F402739

General Info

Members Datasets Scaffolds Average Seq Length
314 246 241 298

Family's Representative Sequence

Representative Sequence 3300028794|Ga0307515_10203354|Ga0307515_102033541
Length 341
Sequence VSEIGLLDGTCANGGAVSRGIAVLGLDEVVPFRGKLCCGMGNAELDIEALRTFVEVADAGGVSPAARRLSVSKSIVSRQLARIEAELGVQLLARTTRGAALTEAGVAFRDHAARACAEIDAARELLLPDGELCGRLRIAVPLTFGPTHLAPVLADMARRHPQLHIHSVYSDRFVDLIAEGFDCAIRVGYLPDSNLIARHVGPIYGKLVASPDYIAAHGSPETPDDLVAHQALMQGTEAWQFMDGDKTITVRPQGRFKADNGTALRAAALAGLGIAWLPDGITHDDVASGTLVPVMTRHPPPPAGVYVIRPPSQHPPRKVRVLTEMLIACFAEAPRLAGVGR

Samples

Sample ID Description Type Environment
1 2513237098 Bradyrhizobium elkanii WSM2783 Isolate Nodule
2 2513237137 Bradyrhizobium elkanii USDA 94 Isolate Nodule
3 2528768022 Bradyrhizobium japonicum USDA 123 Isolate Nodule
4 2529292951 Rhizobium sp. CCGE 510 Isolate Nodule
5 2582581865 Rhizobium sp. CF258 Isolate Rhizosphere
6 2599185188 Pseudomonas sp. NFACC45 Isolate Rhizoplane
7 2599185212 Pseudomonas sp. NFACC15-1 Isolate Rhizoplane
8 2599185300 Pseudomonas sp. NFACC39-1 Isolate Rhizoplane
9 2599185302 Pseudomonas sp. NFACC43 Isolate Rhizoplane
10 2599185304 Pseudomonas sp. NFACC47-1 Isolate Rhizoplane
11 2599185309 Pseudomonas sp. NFACC49-2 Isolate Rhizoplane
12 2599185310 Pseudomonas sp. NFACC09-4 Isolate Rhizoplane
13 2599185312 Pseudomonas sp. NFACC32-1 Isolate Rhizoplane
14 2599185318 Pseudomonas sp. NFACC13-1 Isolate Rhizoplane
15 2599185319 Pseudomonas sp. NFACC24-1 Isolate Rhizoplane
16 2599185320 Pseudomonas sp. NFACC36 Isolate Rhizoplane
17 2599185322 Pseudomonas sp. NFACC14 Isolate Rhizoplane
18 2599185323 Pseudomonas sp. NFACC37-1 Isolate Rhizoplane
19 2600255279 Rhizobium sp. NFIX01 Isolate Rhizoplane
20 2600255308 Rhizobium sp. NFIX02 Isolate Rhizoplane
21 2602042107 Bradyrhizobium sp. NFR13 Isolate Rhizoplane
22 2643221733 Bosea sp. Root381 Isolate Unclassified
23 2718217725 Pseudomonas fluorescens CREA-C16 Isolate Rhizosphere
24 2718217927 Rhizobium sp. N324 Isolate Nodule
25 2718217997 Rhizobium phaseoli sv. phaseoli R723 Isolate Nodule
26 2718218199 Rhizobium phaseoli sv. phaseoli N261 Isolate Nodule
27 2718218232 Rhizobium phaseoli sv. phaseoli N161 Isolate Nodule
28 2718218233 Rhizobium phaseoli sv. phaseoli R744 Isolate Nodule
29 2718218423 Rhizobium sp. N941 Isolate Nodule
30 2721755556 Rhizobium phaseoli sv. phaseoli N931 Isolate Nodule
31 2721755684 Rhizobium phaseoli sv. phaseoli N841 Isolate Nodule
32 2721755809 Rhizobium sp. N541 Isolate Nodule
33 2728369352 Rhizobium phaseoli sv. phaseoli N831 Isolate Nodule
34 2738541293 Rhizobium sp. GV031 Isolate Unclassified
35 2775506904 Phyllobacterium zundukense Tri-38 Isolate Unclassified
36 2791355123 Mesorhizobium sophorae ICMP 19535 Isolate Unclassified
37 2818991467 Bosea vestrisii 3192 Isolate Unclassified
38 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
39 2837678835 Jiella endophytica CBS5Q-3 Isolate Unclassified
40 2838048938 Rhizobium pisi 27/80 Isolate Nodule
41 2838061910 Rhizobium phaseoli L15 Isolate Nodule
42 2841957949 Bradyrhizobium sp. CIR1 Isolate Nodule
43 2842311132 Rhizobium phaseoli SEMIA 4002 Isolate Nodule
44 2842395702 Rhizobium ecuadorense SEMIA 4029 Isolate Nodule
45 2842447887 Rhizobium esperanzae SEMIA 4055 Isolate Nodule
46 2842757796 Stenotrophomonas sp. R-72406 Isolate Unclassified
47 2842775625 Roseomonas sp. R-71825 Isolate Unclassified
48 2854896431 Neorhizobium alkalisoli DSM 21826 Isolate Unclassified
49 2857509624 Bradyrhizobium sp. R-73088 Isolate Unclassified
50 2857524615 Tardiphaga sp. R-73074 Isolate Unclassified
51 2888419890 Bradyrhizobium sp. 1(2017) 63S1MB Isolate Unclassified
52 2893066018 Tardiphaga sp. P9-11 Isolate Unclassified
53 2894414249 Luteimonas sp. LNNU 24178 Isolate Rhizosphere
54 2919073203 Tardiphaga robiniae 1155 Isolate Unclassified
55 2919171160 Neorhizobium sp. 2083 Isolate Unclassified
56 2928070936 Variovorax gossypii 1167 Isolate Unclassified
57 2931369376 Pseudomonas fluorescens DR133 Isolate Rhizosphere
58 2935769743 Bradyrhizobium sp. LB12.1 Isolate Nodule
59 2935785616 Bradyrhizobium sp. LB5.2 Isolate Nodule
60 2935793552 Bradyrhizobium sp. LB8.2 Isolate Nodule
61 2970489779 Mesorhizobium sp. M7A.F.Ca.US.008.03.1.1 Isolate Nodule
62 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
63 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
64 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
65 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
66 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
67 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
68 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
69 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
70 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
71 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
72 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
73 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
74 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
75 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
76 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
77 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
78 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
79 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
80 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
81 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
82 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
83 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
84 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
85 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
86 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
87 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
88 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
89 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
90 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
91 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
92 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
93 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
94 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
95 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
96 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
97 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
98 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
99 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
100 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
101 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
102 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
103 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
104 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
105 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
106 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
116 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
117 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
118 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
119 3300030735 Rhizosphere soil microbial communities in a healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 4 Metagenome Rhizosphere
120 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
121 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
122 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
123 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
124 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
125 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
126 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
127 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
128 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
129 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
130 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
131 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
132 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
133 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
134 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
135 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
136 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
137 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
138 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
139 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
140 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
141 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
142 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
143 3300042009 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z071817_5348 Metagenome Rhizosphere
144 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
145 3300042013 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z071817_5339 Metagenome Rhizosphere
146 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
147 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
148 3300042136 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0530F_E14_072516_1294 Metagenome Rhizosphere
149 3300042137 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0913F_E14_072516_1519 Metagenome Rhizosphere
150 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
151 3300042533 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0826F_E14_072516_1472 Metagenome Rhizosphere
152 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
153 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
154 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
155 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
156 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
157 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
158 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
159 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
160 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
161 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
162 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
163 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
164 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
165 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
166 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
167 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
168 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
169 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
170 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
171 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
172 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
173 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
174 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
175 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
176 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
177 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
178 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
179 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
180 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
181 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
182 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
183 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
184 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
185 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
186 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
187 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
188 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
189 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
190 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
191 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
192 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
193 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
194 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
195 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
196 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
197 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
198 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
199 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
200 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
201 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
202 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
203 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
204 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
205 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
206 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
207 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
208 3300049673 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_A_3_drought Metagenome Rhizosphere
209 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
210 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
211 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
212 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
213 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
214 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
215 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
216 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
217 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
218 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
219 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
220 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
221 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
222 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
223 3300053116 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 endosphere Metagenome Endosphere
224 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
225 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
226 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
227 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
228 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
229 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
230 3300053145 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 endosphere Metagenome Endosphere
231 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
232 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
233 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
234 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
235 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere
236 8005275841 Rhizobium sp. N4311 Isolate Nodule
237 8005301065 Rhizobium bangladeshense 1017 Isolate Nodule
238 8005395548 Rhizobium sp. R339 Isolate Nodule
239 8005497431 Rhizobium phaseoli CCGM8 Isolate Unclassified
240 8005626139 Rhizobium phaseoli Y18 Isolate Nodule
241 8005668836 Rhizobium phaseoli CCGM9 Isolate Unclassified
242 8005695170 Rhizobium sp. RMa-01 Isolate Unclassified
243 8018176218 Rhizobium sp. N122 Isolate Nodule
244 8029995093 Pseudomonas atacamensis SM1 Isolate Rhizosphere
245 8055617313 Mesorhizobium onobrychidis OM4 Isolate Nodule
246 8056166840 Pseudomonas triticicola SWRI88 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.75
Metatranscriptomes 0
Isolates 23.25

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 23.25
Nodule 11.15
Rhizoplane 6.37
Rhizosphere 42.36
Stem 0
Stem Tuber 0
Unclassified 16.88

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10003734 3300001989 Bacteria 5813
2 JGI25151J46595_10000635 3300003187 Bacteria 30265
3 JGI25151J46595_10001286 3300003187 Bacteria 17668
4 JGI25151J46595_10006235 3300003187 Bacteria 6028
5 JGI25151J46595_10020779 3300003187 Bacteria 2762
6 rootH1_10282804 3300003323 Unclassified 2053
7 JGI25160J50197_1004471 3300003354 Bacteria 6043
8 Ga0055526_1000162 3300003771 Bacteria 59275
9 Ga0055526_1000394 3300003771 Bacteria 35283
10 Ga0055524_1000031 3300003775 Bacteria 187744
11 Ga0055524_1000289 3300003775 Bacteria 48781
12 Ga0055536_1000035 3300003781 Bacteria 145848
13 Ga0065165_1001623 3300005262 Bacteria 22903
14 Ga0065165_1027518 3300005262 Bacteria 1852
15 Ga0070690_100185207 3300005330 Bacteria 1440
16 Ga0068869_100020909 3300005334 Bacteria 4496
17 Ga0068868_100029190 3300005338 Bacteria 4223
18 Ga0070689_100139271 3300005340 Bacteria 1950
19 Ga0070668_100027377 3300005347 Bacteria 4328
20 Ga0070668_100166266 3300005347 Bacteria 1793
21 Ga0070669_100048682 3300005353 Plasmid 3094
22 Ga0070671_100031195 3300005355 Bacteria 4402
23 Ga0070663_100073941 3300005455 Bacteria 2487
24 Ga0070665_100003478 3300005548 Bacteria 16778
25 Ga0070665_100052148 3300005548 Bacteria 4104
26 Ga0070665_100375959 3300005548 Bacteria 1428
27 Ga0068859_100081311 3300005617 Bacteria 3282
28 Ga0075362_10060058 3300006177 Bacteria 1718
29 Ga0075370_10015934 3300006353 Bacteria 4035
30 Ga0075370_10101530 3300006353 Bacteria 1665
31 Ga0097620_100081317 3300006931 Bacteria 3282
32 Ga0099826_10000038 3300006948 Bacteria 101106
33 Ga0099826_10000536 3300006948 Bacteria 18784
34 Ga0105251_10003047 3300009011 Bacteria 12479
35 Ga0105251_10110972 3300009011 Bacteria 1249
36 Ga0105237_10046008 3300009545 Bacteria 4390
37 Ga0105238_10032443 3300009551 Bacteria 5315
38 Ga0157373_10010842 3300013100 Bacteria 6707
39 Ga0157371_10005215 3300013102 Bacteria 11046
40 Ga0157370_10199446 3300013104 Bacteria 1856
41 Ga0157369_10000302 3300013105 Bacteria 65999
42 Ga0182006_1007516 3300015261 Bacteria 4982
43 Ga0182006_1010074 3300015261 Bacteria 4212
44 Ga0214544_1003520 3300021320 Bacteria 32265
45 Ga0207425_1004050 3300025245 Bacteria 4492
46 Ga0209129_1000120 3300025258 Bacteria 137898
47 Ga0209673_1032932 3300025273 Bacteria 1589
48 Ga0209675_1001764 3300025291 Bacteria 11849
49 Ga0209676_1000020 3300025292 Bacteria 617256
50 Ga0209676_1002993 3300025292 Bacteria 10996
51 Ga0209025_1000008 3300025294 Bacteria 1130876
52 Ga0209025_1000044 3300025294 Bacteria 349480
53 Ga0209025_1000252 3300025294 Bacteria 126233
54 Ga0209025_1000408 3300025294 Bacteria 86719
55 Ga0209025_1002451 3300025294 Bacteria 19605
56 Ga0209025_1004966 3300025294 Bacteria 11127
57 Ga0209564_1000135 3300025295 Bacteria 188117
58 Ga0209564_1000168 3300025295 Bacteria 158368
59 Ga0209564_1000864 3300025295 Bacteria 40349
60 Ga0209564_1016041 3300025295 Bacteria 3010
61 Ga0209758_1002830 3300025297 Bacteria 16861
62 Ga0209758_1032484 3300025297 Bacteria 2117
63 Ga0209758_1037650 3300025297 Bacteria 1866
64 Ga0209050_1000009 3300025298 Bacteria 1047265
65 Ga0209256_1000107 3300025299 Bacteria 186233
66 Ga0209256_1000429 3300025299 Bacteria 65911
67 Ga0207426_1002966 3300025302 Bacteria 9931
68 Ga0209051_1000008 3300025303 Bacteria 706935
69 Ga0209257_1002065 3300025304 Bacteria 21201
70 Ga0207713_1001228 3300025735 Bacteria 21338
71 Ga0207671_10018251 3300025914 Bacteria 5387
72 Ga0207681_10011066 3300025923 Bacteria 5540
73 Ga0207694_10039830 3300025924 Bacteria 3617
74 Ga0207644_10035382 3300025931 Bacteria 3499
75 Ga0207670_10118651 3300025936 Bacteria 1919
76 Ga0207689_10009778 3300025942 Bacteria 8262
77 Ga0207668_10102303 3300025972 Bacteria 2131
78 Ga0207668_10174063 3300025972 Bacteria 1691
79 Ga0207675_100115077 3300026118 Bacteria 2541
80 Ga0209281_1001817 3300027111 Bacteria 10629
81 Ga0209282_1000218 3300027666 Bacteria 29862
82 Ga0268266_10016833 3300028379 Bacteria 6248
83 Ga0307515_10203354 3300028794 Bacteria 1849
84 Ga0316178_1090986 3300030735 Bacteria 9242
85 Ga0316183_1130809 3300030742 Bacteria 2852
86 Ga0316181_1038270 3300030744 Bacteria 4641
87 Ga0316182_1334534 3300030745 Bacteria 2084
88 Ga0307513_10000363 3300031456 Bacteria 66311
89 Ga0307408_100026739 3300031548 Bacteria 3967
90 Ga0307408_100079681 3300031548 Bacteria 2444
91 Ga0307406_10004362 3300031901 Bacteria 7698
92 Ga0307412_10006645 3300031911 Bacteria 6552
93 Ga0307412_10052092 3300031911 Bacteria 2708
94 Ga0307411_10198195 3300032005 Bacteria 1539
95 Ga0373936_0022482 3300035113 Bacteria 2455
96 Ga0373956_0163039 3300035119 Bacteria 1051
97 Ga0373943_0014262 3300035170 Bacteria 3595
98 Ga0373955_0095910 3300035172 Bacteria 1697
99 Ga0373935_0029567 3300035692 Bacteria 3391
100 Ga0373927_0013574 3300035695 Bacteria 5410
101 Ga0373947_0065375 3300035725 Bacteria 2218
102 Ga0373937_0055313 3300036401 Bacteria 3643
103 Ga0373925_0059047 3300037068 Bacteria 2876
104 Ga0395905_0224194 3300037471 Bacteria 1759
105 Ga0439438_001452 3300041405 Bacteria 10439
106 Ga0439447_007728 3300041407 Bacteria 3385
107 Ga0439466_0009889 3300041411 Bacteria 3551
108 Ga0439445_0014173 3300042004 Bacteria 1938
109 Ga0439432_018992 3300042006 Bacteria 2293
110 Ga0439432_020159 3300042006 Bacteria 2218
111 Ga0439451_001545 3300042009 Bacteria 4559
112 Ga0439452_000024 3300042010 Bacteria 230396
113 Ga0439456_000506 3300042013 Bacteria 8365
114 Ga0439463_000311 3300042016 Bacteria 13653
115 Ga0439463_006269 3300042016 Bacteria 2949
116 Ga0450911_001367 3300042115 Bacteria 5718
117 Ga0450900_000193 3300042136 Bacteria 3966
118 Ga0450902_001121 3300042137 Bacteria 3565
119 Ga0439446_0001712 3300042156 Bacteria 5088
120 Ga0450901_000278 3300042533 Bacteria 6242
121 Ga0453683_0030210 3300044673 Bacteria 3426
122 Ga0451576_0228143 3300045051 Bacteria 1945
123 Ga0495629_0021652 3300046459 Bacteria 4587
124 Ga0495638_0019121 3300046460 Bacteria 4536
125 Ga0495638_0022144 3300046460 Bacteria 4174
126 Ga0495641_0010144 3300046461 Bacteria 5501
127 Ga0495639_0077361 3300046475 Bacteria 1544
128 Ga0495662_0023458 3300046476 Bacteria 2979
129 Ga0495594_0012048 3300046499 Bacteria 4501
130 Ga0495607_0000055 3300046501 Bacteria 113745
131 Ga0495607_0017821 3300046501 Bacteria 4547
132 Ga0495583_0007487 3300046506 Bacteria 6844
133 Ga0495610_0007174 3300046512 Bacteria 7495
134 Ga0495616_0018619 3300046513 Bacteria 3807
135 Ga0495620_0001378 3300046515 Bacteria 14626
136 Ga0495620_0022618 3300046515 Bacteria 3024
137 Ga0495631_0016652 3300046518 Bacteria 3499
138 Ga0495643_0000509 3300046522 Bacteria 48505
139 Ga0495643_0001629 3300046522 Bacteria 19809
140 Ga0495643_0053739 3300046522 Bacteria 2158
141 Ga0495643_0088150 3300046522 Bacteria 1605
142 Ga0495648_0000704 3300046524 Bacteria 35656
143 Ga0495663_0002238 3300046525 Bacteria 5882
144 Ga0495652_0033526 3300046529 Bacteria 4483
145 Ga0495654_0069384 3300046530 Bacteria 1674
146 Ga0495640_0015681 3300046533 Bacteria 5691
147 Ga0495609_0080585 3300046538 Bacteria 1423
148 Ga0495633_0000426 3300046558 Bacteria 43843
149 Ga0495667_0015361 3300046559 Bacteria 5173
150 Ga0495668_0073126 3300046616 Bacteria 1883
151 Ga0495634_0022644 3300046642 Bacteria 4425
152 Ga0495611_0017703 3300046648 Bacteria 3051
153 Ga0495625_0073910 3300046660 Bacteria 2388
154 Ga0495635_0035030 3300046663 Bacteria 3481
155 Ga0495661_0067331 3300046665 Bacteria 2104
156 Ga0495599_0102971 3300046678 Bacteria 1779
157 Ga0495646_0013473 3300046680 Bacteria 5197
158 Ga0495671_0006053 3300046692 Bacteria 7030
159 Ga0495649_0014367 3300046694 Bacteria 4541
160 Ga0495649_0086511 3300046694 Bacteria 1673
161 Ga0495660_0000232 3300046810 Bacteria 54549
162 Ga0495660_0001761 3300046810 Bacteria 14410
163 Ga0495581_0024272 3300047315 Bacteria 3514
164 Ga0495604_0047934 3300047317 Bacteria 3326
165 Ga0495672_0000355 3300047320 Bacteria 58647
166 Ga0495672_0037362 3300047320 Bacteria 2972
167 Ga0495676_0014526 3300047321 Bacteria 7045
168 Ga0495673_0000014 3300047469 Bacteria 599202
169 Ga0495673_0000703 3300047469 Bacteria 32508
170 Ga0495686_0039777 3300047472 Bacteria 3001
171 Ga0496102_0156246 3300048905 Bacteria 2144
172 Ga0496106_0000529 3300048909 Bacteria 27067
173 Ga0496107_0181994 3300048910 Bacteria 1561
174 Ga0496114_0000155 3300048917 Bacteria 49214
175 Ga0496116_0001852 3300048919 Bacteria 22894
176 Ga0496117_0029931 3300048920 Bacteria 4188
177 Ga0496117_0063729 3300048920 Bacteria 2518
178 Ga0496117_0174361 3300048920 Bacteria 1244
179 Ga0496118_0007619 3300048921 Bacteria 11406
180 Ga0496118_0019032 3300048921 Bacteria 6155
181 Ga0496118_0021824 3300048921 Bacteria 5620
182 Ga0496118_0031263 3300048921 Bacteria 4418
183 Ga0496118_0168592 3300048921 Bacteria 1341
184 Ga0496120_0136998 3300048923 Bacteria 1247
185 Ga0496121_0006748 3300048924 Bacteria 14085
186 Ga0496121_0016550 3300048924 Bacteria 7606
187 Ga0496121_0016610 3300048924 Bacteria 7586
188 Ga0496121_0092722 3300048924 Bacteria 2354
189 Ga0496121_0134058 3300048924 Bacteria 1848
190 Ga0496122_0013268 3300048925 Bacteria 8079
191 Ga0496122_0023553 3300048925 Bacteria 5422
192 Ga0496122_0046134 3300048925 Bacteria 3378
193 Ga0496122_0069860 3300048925 Bacteria 2513
194 Ga0496122_0122890 3300048925 Bacteria 1669
195 Ga0496123_0011428 3300048926 Bacteria 7695
196 Ga0496123_0030764 3300048926 Unclassified 3922
197 Ga0496123_0049709 3300048926 Bacteria 2808
198 Ga0496123_0056140 3300048926 Bacteria 2577
199 Ga0496124_0061466 3300048927 Bacteria 3148
200 Ga0496125_0013713 3300048928 Bacteria 7950
201 Ga0496125_0130839 3300048928 Unclassified 1767
202 Ga0496126_0009529 3300048929 Bacteria 10301
203 Ga0496126_0258344 3300048929 Bacteria 1449
204 Ga0495678_013277 3300049459 Bacteria 3875
205 Ga0495682_0000030 3300049460 Bacteria 139542
206 Ga0501240_000092 3300049673 Bacteria 5627
207 nmdc:mga03683_14399_c1 3300050489 Bacteria 2926
208 nmdc:mga00v17_94382_c1 3300050491 Bacteria 1882
209 nmdc:mga0yw44_309_c1 3300050492 Bacteria 9023
210 nmdc:mga0yw44_42731_c1 3300050492 Bacteria 2704
211 nmdc:mga07m45_10299_c1 3300050496 Bacteria 4878
212 nmdc:mga07m45_21490_c1 3300050496 Bacteria 3514
213 Ga0495601_0028563 3300053077 Bacteria 3455
214 Ga0500610_0000331 3300053079 Bacteria 14228
215 Ga0495595_0050590 3300053084 Bacteria 1925
216 Ga0500643_001610 3300053087 Bacteria 12645
217 Ga0500643_001864 3300053087 Bacteria 11496
218 Ga0500643_020444 3300053087 Bacteria 2165
219 Ga0500644_0051041 3300053088 Bacteria 1418
220 Ga0500646_0025027 3300053090 Bacteria 1610
221 Ga0500651_0035132 3300053093 Bacteria 3160
222 Ga0500566_0000930 3300053094 Bacteria 16751
223 Ga0500641_0076034 3300053096 Bacteria 1420
224 Ga0500556_0000002 3300053104 Bacteria 773626
225 Ga0500556_0058511 3300053104 Bacteria 1413
226 Ga0500592_002082 3300053116 Bacteria 3225
227 Ga0500595_008413 3300053119 Bacteria 4215
228 Ga0500608_001157 3300053122 Bacteria 9382
229 Ga0500642_0000010 3300053130 Bacteria 272552
230 Ga0500652_002432 3300053131 Bacteria 5606
231 Ga0500655_000193 3300053133 Bacteria 14640
232 Ga0500559_0000919 3300053136 Bacteria 18725
233 Ga0500586_000936 3300053145 Bacteria 6003
234 Ga0500590_024378 3300053148 Bacteria 3140
235 Ga0500616_0000069 3300053153 Bacteria 234334
236 Ga0500616_0148911 3300053153 Bacteria 1086
237 Ga0500622_0001697 3300053156 Bacteria 17095
238 Ga0500637_0019694 3300053178 Bacteria 3643
239 Ga0500645_000425 3300053730 Bacteria 29203
240 Ga0500645_002849 3300053730 Bacteria 7435
241 Ga0500645_010985 3300053730 Bacteria 2974

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037471 Ga0395905_0224194 Ga0395905_0224194_38_808 254
2 3300006353 Ga0075370_10101530 Ga0075370_101015302 269
3 3300025295 Ga0209564_1016041 Ga0209564_10160412 269
4 3300003771 Ga0055526_1000394 Ga0055526_100039419 277
5 3300003775 Ga0055524_1000031 Ga0055524_1000031112 277
6 3300025273 Ga0209673_1032932 Ga0209673_10329322 277
7 3300025291 Ga0209675_1001764 Ga0209675_10017644 277
8 3300025295 Ga0209564_1000135 Ga0209564_100013580 277
9 3300025299 Ga0209256_1000107 Ga0209256_100010779 277
10 3300048919 Ga0496116_0001852 Ga0496116_0001852_12598_13476 277
11 3300048924 Ga0496121_0006748 Ga0496121_0006748_12456_13334 277
12 3300048925 Ga0496122_0069860 Ga0496122_0069860_797_1675 277
13 3300053153 Ga0500616_0000069 Ga0500616_0000069_207075_207953 277
14 3300005353 Ga0070669_100048682 Ga0070669_1000486822 278
15 3300009011 Ga0105251_10003047 Ga0105251_1000304711 278
16 3300025735 Ga0207713_1001228 Ga0207713_100122815 278
17 3300025923 Ga0207681_10011066 Ga0207681_100110663 278
18 3300048905 Ga0496102_0156246 Ga0496102_0156246_874_1746 278
19 3300050492 nmdc:mga0yw44_42731_c1 nmdc:mga0yw44_42731_c1_690_1583 278
20 3300050496 nmdc:mga07m45_21490_c1 nmdc:mga07m45_21490_c1_129_1022 278
21 3300048925 Ga0496122_0023553 Ga0496122_0023553_277_1188 279
22 3300048926 Ga0496123_0056140 Ga0496123_0056140_875_1786 279
23 3300046665 Ga0495661_0067331 Ga0495661_0067331_16_882 281
24 3300048923 Ga0496120_0136998 Ga0496120_0136998_14_880 281
25 iso_pu_bacteria 2791355123 2792747861 283
26 iso_pu_bacteria 2599185319 2600040910 284
27 iso_pu_bacteria 2599185323 2600065744 284
28 iso_pu_bacteria 2528768022 2528856819 286
29 iso_pu_bacteria 2529292951 2530644797 286
30 iso_pu_bacteria 2599185188 2599503836 286
31 iso_pu_bacteria 2599185212 2599614331 286
32 iso_pu_bacteria 2599185300 2599933266 286
33 iso_pu_bacteria 2599185302 2599944470 286
34 iso_pu_bacteria 2599185304 2599954942 286
35 iso_pu_bacteria 2599185309 2599984129 286
36 iso_pu_bacteria 2599185310 2599988794 286
37 iso_pu_bacteria 2599185312 2600001302 286
38 iso_pu_bacteria 2599185318 2600036244 286
39 iso_pu_bacteria 2599185320 2600049072 286
40 iso_pu_bacteria 2599185322 2600059581 286
41 iso_pu_bacteria 2600255279 2601612803 286
42 iso_pu_bacteria 2600255308 2601748526 286
43 iso_pu_bacteria 2602042107 2603859021 286
44 iso_pu_bacteria 2643221733 2644729542 286
45 iso_pu_bacteria 2718217725 2718633897 286
46 iso_pu_bacteria 2718217927 2719388906 286
47 iso_pu_bacteria 2718218233 2720619568 286
48 iso_pu_bacteria 2718218423 2721402776 286
49 iso_pu_bacteria 2721755809 2724034842 286
50 iso_pu_bacteria 2738541293 2738802750 286
51 iso_pu_bacteria 2818991467 2819721371 286
52 iso_pu_bacteria 2821123053 2821130341 286
53 iso_pu_bacteria 2837678835 2837679388 286
54 iso_pu_bacteria 2837678835 2837682866 286
55 iso_pu_bacteria 2838048938 2838054071 286
56 iso_pu_bacteria 2838061910 2838066574 286
57 iso_pu_bacteria 2841957949 2841960803 286
58 iso_pu_bacteria 2842311132 2842315115 286
59 iso_pu_bacteria 2842395702 2842396605 286
60 iso_pu_bacteria 2842447887 2842451417 286
61 iso_pu_bacteria 2842757796 2842760510 286
62 iso_pu_bacteria 2842775625 2842777909 286
63 iso_pu_bacteria 2854896431 2854900584 286
64 iso_pu_bacteria 2857509624 2857515345 286
65 iso_pu_bacteria 2857524615 2857527876 286
66 iso_pu_bacteria 2888419890 2888427413 286
67 iso_pu_bacteria 2893066018 2893068234 286
68 iso_pu_bacteria 2894414249 2894415092 286
69 iso_pu_bacteria 2919171160 2919176317 286
70 iso_pu_bacteria 2928070936 2928076987 286
71 iso_pu_bacteria 2931369376 2931369936 286
72 iso_pu_bacteria 2935769743 2935776707 286
73 iso_pu_bacteria 2935785616 2935792603 286
74 iso_pu_bacteria 2935793552 2935800601 286
75 iso_pu_bacteria 2970489779 2970492876 286
76 iso_pu_bacteria 8005275841 8005276323 286
77 iso_pu_bacteria 8005395548 8005398086 286
78 iso_pu_bacteria 8005626139 8005627361 286
79 iso_pu_bacteria 8029995093 8029997843 286
80 iso_pu_bacteria 8055617313 8055622963 286
81 iso_pu_bacteria 8056166840 8056168247 286
82 3300003771 Ga0055526_1000162 Ga0055526_100016250 288
83 3300003775 Ga0055524_1000289 Ga0055524_10002898 288
84 3300006177 Ga0075362_10060058 Ga0075362_100600581 288
85 3300025295 Ga0209564_1000168 Ga0209564_1000168144 288
86 3300025299 Ga0209256_1000429 Ga0209256_100042962 288
87 3300046522 Ga0495643_0001629 Ga0495643_0001629_17871_18776 288
88 3300046694 Ga0495649_0014367 Ga0495649_0014367_465_1370 288
89 3300050489 nmdc:mga03683_14399_c1 nmdc:mga03683_14399_c1_1899_2783 288
90 3300003187 JGI25151J46595_10020779 JGI25151J46595_100207791 289
91 3300005347 Ga0070668_100027377 Ga0070668_1000273775 289
92 3300025294 Ga0209025_1000044 Ga0209025_1000044223 289
93 3300025972 Ga0207668_10102303 Ga0207668_101023032 289
94 3300003187 JGI25151J46595_10000635 JGI25151J46595_1000063525 290
95 3300003187 JGI25151J46595_10001286 JGI25151J46595_100012867 290
96 3300003187 JGI25151J46595_10006235 JGI25151J46595_100062357 290
97 3300003323 rootH1_10282804 rootH1_102828042 290
98 3300003354 JGI25160J50197_1004471 JGI25160J50197_10044714 290
99 3300003781 Ga0055536_1000035 Ga0055536_100003548 290
100 3300005262 Ga0065165_1027518 Ga0065165_10275181 290
101 3300005355 Ga0070671_100031195 Ga0070671_1000311953 290
102 3300005455 Ga0070663_100073941 Ga0070663_1000739413 290
103 3300005548 Ga0070665_100003478 Ga0070665_10000347827 290
104 3300005548 Ga0070665_100052148 Ga0070665_1000521487 290
105 3300005548 Ga0070665_100375959 Ga0070665_1003759592 290
106 3300006948 Ga0099826_10000038 Ga0099826_1000003890 290
107 3300006948 Ga0099826_10000536 Ga0099826_1000053616 290
108 3300009011 Ga0105251_10110972 Ga0105251_101109721 290
109 3300009551 Ga0105238_10032443 Ga0105238_100324435 290
110 3300013104 Ga0157370_10199446 Ga0157370_101994462 290
111 3300013105 Ga0157369_10000302 Ga0157369_1000030252 290
112 3300015261 Ga0182006_1007516 Ga0182006_10075162 290
113 3300021320 Ga0214544_1003520 Ga0214544_100352010 290
114 3300025245 Ga0207425_1004050 Ga0207425_10040503 290
115 3300025258 Ga0209129_1000120 Ga0209129_100012010 290
116 3300025292 Ga0209676_1000020 Ga0209676_1000020321 290
117 3300025292 Ga0209676_1002993 Ga0209676_10029936 290
118 3300025294 Ga0209025_1000008 Ga0209025_100000825 290
119 3300025294 Ga0209025_1000252 Ga0209025_10002526 290
120 3300025294 Ga0209025_1000408 Ga0209025_100040856 290
121 3300025294 Ga0209025_1004966 Ga0209025_10049667 290
122 3300025297 Ga0209758_1002830 Ga0209758_100283014 290
123 3300025297 Ga0209758_1032484 Ga0209758_10324841 290
124 3300025297 Ga0209758_1037650 Ga0209758_10376501 290
125 3300025298 Ga0209050_1000009 Ga0209050_1000009882 290
126 3300025302 Ga0207426_1002966 Ga0207426_10029665 290
127 3300025303 Ga0209051_1000008 Ga0209051_1000008639 290
128 3300025304 Ga0209257_1002065 Ga0209257_10020652 290
129 3300025924 Ga0207694_10039830 Ga0207694_100398303 290
130 3300025931 Ga0207644_10035382 Ga0207644_100353823 290
131 3300025972 Ga0207668_10174063 Ga0207668_101740631 290
132 3300027111 Ga0209281_1001817 Ga0209281_10018174 290
133 3300027666 Ga0209282_1000218 Ga0209282_100021811 290
134 3300028379 Ga0268266_10016833 Ga0268266_100168336 290
135 3300030735 Ga0316178_1090986 Ga0316178_10909865 290
136 3300030742 Ga0316183_1130809 Ga0316183_11308092 290
137 3300030744 Ga0316181_1038270 Ga0316181_10382703 290
138 3300031456 Ga0307513_10000363 Ga0307513_1000036368 290
139 3300031548 Ga0307408_100026739 Ga0307408_1000267392 290
140 3300031911 Ga0307412_10006645 Ga0307412_100066454 290
141 3300031911 Ga0307412_10052092 Ga0307412_100520922 290
142 3300032005 Ga0307411_10198195 Ga0307411_101981951 290
143 3300041405 Ga0439438_001452 Ga0439438_001452_7201_8097 290
144 3300041407 Ga0439447_007728 Ga0439447_007728_2262_3158 290
145 3300041411 Ga0439466_0009889 Ga0439466_0009889_2636_3532 290
146 3300042006 Ga0439432_018992 Ga0439432_018992_1195_2091 290
147 3300042006 Ga0439432_020159 Ga0439432_020159_1003_1878 290
148 3300042009 Ga0439451_001545 Ga0439451_001545_2197_3093 290
149 3300042010 Ga0439452_000024 Ga0439452_000024_139728_140624 290
150 3300042013 Ga0439456_000506 Ga0439456_000506_2546_3442 290
151 3300042115 Ga0450911_001367 Ga0450911_001367_2315_3211 290
152 3300042136 Ga0450900_000193 Ga0450900_000193_2489_3385 290
153 3300042137 Ga0450902_001121 Ga0450902_001121_2339_3235 290
154 3300042156 Ga0439446_0001712 Ga0439446_0001712_2775_3674 290
155 3300046460 Ga0495638_0019121 Ga0495638_0019121_3019_3912 290
156 3300046460 Ga0495638_0022144 Ga0495638_0022144_2820_3713 290
157 3300046501 Ga0495607_0000055 Ga0495607_0000055_31461_32357 290
158 3300046506 Ga0495583_0007487 Ga0495583_0007487_4007_4897 290
159 3300046513 Ga0495616_0018619 Ga0495616_0018619_1471_2361 290
160 3300046515 Ga0495620_0001378 Ga0495620_0001378_3557_4453 290
161 3300046522 Ga0495643_0000509 Ga0495643_0000509_8588_9463 290
162 3300046522 Ga0495643_0053739 Ga0495643_0053739_706_1647 290
163 3300046524 Ga0495648_0000704 Ga0495648_0000704_12246_13139 290
164 3300046525 Ga0495663_0002238 Ga0495663_0002238_3946_4839 290
165 3300046530 Ga0495654_0069384 Ga0495654_0069384_316_1209 290
166 3300046538 Ga0495609_0080585 Ga0495609_0080585_512_1402 290
167 3300046616 Ga0495668_0073126 Ga0495668_0073126_827_1723 290
168 3300046648 Ga0495611_0017703 Ga0495611_0017703_789_1679 290
169 3300046660 Ga0495625_0073910 Ga0495625_0073910_481_1356 290
170 3300046692 Ga0495671_0006053 Ga0495671_0006053_1415_2311 290
171 3300046694 Ga0495649_0086511 Ga0495649_0086511_405_1313 290
172 3300046810 Ga0495660_0000232 Ga0495660_0000232_39939_40829 290
173 3300046810 Ga0495660_0001761 Ga0495660_0001761_6894_7811 290
174 3300047320 Ga0495672_0000355 Ga0495672_0000355_9045_9920 290
175 3300047320 Ga0495672_0037362 Ga0495672_0037362_843_1721 290
176 3300047469 Ga0495673_0000014 Ga0495673_0000014_534975_535874 290
177 3300047469 Ga0495673_0000703 Ga0495673_0000703_574_1470 290
178 3300048909 Ga0496106_0000529 Ga0496106_0000529_5613_6488 290
179 3300048910 Ga0496107_0181994 Ga0496107_0181994_363_1238 290
180 3300048917 Ga0496114_0000155 Ga0496114_0000155_10662_11552 290
181 3300048920 Ga0496117_0029931 Ga0496117_0029931_1260_2168 290
182 3300048920 Ga0496117_0063729 Ga0496117_0063729_1508_2401 290
183 3300048921 Ga0496118_0019032 Ga0496118_0019032_2321_3229 290
184 3300048921 Ga0496118_0031263 Ga0496118_0031263_604_1497 290
185 3300048921 Ga0496118_0168592 Ga0496118_0168592_237_1130 290
186 3300048924 Ga0496121_0016550 Ga0496121_0016550_5828_6736 290
187 3300048924 Ga0496121_0016610 Ga0496121_0016610_4776_5651 290
188 3300048924 Ga0496121_0134058 Ga0496121_0134058_765_1658 290
189 3300048925 Ga0496122_0013268 Ga0496122_0013268_1552_2445 290
190 3300048926 Ga0496123_0011428 Ga0496123_0011428_3666_4559 290
191 3300048926 Ga0496123_0030764 Ga0496123_0030764_2733_3626 290
192 3300048928 Ga0496125_0013713 Ga0496125_0013713_993_1886 290
193 3300048928 Ga0496125_0130839 Ga0496125_0130839_511_1404 290
194 3300048929 Ga0496126_0009529 Ga0496126_0009529_2505_3395 290
195 3300048929 Ga0496126_0258344 Ga0496126_0258344_490_1383 290
196 3300049459 Ga0495678_013277 Ga0495678_013277_1337_2233 290
197 3300049460 Ga0495682_0000030 Ga0495682_0000030_80437_81333 290
198 3300049673 Ga0501240_000092 Ga0501240_000092_2490_3386 290
199 3300053087 Ga0500643_001610 Ga0500643_001610_11017_11889 290
200 3300053090 Ga0500646_0025027 Ga0500646_0025027_274_1167 290
201 3300053093 Ga0500651_0035132 Ga0500651_0035132_46_939 290
202 3300053094 Ga0500566_0000930 Ga0500566_0000930_3567_4460 290
203 3300053104 Ga0500556_0000002 Ga0500556_0000002_726327_727220 290
204 3300053104 Ga0500556_0058511 Ga0500556_0058511_294_1187 290
205 3300053122 Ga0500608_001157 Ga0500608_001157_1559_2452 290
206 3300053136 Ga0500559_0000919 Ga0500559_0000919_10274_11167 290
207 3300053148 Ga0500590_024378 Ga0500590_024378_44_937 290
208 3300053178 Ga0500637_0019694 Ga0500637_0019694_908_1801 290
209 3300053730 Ga0500645_010985 Ga0500645_010985_826_1719 290
210 3300044673 Ga0453683_0030210 Ga0453683_0030210_1614_2534 291
211 3300045051 Ga0451576_0228143 Ga0451576_0228143_186_1106 291
212 iso_pu_bacteria 2582581865 2585388839 291
213 iso_pu_bacteria 8005695170 8005701688 291
214 3300047472 Ga0495686_0039777 Ga0495686_0039777_1266_2153 294
215 iso_pu_bacteria 2718217997 2719664948 294
216 iso_pu_bacteria 2718218199 2720491368 294
217 iso_pu_bacteria 2718218232 2720612728 294
218 iso_pu_bacteria 2721755556 2723026387 294
219 iso_pu_bacteria 2721755684 2723559929 294
220 iso_pu_bacteria 2728369352 2730107323 294
221 iso_pu_bacteria 8005301065 8005302164 294
222 iso_pu_bacteria 8005497431 8005499679 294
223 iso_pu_bacteria 8005668836 8005671099 294
224 iso_pu_bacteria 8018176218 8018177749 294
225 3300005262 Ga0065165_1001623 Ga0065165_100162311 295
226 3300006353 Ga0075370_10015934 Ga0075370_100159343 295
227 3300013100 Ga0157373_10010842 Ga0157373_100108424 295
228 3300013102 Ga0157371_10005215 Ga0157371_100052156 295
229 3300015261 Ga0182006_1010074 Ga0182006_10100745 295
230 3300025294 Ga0209025_1002451 Ga0209025_10024512 295
231 3300025295 Ga0209564_1000864 Ga0209564_100086423 295
232 3300031548 Ga0307408_100079681 Ga0307408_1000796812 295
233 3300031901 Ga0307406_10004362 Ga0307406_100043626 295
234 3300042004 Ga0439445_0014173 Ga0439445_0014173_713_1624 295
235 3300042016 Ga0439463_000311 Ga0439463_000311_9361_10272 295
236 3300042016 Ga0439463_006269 Ga0439463_006269_944_1855 295
237 3300046501 Ga0495607_0017821 Ga0495607_0017821_2054_2962 295
238 3300046515 Ga0495620_0022618 Ga0495620_0022618_787_1698 295
239 3300046518 Ga0495631_0016652 Ga0495631_0016652_1130_2038 295
240 3300046522 Ga0495643_0088150 Ga0495643_0088150_615_1523 295
241 3300050491 nmdc:mga00v17_94382_c1 nmdc:mga00v17_94382_c1_584_1513 295
242 3300050496 nmdc:mga07m45_10299_c1 nmdc:mga07m45_10299_c1_402_1313 295
243 3300053079 Ga0500610_0000331 Ga0500610_0000331_7984_8895 295
244 3300053087 Ga0500643_020444 Ga0500643_020444_1078_1986 295
245 3300053088 Ga0500644_0051041 Ga0500644_0051041_327_1235 295
246 3300053096 Ga0500641_0076034 Ga0500641_0076034_492_1403 295
247 3300053116 Ga0500592_002082 Ga0500592_002082_1746_2654 295
248 3300053130 Ga0500642_0000010 Ga0500642_0000010_44659_45567 295
249 3300053131 Ga0500652_002432 Ga0500652_002432_4155_5063 295
250 3300053133 Ga0500655_000193 Ga0500655_000193_5614_6525 295
251 3300053145 Ga0500586_000936 Ga0500586_000936_271_1179 295
252 3300053153 Ga0500616_0148911 Ga0500616_0148911_81_989 295
253 3300053156 Ga0500622_0001697 Ga0500622_0001697_4716_5624 295
254 3300053730 Ga0500645_000425 Ga0500645_000425_17430_18326 295
255 3300046512 Ga0495610_0007174 Ga0495610_0007174_4963_5886 296
256 3300048920 Ga0496117_0174361 Ga0496117_0174361_307_1206 296
257 3300048921 Ga0496118_0021824 Ga0496118_0021824_493_1392 296
258 3300048925 Ga0496122_0046134 Ga0496122_0046134_1157_2056 296
259 3300048925 Ga0496122_0122890 Ga0496122_0122890_122_1021 296
260 3300048926 Ga0496123_0049709 Ga0496123_0049709_788_1687 296
261 3300048927 Ga0496124_0061466 Ga0496124_0061466_1372_2271 296
262 3300050492 nmdc:mga0yw44_309_c1 nmdc:mga0yw44_309_c1_4707_5603 296
263 3300035113 Ga0373936_0022482 Ga0373936_0022482_606_1526 297
264 3300035119 Ga0373956_0163039 Ga0373956_0163039_52_972 297
265 3300035170 Ga0373943_0014262 Ga0373943_0014262_318_1238 297
266 3300035172 Ga0373955_0095910 Ga0373955_0095910_699_1619 297
267 3300035692 Ga0373935_0029567 Ga0373935_0029567_2339_3259 297
268 3300035695 Ga0373927_0013574 Ga0373927_0013574_3611_4531 297
269 3300035725 Ga0373947_0065375 Ga0373947_0065375_77_997 297
270 3300036401 Ga0373937_0055313 Ga0373937_0055313_2001_2921 297
271 3300037068 Ga0373925_0059047 Ga0373925_0059047_219_1139 297
272 3300046459 Ga0495629_0021652 Ga0495629_0021652_1001_1921 297
273 3300046461 Ga0495641_0010144 Ga0495641_0010144_4495_5415 297
274 3300046475 Ga0495639_0077361 Ga0495639_0077361_520_1440 297
275 3300046476 Ga0495662_0023458 Ga0495662_0023458_960_1880 297
276 3300046499 Ga0495594_0012048 Ga0495594_0012048_3088_4008 297
277 3300046529 Ga0495652_0033526 Ga0495652_0033526_2934_3854 297
278 3300046533 Ga0495640_0015681 Ga0495640_0015681_3793_4713 297
279 3300046559 Ga0495667_0015361 Ga0495667_0015361_2920_3840 297
280 3300046642 Ga0495634_0022644 Ga0495634_0022644_883_1803 297
281 3300046663 Ga0495635_0035030 Ga0495635_0035030_98_1018 297
282 3300046678 Ga0495599_0102971 Ga0495599_0102971_708_1628 297
283 3300046680 Ga0495646_0013473 Ga0495646_0013473_918_1838 297
284 3300047315 Ga0495581_0024272 Ga0495581_0024272_94_1014 297
285 3300047317 Ga0495604_0047934 Ga0495604_0047934_1946_2866 297
286 3300047321 Ga0495676_0014526 Ga0495676_0014526_4756_5676 297
287 3300053077 Ga0495601_0028563 Ga0495601_0028563_77_997 297
288 3300053084 Ga0495595_0050590 Ga0495595_0050590_195_1115 297
289 3300030745 Ga0316182_1334534 Ga0316182_13345342 299
290 3300042533 Ga0450901_000278 Ga0450901_000278_2618_3547 299
291 3300046558 Ga0495633_0000426 Ga0495633_0000426_37351_38280 299
292 3300048924 Ga0496121_0092722 Ga0496121_0092722_989_1924 299
293 3300001989 JGI24739J22299_10003734 JGI24739J22299_100037346 300
294 3300005330 Ga0070690_100185207 Ga0070690_1001852072 300
295 3300005334 Ga0068869_100020909 Ga0068869_1000209095 300
296 3300005338 Ga0068868_100029190 Ga0068868_1000291904 300
297 3300005340 Ga0070689_100139271 Ga0070689_1001392712 300
298 3300005347 Ga0070668_100166266 Ga0070668_1001662663 300
299 3300005617 Ga0068859_100081311 Ga0068859_1000813112 300
300 3300006931 Ga0097620_100081317 Ga0097620_1000813173 300
301 3300009545 Ga0105237_10046008 Ga0105237_100460082 300
302 3300025914 Ga0207671_10018251 Ga0207671_100182514 300
303 3300025936 Ga0207670_10118651 Ga0207670_101186511 300
304 3300025942 Ga0207689_10009778 Ga0207689_100097787 300
305 3300026118 Ga0207675_100115077 Ga0207675_1001150773 300
306 3300028794 Ga0307515_10203354 Ga0307515_102033541 300
307 3300048921 Ga0496118_0007619 Ga0496118_0007619_3425_4378 300
308 3300053087 Ga0500643_001864 Ga0500643_001864_6510_7439 300
309 3300053119 Ga0500595_008413 Ga0500595_008413_1003_1992 300
310 3300053730 Ga0500645_002849 Ga0500645_002849_2970_3905 300
311 iso_pu_bacteria 2513237098 2513678895 300
312 iso_pu_bacteria 2513237137 2513858840 300
313 iso_pu_bacteria 2775506904 2776282041 300
314 iso_pu_bacteria 2919073203 2919075276 300

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00126

HTH_1

Bacterial regulatory helix-turn-helix protein, lysR family

47

106

0.98

PF03466

LysR_substrate

LysR substrate binding domain

129

330

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
4pzj-assembly1.cif.gz_A-2 1.60 angstrom resolution crystal structure of a transcriptional regulator of the lysr family from eggerthella lenta dsm 2243 0.926 14 77
7trv-assembly1.cif.gz_A crystal structure of the dna-binding domain of the lysr family transcriptional regulator yfba from yersinia pestis 0.9054 12 95
6v7w-assembly1.cif.gz_B crystal structure of lasr-aqs1 complex from pseudomonas aeruginosa 0.9051 14 55
5z4z-assembly2.cif.gz_C-2 crystal structure of pacysb ntd domain with space group c2 0.9036 12 96
7x1k-assembly1.cif.gz_B crystal structure of the flagellar expression regulator degu from listeria monocytogenes 0.9006 10 55
ID Description Score Start End Superfamily
3fzvC01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9696 12 82 1.10.10.10
af_P37682_6_92_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9629 12 94 1.10.10.10
af_P0ACR4_1_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9583 11 90 1.10.10.10
af_P0ACR7_1_84_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9565 12 91 1.10.10.10
af_Q47141_1_83_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9563 12 92 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A850QN73-F1-model_v4 LysR family transcriptional regulator 0.947 104 294 GO:0003700
GO:0006351
GO:0043565
AF-H1S4I0-F1-model_v4 HTH-type transcriptional activator TtdR 0.9227 55 298
AF-U6ZXM9-F1-model_v4 deleted 0.919 134 296
AF-A0A7Y4T7C7-F1-model_v4 LysR family transcriptional regulator 0.9102 117 296 GO:0003700
GO:0006351
GO:0043565
AF-A0A376JFC9-F1-model_v4 deleted 0.9048 12 94

Feature Viewer

pLDDT pTM Quality
88.68 0.8 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map