacteria 4324
170 Ga0496102_0000063 3300048905 Bacteria 164782
171 Ga0496102_0005824 3300048905 Bacteria 10483
172 Ga0496103_0000941 3300048906 Bacteria 20854
173 Ga0496104_0014059 3300048907 Bacteria 7225
174 Ga0496104_0052234 3300048907 Bacteria 3860
175 Ga0496105_0063498 3300048908 Bacteria 3046
176 Ga0496108_0403986 3300048911 Bacteria 1193
177 Ga0496109_0464602 3300048912 Bacteria 1195
178 Ga0496111_0125565 3300048914 Bacteria 1896
179 Ga0496116_0007824 3300048919 Bacteria 9390
180 Ga0496117_0000552 3300048920 Bacteria 61493
181 Ga0496118_0000317 3300048921 Bacteria 83419
182 Ga0496119_0004521 3300048922 Bacteria 13801
183 Ga0496121_0015623 3300048924 Bacteria 7926
184 Ga0496122_0000105 3300048925 Bacteria 194509
185 Ga0496122_0028550 3300048925 Bacteria 4729
186 Ga0496123_0000075 3300048926 Bacteria 194499
187 Ga0496124_0008968 3300048927 Bacteria 10352
188 Ga0496124_0013740 3300048927 Bacteria 7881
189 Ga0496124_0016636 3300048927 Bacteria 6980
190 Ga0496124_0020474 3300048927 Bacteria 6109
191 Ga0496124_0100081 3300048927 Bacteria 2350
192 Ga0496125_0001080 3300048928 Bacteria 41975
193 Ga0496125_0003291 3300048928 Bacteria 19820
194 Ga0496125_0003509 3300048928 Bacteria 18938
195 Ga0496125_0005377 3300048928 Bacteria 14283
196 Ga0496125_0079104 3300048928 Bacteria 2523
197 Ga0496126_0001220 3300048929 Bacteria 41810
198 Ga0496126_0001852 3300048929 Bacteria 30819
199 Ga0496126_0003456 3300048929 Bacteria 19930
200 Ga0496126_0011880 3300048929 Bacteria 8955
201 Ga0496126_0367807 3300048929 Bacteria 1173
202 Ga0501034_0068762 3300049571 Bacteria 3552
203 Ga0501037_0033078 3300049573 Bacteria 3820
204 Ga0501038_0003960 3300049574 Bacteria 13757
205 Ga0501038_0034617 3300049574 Bacteria 4440
206 Ga0501038_0055995 3300049574 Bacteria 3387
207 Ga0501043_0063737 3300049579 Bacteria 2894
208 Ga0501046_0327391 3300049580 Bacteria 1115
209 Ga0501047_0167668 3300049581 Bacteria 2066
210 Ga0501067_0002021 3300049583 Bacteria 11188
211 Ga0501068_0014943 3300049584 Bacteria 4448
212 Ga0501070_0010345 3300049586 Bacteria 7885
213 Ga0501072_0008027 3300049588 Bacteria 8012
214 Ga0501073_0003474 3300049589 Bacteria 11826
215 Ga0501074_0001114 3300049590 Bacteria 17529
216 Ga0501077_0004739 3300049593 Bacteria 8267
217 Ga0501079_0007173 3300049741 Bacteria 8413
218 Ga0501080_0004385 3300049742 Bacteria 12534
219 Ga0501083_0000004 3300049744 Bacteria 207886
220 Ga0501083_0004573 3300049744 Bacteria 9773
221 nmdc:mga03683_102411_c1 3300050489 Bacteria 1259
222 nmdc:mga03683_14797_c1 3300050489 Bacteria 2895
223 nmdc:mga03n38_14697_c1 3300050490 Bacteria 3008
224 nmdc:mga03n38_31366_c1 3300050490 Bacteria 2242
225 nmdc:mga03n38_3823_c1 3300050490 Bacteria 4892
226 nmdc:mga00v17_125490_c1 3300050491 Bacteria 1637
227 nmdc:mga00v17_131420_c1 3300050491 Bacteria 1600
228 nmdc:mga00v17_135685_c1 3300050491 Bacteria 1575
229 nmdc:mga00v17_136693_c1 3300050491 Bacteria 1569
230 nmdc:mga00v17_143858_c1 3300050491 Bacteria 1530
231 nmdc:mga00v17_150986_c1 3300050491 Bacteria 1493
232 nmdc:mga00v17_168275_c1 3300050491 Bacteria 1412
233 nmdc:mga00v17_1772_c2 3300050491 Bacteria 3997
234 nmdc:mga00v17_22326_c2 3300050491 Bacteria 2507
235 nmdc:mga00v17_27833_c1 3300050491 Bacteria 3304
236 nmdc:mga00v17_42041_c1 3300050491 Bacteria 2747
237 nmdc:mga00v17_9435_c1 3300050491 Bacteria 5281
238 nmdc:mga0yw44_1372_c1 3300050492 Bacteria 9654
239 nmdc:mga0yw44_34797_c1 3300050492 Bacteria 2136
240 nmdc:mga0yw44_60396_c1 3300050492 Bacteria 2322
241 nmdc:mga07m45_1530_c1 3300050496 Bacteria 7839
242 nmdc:mga07m45_18909_c1 3300050496 Bacteria 3727
243 nmdc:mga07m45_26595_c1 3300050496 Bacteria 3181
244 nmdc:mga07m45_41536_c1 3300050496 Bacteria 2575
245 nmdc:mga07m45_5496_c1 3300050496 Bacteria 6312
246 nmdc:mga07m45_76371_c1 3300050496 Bacteria 1910
247 nmdc:mga0sz30_3483_c1 3300050516 Bacteria 5674
248 nmdc:mga0sz30_6702_c1 3300050516 Bacteria 3235
249 nmdc:mga0sz30_70965_c2 3300050516 Bacteria 1193
250 nmdc:mga0sz30_8441_c1 3300050516 Bacteria 2955
251 Ga0500610_0000272 3300053079 Bacteria 15730
252 Ga0500646_0026467 3300053090 Bacteria 1573
253 Ga0500641_0012890 3300053096 Bacteria 3062
254 Ga0500556_0005151 3300053104 Bacteria 3697
255 Ga0500562_001323 3300053108 Bacteria 6115
256 Ga0500559_0000293 3300053136 Bacteria 38669
257 Ga0500559_0000884 3300053136 Bacteria 19190
258 Ga0500573_0000080 3300053140 Bacteria 46390
259 Ga0500573_0004219 3300053140 Bacteria 7538
260 Ga0500573_0013306 3300053140 Bacteria 4635
261 Ga0500573_0015761 3300053140 Bacteria 4287
262 Ga0500573_0026431 3300053140 Bacteria 3335
263 Ga0500616_0003741 3300053153 Bacteria 11350
264 Ga0500616_0024137 3300053153 Bacteria 3383
265 Ga0501084_0024292 3300054114 Bacteria 5054
266 Ga0501082_0009673 3300060353 Bacteria 8301
267 2523383840 2523231044 Bacteria 6434991
268 2566991602 2565956761 Bacteria 6601618
269 2566991614 2565956761 Bacteria 6601618
270 2566992853 2565956761 Bacteria 6601618
271 2643874615 2643221572 Bacteria 3614809
272 2644090874 2643221615 Bacteria 5487866
273 2644320677 2643221657 Bacteria 5490246
274 2644381671 2643221669 Bacteria 3611286
275 2739329865 2738543028 Bacteria 6917070
276 2739364473 2738543034 Bacteria 6084756
277 2739604405 2739367653 Bacteria 2780952
278 2774378601 2773857758 Bacteria 3592392
279 2774381963 2773857759 Bacteria 2963774
280 2799183327 2799112218 Bacteria 4315149
281 2808884556 2808606368 Bacteria 3174172
282 2808895443 2808606371 Bacteria 4251511
283 2812320052 2811994871 Bacteria 4497550
284 2812322134 2811994872 Bacteria 4121241
285 2817509971 2816332305 Bacteria 2697803
286 2819690814 2818991462 Bacteria 4320267
287 2821269048 2821268502 Bacteria 3750023
288 2839986671 2839986021 Bacteria 3685650
289 2855389746 2855386786 Bacteria 4752232
290 2857483667 2857481737 Bacteria 4761446
291 2857722145 2857720070 Bacteria 3189373
292 2857723281 2857723135 Bacteria 4217853
293 2857728835 2857727296 Bacteria 2745552
294 2857735979 2857733635 Bacteria 3532004
295 2857737509 2857737099 Bacteria 3104305
296 2870629436 2870628048 Bacteria 3696012
297 2895663370 2895660088 Bacteria 3782833
298 2902802907 2902799365 Bacteria 5419524
299 2902813812 2902810491 Bacteria 6794147
300 2902842460 2902837492 Bacteria 6697721
301 2904498813 2904497146 Bacteria 4731781
302 2904500697 2904497146 Bacteria 4731781
303 2904504730 2904501621 Bacteria 3401437
304 2904511690 2904509784 Bacteria 3520416
305 2904541132 2904535858 Bacteria 6308016
306 2904773967 2904770941 Bacteria 5580202
307 2905928220 2905926851 Bacteria 4423176
308 2908678687 2908678064 Bacteria 3482747
309 2919071038 2919069694 Bacteria 3622919
310 2919393686 2919391150 Bacteria 4884741
311 2920883532 2920879853 Bacteria 4216831
312 2922560767 2922554459 Bacteria 6683962
313 2922560779 2922554459 Bacteria 6683962
314 2928501810 2928500415 Bacteria 3384541
315 2939586731 2939582691 Bacteria 7088898
316 2939660182 2939657138 Bacteria 3740283
317 2939663374 2939660829 Bacteria 3784848
318 2945921949 2945920336 Bacteria 4501603
319 2946003823 2946003308 Bacteria 3857229
320 2946037813 2946037020 Bacteria 4900426
321 2946061614 2946059875 Bacteria 4386623
322 2974319188 2974315732 Bacteria 4602776
323 2974319219 2974315732 Bacteria 4602776
324 2977231719 2977228692 Bacteria 3450105
325 2977252125 2977251589 Bacteria 2952848
326 2977267032 2977264416 Bacteria 3750737
327 2984527415 2984523437 Bacteria 4508481
328 2984527446 2984523437 Bacteria 4508481
329 2984582338 2984580707 Bacteria 3351387
330 2984592379 2984592036 Bacteria 3670284
331 2990093205 2990088156 Bacteria 6657676
332 8004023837 8004021418 Bacteria 4313954
333 8045832772 8045830549 Bacteria 4444727
334 8054110826 8054107350 Bacteria 5022511
335 Ga0209051_1001722
336 JGI24740J21852_10013545
337 JGI24739J22299_10011603
338 JGI24737J22298_10006630
339 Ga0055540_1024496
340 Ga0070670_100314089
341 Ga0070689_100316089
342 Ga0070668_100000209
343 Ga0070671_100048905
344 Ga0070674_100135518
345 Ga0070667_100000699
346 Ga0070667_100029466
347 Ga0070667_100315893
348 Ga0070700_100221874
349 Ga0070708_100046406
350 Ga0070708_100077582
351 Ga0070708_100294678
352 Ga0070678_100060687
353 Ga0070706_100142741
354 Ga0070707_100100655
355 Ga0070698_100265203
356 Ga0070699_100269181
357 Ga0068853_100386332
358 Ga0070672_100097163
359 Ga0068857_100021963
360 Ga0068856_100055181
361 Ga0068856_100491007
362 Ga0068859_100002149
363 Ga0068866_10044266
364 Ga0068863_100001133
365 Ga0068863_100291429
366 Ga0068860_100000144
367 Ga0068860_100239818
368 Ga0081538_10101261
369 Ga0081540_1082729
370 Ga0075365_10000356
371 Ga0075365_10078920
372 Ga0075365_10121644
373 Ga0075365_10263305
374 Ga0075363_100000033
375 Ga0075363_100000674
376 Ga0075364_10011994
377 Ga0075364_10015353
378 Ga0075364_10023350
379 Ga0075364_10026016
380 Ga0075364_10059484
381 Ga0075364_10162454
382 Ga0075362_10048345
383 Ga0075362_10056197
384 Ga0075362_10078658
385 Ga0075369_10002316
386 Ga0075369_10003133
387 Ga0075369_10023317
388 Ga0075369_10054631
389 Ga0075369_10060052
390 Ga0075370_10001342
391 Ga0075370_10001825
392 Ga0075370_10076823
393 Ga0075370_10182531
394 Ga0075431_100243628
395 Ga0097620_100002149
396 Ga0105244_10017902
397 Ga0105244_10125953
398 Ga0105245_10046601
399 Ga0105243_10076480
400 Ga0105248_10000054
401 Ga0105248_10077942
402 Ga0105239_10149141
403 Ga0157370_10001330
404 Ga0163162_10088572
405 Ga0157375_10369832
406 Ga0163163_10088725
407 Ga0163163_10471043
408 Ga0157380_10028363
409 Ga0157376_10039666
410 Ga0213876_10031864
411 Ga0209051_1031920
412 Ga0209051_1044688
413 Ga0207655_1006279
414 Ga0207642_10135374
415 Ga0207684_10000237
416 Ga0207646_10000432
417 Ga0207687_10032460
418 Ga0207644_10002256
419 Ga0207644_10067010
420 Ga0207669_10128539
421 Ga0207704_10030864
422 Ga0207691_10030173
423 Ga0207711_10000587
424 Ga0207668_10001895
425 Ga0207658_10000410
426 Ga0207658_10268868
427 Ga0207708_10012710
428 Ga0207702_10040392
429 Ga0207702_10285264
430 Ga0207641_10010091
431 Ga0207674_10060045
432 Ga0207683_10106096
433 Ga0268266_10010373
434 Ga0268266_10044949
435 Ga0268264_10000005
436 Ga0268264_10144483
437 Ga0265323_10006678
438 Ga0316182_1187088
439 Ga0265330_10000028
440 Ga0265327_10050458
441 Ga0265316_10006307
442 Ga0265316_10068797
443 Ga0307408_100106604
444 Ga0265342_10000015
445 Ga0316576_10112279
446 Ga0307410_10127243
447 Ga0307406_10000016
448 Ga0307409_100013481
449 Ga0307416_100027316
450 Ga0316574_0054526
451 Ga0395900_0001878
452 Ga0395900_0002188
453 Ga0395898_0000490
454 Ga0395898_0002334
455 Ga0395901_0059666
456 Ga0395901_0347305
457 Ga0395901_0509154
458 Ga0400490_00754
459 Ga0400491_09263
460 Ga0400485_00438
461 Ga0436365_0470082
462 Ga0439438_000639
463 Ga0439465_0000073
464 Ga0439465_0020369
465 Ga0439465_0032905
466 Ga0451793_0681864
467 Ga0439433_0000033
468 Ga0439442_003232
469 Ga0439432_000512
470 Ga0439449_0011455
471 Ga0439449_0015575
472 Ga0439452_000877
473 Ga0439457_000644
474 Ga0439462_0000065
475 Ga0450920_000268
476 Ga0450909_002580
477 Ga0439434_0000086
478 Ga0439440_0003173
479 Ga0466969_0073713
480 Ga0466965_0071255
481 Ga0466966_0080002
482 Ga0466961_0022402
483 Ga0453684_0030866
484 Ga0453684_0183909
485 Ga0466970_0007227
486 Ga0466957_0085122
487 Ga0466960_0000462
488 Ga0466959_0041865
489 Ga0466958_0075392
490 Ga0466967_0079937
491 Ga0495638_0009244
492 Ga0495651_0000088
493 Ga0495643_0030418
494 Ga0495668_0000116
495 Ga0495668_0008867
496 Ga0495611_0002044
497 Ga0495625_0034424
498 Ga0495600_0062872
499 Ga0495660_0042537
500 Ga0495680_0000639
501 Ga0495687_003947
502 Ga0495687_009734
503 Ga0495675_0019358
504 Ga0496102_0000063
505 Ga0496102_0005824
506 Ga0496103_0000941
507 Ga0496104_0014059
508 Ga0496104_0052234
509 Ga0496105_0063498
510 Ga0496108_0403986
511 Ga0496109_0464602
512 Ga0496111_0125565
513 Ga0496116_0007824
514 Ga0496117_0000552
515 Ga0496118_0000317
516 Ga0496119_0004521
517 Ga0496121_0015623
518 Ga0496122_0000105
519 Ga0496122_0028550
520 Ga0496123_0000075
521 Ga0496124_0008968
522 Ga0496124_0013740
523 Ga0496124_0016636
524 Ga0496124_0020474
525 Ga0496124_0100081
526 Ga0496125_0001080
527 Ga0496125_0003291
528 Ga0496125_0003509
529 Ga0496125_0005377
530 Ga0496125_0079104
531 Ga0496126_0001220
532 Ga0496126_0001852
533 Ga0496126_0003456
534 Ga0496126_0011880
535 Ga0496126_0367807
536 Ga0501034_0068762
537 Ga0501037_0033078
538 Ga0501038_0003960
539 Ga0501038_0034617
540 Ga0501038_0055995
541 Ga0501043_0063737
542 Ga0501046_0327391
543 Ga0501047_0167668
544 Ga0501067_0002021
545 Ga0501068_0014943
546 Ga0501070_0010345
547 Ga0501072_0008027
548 Ga0501073_0003474
549 Ga0501074_0001114
550 Ga0501077_0004739
551 Ga0501079_0007173
552 Ga0501080_0004385
553 Ga0501083_0000004
554 Ga0501083_0004573
555 nmdc:mga03683_102411_c1
556 nmdc:mga03683_14797_c1
557 nmdc:mga03n38_14697_c1
558 nmdc:mga03n38_31366_c1
559 nmdc:mga03n38_3823_c1
560 nmdc:mga00v17_125490_c1
561 nmdc:mga00v17_131420_c1
562 nmdc:mga00v17_135685_c1
563 nmdc:mga00v17_136693_c1
564 nmdc:mga00v17_143858_c1
565 nmdc:mga00v17_150986_c1
566 nmdc:mga00v17_168275_c1
567 nmdc:mga00v17_1772_c2
568 nmdc:mga00v17_22326_c2
569 nmdc:mga00v17_27833_c1
570 nmdc:mga00v17_42041_c1
571 nmdc:mga00v17_9435_c1
572 nmdc:mga0yw44_1372_c1
573 nmdc:mga0yw44_34797_c1
574 nmdc:mga0yw44_60396_c1
575 nmdc:mga07m45_1530_c1
576 nmdc:mga07m45_18909_c1
577 nmdc:mga07m45_26595_c1
578 nmdc:mga07m45_41536_c1
579 nmdc:mga07m45_5496_c1
580 nmdc:mga07m45_76371_c1
581 nmdc:mga0sz30_3483_c1
582 nmdc:mga0sz30_6702_c1
583 nmdc:mga0sz30_70965_c2
584 nmdc:mga0sz30_8441_c1
585 Ga0500610_0000272
586 Ga0500646_0026467
587 Ga0500641_0012890
588 Ga0500556_0005151
589 Ga0500562_001323
590 Ga0500559_0000293
591 Ga0500559_0000884
592 Ga0500573_0000080
593 Ga0500573_0004219
594 Ga0500573_0013306
595 Ga0500573_0015761
596 Ga0500573_0026431
597 Ga0500616_0003741
598 Ga0500616_0024137
599 Ga0501084_0024292
600 Ga0501082_0009673
601 2523383840
602 2566991602
603 2566991614
604 2566992853
605 2643874615
606 2644090874
607 2644320677
608 2644381671
609 2739329865
610 2739364473
611 2739604405
612 2774378601
613 2774381963
614 2799183327
615 2808884556
616 2808895443
617 2812320052
618 2812322134
619 2817509971
620 2819690814
621 2821269048
622 2839986671
623 2855389746
624 2857483667
625 2857722145
626 2857723281
627 2857728835
628 2857735979
629 2857737509
630 2870629436
631 2895663370
632 2902802907
633 2902813812
634 2902842460
635 2904498813
636 2904500697
637 2904504730
638 2904511690
639 2904541132
640 2904773967
641 2905928220
642 2908678687
643 2919071038
644 2919393686
645 2920883532
646 2922560767
647 2922560779
648 2928501810
649 2939586731
650 2939660182
651 2939663374
652 2945921949
653 2946003823
654 2946037813
655 2946061614
656 2974319188
657 2974319219
658 2977231719
659 2977252125
660 2977267032
661 2984527415
662 2984527446
663 2984582338
664 2984592379
665 2990093205
666 8004023837
667 8045832772
668 8054110826

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

46

290

0.98

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

47

357

0.98

PF04321

RmlD_sub_bind

RmlD substrate binding domain

43

245

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1n7h-assembly1.cif.gz_A-2 crystal structure of gdp-mannose 4,6-dehydratase ternary complex with nadph and gdp 0.9786 1 327
1n7g-assembly1.cif.gz_A crystal structure of the gdp-mannose 4,6-dehydratase ternary complex with nadph and gdp-rhamnose. 0.9767 1 327
1n7h-assembly1.cif.gz_B-2 crystal structure of gdp-mannose 4,6-dehydratase ternary complex with nadph and gdp 0.9746 1 327
5uzh-assembly1.cif.gz_A crystal structure of a gdp-mannose dehydratase from naegleria fowleri 0.9731 1 324
7kf3-assembly1.cif.gz_B crystal structure of gdp-mannose 4,6-dehydratase from brucella abortus (strain 2308) in complex with guanosine-diphosphate-rhamnose 0.9723 2 327
ID Description Score Start End Superfamily
af_P0AC88_3_270_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9935 2 265 3.40.50.720
af_P0AC88_3_270_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9751 2 265 3.40.50.720
af_F1QPT3_45_368_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9676 25 319 3.40.50.720
af_Q4D941_50_182_3.90.25.10 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9617 189 302 3.90.25.10
af_Q4CM81_8_135_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9614 2 129 3.40.50.720
ID Description Score Start End GO Terms
AF-E3J4W3-F1-model_v4 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose dehydratase) 0.997 1 328 GO:0008446
GO:0042351
GO:0070401
AF-A0A2G9YHF7-F1-model_v4 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) 0.9967 98 323 GO:0008446
GO:0042351
AF-A0A7C3PXZ4-F1-model_v4 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) 0.9963 2 225 GO:0008446
GO:0042351
AF-A0A6H9KZ17-F1-model_v4 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose dehydratase) 0.995 1 326 GO:0008446
GO:0042351
GO:0070401
AF-A0A532DI86-F1-model_v4 Multifunctional fusion protein [Includes: GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose dehydratase); GDP-L-fucose synthase (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase)] 0.995 2 329 GO:0008446
GO:0016853
GO:0042351
GO:0050577
GO:0070401

Map