F405647

General Info

Members Datasets Scaffolds Average Seq Length
320 248 640 320

Family's Representative Sequence

Representative Sequence 3300042002|Ga0439442_003232|Ga0439442_003232_637_1590
Length 317
Sequence MEMSDSVDFLPGKLDRSAAFYVAGHRGLVGSAIWGHLQSEGFQNLVGRSSAELDLKNRDAVFAFFAQEKPLYVVLAAAKVGGILANSTFPVDFLSENLRIQVNVLDAAREHGVERLLFLGSSCIYPKFAEQPIREESLLTYAIAKIAGIMQIQAVRRQYGLPWISAMPTNLYGPGDNFSPTGSHVLPALIRRYDEALRSGATSVTNWGTGTPRREFLHVDDMAAACLHLLENYDGPLQVNVGTGSDVSIKELASVVADAVGYEGTIAWDESKPDGTPQKLLDVSRLAKAGWTASITLSEGVRRTVEWYRANAAHLRG

Samples

Sample ID Description Type Environment
1 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
2 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
14 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
17 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
18 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
22 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
23 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
24 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
25 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
26 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
31 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
32 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
33 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
35 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
39 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
40 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
41 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
42 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
43 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
44 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
62 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
63 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
64 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
65 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
66 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
67 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
68 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
69 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
70 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
71 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
72 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
73 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
74 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
75 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
76 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
77 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
78 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
79 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
80 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
81 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
82 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
83 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
84 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
85 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
86 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
87 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
88 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
89 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
90 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
91 3300042145 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0430D_E14_080116_2581 Metagenome Rhizosphere
92 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
93 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
94 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
95 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
96 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
97 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
98 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
99 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
100 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
101 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
102 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
103 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
104 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
105 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
106 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
107 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
108 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
109 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
110 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
111 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
112 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
113 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
114 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
115 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
116 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
117 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
118 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
119 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
120 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
121 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
122 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
123 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
124 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
125 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
126 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
127 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
128 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
129 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
130 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
131 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
132 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
133 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
134 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
135 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
136 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
137 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
138 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
139 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
140 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
141 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
142 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
143 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
144 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
145 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
146 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
147 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
148 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
149 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
150 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
151 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
152 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
153 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
154 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
155 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
156 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
157 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
158 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
159 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
160 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
161 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
162 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
163 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
164 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
165 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
166 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
167 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
168 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
169 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
170 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
171 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
172 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
173 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
174 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
175 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
176 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
177 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
178 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
179 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
180 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
181 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
182 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
183 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
184 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
185 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
186 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
187 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
188 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
189 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
190 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
191 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
192 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
193 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
194 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
195 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
196 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
197 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
198 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
199 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
200 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
201 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
202 2643221615 Nocardioides sp. Root224 Isolate Unclassified
203 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
204 2738543028 Mycobacterium sp. YR782 Isolate Unclassified
205 2738543034 Rhodococcus sp. OK269 Isolate Unclassified
206 2739367653 Kocuria sp. OV113 Isolate Unclassified
207 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
208 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
209 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
210 2808606371 Arthrobacter sp. SLBN-53 Isolate Unclassified
211 2811994871 Arthrobacter sp. SLBN-179 Isolate Unclassified
212 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
213 2816332305 Kocuria rhizophila FDAARGOS_302 Isolate Rhizosphere
214 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
215 2818991469 Terrabacter lapilli 3265 Isolate Rhizosphere
216 2839986021 Cellulosimicrobium cellulans JZ5 Isolate Unclassified
217 2852635781 Streptomyces sp. AK010 Isolate Rhizosphere
218 2855730933 Achromobacter sp. HZ28 Isolate Nodule
219 2855767633 Achromobacter sp. HZ34 Isolate Nodule
220 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
221 2857727296 Kocuria sp. R-72562 Isolate Unclassified
222 2863404153 Streptomyces scabiei SAI-025 (Annotation) (version 2) Isolate Unclassified
223 2881412998 Achromobacter aloeverae AVA-1 Isolate Unclassified
224 2902799365 Mycolicibacterium sp. P1-5 Isolate Unclassified
225 2902810491 Mycolicibacterium sp. P9-22 Isolate Unclassified
226 2904497146 Arthrobacter sp. 1276 Isolate Rhizosphere
227 2904501621 Curtobacterium sp. 1909 Isolate Unclassified
228 2904770941 Rhodococcus fascians 1339 Isolate Rhizosphere
229 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
230 2919391150 Arthrobacter ipis 2973 Isolate Unclassified
231 2920879853 Kocuria salina CV6 Isolate Unclassified
232 2929212328 Mycolicibacterium sp. R-73050 Hybrid assembly Isolate Unclassified
233 2939582691 Mycolicibacterium sp. 624 Isolate Rhizosphere
234 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
235 2939660829 Mycetocola sp. 2940 Isolate Rhizosphere
236 2945920336 Pseudarthrobacter siccitolerans W1I3 Isolate Rhizosphere
237 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere
238 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
239 2946037020 Arthrobacter sp. W4I7 Isolate Rhizosphere
240 2946059875 Arthrobacter sp. SLBN-112 Isolate Rhizosphere
241 2956939328 Lolliginicoccus suaedae LNNU 331112 Isolate Rhizosphere
242 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
243 2977228692 Microbacterium sp. SORGH_AS 421 Isolate Unclassified
244 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
245 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
246 2984592036 Aeromicrobium sp. SORGH_AS981 Isolate Aerial Root
247 8004021418 Arthrobacter sp. SDTb3-6 Isolate Rhizosphere
248 8054107350 Arthrobacter rhizosphaerae CCNWLXL 1-35 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.75
Metatranscriptomes 0.31
Isolates 15.94

Biome Distribution

Category Percentage (%)
Aerial Root 0.94
Bulb 0
Endosphere 6.88
Nodule 0.62
Rhizoplane 8.12
Rhizosphere 70.62
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0439442_003232 3300042002 Bacteria 3223
2 JGI24751J29686_10002244 3300002459 Bacteria 3912
3 rootL2_10037346 3300003322 Bacteria 11078
4 Ga0006562J51391_1016623 3300003578 Bacteria 5462
5 Ga0070658_10000370 3300005327 Bacteria 39203
6 Ga0070658_10081913 3300005327 Bacteria 2651
7 Ga0070683_100110947 3300005329 Bacteria 2587
8 Ga0070670_100067058 3300005331 Bacteria 3080
9 Ga0070682_100084743 3300005337 Bacteria 2060
10 Ga0070660_100006078 3300005339 Bacteria 8347
11 Ga0070713_100442237 3300005436 Bacteria 1220
12 Ga0070707_100240232 3300005468 Bacteria 1763
13 Ga0070679_100447214 3300005530 Bacteria 1237
14 Ga0070684_100034584 3300005535 Bacteria 4321
15 Ga0068853_100074287 3300005539 Bacteria 2966
16 Ga0068853_100379934 3300005539 Bacteria 1319
17 Ga0070665_100000996 3300005548 Bacteria 35909
18 Ga0070665_100007768 3300005548 Bacteria 10892
19 Ga0068855_100078255 3300005563 Bacteria 3836
20 Ga0070702_100082209 3300005615 Bacteria 1932
21 Ga0068859_100029109 3300005617 Bacteria 5543
22 Ga0068864_100053279 3300005618 Bacteria 3489
23 Ga0068864_100063078 3300005618 Bacteria 3212
24 Ga0068863_100001133 3300005841 Bacteria 26626
25 Ga0081455_10000136 3300005937 Bacteria 85921
26 Ga0070717_10219687 3300006028 Bacteria 1670
27 Ga0075368_10027015 3300006042 Bacteria 2211
28 Ga0075363_100000033 3300006048 Bacteria 26948
29 Ga0075363_100091435 3300006048 Bacteria 1675
30 Ga0075364_10004005 3300006051 Bacteria 8461
31 Ga0075364_10026016 3300006051 Bacteria 3730
32 Ga0075370_10001825 3300006353 Bacteria 9524
33 Ga0075370_10047063 3300006353 Bacteria 2442
34 Ga0075428_100053271 3300006844 Bacteria 4433
35 Ga0075431_100211430 3300006847 Bacteria 1981
36 Ga0075429_100001794 3300006880 Bacteria 17788
37 Ga0097620_100029110 3300006931 Bacteria 5543
38 Ga0105244_10017902 3300009036 Bacteria 3990
39 Ga0105247_10017445 3300009101 Bacteria 4310
40 Ga0114129_10453349 3300009147 Bacteria 1682
41 Ga0114129_10485019 3300009147 Bacteria 1617
42 Ga0105248_10045209 3300009177 Bacteria 4938
43 Ga0105248_10154472 3300009177 Bacteria 2589
44 Ga0105237_10011668 3300009545 Bacteria 9298
45 Ga0157370_10001330 3300013104 Bacteria 30668
46 Ga0157369_10115088 3300013105 Bacteria 2856
47 Ga0163162_10541614 3300013306 Bacteria 1293
48 Ga0157372_10155568 3300013307 Bacteria 2640
49 Ga0157375_10113211 3300013308 Bacteria 2814
50 Ga0163163_10001654 3300014325 Bacteria 18775
51 Ga0163163_10017451 3300014325 Bacteria 6694
52 Ga0163163_10662238 3300014325 Bacteria 1107
53 Ga0209759_1013396 3300025256 Bacteria 2221
54 Ga0209025_1000003 3300025294 Bacteria 1366495
55 Ga0207655_1006279 3300025728 Bacteria 7903
56 Ga0207710_10002581 3300025900 Bacteria 8363
57 Ga0207705_10000811 3300025909 Bacteria 25635
58 Ga0207705_10002710 3300025909 Bacteria 13557
59 Ga0207671_10011907 3300025914 Bacteria 7033
60 Ga0207657_10000774 3300025919 Bacteria 33927
61 Ga0207650_10039028 3300025925 Bacteria 3470
62 Ga0207687_10263689 3300025927 Bacteria 1374
63 Ga0207700_10386967 3300025928 Bacteria 1224
64 Ga0207665_10032234 3300025939 Bacteria 3470
65 Ga0207711_10179033 3300025941 Bacteria 1927
66 Ga0207711_10182708 3300025941 Bacteria 1908
67 Ga0207667_10033638 3300025949 Bacteria 5510
68 Ga0207658_10005517 3300025986 Bacteria 8669
69 Ga0207639_10081159 3300026041 Bacteria 2568
70 Ga0207641_10010091 3300026088 Bacteria 7766
71 Ga0207641_10012986 3300026088 Bacteria 6834
72 Ga0207676_10015836 3300026095 Bacteria 5452
73 Ga0268266_10001219 3300028379 Bacteria 31613
74 Ga0268266_10010373 3300028379 Bacteria 8145
75 Ga0268264_10423561 3300028381 Bacteria 1284
76 Ga0316576_10045656 3300031727 Bacteria 3169
77 Ga0307405_10028871 3300031731 Bacteria 3236
78 Ga0307405_10071313 3300031731 Bacteria 2235
79 Ga0307410_10000981 3300031852 Bacteria 12297
80 Ga0307410_10135759 3300031852 Bacteria 1813
81 Ga0307406_10021433 3300031901 Bacteria 3822
82 Ga0307407_10002895 3300031903 Bacteria 6864
83 Ga0307412_10125628 3300031911 Bacteria 1855
84 Ga0307409_100001771 3300031995 Bacteria 10911
85 Ga0307409_100013481 3300031995 Bacteria 5263
86 Ga0307414_10085914 3300032004 Bacteria 2320
87 Ga0307414_10304281 3300032004 Bacteria 1350
88 Ga0307411_10048673 3300032005 Bacteria 2749
89 Ga0307415_100108746 3300032126 Bacteria 2052
90 Ga0316574_0054526 3300035398 Bacteria 2497
91 Ga0316584_0034137 3300036712 Bacteria 3771
92 Ga0395900_0417609 3300037418 Bacteria 1303
93 Ga0395898_0002334 3300037466 Bacteria 22639
94 Ga0395898_0071748 3300037466 Bacteria 3346
95 Ga0395898_0426390 3300037466 Bacteria 1264
96 Ga0395901_0396639 3300038443 Bacteria 1418
97 Ga0439436_0036382 3300041404 Bacteria 1420
98 Ga0439438_000639 3300041405 Bacteria 15753
99 Ga0439439_0001587 3300041406 Bacteria 4583
100 Ga0439439_0002670 3300041406 Bacteria 3821
101 Ga0439447_030311 3300041407 Bacteria 1364
102 Ga0439466_0005806 3300041411 Bacteria 4704
103 Ga0439466_0006360 3300041411 Bacteria 4495
104 Ga0439466_0020469 3300041411 Bacteria 2357
105 Ga0439465_0004920 3300041413 Bacteria 4294
106 Ga0439465_0008269 3300041413 Bacteria 3285
107 Ga0451791_0015129 3300041451 Bacteria 1049
108 Ga0439431_0003192 3300041997 Bacteria 3605
109 Ga0439431_0008036 3300041997 Bacteria 2364
110 Ga0439433_0000033 3300041999 Bacteria 17255
111 Ga0439442_000143 3300042002 Bacteria 17875
112 Ga0439442_006638 3300042002 Bacteria 2323
113 Ga0439442_008378 3300042002 Bacteria 2087
114 Ga0439432_000512 3300042006 Bacteria 14433
115 Ga0439449_0015575 3300042007 Bacteria 2858
116 Ga0439449_0094099 3300042007 Bacteria 1106
117 Ga0439452_000877 3300042010 Bacteria 13895
118 Ga0439457_000165 3300042014 Bacteria 17014
119 Ga0439457_000644 3300042014 Bacteria 10316
120 Ga0439457_001161 3300042014 Bacteria 7915
121 Ga0439462_0000065 3300042015 Bacteria 15578
122 Ga0450920_000268 3300042122 Bacteria 7805
123 Ga0450906_022731 3300042145 Bacteria 1118
124 Ga0450907_001569 3300042146 Bacteria 4858
125 Ga0450907_006194 3300042146 Bacteria 2002
126 Ga0450908_009989 3300042184 Bacteria 1756
127 Ga0450909_002580 3300042185 Bacteria 2568
128 Ga0439434_0000086 3300042435 Bacteria 23136
129 Ga0439434_0009795 3300042435 Bacteria 2819
130 Ga0450918_002615 3300042531 Bacteria 3400
131 Ga0450918_014737 3300042531 Bacteria 1358
132 Ga0466969_0000473 3300044656 Bacteria 22052
133 Ga0466972_0000561 3300044658 Bacteria 18133
134 Ga0466965_0109018 3300044683 Bacteria 1422
135 Ga0466966_0000212 3300044684 Bacteria 38899
136 Ga0466966_0034592 3300044684 Bacteria 3266
137 Ga0466961_0128360 3300044693 Bacteria 1589
138 Ga0466963_0033944 3300044694 Bacteria 3318
139 Ga0466963_0111206 3300044694 Bacteria 1881
140 Ga0466970_0007227 3300044765 Bacteria 5561
141 Ga0466960_0000462 3300044901 Bacteria 13932
142 Ga0466959_0009299 3300045049 Bacteria 6983
143 Ga0466959_0011143 3300045049 Bacteria 6452
144 Ga0466958_0160513 3300045836 Bacteria 1420
145 Ga0466967_0039835 3300045976 Bacteria 4042
146 Ga0466967_0046670 3300045976 Bacteria 3773
147 Ga0466967_0052250 3300045976 Bacteria 3586
148 Ga0466967_0057767 3300045976 Bacteria 3426
149 Ga0495592_0009672 3300046454 Bacteria 7256
150 Ga0495638_0001659 3300046460 Bacteria 19683
151 Ga0495651_0003723 3300046462 Bacteria 11682
152 Ga0495653_0008084 3300046463 Bacteria 8615
153 Ga0495580_0012516 3300046472 Bacteria 6504
154 Ga0495582_0099802 3300046473 Bacteria 1625
155 Ga0495662_0000503 3300046476 Bacteria 17777
156 Ga0495664_0012127 3300046477 Bacteria 4876
157 Ga0495608_0004287 3300046511 Bacteria 10215
158 Ga0495628_0014846 3300046516 Bacteria 6514
159 Ga0495630_0006365 3300046517 Bacteria 8392
160 Ga0495666_0000962 3300046526 Bacteria 13590
161 Ga0495652_0037117 3300046529 Bacteria 4229
162 Ga0495665_0000867 3300046531 Bacteria 15822
163 Ga0495640_0003625 3300046533 Bacteria 12396
164 Ga0495586_0004706 3300046535 Bacteria 7296
165 Ga0495587_0009280 3300046536 Bacteria 6310
166 Ga0495667_0209284 3300046559 Bacteria 1246
167 Ga0495668_0227563 3300046616 Bacteria 1021
168 Ga0495634_0024679 3300046642 Bacteria 4214
169 Ga0495611_0057189 3300046648 Bacteria 1767
170 Ga0495625_0046990 3300046660 Bacteria 3113
171 Ga0495635_0009620 3300046663 Bacteria 6756
172 Ga0495657_0035652 3300046675 Bacteria 3445
173 Ga0495599_0017027 3300046678 Bacteria 4515
174 Ga0495623_0121565 3300046679 Bacteria 1571
175 Ga0495646_0009230 3300046680 Bacteria 6258
176 Ga0495658_0200816 3300046683 Bacteria 1243
177 Ga0495613_0009016 3300046689 Bacteria 7399
178 Ga0495670_0024123 3300046691 Bacteria 3005
179 Ga0495649_0060219 3300046694 Bacteria 2043
180 Ga0495600_0006597 3300046809 Bacteria 7069
181 Ga0495581_0002358 3300047315 Bacteria 10656
182 Ga0495604_0003826 3300047317 Bacteria 11988
183 Ga0495674_0049044 3300047319 Bacteria 3733
184 Ga0495687_004462 3300047443 Bacteria 9435
185 Ga0495687_009734 3300047443 Bacteria 5340
186 Ga0495675_0014896 3300047444 Bacteria 4918
187 Ga0495684_0029238 3300047471 Bacteria 4229
188 Ga0495593_0018692 3300047673 Bacteria 3892
189 Ga0495602_0015427 3300048088 Bacteria 7710
190 Ga0495626_0092224 3300048091 Bacteria 1331
191 Ga0496100_0114940 3300048903 Bacteria 1876
192 Ga0496102_0000111 3300048905 Bacteria 117001
193 Ga0496102_0005824 3300048905 Bacteria 10483
194 Ga0496102_0131257 3300048905 Bacteria 2345
195 Ga0496102_0254475 3300048905 Bacteria 1656
196 Ga0496103_0000030 3300048906 Bacteria 211729
197 Ga0496104_0007656 3300048907 Bacteria 9563
198 Ga0496104_0052234 3300048907 Bacteria 3860
199 Ga0496104_0068153 3300048907 Bacteria 3381
200 Ga0496105_0319659 3300048908 Bacteria 1244
201 Ga0496106_0218906 3300048909 Bacteria 1518
202 Ga0496108_0021854 3300048911 Bacteria 5259
203 Ga0496108_0176466 3300048911 Bacteria 1850
204 Ga0496108_0177773 3300048911 Bacteria 1843
205 Ga0496110_0028871 3300048913 Bacteria 4768
206 Ga0496110_0054363 3300048913 Bacteria 3522
207 Ga0496111_0006731 3300048914 Bacteria 7483
208 Ga0496112_0009579 3300048915 Bacteria 8736
209 Ga0496113_0000625 3300048916 Bacteria 17778
210 Ga0496113_0210751 3300048916 Bacteria 1547
211 Ga0496114_0007100 3300048917 Bacteria 8835
212 Ga0496114_0009460 3300048917 Bacteria 7736
213 Ga0496114_0091763 3300048917 Bacteria 2580
214 Ga0496114_0289117 3300048917 Bacteria 1446
215 Ga0496115_0149594 3300048918 Bacteria 1927
216 Ga0496118_0008546 3300048921 Bacteria 10557
217 Ga0496120_0026471 3300048923 Bacteria 3581
218 Ga0496122_0000105 3300048925 Bacteria 194509
219 Ga0496123_0000075 3300048926 Bacteria 194499
220 Ga0496123_0049325 3300048926 Bacteria 2824
221 Ga0496124_0008968 3300048927 Bacteria 10352
222 Ga0496124_0013740 3300048927 Bacteria 7881
223 Ga0496124_0233376 3300048927 Bacteria 1373
224 Ga0496125_0000015 3300048928 Bacteria 516648
225 Ga0496125_0005377 3300048928 Bacteria 14283
226 Ga0496126_0001852 3300048929 Bacteria 30819
227 Ga0496126_0011880 3300048929 Bacteria 8955
228 Ga0501034_0068762 3300049571 Bacteria 3552
229 Ga0501034_0186552 3300049571 Bacteria 2037
230 Ga0501037_0033078 3300049573 Bacteria 3820
231 Ga0501038_0003960 3300049574 Bacteria 13757
232 Ga0501038_0034617 3300049574 Bacteria 4440
233 Ga0501038_0055995 3300049574 Bacteria 3387
234 Ga0501043_0063737 3300049579 Bacteria 2894
235 Ga0501047_0000127 3300049581 Bacteria 93760
236 Ga0501067_0002021 3300049583 Bacteria 11188
237 Ga0501069_0024733 3300049585 Bacteria 3277
238 Ga0501070_0010345 3300049586 Bacteria 7885
239 Ga0501070_0019188 3300049586 Bacteria 5734
240 Ga0501071_0061946 3300049587 Bacteria 2710
241 Ga0501072_0008027 3300049588 Bacteria 8012
242 Ga0501073_0002465 3300049589 Bacteria 13825
243 Ga0501073_0003474 3300049589 Bacteria 11826
244 Ga0501074_0001114 3300049590 Bacteria 17529
245 Ga0501074_0029024 3300049590 Bacteria 4007
246 Ga0501077_0004739 3300049593 Bacteria 8267
247 Ga0501079_0193416 3300049741 Bacteria 1588
248 Ga0501080_0004385 3300049742 Bacteria 12534
249 Ga0501083_0000004 3300049744 Bacteria 207886
250 Ga0501083_0004573 3300049744 Bacteria 9773
251 Ga0501044_0065372 3300049823 Bacteria 3709
252 nmdc:mga03683_14797_c1 3300050489 Bacteria 2895
253 nmdc:mga03n38_24674_c1 3300050490 Bacteria 2460
254 nmdc:mga00v17_9435_c1 3300050491 Bacteria 5281
255 nmdc:mga0yw44_15076_c1 3300050492 Bacteria 4127
256 nmdc:mga06z11_4303_c1 3300050494 Bacteria 5596
257 nmdc:mga07m45_26595_c1 3300050496 Bacteria 3181
258 nmdc:mga07m45_5496_c1 3300050496 Bacteria 6312
259 nmdc:mga09592_1557_c1 3300050508 Bacteria 18449
260 Ga0495601_0001958 3300053077 Bacteria 11511
261 Ga0495612_0018320 3300053078 Bacteria 2805
262 Ga0500610_0000272 3300053079 Bacteria 15730
263 Ga0495619_0008236 3300053085 Bacteria 6596
264 Ga0500556_0005151 3300053104 Bacteria 3697
265 Ga0500562_001323 3300053108 Bacteria 6115
266 Ga0500573_0000080 3300053140 Bacteria 46390
267 Ga0500573_0015761 3300053140 Bacteria 4287
268 Ga0500573_0029231 3300053140 Bacteria 3177
269 Ga0500616_0095839 3300053153 Bacteria 1460
270 2523383839 2523231044 Bacteria 6434991
271 2644090875 2643221615 Bacteria 5487866
272 2644320678 2643221657 Bacteria 5490246
273 2739329866 2738543028 Bacteria 6917070
274 2739364472 2738543034 Bacteria 6084756
275 2739604404 2739367653 Bacteria 2780952
276 2774400722 2773857763 Bacteria 4180068
277 2785344441 2784746763 Bacteria 9783172
278 2808884555 2808606368 Bacteria 3174172
279 2808895442 2808606371 Bacteria 4251511
280 2812320051 2811994871 Bacteria 4497550
281 2812322133 2811994872 Bacteria 4121241
282 2817509972 2816332305 Bacteria 2697803
283 2819690812 2818991462 Bacteria 4320267
284 2819728469 2818991469 Bacteria 4644110
285 2839986672 2839986021 Bacteria 3685650
286 2852636648 2852635781 Bacteria 8251373
287 2855731116 2855730933 Bacteria 7047938
288 2855770283 2855767633 Bacteria 7049357
289 2857483666 2857481737 Bacteria 4761446
290 2857728836 2857727296 Bacteria 2745552
291 2863407664 2863404153 Bacteria 9672205
292 2881414504 2881412998 Bacteria 6492157
293 2902802906 2902799365 Bacteria 5419524
294 2902813813 2902810491 Bacteria 6794147
295 2904498814 2904497146 Bacteria 4731781
296 2904500696 2904497146 Bacteria 4731781
297 2904504729 2904501621 Bacteria 3401437
298 2904773966 2904770941 Bacteria 5580202
299 2905928221 2905926851 Bacteria 4423176
300 2919393685 2919391150 Bacteria 4884741
301 2920883531 2920879853 Bacteria 4216831
302 2929214149 2929212328 Bacteria 7708288
303 2939586732 2939582691 Bacteria 7088898
304 2939599128 2939598168 Bacteria 4687164
305 2939663373 2939660829 Bacteria 3784848
306 2945921950 2945920336 Bacteria 4501603
307 2946003822 2946003308 Bacteria 3857229
308 2946025037 2946024296 Bacteria 3508095
309 2946037812 2946037020 Bacteria 4900426
310 2946061613 2946059875 Bacteria 4386623
311 2956941610 2956939328 Bacteria 3474458
312 2974319189 2974315732 Bacteria 4602776
313 2974319218 2974315732 Bacteria 4602776
314 2977231718 2977228692 Bacteria 3450105
315 2977267031 2977264416 Bacteria 3750737
316 2984527416 2984523437 Bacteria 4508481
317 2984527445 2984523437 Bacteria 4508481
318 2984592380 2984592036 Bacteria 3670284
319 8004023836 8004021418 Bacteria 4313954
320 8054110827 8054107350 Bacteria 5022511
321 Ga0439442_003232
322 JGI24751J29686_10002244
323 rootL2_10037346
324 Ga0006562J51391_1016623
325 Ga0070658_10000370
326 Ga0070658_10081913
327 Ga0070683_100110947
328 Ga0070670_100067058
329 Ga0070682_100084743
330 Ga0070660_100006078
331 Ga0070713_100442237
332 Ga0070707_100240232
333 Ga0070679_100447214
334 Ga0070684_100034584
335 Ga0068853_100074287
336 Ga0068853_100379934
337 Ga0070665_100000996
338 Ga0070665_100007768
339 Ga0068855_100078255
340 Ga0070702_100082209
341 Ga0068859_100029109
342 Ga0068864_100053279
343 Ga0068864_100063078
344 Ga0068863_100001133
345 Ga0081455_10000136
346 Ga0070717_10219687
347 Ga0075368_10027015
348 Ga0075363_100000033
349 Ga0075363_100091435
350 Ga0075364_10004005
351 Ga0075364_10026016
352 Ga0075370_10001825
353 Ga0075370_10047063
354 Ga0075428_100053271
355 Ga0075431_100211430
356 Ga0075429_100001794
357 Ga0097620_100029110
358 Ga0105244_10017902
359 Ga0105247_10017445
360 Ga0114129_10453349
361 Ga0114129_10485019
362 Ga0105248_10045209
363 Ga0105248_10154472
364 Ga0105237_10011668
365 Ga0157370_10001330
366 Ga0157369_10115088
367 Ga0163162_10541614
368 Ga0157372_10155568
369 Ga0157375_10113211
370 Ga0163163_10001654
371 Ga0163163_10017451
372 Ga0163163_10662238
373 Ga0209759_1013396
374 Ga0209025_1000003
375 Ga0207655_1006279
376 Ga0207710_10002581
377 Ga0207705_10000811
378 Ga0207705_10002710
379 Ga0207671_10011907
380 Ga0207657_10000774
381 Ga0207650_10039028
382 Ga0207687_10263689
383 Ga0207700_10386967
384 Ga0207665_10032234
385 Ga0207711_10179033
386 Ga0207711_10182708
387 Ga0207667_10033638
388 Ga0207658_10005517
389 Ga0207639_10081159
390 Ga0207641_10010091
391 Ga0207641_10012986
392 Ga0207676_10015836
393 Ga0268266_10001219
394 Ga0268266_10010373
395 Ga0268264_10423561
396 Ga0316576_10045656
397 Ga0307405_10028871
398 Ga0307405_10071313
399 Ga0307410_10000981
400 Ga0307410_10135759
401 Ga0307406_10021433
402 Ga0307407_10002895
403 Ga0307412_10125628
404 Ga0307409_100001771
405 Ga0307409_100013481
406 Ga0307414_10085914
407 Ga0307414_10304281
408 Ga0307411_10048673
409 Ga0307415_100108746
410 Ga0316574_0054526
411 Ga0316584_0034137
412 Ga0395900_0417609
413 Ga0395898_0002334
414 Ga0395898_0071748
415 Ga0395898_0426390
416 Ga0395901_0396639
417 Ga0439436_0036382
418 Ga0439438_000639
419 Ga0439439_0001587
420 Ga0439439_0002670
421 Ga0439447_030311
422 Ga0439466_0005806
423 Ga0439466_0006360
424 Ga0439466_0020469
425 Ga0439465_0004920
426 Ga0439465_0008269
427 Ga0451791_0015129
428 Ga0439431_0003192
429 Ga0439431_0008036
430 Ga0439433_0000033
431 Ga0439442_000143
432 Ga0439442_006638
433 Ga0439442_008378
434 Ga0439432_000512
435 Ga0439449_0015575
436 Ga0439449_0094099
437 Ga0439452_000877
438 Ga0439457_000165
439 Ga0439457_000644
440 Ga0439457_001161
441 Ga0439462_0000065
442 Ga0450920_000268
443 Ga0450906_022731
444 Ga0450907_001569
445 Ga0450907_006194
446 Ga0450908_009989
447 Ga0450909_002580
448 Ga0439434_0000086
449 Ga0439434_0009795
450 Ga0450918_002615
451 Ga0450918_014737
452 Ga0466969_0000473
453 Ga0466972_0000561
454 Ga0466965_0109018
455 Ga0466966_0000212
456 Ga0466966_0034592
457 Ga0466961_0128360
458 Ga0466963_0033944
459 Ga0466963_0111206
460 Ga0466970_0007227
461 Ga0466960_0000462
462 Ga0466959_0009299
463 Ga0466959_0011143
464 Ga0466958_0160513
465 Ga0466967_0039835
466 Ga0466967_0046670
467 Ga0466967_0052250
468 Ga0466967_0057767
469 Ga0495592_0009672
470 Ga0495638_0001659
471 Ga0495651_0003723
472 Ga0495653_0008084
473 Ga0495580_0012516
474 Ga0495582_0099802
475 Ga0495662_0000503
476 Ga0495664_0012127
477 Ga0495608_0004287
478 Ga0495628_0014846
479 Ga0495630_0006365
480 Ga0495666_0000962
481 Ga0495652_0037117
482 Ga0495665_0000867
483 Ga0495640_0003625
484 Ga0495586_0004706
485 Ga0495587_0009280
486 Ga0495667_0209284
487 Ga0495668_0227563
488 Ga0495634_0024679
489 Ga0495611_0057189
490 Ga0495625_0046990
491 Ga0495635_0009620
492 Ga0495657_0035652
493 Ga0495599_0017027
494 Ga0495623_0121565
495 Ga0495646_0009230
496 Ga0495658_0200816
497 Ga0495613_0009016
498 Ga0495670_0024123
499 Ga0495649_0060219
500 Ga0495600_0006597
501 Ga0495581_0002358
502 Ga0495604_0003826
503 Ga0495674_0049044
504 Ga0495687_004462
505 Ga0495687_009734
506 Ga0495675_0014896
507 Ga0495684_0029238
508 Ga0495593_0018692
509 Ga0495602_0015427
510 Ga0495626_0092224
511 Ga0496100_0114940
512 Ga0496102_0000111
513 Ga0496102_0005824
514 Ga0496102_0131257
515 Ga0496102_0254475
516 Ga0496103_0000030
517 Ga0496104_0007656
518 Ga0496104_0052234
519 Ga0496104_0068153
520 Ga0496105_0319659
521 Ga0496106_0218906
522 Ga0496108_0021854
523 Ga0496108_0176466
524 Ga0496108_0177773
525 Ga0496110_0028871
526 Ga0496110_0054363
527 Ga0496111_0006731
528 Ga0496112_0009579
529 Ga0496113_0000625
530 Ga0496113_0210751
531 Ga0496114_0007100
532 Ga0496114_0009460
533 Ga0496114_0091763
534 Ga0496114_0289117
535 Ga0496115_0149594
536 Ga0496118_0008546
537 Ga0496120_0026471
538 Ga0496122_0000105
539 Ga0496123_0000075
540 Ga0496123_0049325
541 Ga0496124_0008968
542 Ga0496124_0013740
543 Ga0496124_0233376
544 Ga0496125_0000015
545 Ga0496125_0005377
546 Ga0496126_0001852
547 Ga0496126_0011880
548 Ga0501034_0068762
549 Ga0501034_0186552
550 Ga0501037_0033078
551 Ga0501038_0003960
552 Ga0501038_0034617
553 Ga0501038_0055995
554 Ga0501043_0063737
555 Ga0501047_0000127
556 Ga0501067_0002021
557 Ga0501069_0024733
558 Ga0501070_0010345
559 Ga0501070_0019188
560 Ga0501071_0061946
561 Ga0501072_0008027
562 Ga0501073_0002465
563 Ga0501073_0003474
564 Ga0501074_0001114
565 Ga0501074_0029024
566 Ga0501077_0004739
567 Ga0501079_0193416
568 Ga0501080_0004385
569 Ga0501083_0000004
570 Ga0501083_0004573
571 Ga0501044_0065372
572 nmdc:mga03683_14797_c1
573 nmdc:mga03n38_24674_c1
574 nmdc:mga00v17_9435_c1
575 nmdc:mga0yw44_15076_c1
576 nmdc:mga06z11_4303_c1
577 nmdc:mga07m45_26595_c1
578 nmdc:mga07m45_5496_c1
579 nmdc:mga09592_1557_c1
580 Ga0495601_0001958
581 Ga0495612_0018320
582 Ga0500610_0000272
583 Ga0495619_0008236
584 Ga0500556_0005151
585 Ga0500562_001323
586 Ga0500573_0000080
587 Ga0500573_0015761
588 Ga0500573_0029231
589 Ga0500616_0095839
590 2523383839
591 2644090875
592 2644320678
593 2739329866
594 2739364472
595 2739604404
596 2774400722
597 2785344441
598 2808884555
599 2808895442
600 2812320051
601 2812322133
602 2817509972
603 2819690812
604 2819728469
605 2839986672
606 2852636648
607 2855731116
608 2855770283
609 2857483666
610 2857728836
611 2863407664
612 2881414504
613 2902802906
614 2902813813
615 2904498814
616 2904500696
617 2904504729
618 2904773966
619 2905928221
620 2919393685
621 2920883531
622 2929214149
623 2939586732
624 2939599128
625 2939663373
626 2945921950
627 2946003822
628 2946025037
629 2946037812
630 2946061613
631 2956941610
632 2974319189
633 2974319218
634 2977231718
635 2977267031
636 2984527416
637 2984527445
638 2984592380
639 8004023836
640 8054110827

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

20

242

0.95

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

34

304

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
1bsv-assembly1.cif.gz_A gdp-fucose synthetase from escherichia coli complex with nadph 0.9728 15 321
1e6u-assembly1.cif.gz_A-2 gdp 4-keto-6-deoxy-d-mannose epimerase reductase 0.9698 15 317
1e7r-assembly1.cif.gz_A-2 gdp 4-keto-6-deoxy-d-mannose epimerase reductase y136e 0.9696 15 317
1bws-assembly1.cif.gz_A crystal structure of gdp-4-keto-6-deoxy-d-mannose epimerase/reductase from escherichia coli a key enzyme in the biosynthesis of gdp-l-fucose 0.9678 15 317
1e7q-assembly1.cif.gz_A-2 gdp 4-keto-6-deoxy-d-mannose epimerase reductase s107a 0.9665 15 317
ID Description Score Start End Superfamily
1bwsA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.937 15 302 3.40.50.720
1bwsA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9328 15 302 3.40.50.720
1e6uA02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9255 180 317 3.90.25.10
1e6uA02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.8976 180 317 3.90.25.10
af_A0A0R0KMW5_231_418_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8732 128 319 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A731UXI0-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9988 69 167 GO:0050577
AF-A0A2M7R8L0-F1-model_v4 GDP-fucose synthetase 0.9978 12 167 GO:0050577
AF-A0A4Q3FS72-F1-model_v4 GDP-L-fucose synthase 0.9967 12 269 GO:0016853
GO:0050577
AF-A0A2A4Q680-F1-model_v4 GDP-fucose synthetase 0.9964 12 150 GO:0050577
AF-A0A4Q3TSA3-F1-model_v4 deleted 0.996 12 172

Map