F407300

General Info

Members Datasets Scaffolds Average Seq Length
324 191 648 333

Family's Representative Sequence

Representative Sequence 3300005981|Ga0081538_10010931|Ga0081538_100109312
Length 318
Sequence MSVDKVRLPVAEAREIAERTLQRAGFAADEARIVAEHMIDAALCGYEYSGLAKILNVIEAPRFKQPRRPISVLRETEISTLYDGGNNVGMLALYHATQGAIEKARARGIALVGVTNSWMSGRSAHFVEMIAKADLVGIHTVSCSRLVAPLGGTKAFGLPSAEGPIVFDMGTSAFMMTEVMLRERMGESLPEGVALDRDGQPTTDARAARQGALLPFGGYKGFGLAFVMQALGLLAGSSLDLERDNGYLFIAFKPDLLVPLEQFRRELGELTARVKAVPRQQGVEEIRIPSERAFRSREKALREGIEVDRAVLEALRAM

Samples

Sample ID Description Type Environment
1 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
7 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
8 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
9 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
10 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
13 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
14 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
15 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
16 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
17 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
18 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
21 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
22 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
23 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
24 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
25 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
26 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
27 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
31 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
32 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
33 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
34 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
35 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
36 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
37 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
38 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
39 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
40 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
41 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
42 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
43 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
44 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
45 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
46 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
47 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
48 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
49 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
50 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
51 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
52 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
53 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
54 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
55 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
56 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
57 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
58 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
59 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
60 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
61 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
62 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
63 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
64 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
65 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
66 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
67 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
68 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
69 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
70 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
71 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
72 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
73 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
74 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
75 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
76 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
77 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
96 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
103 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
104 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
106 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
107 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
108 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
109 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
110 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
111 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
112 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
113 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
114 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
115 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
116 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
117 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
118 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
119 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
120 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
121 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
122 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
123 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
124 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
125 3300036459 Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
126 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
127 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
128 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
129 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
130 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
131 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
132 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
133 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
134 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
135 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
136 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
137 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
138 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
139 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
140 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
141 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
142 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
143 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
144 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
145 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
146 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
147 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
148 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
149 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
150 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
151 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
152 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
153 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
154 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
155 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
156 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
157 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
158 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
159 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
160 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
161 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
162 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
163 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
164 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
165 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
166 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
167 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
168 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
169 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
170 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
171 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
172 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
173 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
174 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
175 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
176 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
177 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
178 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
179 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
180 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
181 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
182 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
183 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
184 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
185 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
186 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
187 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
188 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
189 3300053162 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 endosphere Metagenome Endosphere
190 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
191 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.69
Metatranscriptomes 0.31
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.41
Nodule 0
Rhizoplane 10.19
Rhizosphere 78.7
Stem 0
Stem Tuber 0
Unclassified 13.89

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0081538_10010931 3300005981 Bacteria 7395
2 rootH2_10198421 3300003320 Bacteria 2482
3 rootH1_10245965 3300003323 Bacteria 2686
4 Ga0070683_100063620 3300005329 Bacteria 3432
5 Ga0070680_100298870 3300005336 Unclassified 1365
6 Ga0070682_100062095 3300005337 Unclassified 2366
7 Ga0070682_100094938 3300005337 Bacteria 1957
8 Ga0070691_10019548 3300005341 Bacteria 3127
9 Ga0070691_10167844 3300005341 Unclassified 1135
10 Ga0070674_100075533 3300005356 Bacteria 2394
11 Ga0070709_10099987 3300005434 Bacteria 1930
12 Ga0070709_10167549 3300005434 Bacteria 1532
13 Ga0070714_100047388 3300005435 Bacteria 3651
14 Ga0070714_100069084 3300005435 Bacteria 3050
15 Ga0070714_100183664 3300005435 Bacteria 1904
16 Ga0070713_100055124 3300005436 Bacteria 3302
17 Ga0070713_100064895 3300005436 Bacteria 3065
18 Ga0070713_100082875 3300005436 Bacteria 2740
19 Ga0070710_10014841 3300005437 Bacteria 3927
20 Ga0070710_10052136 3300005437 Bacteria 2300
21 Ga0070711_100105081 3300005439 Bacteria 2062
22 Ga0070700_100002250 3300005441 Bacteria 9826
23 Ga0070708_100050104 3300005445 Bacteria 3696
24 Ga0070681_10032312 3300005458 Bacteria 5251
25 Ga0070681_10138852 3300005458 Bacteria 2360
26 Ga0070706_100050439 3300005467 Bacteria 3841
27 Ga0070707_100030217 3300005468 Bacteria 5156
28 Ga0070707_100249234 3300005468 Bacteria 1728
29 Ga0070698_100101466 3300005471 Bacteria 2849
30 Ga0070699_100013462 3300005518 Bacteria 7044
31 Ga0070679_100009543 3300005530 Bacteria 9180
32 Ga0070679_100226902 3300005530 Bacteria 1828
33 Ga0070684_100042757 3300005535 Bacteria 3913
34 Ga0070684_100322199 3300005535 Bacteria 1420
35 Ga0068853_100345145 3300005539 Bacteria 1384
36 Ga0070695_100036011 3300005545 Bacteria 3113
37 Ga0070696_100217315 3300005546 Bacteria 1433
38 Ga0070665_100019974 3300005548 Bacteria 6728
39 Ga0070704_100100357 3300005549 Bacteria 2179
40 Ga0068856_100027963 3300005614 Bacteria 5502
41 Ga0068864_100013749 3300005618 Bacteria 6714
42 Ga0068861_100044195 3300005719 Bacteria 3348
43 Ga0068870_10133295 3300005840 Unclassified 1446
44 Ga0081455_10008681 3300005937 Bacteria 10527
45 Ga0081455_10015355 3300005937 Bacteria 7445
46 Ga0081540_1001546 3300005983 Bacteria 19724
47 Ga0081540_1086654 3300005983 Unclassified 1390
48 Ga0070717_10057903 3300006028 Bacteria 3203
49 Ga0070717_10065356 3300006028 Bacteria 3024
50 Ga0070717_10418136 3300006028 Bacteria 1206
51 Ga0075365_10018008 3300006038 Bacteria 4336
52 Ga0075365_10018387 3300006038 Bacteria 4296
53 Ga0075365_10073010 3300006038 Bacteria 2312
54 Ga0075368_10075351 3300006042 Unclassified 1368
55 Ga0075363_100012680 3300006048 Bacteria 4067
56 Ga0075364_10004653 3300006051 Bacteria 7914
57 Ga0075364_10145972 3300006051 Bacteria 1593
58 Ga0070716_100208210 3300006173 Bacteria 1305
59 Ga0070712_100000419 3300006175 Bacteria 24295
60 Ga0070712_100028781 3300006175 Bacteria 3719
61 Ga0070712_100050584 3300006175 Bacteria 2891
62 Ga0070712_100163199 3300006175 Bacteria 1722
63 Ga0070712_100171747 3300006175 Bacteria 1683
64 Ga0075362_10006867 3300006177 Bacteria 4264
65 Ga0075362_10060158 3300006177 Bacteria 1716
66 Ga0075367_10033311 3300006178 Bacteria 2968
67 Ga0075370_10011109 3300006353 Bacteria 4722
68 Ga0075428_100000462 3300006844 Bacteria 40839
69 Ga0075428_100007046 3300006844 Bacteria 12462
70 Ga0075428_100083876 3300006844 Bacteria 3477
71 Ga0075430_100174015 3300006846 Unclassified 1791
72 Ga0075430_100225233 3300006846 Bacteria 1555
73 Ga0075430_100238218 3300006846 Bacteria 1508
74 Ga0075431_100000202 3300006847 Bacteria 43757
75 Ga0075431_100049153 3300006847 Bacteria 4349
76 Ga0075431_100176618 3300006847 Bacteria 2193
77 Ga0075431_100370839 3300006847 Unclassified 1436
78 Ga0075433_10010622 3300006852 Bacteria 7403
79 Ga0075433_10288487 3300006852 Bacteria 1454
80 Ga0075434_100007058 3300006871 Bacteria 10369
81 Ga0075434_100194331 3300006871 Bacteria 2049
82 Ga0075429_100100788 3300006880 Bacteria 2521
83 Ga0075429_100292390 3300006880 Bacteria 1426
84 Ga0068865_100053177 3300006881 Bacteria 2809
85 Ga0068865_100101591 3300006881 Bacteria 2106
86 Ga0075436_100040246 3300006914 Bacteria 3226
87 Ga0075435_100000539 3300007076 Bacteria 23181
88 Ga0099795_10006027 3300007788 Bacteria 3274
89 Ga0099795_10030988 3300007788 Bacteria 1839
90 Ga0105240_10013025 3300009093 Bacteria 11451
91 Ga0105240_10305104 3300009093 Bacteria 1820
92 Ga0111539_10000369 3300009094 Bacteria 55645
93 Ga0111539_10003441 3300009094 Bacteria 20844
94 Ga0111539_10009723 3300009094 Bacteria 12139
95 Ga0111539_10253490 3300009094 Bacteria 2049
96 Ga0111539_10595699 3300009094 Unclassified 1287
97 Ga0105245_10019155 3300009098 Bacteria 5993
98 Ga0114129_10000329 3300009147 Bacteria 55412
99 Ga0114129_10047733 3300009147 Bacteria 6015
100 Ga0114129_10216089 3300009147 Bacteria 2589
101 Ga0114129_10375277 3300009147 Unclassified 1879
102 Ga0114129_10677768 3300009147 Bacteria 1328
103 Ga0105243_10416257 3300009148 Bacteria 1252
104 Ga0105241_10093221 3300009174 Bacteria 2379
105 Ga0105242_10154785 3300009176 Bacteria 2002
106 Ga0105248_10119555 3300009177 Bacteria 2972
107 Ga0105248_10203579 3300009177 Bacteria 2230
108 Ga0105237_10057861 3300009545 Bacteria 3879
109 Ga0105237_10190645 3300009545 Bacteria 2050
110 Ga0105238_10019087 3300009551 Bacteria 6985
111 Ga0099796_10039183 3300010159 Bacteria 1594
112 Ga0099796_10053696 3300010159 Unclassified 1406
113 Ga0105239_10060239 3300010375 Bacteria 4166
114 Ga0105246_10002127 3300011119 Bacteria 11937
115 Ga0157369_10146382 3300013105 Bacteria 2498
116 Ga0157369_10483741 3300013105 Bacteria 1281
117 Ga0157374_10069062 3300013296 Bacteria 3326
118 Ga0163162_10009211 3300013306 Bacteria 9607
119 Ga0157372_10020400 3300013307 Bacteria 7150
120 Ga0157375_10010983 3300013308 Bacteria 7987
121 Ga0157375_10107631 3300013308 Unclassified 2881
122 Ga0163163_10004131 3300014325 Bacteria 12364
123 Ga0157380_10451345 3300014326 Bacteria 1235
124 Ga0157377_10110848 3300014745 Bacteria 1649
125 Ga0157376_10037581 3300014969 Bacteria 3932
126 Ga0213875_10021438 3300021388 Unclassified 3095
127 Ga0207684_10023518 3300025910 Bacteria 5262
128 Ga0207684_10034410 3300025910 Bacteria 4305
129 Ga0207684_10065483 3300025910 Bacteria 3085
130 Ga0207684_10300794 3300025910 Bacteria 1383
131 Ga0207707_10001280 3300025912 Bacteria 23486
132 Ga0207707_10032564 3300025912 Bacteria 4562
133 Ga0207707_10286971 3300025912 Bacteria 1424
134 Ga0207671_10032746 3300025914 Bacteria 3867
135 Ga0207693_10004545 3300025915 Bacteria 11716
136 Ga0207693_10006978 3300025915 Bacteria 9328
137 Ga0207693_10013843 3300025915 Bacteria 6497
138 Ga0207693_10020148 3300025915 Bacteria 5306
139 Ga0207693_10025080 3300025915 Bacteria 4730
140 Ga0207660_10082527 3300025917 Bacteria 2365
141 Ga0207652_10310458 3300025921 Bacteria 1423
142 Ga0207646_10178378 3300025922 Bacteria 1918
143 Ga0207659_10307028 3300025926 Unclassified 1305
144 Ga0207687_10158139 3300025927 Unclassified 1736
145 Ga0207700_10091990 3300025928 Bacteria 2397
146 Ga0207700_10108639 3300025928 Bacteria 2228
147 Ga0207700_10161664 3300025928 Bacteria 1860
148 Ga0207700_10179371 3300025928 Unclassified 1772
149 Ga0207664_10008239 3300025929 Bacteria 7257
150 Ga0207664_10015486 3300025929 Bacteria 5536
151 Ga0207664_10095289 3300025929 Bacteria 2448
152 Ga0207664_10104554 3300025929 Bacteria 2345
153 Ga0207644_10078088 3300025931 Bacteria 2440
154 Ga0207709_10287491 3300025935 Bacteria 1217
155 Ga0207704_10015768 3300025938 Bacteria 3862
156 Ga0207704_10076744 3300025938 Bacteria 2142
157 Ga0207665_10154805 3300025939 Bacteria 1644
158 Ga0207661_10003502 3300025944 Bacteria 10903
159 Ga0207667_10207089 3300025949 Bacteria 2011
160 Ga0207677_10044176 3300026023 Unclassified 2967
161 Ga0207703_10097792 3300026035 Bacteria 2481
162 Ga0207703_10359232 3300026035 Unclassified 1343
163 Ga0207708_10039957 3300026075 Bacteria 3576
164 Ga0207708_10119146 3300026075 Bacteria 2056
165 Ga0207702_10014112 3300026078 Bacteria 6634
166 Ga0207702_10059492 3300026078 Bacteria 3254
167 Ga0207676_10091834 3300026095 Unclassified 2495
168 Ga0207674_10060916 3300026116 Bacteria 3815
169 Ga0207675_100064708 3300026118 Bacteria 3418
170 Ga0207675_100442309 3300026118 Bacteria 1287
171 Ga0207683_10264264 3300026121 Unclassified 1571
172 Ga0209813_10011978 3300027866 Bacteria 2279
173 Ga0207428_10005122 3300027907 Bacteria 12287
174 Ga0207428_10005590 3300027907 Bacteria 11692
175 Ga0207428_10098825 3300027907 Bacteria 2258
176 Ga0207428_10120335 3300027907 Bacteria 2014
177 Ga0207428_10139926 3300027907 Bacteria 1848
178 Ga0268266_10083635 3300028379 Bacteria 2786
179 Ga0307408_100031043 3300031548 Bacteria 3716
180 Ga0307508_10038864 3300031616 Bacteria 4276
181 Ga0307508_10347931 3300031616 Unclassified 1074
182 Ga0265314_10003340 3300031711 Bacteria 15623
183 Ga0307412_10265699 3300031911 Bacteria 1340
184 Ga0373926_0020067 3300035083 Bacteria 2307
185 Ga0373926_0045690 3300035083 Bacteria 1570
186 Ga0373926_0056101 3300035083 Bacteria 1429
187 Ga0373934_0023397 3300035086 Bacteria 2387
188 Ga0373951_0042472 3300035091 Unclassified 1100
189 Ga0373923_0068060 3300035111 Archaea 1524
190 Ga0373932_0003983 3300035112 Unclassified 3517
191 Ga0373932_0014708 3300035112 Bacteria 1972
192 Ga0373936_0064785 3300035113 Archaea 1498
193 Ga0373945_0054680 3300035116 Bacteria 1476
194 Ga0373960_0001344 3300035121 Bacteria 5417
195 Ga0373943_0044746 3300035170 Bacteria 2155
196 Ga0373946_0131098 3300035171 Unclassified 1153
197 Ga0373961_0016737 3300035241 Unclassified 1892
198 Ga0373931_0003413 3300035691 Bacteria 7131
199 Ga0373931_0014797 3300035691 Plasmid 3819
200 Ga0373931_0035885 3300035691 Bacteria 2581
201 Ga0373927_0017243 3300035695 Bacteria 4755
202 Ga0373933_0002234 3300035724 Bacteria 11050
203 Ga0373933_0020028 3300035724 Unclassified 3788
204 Ga0373933_0171813 3300035724 Bacteria 1379
205 Ga0373947_0023728 3300035725 Bacteria 3570
206 Ga0373947_0025511 3300035725 Bacteria 3448
207 Ga0373937_0059640 3300036401 Bacteria 3507
208 Ga0373937_0064061 3300036401 Bacteria 3381
209 Ga0373937_0180230 3300036401 Bacteria 1983
210 Ga0372808_001942 3300036459 Unclassified 2285
211 Ga0373925_0059392 3300037068 Unclassified 2869
212 Ga0373925_0066148 3300037068 Bacteria 2724
213 Ga0373925_0089512 3300037068 Unclassified 2351
214 Ga0373925_0251803 3300037068 Bacteria 1417
215 Ga0395900_0029737 3300037418 Bacteria 5606
216 Ga0395900_0220921 3300037418 Bacteria 1910
217 Ga0395898_0065284 3300037466 Bacteria 3528
218 Ga0436364_0775242 3300037853 Unclassified 1141
219 Ga0436364_1039708 3300037853 Bacteria 2465
220 Ga0436365_0870355 3300039437 Bacteria 1542
221 Ga0436365_1112347 3300039437 Unclassified 1229
222 Ga0436365_1708150 3300039437 Bacteria 4026
223 Ga0436361_0663564 3300039447 Bacteria 1387
224 Ga0436361_0999632 3300039447 Bacteria 1208
225 Ga0436363_1525081 3300039450 Bacteria 3433
226 Ga0436362_0832995 3300039453 Bacteria 12100
227 Ga0439464_0053958 3300042439 Bacteria 1167
228 Ga0495603_0093649 3300046455 Unclassified 1756
229 Ga0495603_0104194 3300046455 Bacteria 1656
230 Ga0495641_0139231 3300046461 Unclassified 1084
231 Ga0495650_0050959 3300046471 Bacteria 1708
232 Ga0495580_0022821 3300046472 Bacteria 4600
233 Ga0495580_0112648 3300046472 Bacteria 1889
234 Ga0495582_0026286 3300046473 Bacteria 3190
235 Ga0495639_0020823 3300046475 Bacteria 2867
236 Ga0495652_0088008 3300046529 Unclassified 2546
237 Ga0495640_0017901 3300046533 Bacteria 5267
238 Ga0495645_0055661 3300046543 Bacteria 2872
239 Ga0495611_0124999 3300046648 Bacteria 1200
240 Ga0495659_0021154 3300046664 Unclassified 2190
241 Ga0495623_0117826 3300046679 Bacteria 1603
242 Ga0495646_0095017 3300046680 Archaea 1716
243 Ga0495658_0123142 3300046683 Bacteria 1570
244 Ga0495624_0081367 3300046690 Unclassified 2006
245 Ga0495674_0227139 3300047319 Bacteria 1541
246 Ga0495684_0020925 3300047471 Bacteria 5040
247 Ga0495593_0012904 3300047673 Bacteria 4773
248 Ga0496100_0038013 3300048903 Bacteria 3047
249 Ga0496101_0006662 3300048904 Bacteria 7448
250 Ga0496102_0000726 3300048905 Bacteria 32407
251 Ga0496102_0045784 3300048905 Bacteria 3972
252 Ga0496102_0092257 3300048905 Bacteria 2804
253 Ga0496103_0135746 3300048906 Unclassified 1572
254 Ga0496104_0006005 3300048907 Bacteria 10645
255 Ga0496104_0207813 3300048907 Bacteria 1869
256 Ga0496105_0008570 3300048908 Bacteria 7942
257 Ga0496105_0029328 3300048908 Bacteria 4503
258 Ga0496106_0064775 3300048909 Bacteria 2781
259 Ga0496107_0002537 3300048910 Bacteria 11897
260 Ga0496107_0009592 3300048910 Bacteria 6713
261 Ga0496107_0111259 3300048910 Bacteria 2013
262 Ga0496108_0036902 3300048911 Bacteria 4068
263 Ga0496108_0095990 3300048911 Bacteria 2525
264 Ga0496109_0055068 3300048912 Unclassified 3628
265 Ga0496109_0154947 3300048912 Bacteria 2146
266 Ga0496109_0400936 3300048912 Bacteria 1296
267 Ga0496110_0004631 3300048913 Bacteria 10686
268 Ga0496110_0024207 3300048913 Bacteria 5172
269 Ga0496111_0032777 3300048914 Bacteria 3704
270 Ga0496111_0035245 3300048914 Bacteria 3575
271 Ga0496112_0057535 3300048915 Bacteria 3827
272 Ga0496112_0084602 3300048915 Bacteria 3137
273 Ga0496112_0099892 3300048915 Bacteria 2872
274 Ga0496112_0118509 3300048915 Bacteria 2617
275 Ga0496113_0014754 3300048916 Bacteria 5344
276 Ga0496113_0021260 3300048916 Bacteria 4574
277 Ga0496114_0049503 3300048917 Bacteria 3497
278 Ga0496115_0000733 3300048918 Bacteria 24248
279 Ga0496115_0060883 3300048918 Bacteria 3042
280 Ga0496115_0103951 3300048918 Bacteria 2331
281 Ga0501070_0142508 3300049586 Bacteria 1979
282 Ga0501080_0010132 3300049742 Bacteria 8620
283 Ga0501035_0295317 3300049822 Bacteria 1367
284 nmdc:mga03683_29754_c1 3300050489 Bacteria 2180
285 nmdc:mga03n38_5486_c1 3300050490 Bacteria 4324
286 nmdc:mga0yw44_2617_c1 3300050492 Bacteria 7742
287 nmdc:mga0yw44_30654_c1 3300050492 Bacteria 3119
288 nmdc:mga0yw44_604_c1 3300050492 Bacteria 12988
289 nmdc:mga06z11_102272_c1 3300050494 Unclassified 1574
290 nmdc:mga06z11_8445_c1 3300050494 Bacteria 4294
291 nmdc:mga04h51_29471_c1 3300050495 Bacteria 1720
292 nmdc:mga07m45_4247_c1 3300050496 Bacteria 4740
293 nmdc:mga05p37_22236_c1 3300050507 Bacteria 7689
294 nmdc:mga05p37_296523_c1 3300050507 Bacteria 1923
295 nmdc:mga05p37_435439_c1 3300050507 Unclassified 1522
296 nmdc:mga05p37_436233_c1 3300050507 Unclassified 1520
297 nmdc:mga05p37_70730_c1 3300050507 Bacteria 4292
298 nmdc:mga09592_112269_c1 3300050508 Bacteria 2338
299 nmdc:mga09592_295766_c1 3300050508 Bacteria 1404
300 nmdc:mga09592_34112_c1 3300050508 Bacteria 4254
301 nmdc:mga09592_73352_c1 3300050508 Bacteria 2908
302 nmdc:mga0qj67_31120_c1 3300050509 Bacteria 4156
303 nmdc:mga0qj67_7407_c1 3300050509 Bacteria 8112
304 nmdc:mga06r32_136980_c1 3300050510 Bacteria 2423
305 nmdc:mga06r32_161455_c1 3300050510 Bacteria 2223
306 nmdc:mga06r32_4_c1 3300050510 Bacteria 144637
307 nmdc:mga08y16_155834_c1 3300050511 Bacteria 2374
308 nmdc:mga08y16_192490_c1 3300050511 Bacteria 2115
309 nmdc:mga08y16_344843_c1 3300050511 Unclassified 1531
310 nmdc:mga08y16_4735_c1 3300050511 Bacteria 14193
311 nmdc:mga08y16_50101_c1 3300050511 Bacteria 4370
312 nmdc:mga0n895_135816_c1 3300050512 Bacteria 2486
313 nmdc:mga0n895_579530_c1 3300050512 Bacteria 1126
314 nmdc:mga0n895_61533_c1 3300050512 Unclassified 3707
315 nmdc:mga0rr50_1588_c1 3300050513 Bacteria 12528
316 nmdc:mga0rr50_19017_c1 3300050513 Bacteria 4626
317 nmdc:mga08x19_148556_c1 3300050514 Unclassified 1586
318 nmdc:mga0a205_10141_c1 3300050515 Bacteria 8650
319 nmdc:mga0a205_122382_c1 3300050515 Bacteria 2501
320 Ga0495601_0131534 3300053077 Bacteria 1630
321 Ga0500635_0033142 3300053080 Bacteria 1683
322 Ga0500638_005887 3300053162 Bacteria 4953
323 Ga0500637_0011221 3300053178 Bacteria 4624
324 Ga0466962_0150945 3300061719 Unclassified 1127
325 Ga0081538_10010931
326 rootH2_10198421
327 rootH1_10245965
328 Ga0070683_100063620
329 Ga0070680_100298870
330 Ga0070682_100062095
331 Ga0070682_100094938
332 Ga0070691_10019548
333 Ga0070691_10167844
334 Ga0070674_100075533
335 Ga0070709_10099987
336 Ga0070709_10167549
337 Ga0070714_100047388
338 Ga0070714_100069084
339 Ga0070714_100183664
340 Ga0070713_100055124
341 Ga0070713_100064895
342 Ga0070713_100082875
343 Ga0070710_10014841
344 Ga0070710_10052136
345 Ga0070711_100105081
346 Ga0070700_100002250
347 Ga0070708_100050104
348 Ga0070681_10032312
349 Ga0070681_10138852
350 Ga0070706_100050439
351 Ga0070707_100030217
352 Ga0070707_100249234
353 Ga0070698_100101466
354 Ga0070699_100013462
355 Ga0070679_100009543
356 Ga0070679_100226902
357 Ga0070684_100042757
358 Ga0070684_100322199
359 Ga0068853_100345145
360 Ga0070695_100036011
361 Ga0070696_100217315
362 Ga0070665_100019974
363 Ga0070704_100100357
364 Ga0068856_100027963
365 Ga0068864_100013749
366 Ga0068861_100044195
367 Ga0068870_10133295
368 Ga0081455_10008681
369 Ga0081455_10015355
370 Ga0081540_1001546
371 Ga0081540_1086654
372 Ga0070717_10057903
373 Ga0070717_10065356
374 Ga0070717_10418136
375 Ga0075365_10018008
376 Ga0075365_10018387
377 Ga0075365_10073010
378 Ga0075368_10075351
379 Ga0075363_100012680
380 Ga0075364_10004653
381 Ga0075364_10145972
382 Ga0070716_100208210
383 Ga0070712_100000419
384 Ga0070712_100028781
385 Ga0070712_100050584
386 Ga0070712_100163199
387 Ga0070712_100171747
388 Ga0075362_10006867
389 Ga0075362_10060158
390 Ga0075367_10033311
391 Ga0075370_10011109
392 Ga0075428_100000462
393 Ga0075428_100007046
394 Ga0075428_100083876
395 Ga0075430_100174015
396 Ga0075430_100225233
397 Ga0075430_100238218
398 Ga0075431_100000202
399 Ga0075431_100049153
400 Ga0075431_100176618
401 Ga0075431_100370839
402 Ga0075433_10010622
403 Ga0075433_10288487
404 Ga0075434_100007058
405 Ga0075434_100194331
406 Ga0075429_100100788
407 Ga0075429_100292390
408 Ga0068865_100053177
409 Ga0068865_100101591
410 Ga0075436_100040246
411 Ga0075435_100000539
412 Ga0099795_10006027
413 Ga0099795_10030988
414 Ga0105240_10013025
415 Ga0105240_10305104
416 Ga0111539_10000369
417 Ga0111539_10003441
418 Ga0111539_10009723
419 Ga0111539_10253490
420 Ga0111539_10595699
421 Ga0105245_10019155
422 Ga0114129_10000329
423 Ga0114129_10047733
424 Ga0114129_10216089
425 Ga0114129_10375277
426 Ga0114129_10677768
427 Ga0105243_10416257
428 Ga0105241_10093221
429 Ga0105242_10154785
430 Ga0105248_10119555
431 Ga0105248_10203579
432 Ga0105237_10057861
433 Ga0105237_10190645
434 Ga0105238_10019087
435 Ga0099796_10039183
436 Ga0099796_10053696
437 Ga0105239_10060239
438 Ga0105246_10002127
439 Ga0157369_10146382
440 Ga0157369_10483741
441 Ga0157374_10069062
442 Ga0163162_10009211
443 Ga0157372_10020400
444 Ga0157375_10010983
445 Ga0157375_10107631
446 Ga0163163_10004131
447 Ga0157380_10451345
448 Ga0157377_10110848
449 Ga0157376_10037581
450 Ga0213875_10021438
451 Ga0207684_10023518
452 Ga0207684_10034410
453 Ga0207684_10065483
454 Ga0207684_10300794
455 Ga0207707_10001280
456 Ga0207707_10032564
457 Ga0207707_10286971
458 Ga0207671_10032746
459 Ga0207693_10004545
460 Ga0207693_10006978
461 Ga0207693_10013843
462 Ga0207693_10020148
463 Ga0207693_10025080
464 Ga0207660_10082527
465 Ga0207652_10310458
466 Ga0207646_10178378
467 Ga0207659_10307028
468 Ga0207687_10158139
469 Ga0207700_10091990
470 Ga0207700_10108639
471 Ga0207700_10161664
472 Ga0207700_10179371
473 Ga0207664_10008239
474 Ga0207664_10015486
475 Ga0207664_10095289
476 Ga0207664_10104554
477 Ga0207644_10078088
478 Ga0207709_10287491
479 Ga0207704_10015768
480 Ga0207704_10076744
481 Ga0207665_10154805
482 Ga0207661_10003502
483 Ga0207667_10207089
484 Ga0207677_10044176
485 Ga0207703_10097792
486 Ga0207703_10359232
487 Ga0207708_10039957
488 Ga0207708_10119146
489 Ga0207702_10014112
490 Ga0207702_10059492
491 Ga0207676_10091834
492 Ga0207674_10060916
493 Ga0207675_100064708
494 Ga0207675_100442309
495 Ga0207683_10264264
496 Ga0209813_10011978
497 Ga0207428_10005122
498 Ga0207428_10005590
499 Ga0207428_10098825
500 Ga0207428_10120335
501 Ga0207428_10139926
502 Ga0268266_10083635
503 Ga0307408_100031043
504 Ga0307508_10038864
505 Ga0307508_10347931
506 Ga0265314_10003340
507 Ga0307412_10265699
508 Ga0373926_0020067
509 Ga0373926_0045690
510 Ga0373926_0056101
511 Ga0373934_0023397
512 Ga0373951_0042472
513 Ga0373923_0068060
514 Ga0373932_0003983
515 Ga0373932_0014708
516 Ga0373936_0064785
517 Ga0373945_0054680
518 Ga0373960_0001344
519 Ga0373943_0044746
520 Ga0373946_0131098
521 Ga0373961_0016737
522 Ga0373931_0003413
523 Ga0373931_0014797
524 Ga0373931_0035885
525 Ga0373927_0017243
526 Ga0373933_0002234
527 Ga0373933_0020028
528 Ga0373933_0171813
529 Ga0373947_0023728
530 Ga0373947_0025511
531 Ga0373937_0059640
532 Ga0373937_0064061
533 Ga0373937_0180230
534 Ga0372808_001942
535 Ga0373925_0059392
536 Ga0373925_0066148
537 Ga0373925_0089512
538 Ga0373925_0251803
539 Ga0395900_0029737
540 Ga0395900_0220921
541 Ga0395898_0065284
542 Ga0436364_0775242
543 Ga0436364_1039708
544 Ga0436365_0870355
545 Ga0436365_1112347
546 Ga0436365_1708150
547 Ga0436361_0663564
548 Ga0436361_0999632
549 Ga0436363_1525081
550 Ga0436362_0832995
551 Ga0439464_0053958
552 Ga0495603_0093649
553 Ga0495603_0104194
554 Ga0495641_0139231
555 Ga0495650_0050959
556 Ga0495580_0022821
557 Ga0495580_0112648
558 Ga0495582_0026286
559 Ga0495639_0020823
560 Ga0495652_0088008
561 Ga0495640_0017901
562 Ga0495645_0055661
563 Ga0495611_0124999
564 Ga0495659_0021154
565 Ga0495623_0117826
566 Ga0495646_0095017
567 Ga0495658_0123142
568 Ga0495624_0081367
569 Ga0495674_0227139
570 Ga0495684_0020925
571 Ga0495593_0012904
572 Ga0496100_0038013
573 Ga0496101_0006662
574 Ga0496102_0000726
575 Ga0496102_0045784
576 Ga0496102_0092257
577 Ga0496103_0135746
578 Ga0496104_0006005
579 Ga0496104_0207813
580 Ga0496105_0008570
581 Ga0496105_0029328
582 Ga0496106_0064775
583 Ga0496107_0002537
584 Ga0496107_0009592
585 Ga0496107_0111259
586 Ga0496108_0036902
587 Ga0496108_0095990
588 Ga0496109_0055068
589 Ga0496109_0154947
590 Ga0496109_0400936
591 Ga0496110_0004631
592 Ga0496110_0024207
593 Ga0496111_0032777
594 Ga0496111_0035245
595 Ga0496112_0057535
596 Ga0496112_0084602
597 Ga0496112_0099892
598 Ga0496112_0118509
599 Ga0496113_0014754
600 Ga0496113_0021260
601 Ga0496114_0049503
602 Ga0496115_0000733
603 Ga0496115_0060883
604 Ga0496115_0103951
605 Ga0501070_0142508
606 Ga0501080_0010132
607 Ga0501035_0295317
608 nmdc:mga03683_29754_c1
609 nmdc:mga03n38_5486_c1
610 nmdc:mga0yw44_2617_c1
611 nmdc:mga0yw44_30654_c1
612 nmdc:mga0yw44_604_c1
613 nmdc:mga06z11_102272_c1
614 nmdc:mga06z11_8445_c1
615 nmdc:mga04h51_29471_c1
616 nmdc:mga07m45_4247_c1
617 nmdc:mga05p37_22236_c1
618 nmdc:mga05p37_296523_c1
619 nmdc:mga05p37_435439_c1
620 nmdc:mga05p37_436233_c1
621 nmdc:mga05p37_70730_c1
622 nmdc:mga09592_112269_c1
623 nmdc:mga09592_295766_c1
624 nmdc:mga09592_34112_c1
625 nmdc:mga09592_73352_c1
626 nmdc:mga0qj67_31120_c1
627 nmdc:mga0qj67_7407_c1
628 nmdc:mga06r32_136980_c1
629 nmdc:mga06r32_161455_c1
630 nmdc:mga06r32_4_c1
631 nmdc:mga08y16_155834_c1
632 nmdc:mga08y16_192490_c1
633 nmdc:mga08y16_344843_c1
634 nmdc:mga08y16_4735_c1
635 nmdc:mga08y16_50101_c1
636 nmdc:mga0n895_135816_c1
637 nmdc:mga0n895_579530_c1
638 nmdc:mga0n895_61533_c1
639 nmdc:mga0rr50_1588_c1
640 nmdc:mga0rr50_19017_c1
641 nmdc:mga08x19_148556_c1
642 nmdc:mga0a205_10141_c1
643 nmdc:mga0a205_122382_c1
644 Ga0495601_0131534
645 Ga0500635_0033142
646 Ga0500638_005887
647 Ga0500637_0011221
648 Ga0466962_0150945

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02615

Ldh_2

Malate/L-lactate dehydrogenase

8

316

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
1x0a-assembly1.cif.gz_A crystal structure of type ii malate/lactate dehydrogenase from thermus thermophilus hb8 0.8936 6 331
3uoe-assembly1.cif.gz_A the crystal structure of dehydrogenase from sinorhizobium meliloti 0.8896 3 328
4h8a-assembly1.cif.gz_A crystal structure of ureidoglycolate dehydrogenase in binary complex with nadh 0.8883 6 325
3i0p-assembly1.cif.gz_A-2 crystal structure of malate dehydrogenase from entamoeba histolytica 0.8845 4 332
1xrh-assembly3.cif.gz_E crystal structure of ureidoglycolate dehydrogenase from escherichia coli 0.8824 6 325
ID Description Score Start End Superfamily
3uoeA03 Alpha Beta;2-Layer Sandwich;Wheat Germ Agglutinin (Isolectin 2); domain 1;Hypothetical oxidoreductase yiak; domain 3 0.9595 186 224 3.30.60.50
1wtjA03 Alpha Beta;2-Layer Sandwich;Wheat Germ Agglutinin (Isolectin 2); domain 1;Hypothetical oxidoreductase yiak; domain 3 0.9554 179 225 3.30.60.50
af_P77555_4_66_1.10.1530.10 Mainly Alpha;Orthogonal Bundle;Hypothetical Oxidoreductase Yiak; Chain: A, domain 1;Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.9401 9 59 1.10.1530.10
af_Q9VP68_93_150_1.10.1530.10 Mainly Alpha;Orthogonal Bundle;Hypothetical Oxidoreductase Yiak; Chain: A, domain 1;Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.9329 8 55 1.10.1530.10
1v9nA01 Mainly Alpha;Orthogonal Bundle;Hypothetical Oxidoreductase Yiak; Chain: A, domain 1;Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.9291 5 56 1.10.1530.10
ID Description Score Start End GO Terms
AF-A0A7Y2EEH8-F1-model_v4 Ldh family oxidoreductase 0.9824 6 244 GO:0016491
AF-A0A537RGW3-F1-model_v4 Ldh family oxidoreductase 0.977 40 328 GO:0016491
AF-A0A3N5NAC3-F1-model_v4 Ldh family oxidoreductase 0.9651 1 324 GO:0016491
AF-A0A7S2SG18-F1-model_v4 Uncharacterized protein 0.9625 127 239 GO:0016491
AF-A0A381XQB8-F1-model_v4 Uncharacterized protein 0.9561 5 328 GO:0016491

Map