F400799

General Info

Members Datasets Scaffolds Average Seq Length
310 231 620 434

Family's Representative Sequence

Representative Sequence 3300031995|Ga0307409_100020671|Ga0307409_1000206713
Length 465
Sequence LSGVPFRGAGAGAFRPAPVPGNTANLEGVPEINSLESQQNDPTFANVWQELKWRGLVHVSTDEAELEKLLAGAPVTYYCGFDPTAPSLHLGNLVQLLVMRRLQLAGHKPLGLVGGSTGLIGDPRPTAERTLNTKDTVAEWVGYLQAQVSRFLSFEGDNAARMVNNLDWTAPLSAIDFLREVGKHFRVGTMLRKDAVASRLNSDEGISYTEFSYQILQGMDYLQLYRDYRCMLQTGGSDQWGNLTSGTELIRKVEGKSVHALGTPLITNSDGTKFGKSEGNAIWLDAGMCSPYAFYQFWLNTADADVVDRLKVFTFLTRGEIEDIAAAVAERPFAREGQRKLAFEVTSLVHGVEATEKVIAASAALFGNGDLSALDKPTLQAATSELPSTTVQVDALGIVDLLVASGLSDSKSAARRTVGEGGAYVNNEKVLDPEAVIPESELLHGQYLLLRRGKKNLATVEVLVP

Samples

Sample ID Description Type Environment
1 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
2 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
3 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
4 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
5 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
6 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
7 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
8 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
9 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
10 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
11 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
12 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
13 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
14 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
15 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
16 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
17 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
18 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
19 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
20 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
21 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
27 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
28 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
29 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
30 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
31 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
35 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
36 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
37 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
38 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
42 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
45 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
46 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
47 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027717 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes) (version 2) Metagenome Rhizosphere
60 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
61 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
63 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
64 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
65 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
66 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
67 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
68 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
69 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
70 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
71 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
72 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
73 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
74 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
75 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
76 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
77 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
78 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
79 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
80 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
81 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
82 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
83 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
84 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
85 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
86 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
87 3300042121 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515D_E14_082716_2398 Metagenome Rhizosphere
88 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
89 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
90 3300042147 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_080116_2618 Metagenome Rhizosphere
91 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
92 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
93 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
94 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
95 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
96 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
97 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
98 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
99 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
100 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
101 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
102 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
103 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
104 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
105 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
106 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
107 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
108 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
109 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
110 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
111 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
112 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
113 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
114 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
115 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
116 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
117 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
118 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
119 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
120 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
121 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
122 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
123 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
124 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
125 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
126 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
127 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
128 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
129 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
130 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
131 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
132 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
133 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
134 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
135 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
136 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
137 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
138 3300049531 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
139 3300049537 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B12_A_3_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
140 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
145 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
150 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
151 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
152 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
153 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
154 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
155 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
156 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
157 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
158 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
159 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
160 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
161 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
162 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
163 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
164 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
165 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
166 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
167 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
168 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
169 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
170 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
171 3300059510 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 55R_CD_T2_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
172 2554235227 Arthrobacter sp. PAO19 Isolate Rhizosphere
173 2643221619 Agromyces sp. Root81 Isolate Unclassified
174 2643221649 Leifsonia sp. Root4 Isolate Unclassified
175 2690315906 Arthrobacter sp. OY3WO11 Isolate Unclassified
176 2731639228 Motilibacter peucedani DSM 45328 Isolate Rhizosphere
177 2773857759 Microbacterium sp. 1294 Isolate Unclassified
178 2775506735 Arthrobacter sp. S95 1704 Isolate Unclassified
179 2799112218 Motilibacter rhizosphaerae DSM 45622 Isolate Rhizosphere
180 2808606357 Arthrobacter sp. SLBN-122 Isolate Unclassified
181 2808606360 Arthrobacter sp. SLBN-112 Isolate Unclassified
182 2808606366 Arthrobacter sp. SLBN-83 Isolate Unclassified
183 2808606370 Arthrobacter sp. SLBN-100 Isolate Unclassified
184 2808606371 Arthrobacter sp. SLBN-53 Isolate Unclassified
185 2808606372 Agromyces sp. 23-23 Isolate Unclassified
186 2811994871 Arthrobacter sp. SLBN-179 Isolate Unclassified
187 2844841374 Leifsonia soli DSM 23871 Isolate Rhizosphere
188 2844849076 Arthrobacter cupressi DSM 24664 Isolate Rhizosphere
189 2857479173 Micrococcus sp. R-74225 Isolate Unclassified
190 2857632687 Micrococcus sp. R-73081 Isolate Unclassified
191 2857740372 Paenarthrobacter sp. R-74611 Isolate Unclassified
192 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
193 2870804320 Micrococcus yunnanensis DSM 21948 Isolate Unclassified
194 2897561785 Pseudoclavibacter endophyticus EGI 60007 Isolate Unclassified
195 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
196 2904497146 Arthrobacter sp. 1276 Isolate Rhizosphere
197 2904776348 Paenarthrobacter sp. 1092 Isolate Rhizosphere
198 2910809715 Paenarthrobacter sp. CM16 Isolate Unclassified
199 2919034639 Paenarthrobacter nitroguajacolicus 247 Isolate Rhizosphere
200 2919051321 Sinomonas atrocyanea 1003 Isolate Rhizosphere
201 2919055335 Leifsonia sp. 1010 Isolate Rhizosphere
202 2919059106 Arthrobacter sp. 1088 Isolate Rhizosphere
203 2919391150 Arthrobacter ipis 2973 Isolate Unclassified
204 2919523602 Leifsonia shinshuensis 3821 Isolate Unclassified
205 2919538618 Paenarthrobacter nitroguajacolicus 3945 Isolate Unclassified
206 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
207 2928153084 Leifsonia sp. 563 Isolate Unclassified
208 2932426870 Paenarthrobacter sp. 4246 Isolate Rhizosphere
209 2933418574 Jeotgalibacillus campisalis 4120 Isolate Rhizosphere
210 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
211 2939647034 Arthrobacter sp. 2762 Isolate Rhizosphere
212 2939674588 Arthrobacter bambusae 3552 Isolate Rhizosphere
213 2945916053 Arthrobacter ulcerisalmonis W1I2 Isolate Rhizosphere
214 2945920336 Pseudarthrobacter siccitolerans W1I3 Isolate Rhizosphere
215 2945941187 Arthrobacter pascens W1I14 Isolate Rhizosphere
216 2945956166 Arthrobacter globiformus W2I3 Isolate Rhizosphere
217 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere
218 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
219 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
220 2946037020 Arthrobacter sp. W4I7 Isolate Rhizosphere
221 2946059875 Arthrobacter sp. SLBN-112 Isolate Rhizosphere
222 2953998280 Pseudarthrobacter sp. W1I19 Isolate Rhizosphere
223 2966921586 Rathayibacter agropyri 617 Isolate Rhizosphere
224 2974302888 Pseudarthrobacter sp. SORGH_AS 212 Isolate Unclassified
225 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
226 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
227 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
228 8054107350 Arthrobacter rhizosphaerae CCNWLXL 1-35 Isolate Rhizosphere
229 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere
230 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere
231 8057345674 Herbiconiux aconitum CPCC 205763 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 78.39
Metatranscriptomes 2.26
Isolates 19.35

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.06
Nodule 0
Rhizoplane 4.19
Rhizosphere 73.87
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307409_100020671 3300031995 Bacteria 4492
2 LJQas_1000680 3300000549 Bacteria 5436
3 JGI24740J21852_10033343 3300001979 Bacteria 1636
4 JGI24739J22299_10033371 3300001989 Bacteria 1761
5 JGI24737J22298_10022885 3300001990 Bacteria 1984
6 JGI25152J39213_1002393 3300002773 Bacteria 7182
7 rootH1_10037231 3300003323 Bacteria 2957
8 Ga0006562J51391_1038337 3300003578 Bacteria 26740
9 Ga0006562J51391_1038338 3300003578 Bacteria 23521
10 Ga0055539_1000027 3300003752 Bacteria 258020
11 Ga0055533_1000020 3300003756 Bacteria 353998
12 Ga0055525_1000391 3300003759 Bacteria 28026
13 Ga0065714_10009262 3300005288 Bacteria 2935
14 Ga0070670_100053728 3300005331 Bacteria 3459
15 Ga0070668_100075750 3300005347 Bacteria 2627
16 Ga0070669_100179197 3300005353 Bacteria 1657
17 Ga0070675_100084390 3300005354 Bacteria 2653
18 Ga0070705_100012848 3300005440 Bacteria 4270
19 Ga0070678_100087842 3300005456 Bacteria 2375
20 Ga0070698_100030558 3300005471 Bacteria 5584
21 Ga0070698_100247255 3300005471 Bacteria 1716
22 Ga0070672_100054848 3300005543 Bacteria 3121
23 Ga0070696_100013491 3300005546 Bacteria 5483
24 Ga0070665_100199902 3300005548 Bacteria 1999
25 Ga0081455_10011623 3300005937 Bacteria 8833
26 Ga0075430_100076044 3300006846 Bacteria 2814
27 Ga0075431_100013141 3300006847 Bacteria 8366
28 Ga0105251_10045824 3300009011 Bacteria 2107
29 Ga0105244_10004000 3300009036 Bacteria 10314
30 Ga0105243_10034084 3300009148 Bacteria 3939
31 Ga0105246_10040055 3300011119 Bacteria 3160
32 Ga0105246_10058574 3300011119 Bacteria 2669
33 Ga0105246_10116622 3300011119 Bacteria 1971
34 Ga0157373_10096168 3300013100 Bacteria 2085
35 Ga0157371_10027986 3300013102 Bacteria 4084
36 Ga0157370_10055771 3300013104 Bacteria 3762
37 Ga0157369_10018498 3300013105 Bacteria 7811
38 Ga0157369_10067202 3300013105 Bacteria 3854
39 Ga0157369_10097369 3300013105 Bacteria 3138
40 Ga0163162_10113490 3300013306 Bacteria 2808
41 Ga0157380_10033390 3300014326 Bacteria 3962
42 Ga0157377_10070344 3300014745 Bacteria 2021
43 Ga0206353_10384906 3300020082 Bacteria 16797
44 Ga0209566_100366 3300025225 Bacteria 37636
45 Ga0209674_100001 3300025226 Bacteria 4013750
46 Ga0209563_100001 3300025230 Bacteria 4013775
47 Ga0209563_100323 3300025230 Bacteria 18797
48 Ga0207425_1016283 3300025245 Bacteria 1652
49 Ga0209677_100001 3300025253 Bacteria 4013787
50 Ga0209677_100957 3300025253 Bacteria 14044
51 Ga0209148_1003565 3300025254 Bacteria 4215
52 Ga0209129_1000079 3300025258 Bacteria 187308
53 Ga0209455_1005069 3300025272 Bacteria 4160
54 Ga0209025_1001940 3300025294 Bacteria 23871
55 Ga0207697_10063736 3300025315 Bacteria 1536
56 Ga0207655_1029030 3300025728 Bacteria 2598
57 Ga0207645_10027624 3300025907 Bacteria 3663
58 Ga0207705_10069662 3300025909 Bacteria 2548
59 Ga0207681_10047241 3300025923 Bacteria 2899
60 Ga0207650_10051101 3300025925 Bacteria 3058
61 Ga0207669_10050015 3300025937 Bacteria 2496
62 Ga0207691_10001332 3300025940 Bacteria 24657
63 Ga0207708_10241153 3300026075 Bacteria 1454
64 Ga0207675_100133622 3300026118 Bacteria 2353
65 Ga0207683_10019473 3300026121 Bacteria 5795
66 Ga0209966_1001291 3300027695 Bacteria 4437
67 Ga0209998_10000068 3300027717 Bacteria 41101
68 Ga0207428_10013458 3300027907 Bacteria 7148
69 Ga0207428_10018708 3300027907 Bacteria 5912
70 Ga0268265_10303355 3300028380 Bacteria 1439
71 Ga0307408_100001636 3300031548 Bacteria 16551
72 Ga0307408_100057286 3300031548 Bacteria 2828
73 Ga0307408_100058539 3300031548 Bacteria 2801
74 Ga0307408_100097258 3300031548 Bacteria 2236
75 Ga0307408_100111354 3300031548 Bacteria 2103
76 Ga0307405_10036538 3300031731 Bacteria 2944
77 Ga0307405_10092468 3300031731 Bacteria 2007
78 Ga0307405_10115490 3300031731 Bacteria 1826
79 Ga0307413_10019426 3300031824 Bacteria 3591
80 Ga0307413_10022990 3300031824 Bacteria 3371
81 Ga0307413_10068920 3300031824 Bacteria 2218
82 Ga0307410_10032822 3300031852 Bacteria 3346
83 Ga0307410_10075389 3300031852 Bacteria 2351
84 Ga0307410_10079141 3300031852 Bacteria 2302
85 Ga0307410_10159356 3300031852 Bacteria 1689
86 Ga0307410_10163028 3300031852 Bacteria 1672
87 Ga0307407_10018836 3300031903 Bacteria 3502
88 Ga0307407_10050680 3300031903 Bacteria 2376
89 Ga0307412_10000960 3300031911 Bacteria 16491
90 Ga0307412_10034435 3300031911 Bacteria 3228
91 Ga0307409_100133681 3300031995 Bacteria 2124
92 Ga0307416_100007843 3300032002 Bacteria 6824
93 Ga0307416_100039640 3300032002 Bacteria 3650
94 Ga0307416_100182224 3300032002 Bacteria 1969
95 Ga0307416_100184370 3300032002 Bacteria 1960
96 Ga0307414_10127442 3300032004 Bacteria 1969
97 Ga0307415_100043088 3300032126 Bacteria 3008
98 Ga0307415_100164783 3300032126 Bacteria 1722
99 Ga0395899_0024758 3300037312 Bacteria 4536
100 Ga0395899_0035414 3300037312 Bacteria 3747
101 Ga0395899_0082308 3300037312 Bacteria 2341
102 Ga0395900_0095030 3300037418 Bacteria 3062
103 Ga0395898_0000098 3300037466 Bacteria 229806
104 Ga0395898_0082592 3300037466 Bacteria 3097
105 Ga0395905_0287415 3300037471 Bacteria 1531
106 Ga0395901_0237119 3300038443 Bacteria 1903
107 Ga0395901_0304976 3300038443 Bacteria 1650
108 Ga0395901_0378514 3300038443 Bacteria 1457
109 Ga0439436_0001839 3300041404 Bacteria 6261
110 Ga0439436_0022289 3300041404 Bacteria 1877
111 Ga0439438_010623 3300041405 Bacteria 2901
112 Ga0439439_0013652 3300041406 Bacteria 1970
113 Ga0439439_0015889 3300041406 Bacteria 1840
114 Ga0439466_0020690 3300041411 Bacteria 2343
115 Ga0439433_0001759 3300041999 Bacteria 4501
116 Ga0439442_000124 3300042002 Bacteria 19456
117 Ga0439442_000496 3300042002 Bacteria 8890
118 Ga0439442_002702 3300042002 Bacteria 3481
119 Ga0439442_007414 3300042002 Bacteria 2204
120 Ga0439432_002952 3300042006 Bacteria 6338
121 Ga0439449_0004506 3300042007 Bacteria 5380
122 Ga0439449_0033309 3300042007 Bacteria 1919
123 Ga0439452_004413 3300042010 Bacteria 4724
124 Ga0439457_001947 3300042014 Bacteria 6075
125 Ga0439457_014058 3300042014 Bacteria 1795
126 Ga0439462_0007026 3300042015 Bacteria 2813
127 Ga0450919_000429 3300042121 Bacteria 5181
128 Ga0450920_002371 3300042122 Bacteria 3198
129 Ga0450907_000892 3300042146 Bacteria 7141
130 Ga0450910_004913 3300042147 Bacteria 1817
131 Ga0450908_001639 3300042184 Bacteria 4356
132 Ga0450909_001588 3300042185 Bacteria 3171
133 Ga0439434_0012555 3300042435 Bacteria 2506
134 Ga0439434_0014475 3300042435 Bacteria 2346
135 Ga0450918_003089 3300042531 Bacteria 3111
136 Ga0450918_008540 3300042531 Bacteria 1798
137 Ga0466972_0012869 3300044658 Bacteria 4202
138 Ga0466972_0013857 3300044658 Bacteria 4046
139 Ga0466966_0021866 3300044684 Bacteria 4199
140 Ga0466966_0117081 3300044684 Bacteria 1639
141 Ga0466961_0011993 3300044693 Bacteria 5540
142 Ga0466961_0020097 3300044693 Bacteria 4298
143 Ga0466968_0024413 3300044735 Bacteria 2469
144 Ga0466970_0004775 3300044765 Bacteria 6693
145 Ga0466970_0020861 3300044765 Bacteria 3409
146 Ga0466957_0058992 3300044842 Bacteria 2352
147 Ga0495629_0057370 3300046459 Bacteria 2723
148 Ga0495580_0012214 3300046472 Bacteria 6597
149 Ga0495580_0162643 3300046472 Bacteria 1544
150 Ga0495639_0003401 3300046475 Bacteria 6893
151 Ga0495631_0052350 3300046518 Bacteria 1783
152 Ga0495663_0026834 3300046525 Bacteria 1688
153 Ga0495665_0001563 3300046531 Bacteria 12226
154 Ga0495586_0024880 3300046535 Bacteria 3201
155 Ga0495586_0050470 3300046535 Bacteria 2251
156 Ga0495587_0075692 3300046536 Bacteria 1954
157 Ga0495656_0011401 3300046615 Bacteria 3262
158 Ga0495659_0033119 3300046664 Bacteria 1812
159 Ga0495588_0037090 3300046674 Bacteria 2475
160 Ga0495588_0039278 3300046674 Bacteria 2410
161 Ga0495623_0021102 3300046679 Bacteria 4208
162 Ga0495613_0086177 3300046689 Bacteria 2278
163 Ga0495670_0066898 3300046691 Bacteria 1813
164 Ga0495581_0047232 3300047315 Bacteria 2488
165 Ga0495581_0078563 3300047315 Bacteria 1909
166 Ga0495686_0110824 3300047472 Bacteria 1646
167 Ga0496101_0037955 3300048904 Bacteria 3419
168 Ga0496102_0285556 3300048905 Bacteria 1555
169 Ga0496105_0046238 3300048908 Bacteria 3593
170 Ga0496107_0028933 3300048910 Bacteria 3940
171 Ga0496108_0215961 3300048911 Bacteria 1665
172 Ga0496109_0114660 3300048912 Bacteria 2507
173 Ga0496111_0086358 3300048914 Bacteria 2295
174 Ga0496112_0270837 3300048915 Bacteria 1646
175 Ga0496113_0146040 3300048916 Bacteria 1863
176 Ga0496114_0126600 3300048917 Bacteria 2202
177 Ga0496115_0082825 3300048918 Bacteria 2614
178 Ga0496115_0111126 3300048918 Bacteria 2251
179 Ga0496115_0167189 3300048918 Bacteria 1819
180 Ga0496117_0002355 3300048920 Bacteria 24155
181 Ga0496117_0084842 3300048920 Bacteria 2065
182 Ga0496118_0015232 3300048921 Bacteria 7134
183 Ga0496119_0003406 3300048922 Bacteria 16517
184 Ga0496119_0068065 3300048922 Bacteria 2098
185 Ga0496120_0000975 3300048923 Bacteria 38985
186 Ga0496122_0000055 3300048925 Bacteria 258485
187 Ga0496122_0008820 3300048925 Bacteria 10769
188 Ga0496123_0002201 3300048926 Bacteria 24786
189 Ga0496123_0009396 3300048926 Bacteria 8810
190 Ga0496124_0012726 3300048927 Bacteria 8273
191 Ga0496125_0001414 3300048928 Bacteria 35032
192 Ga0496126_0012809 3300048929 Bacteria 8571
193 Ga0496126_0027059 3300048929 Bacteria 5487
194 Ga0501306_001821 3300049127 Bacteria 2080
195 Ga0501315_001794 3300049531 Bacteria 1914
196 Ga0501321_001122 3300049537 Bacteria 2039
197 Ga0501031_0056147 3300049568 Bacteria 2565
198 Ga0501032_0001836 3300049569 Bacteria 16790
199 Ga0501032_0014563 3300049569 Bacteria 5569
200 Ga0501032_0069438 3300049569 Bacteria 2351
201 Ga0501033_0049945 3300049570 Bacteria 3104
202 Ga0501033_0053450 3300049570 Bacteria 2991
203 Ga0501033_0062163 3300049570 Bacteria 2750
204 Ga0501034_0000015 3300049571 Bacteria 296163
205 Ga0501034_0008490 3300049571 Bacteria 10848
206 Ga0501034_0024697 3300049571 Bacteria 6113
207 Ga0501034_0057678 3300049571 Bacteria 3904
208 Ga0501034_0087742 3300049571 Bacteria 3110
209 Ga0501034_0114360 3300049571 Bacteria 2687
210 Ga0501034_0173666 3300049571 Bacteria 2121
211 Ga0501036_0237056 3300049572 Bacteria 1530
212 Ga0501037_0033690 3300049573 Bacteria 3782
213 Ga0501037_0060705 3300049573 Bacteria 2758
214 Ga0501037_0078162 3300049573 Bacteria 2401
215 Ga0501038_0035408 3300049574 Bacteria 4383
216 Ga0501038_0078068 3300049574 Bacteria 2794
217 Ga0501039_0156567 3300049575 Bacteria 1790
218 Ga0501043_0064639 3300049579 Bacteria 2873
219 Ga0501046_0060127 3300049580 Bacteria 2974
220 Ga0501046_0069835 3300049580 Bacteria 2732
221 Ga0501047_0156897 3300049581 Bacteria 2149
222 Ga0501047_0165062 3300049581 Bacteria 2085
223 Ga0501048_0002880 3300049582 Bacteria 13123
224 Ga0501070_0013310 3300049586 Bacteria 6938
225 Ga0501070_0102520 3300049586 Bacteria 2367
226 Ga0501073_0036296 3300049589 Bacteria 3502
227 Ga0501080_0006153 3300049742 Bacteria 10769
228 Ga0501035_0062319 3300049822 Bacteria 3318
229 Ga0501044_0021124 3300049823 Bacteria 6950
230 Ga0501044_0075778 3300049823 Bacteria 3415
231 Ga0501044_0111199 3300049823 Bacteria 2747
232 Ga0501044_0114942 3300049823 Bacteria 2696
233 Ga0501045_0063817 3300049824 Bacteria 2703
234 nmdc:mga05p37_10290_c1 3300050507 Bacteria 11108
235 nmdc:mga09592_1127_c1 3300050508 Bacteria 21249
236 nmdc:mga0qj67_88340_c1 3300050509 Bacteria 2489
237 nmdc:mga06r32_5651_c1 3300050510 Bacteria 11252
238 nmdc:mga08y16_26863_c1 3300050511 Bacteria 6067
239 Ga0495655_0001980 3300053083 Bacteria 3204
240 Ga0500643_000189 3300053087 Bacteria 58813
241 Ga0500556_0000062 3300053104 Bacteria 110818
242 Ga0500559_0001394 3300053136 Bacteria 13754
243 Ga0500568_0000060 3300053139 Bacteria 107901
244 Ga0500573_0000007 3300053140 Bacteria 272970
245 Ga0500573_0008253 3300053140 Bacteria 5732
246 Ga0500573_0025659 3300053140 Bacteria 3389
247 Ga0500577_0016661 3300053142 Bacteria 2322
248 Ga0500577_0019792 3300053142 Bacteria 2189
249 Ga0500616_0000463 3300053153 Bacteria 52811
250 Ga0587090_000223 3300059510 Bacteria 4150
251 2555230563 2554235227 Bacteria 3637389
252 2644113906 2643221619 Bacteria 4158469
253 2644280524 2643221649 Bacteria 3867359
254 2691513507 2690315906 Bacteria 4517044
255 2731907036 2731639228 Bacteria 4187555
256 2774383428 2773857759 Bacteria 2963774
257 2775658847 2775506735 Bacteria 4556596
258 2799183909 2799112218 Bacteria 4315149
259 2808830759 2808606357 Bacteria 4466944
260 2808851948 2808606360 Bacteria 4404006
261 2808879740 2808606366 Bacteria 4415912
262 2808890692 2808606370 Bacteria 4942454
263 2808895972 2808606371 Bacteria 4251511
264 2808902550 2808606372 Bacteria 4649509
265 2812321686 2811994871 Bacteria 4497550
266 2844841632 2844841374 Bacteria 3917147
267 2844852314 2844849076 Bacteria 4091819
268 2857481417 2857479173 Bacteria 2469263
269 2857634881 2857632687 Bacteria 2448521
270 2857743810 2857740372 Bacteria 4782044
271 2870622741 2870622029 Bacteria 3643329
272 2870806583 2870804320 Bacteria 2552467
273 2897564755 2897561785 Bacteria 3256946
274 2904431480 2904430863 Bacteria 3486923
275 2904499709 2904497146 Bacteria 4731781
276 2904780366 2904776348 Bacteria 4658726
277 2910814866 2910809715 Bacteria 4982797
278 2919036162 2919034639 Bacteria 4763403
279 2919053161 2919051321 Bacteria 4210889
280 2919057293 2919055335 Bacteria 3875751
281 2919060877 2919059106 Bacteria 4991624
282 2919392444 2919391150 Bacteria 4884741
283 2919523636 2919523602 Bacteria 3788128
284 2919538619 2919538618 Bacteria 4677069
285 2928124602 2928121344 Bacteria 3972376
286 2928155064 2928153084 Bacteria 4020257
287 2932431109 2932426870 Bacteria 4547726
288 2933419219 2933418574 Bacteria 4476724
289 2939600074 2939598168 Bacteria 4687164
290 2939647862 2939647034 Bacteria 4681660
291 2939679076 2939674588 Bacteria 4844420
292 2945919556 2945916053 Bacteria 4555517
293 2945924533 2945920336 Bacteria 4501603
294 2945943730 2945941187 Bacteria 4682474
295 2945958080 2945956166 Bacteria 5110334
296 2946004078 2946003308 Bacteria 3857229
297 2946025308 2946024296 Bacteria 3508095
298 2946037012 2946033335 Bacteria 3835514
299 2946039700 2946037020 Bacteria 4900426
300 2946063278 2946059875 Bacteria 4386623
301 2954000924 2953998280 Bacteria 4812144
302 2966923873 2966921586 Bacteria 3092803
303 2974303200 2974302888 Bacteria 4369871
304 2977253617 2977251589 Bacteria 2952848
305 2977266135 2977264416 Bacteria 3750737
306 8002813647 8002811521 Bacteria 2942897
307 8054110011 8054107350 Bacteria 5022511
308 8055035094 8055034563 Bacteria 3562128
309 8055039226 8055037949 Bacteria 3337834
310 8057349521 8057345674 Bacteria 4160394
311 Ga0307409_100020671
312 LJQas_1000680
313 JGI24740J21852_10033343
314 JGI24739J22299_10033371
315 JGI24737J22298_10022885
316 JGI25152J39213_1002393
317 rootH1_10037231
318 Ga0006562J51391_1038337
319 Ga0006562J51391_1038338
320 Ga0055539_1000027
321 Ga0055533_1000020
322 Ga0055525_1000391
323 Ga0065714_10009262
324 Ga0070670_100053728
325 Ga0070668_100075750
326 Ga0070669_100179197
327 Ga0070675_100084390
328 Ga0070705_100012848
329 Ga0070678_100087842
330 Ga0070698_100030558
331 Ga0070698_100247255
332 Ga0070672_100054848
333 Ga0070696_100013491
334 Ga0070665_100199902
335 Ga0081455_10011623
336 Ga0075430_100076044
337 Ga0075431_100013141
338 Ga0105251_10045824
339 Ga0105244_10004000
340 Ga0105243_10034084
341 Ga0105246_10040055
342 Ga0105246_10058574
343 Ga0105246_10116622
344 Ga0157373_10096168
345 Ga0157371_10027986
346 Ga0157370_10055771
347 Ga0157369_10018498
348 Ga0157369_10067202
349 Ga0157369_10097369
350 Ga0163162_10113490
351 Ga0157380_10033390
352 Ga0157377_10070344
353 Ga0206353_10384906
354 Ga0209566_100366
355 Ga0209674_100001
356 Ga0209563_100001
357 Ga0209563_100323
358 Ga0207425_1016283
359 Ga0209677_100001
360 Ga0209677_100957
361 Ga0209148_1003565
362 Ga0209129_1000079
363 Ga0209455_1005069
364 Ga0209025_1001940
365 Ga0207697_10063736
366 Ga0207655_1029030
367 Ga0207645_10027624
368 Ga0207705_10069662
369 Ga0207681_10047241
370 Ga0207650_10051101
371 Ga0207669_10050015
372 Ga0207691_10001332
373 Ga0207708_10241153
374 Ga0207675_100133622
375 Ga0207683_10019473
376 Ga0209966_1001291
377 Ga0209998_10000068
378 Ga0207428_10013458
379 Ga0207428_10018708
380 Ga0268265_10303355
381 Ga0307408_100001636
382 Ga0307408_100057286
383 Ga0307408_100058539
384 Ga0307408_100097258
385 Ga0307408_100111354
386 Ga0307405_10036538
387 Ga0307405_10092468
388 Ga0307405_10115490
389 Ga0307413_10019426
390 Ga0307413_10022990
391 Ga0307413_10068920
392 Ga0307410_10032822
393 Ga0307410_10075389
394 Ga0307410_10079141
395 Ga0307410_10159356
396 Ga0307410_10163028
397 Ga0307407_10018836
398 Ga0307407_10050680
399 Ga0307412_10000960
400 Ga0307412_10034435
401 Ga0307409_100133681
402 Ga0307416_100007843
403 Ga0307416_100039640
404 Ga0307416_100182224
405 Ga0307416_100184370
406 Ga0307414_10127442
407 Ga0307415_100043088
408 Ga0307415_100164783
409 Ga0395899_0024758
410 Ga0395899_0035414
411 Ga0395899_0082308
412 Ga0395900_0095030
413 Ga0395898_0000098
414 Ga0395898_0082592
415 Ga0395905_0287415
416 Ga0395901_0237119
417 Ga0395901_0304976
418 Ga0395901_0378514
419 Ga0439436_0001839
420 Ga0439436_0022289
421 Ga0439438_010623
422 Ga0439439_0013652
423 Ga0439439_0015889
424 Ga0439466_0020690
425 Ga0439433_0001759
426 Ga0439442_000124
427 Ga0439442_000496
428 Ga0439442_002702
429 Ga0439442_007414
430 Ga0439432_002952
431 Ga0439449_0004506
432 Ga0439449_0033309
433 Ga0439452_004413
434 Ga0439457_001947
435 Ga0439457_014058
436 Ga0439462_0007026
437 Ga0450919_000429
438 Ga0450920_002371
439 Ga0450907_000892
440 Ga0450910_004913
441 Ga0450908_001639
442 Ga0450909_001588
443 Ga0439434_0012555
444 Ga0439434_0014475
445 Ga0450918_003089
446 Ga0450918_008540
447 Ga0466972_0012869
448 Ga0466972_0013857
449 Ga0466966_0021866
450 Ga0466966_0117081
451 Ga0466961_0011993
452 Ga0466961_0020097
453 Ga0466968_0024413
454 Ga0466970_0004775
455 Ga0466970_0020861
456 Ga0466957_0058992
457 Ga0495629_0057370
458 Ga0495580_0012214
459 Ga0495580_0162643
460 Ga0495639_0003401
461 Ga0495631_0052350
462 Ga0495663_0026834
463 Ga0495665_0001563
464 Ga0495586_0024880
465 Ga0495586_0050470
466 Ga0495587_0075692
467 Ga0495656_0011401
468 Ga0495659_0033119
469 Ga0495588_0037090
470 Ga0495588_0039278
471 Ga0495623_0021102
472 Ga0495613_0086177
473 Ga0495670_0066898
474 Ga0495581_0047232
475 Ga0495581_0078563
476 Ga0495686_0110824
477 Ga0496101_0037955
478 Ga0496102_0285556
479 Ga0496105_0046238
480 Ga0496107_0028933
481 Ga0496108_0215961
482 Ga0496109_0114660
483 Ga0496111_0086358
484 Ga0496112_0270837
485 Ga0496113_0146040
486 Ga0496114_0126600
487 Ga0496115_0082825
488 Ga0496115_0111126
489 Ga0496115_0167189
490 Ga0496117_0002355
491 Ga0496117_0084842
492 Ga0496118_0015232
493 Ga0496119_0003406
494 Ga0496119_0068065
495 Ga0496120_0000975
496 Ga0496122_0000055
497 Ga0496122_0008820
498 Ga0496123_0002201
499 Ga0496123_0009396
500 Ga0496124_0012726
501 Ga0496125_0001414
502 Ga0496126_0012809
503 Ga0496126_0027059
504 Ga0501306_001821
505 Ga0501315_001794
506 Ga0501321_001122
507 Ga0501031_0056147
508 Ga0501032_0001836
509 Ga0501032_0014563
510 Ga0501032_0069438
511 Ga0501033_0049945
512 Ga0501033_0053450
513 Ga0501033_0062163
514 Ga0501034_0000015
515 Ga0501034_0008490
516 Ga0501034_0024697
517 Ga0501034_0057678
518 Ga0501034_0087742
519 Ga0501034_0114360
520 Ga0501034_0173666
521 Ga0501036_0237056
522 Ga0501037_0033690
523 Ga0501037_0060705
524 Ga0501037_0078162
525 Ga0501038_0035408
526 Ga0501038_0078068
527 Ga0501039_0156567
528 Ga0501043_0064639
529 Ga0501046_0060127
530 Ga0501046_0069835
531 Ga0501047_0156897
532 Ga0501047_0165062
533 Ga0501048_0002880
534 Ga0501070_0013310
535 Ga0501070_0102520
536 Ga0501073_0036296
537 Ga0501080_0006153
538 Ga0501035_0062319
539 Ga0501044_0021124
540 Ga0501044_0075778
541 Ga0501044_0111199
542 Ga0501044_0114942
543 Ga0501045_0063817
544 nmdc:mga05p37_10290_c1
545 nmdc:mga09592_1127_c1
546 nmdc:mga0qj67_88340_c1
547 nmdc:mga06r32_5651_c1
548 nmdc:mga08y16_26863_c1
549 Ga0495655_0001980
550 Ga0500643_000189
551 Ga0500556_0000062
552 Ga0500559_0001394
553 Ga0500568_0000060
554 Ga0500573_0000007
555 Ga0500573_0008253
556 Ga0500573_0025659
557 Ga0500577_0016661
558 Ga0500577_0019792
559 Ga0500616_0000463
560 Ga0587090_000223
561 2555230563
562 2644113906
563 2644280524
564 2691513507
565 2731907036
566 2774383428
567 2775658847
568 2799183909
569 2808830759
570 2808851948
571 2808879740
572 2808890692
573 2808895972
574 2808902550
575 2812321686
576 2844841632
577 2844852314
578 2857481417
579 2857634881
580 2857743810
581 2870622741
582 2870806583
583 2897564755
584 2904431480
585 2904499709
586 2904780366
587 2910814866
588 2919036162
589 2919053161
590 2919057293
591 2919060877
592 2919392444
593 2919523636
594 2919538619
595 2928124602
596 2928155064
597 2932431109
598 2933419219
599 2939600074
600 2939647862
601 2939679076
602 2945919556
603 2945924533
604 2945943730
605 2945958080
606 2946004078
607 2946025308
608 2946037012
609 2946039700
610 2946063278
611 2954000924
612 2966923873
613 2974303200
614 2977253617
615 2977266135
616 8002813647
617 8054110011
618 8055035094
619 8055039226
620 8057349521

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00579

tRNA-synt_1b

tRNA synthetases class I (W and Y)

70

367

0.98

PF22421

SYY_C-terminal

Tyrosine--tRNA ligase SYY-like C-terminal domain

378

460

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
2ts1-assembly1.cif.gz_A structure of tyrosyl-t/rna synthetase refined at 2.3 angstroms resolution. interaction of the enzyme with the tyrosyl adenylate intermediate 0.915 19 331
1tya-assembly1.cif.gz_E-2 structural analysis of a series of mutants of tyrosyl-trna synthetase: enhancement of catalysis by hydrophobic interactions 0.9141 19 331
1tyd-assembly1.cif.gz_E-2 structure of tyrosyl-trna synthetase refined at 2.3 angstroms resolution. interaction of the enzyme with the tyrosyl adenylate intermediate 0.9139 19 331
2jan-assembly2.cif.gz_B tyrosyl-trna synthetase from mycobacterium tuberculosis in unliganded state 0.9135 21 434
6wn2-assembly1.cif.gz_B tyrosyl t-rna synthetase mutant from e.coli complexed with sulfotyrosine 0.9134 18 331
ID Description Score Start End Superfamily
2pidA02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9659 255 334 1.10.240.10
2pidB02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9649 255 334 1.10.240.10
3zxiB02 Mainly Alpha;Orthogonal Bundle;Tyrosyl-Transfer RNA Synthetase;Tyrosyl-Transfer RNA Synthetase 0.9575 255 331 1.10.240.10
2janC03 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9494 338 436 3.10.290.10
af_P0AGJ9_333_424_3.10.290.10 Alpha Beta;Roll;Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A;RNA-binding S4 domain 0.9379 345 434 3.10.290.10
ID Description Score Start End GO Terms
AF-A0A3L7LTY5-F1-model_v4 Tyrosine--tRNA ligase 0.9658 357 434 GO:0003723
GO:0016874
AF-A0A378B2Y2-F1-model_v4 Tyrosyl-tRNA synthetase (EC 6.1.1.1) 0.9656 362 434 GO:0003723
GO:0004831
AF-A0A1F0D4K0-F1-model_v4 deleted 0.9511 7 434
AF-A0A2S9BX22-F1-model_v4 deleted 0.9508 10 436
AF-A0A1X3P7P6-F1-model_v4 Tyrosine--tRNA ligase (EC 6.1.1.1) (Tyrosyl-tRNA synthetase) (TyrRS) 0.9506 7 437 GO:0003723
GO:0004831
GO:0005524
GO:0005829
GO:0006437

Map