F399818

General Info

Members Datasets Scaffolds Average Seq Length
308 208 616 214

Family's Representative Sequence

Representative Sequence 3300044901|Ga0466960_0198077|Ga0466960_0198077_259_984
Length 241
Sequence MHQQERSSVTSPVVAAVREGGSAAQAELLERLRAGDRDAFAELVDAWSPVLLRVALLHVSTRASAEEVVQDTWLAVIGQLDRFEGRSSLKTWVYRILVNAAKQRGTKEGRTLPLSSLPARADTGPTVDPDRFRGPDDPYPGDWRVYPKPWVMPSPEQAMLAGEIRTEMAAALAGLPDRQRIVITLRDIEGHTTAEVCEILEITPVYQRVLLHRARAFVRGKLEEYFSASGDAPEAGNGTVP

Samples

Sample ID Description Type Environment
1 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
2 3300002075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
12 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
13 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
14 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
15 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
16 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
17 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
18 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
19 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
20 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
21 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
22 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
23 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
24 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
25 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
26 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
27 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
28 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
29 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
30 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
31 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
32 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
33 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
34 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
35 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
36 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
37 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
38 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
39 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
40 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
41 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
42 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
43 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
44 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
45 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
46 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
47 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
48 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
49 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
50 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
51 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
52 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
53 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
54 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
55 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
56 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
57 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
58 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
59 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
60 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
61 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
62 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
63 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
64 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
65 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
66 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
67 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
68 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
69 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
70 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
71 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
72 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
73 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
74 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
75 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
76 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
77 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
78 3300012503 Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R Metagenome Rhizosphere
79 3300012506 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610 Metagenome Rhizosphere
80 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
81 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
82 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
83 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
84 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
85 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
86 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
87 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
88 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
89 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
90 3300025315 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
111 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
114 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
119 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
120 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
121 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
122 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
123 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
124 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
125 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
126 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
127 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
128 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
129 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
130 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
131 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
132 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
133 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
134 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
135 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
136 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
137 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
138 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
139 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
140 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
141 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
142 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
143 3300042003 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821FE14Z081617_5551 Metagenome Rhizosphere
144 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
145 3300042011 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z062817_5204 Metagenome Rhizosphere
146 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
147 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
148 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
149 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
150 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
151 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
152 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
153 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
154 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
155 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
156 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
157 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
158 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
159 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
160 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
161 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
162 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
163 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
164 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
165 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
166 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
167 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
168 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
169 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
170 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
171 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
172 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
173 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
174 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
175 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
176 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
177 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
178 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
179 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
180 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
181 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
182 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
183 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
184 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
185 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
186 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
187 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
188 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
189 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
190 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
191 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
192 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
193 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
194 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
195 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
196 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
197 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
198 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
199 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
200 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
201 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
202 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
203 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
204 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
205 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
206 2751185782 Actinoplanes subtropicus NRRL B-24665 Isolate Rhizosphere
207 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
208 2895427314 Nonomuraea sp. PA05 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.05
Metatranscriptomes 0
Isolates 1.95

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.97
Nodule 0
Rhizoplane 5.52
Rhizosphere 91.23
Stem 0
Stem Tuber 0
Unclassified 3.25

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466960_0198077 3300044901 Bacteria 1096
2 JGI24738J21930_10013449 3300002075 Bacteria 1770
3 rootH1_10013853 3300003316 Bacteria 2643
4 rootL2_10041627 3300003322 Bacteria 3085
5 rootL2_10189936 3300003322 Bacteria 1262
6 JGI25407J50210_10000685 3300003373 Bacteria 7013
7 Ga0070658_10416172 3300005327 Bacteria 1155
8 Ga0070683_100016876 3300005329 Bacteria 6442
9 Ga0070683_100094301 3300005329 Bacteria 2813
10 Ga0070683_100205249 3300005329 Bacteria 1872
11 Ga0070683_100824376 3300005329 Bacteria 889
12 Ga0070683_100839502 3300005329 Bacteria 881
13 Ga0070670_100272700 3300005331 Bacteria 1476
14 Ga0068869_100034980 3300005334 Bacteria 3558
15 Ga0070680_100078936 3300005336 Bacteria 2712
16 Ga0070682_100219777 3300005337 Bacteria 1351
17 Ga0068868_100260793 3300005338 Bacteria 1461
18 Ga0070691_10020431 3300005341 Bacteria 3060
19 Ga0070675_100098418 3300005354 Bacteria 2460
20 Ga0070674_100022202 3300005356 Bacteria 4090
21 Ga0070673_100120156 3300005364 Bacteria 2191
22 Ga0070709_10146434 3300005434 Bacteria 1628
23 Ga0070713_100013403 3300005436 Bacteria 6052
24 Ga0070710_10085217 3300005437 Unclassified 1853
25 Ga0070701_10011410 3300005438 Bacteria 3971
26 Ga0070711_100012823 3300005439 Bacteria 5248
27 Ga0070700_100048152 3300005441 Bacteria 2641
28 Ga0070678_100095848 3300005456 Bacteria 2287
29 Ga0070681_10381625 3300005458 Bacteria 1320
30 Ga0068867_100069599 3300005459 Bacteria 2628
31 Ga0070685_10078057 3300005466 Bacteria 1979
32 Ga0070706_100312965 3300005467 Bacteria 1465
33 Ga0070698_100077218 3300005471 Bacteria 3331
34 Ga0070679_100252039 3300005530 Bacteria 1721
35 Ga0070684_100003054 3300005535 Bacteria 12494
36 Ga0070684_100162948 3300005535 Bacteria 2023
37 Ga0068853_100395620 3300005539 Bacteria 1292
38 Ga0070693_100002475 3300005547 Bacteria 8510
39 Ga0068855_100106159 3300005563 Bacteria 3228
40 Ga0068855_100460449 3300005563 Bacteria 1387
41 Ga0070664_100068151 3300005564 Bacteria 3042
42 Ga0068856_100086920 3300005614 Bacteria 3107
43 Ga0068856_100592801 3300005614 Unclassified 1129
44 Ga0070702_100005503 3300005615 Bacteria 5909
45 Ga0068852_100243331 3300005616 Bacteria 1720
46 Ga0068859_100224646 3300005617 Bacteria 1966
47 Ga0068864_100267705 3300005618 Bacteria 1591
48 Ga0068866_10161818 3300005718 Bacteria 1306
49 Ga0068851_10021962 3300005834 Bacteria 3103
50 Ga0068870_10028049 3300005840 Bacteria 2823
51 Ga0068863_100114347 3300005841 Bacteria 2571
52 Ga0068863_100448014 3300005841 Bacteria 1267
53 Ga0068863_100858264 3300005841 Bacteria 907
54 Ga0068858_100086242 3300005842 Bacteria 2921
55 Ga0068860_100265219 3300005843 Bacteria 1675
56 Ga0081455_10000154 3300005937 Bacteria 82712
57 Ga0081455_10001654 3300005937 Bacteria 27024
58 Ga0081455_10002132 3300005937 Bacteria 23569
59 Ga0081455_10005448 3300005937 Bacteria 13951
60 Ga0081455_10056553 3300005937 Bacteria 3330
61 Ga0081538_10000022 3300005981 Bacteria 131167
62 Ga0081538_10000848 3300005981 Bacteria 33003
63 Ga0081538_10035748 3300005981 Bacteria 3257
64 Ga0070717_10073205 3300006028 Bacteria 2863
65 Ga0075365_10043416 3300006038 Bacteria 2943
66 Ga0070715_10260888 3300006163 Bacteria 910
67 Ga0070712_100742032 3300006175 Bacteria 840
68 Ga0097621_100147769 3300006237 Bacteria 2014
69 Ga0068871_100150879 3300006358 Bacteria 1982
70 Ga0075428_100004141 3300006844 Bacteria 15964
71 Ga0075428_100008842 3300006844 Bacteria 11174
72 Ga0075428_100010550 3300006844 Bacteria 10268
73 Ga0075428_100118750 3300006844 Bacteria 2879
74 Ga0075428_100355694 3300006844 Bacteria 1571
75 Ga0075428_100475210 3300006844 Unclassified 1338
76 Ga0075428_100617823 3300006844 Bacteria 1157
77 Ga0075430_100006333 3300006846 Bacteria 9986
78 Ga0075430_100028394 3300006846 Bacteria 4753
79 Ga0075430_100355904 3300006846 Unclassified 1209
80 Ga0075431_100011437 3300006847 Bacteria 8943
81 Ga0075431_100017600 3300006847 Bacteria 7265
82 Ga0075431_100119101 3300006847 Bacteria 2724
83 Ga0075431_100385085 3300006847 Bacteria 1406
84 Ga0075433_10083710 3300006852 Bacteria 2816
85 Ga0075434_100020305 3300006871 Bacteria 6441
86 Ga0075434_100846503 3300006871 Bacteria 930
87 Ga0075429_100021224 3300006880 Bacteria 5630
88 Ga0075429_100054499 3300006880 Bacteria 3478
89 Ga0075429_100204180 3300006880 Bacteria 1732
90 Ga0075429_100313582 3300006880 Bacteria 1373
91 Ga0075429_100378181 3300006880 Bacteria 1240
92 Ga0075429_100558832 3300006880 Bacteria 1003
93 Ga0068865_100421950 3300006881 Bacteria 1097
94 Ga0097620_100224649 3300006931 Bacteria 1966
95 Ga0075435_100150622 3300007076 Bacteria 1955
96 Ga0099795_10131622 3300007788 Bacteria 1010
97 Ga0105251_10072880 3300009011 Bacteria 1596
98 Ga0111539_10042062 3300009094 Bacteria 5490
99 Ga0111539_10062634 3300009094 Bacteria 4402
100 Ga0111539_10113262 3300009094 Bacteria 3182
101 Ga0111539_10815134 3300009094 Bacteria 1086
102 Ga0105245_10080022 3300009098 Bacteria 2985
103 Ga0105245_10532623 3300009098 Bacteria 1195
104 Ga0105247_10033080 3300009101 Bacteria 3144
105 Ga0114129_10000906 3300009147 Bacteria 38579
106 Ga0114129_10045423 3300009147 Bacteria 6175
107 Ga0114129_10178388 3300009147 Bacteria 2892
108 Ga0114129_10798850 3300009147 Bacteria 1204
109 Ga0114129_12020109 3300009147 Bacteria 697
110 Ga0105243_10002531 3300009148 Bacteria 15262
111 Ga0105241_10151833 3300009174 Bacteria 1895
112 Ga0105248_10542474 3300009177 Bacteria 1312
113 Ga0105237_10076983 3300009545 Bacteria 3326
114 Ga0105238_10065069 3300009551 Bacteria 3647
115 Ga0105249_10082647 3300009553 Bacteria 2988
116 Ga0105249_10413274 3300009553 Bacteria 1382
117 Ga0099796_10002388 3300010159 Bacteria 4107
118 Ga0105239_10790100 3300010375 Bacteria 1087
119 Ga0105246_10038989 3300011119 Bacteria 3198
120 Ga0157313_1006203 3300012503 Bacteria 891
121 Ga0157324_1001561 3300012506 Bacteria 1281
122 Ga0157371_10042417 3300013102 Bacteria 3243
123 Ga0157371_10092706 3300013102 Bacteria 2140
124 Ga0157369_10000069 3300013105 Bacteria 143271
125 Ga0157369_10054116 3300013105 Bacteria 4334
126 Ga0157369_10079472 3300013105 Bacteria 3513
127 Ga0157369_10088529 3300013105 Bacteria 3305
128 Ga0157374_10056916 3300013296 Bacteria 3651
129 Ga0163162_11090752 3300013306 Bacteria 904
130 Ga0157372_10739910 3300013307 Bacteria 1143
131 Ga0157372_10802803 3300013307 Bacteria 1093
132 Ga0157375_10047611 3300013308 Bacteria 4189
133 Ga0163163_10044435 3300014325 Bacteria 4358
134 Ga0182008_10150787 3300014497 Bacteria 1166
135 Ga0157379_10019594 3300014968 Bacteria 5976
136 Ga0157376_10153167 3300014969 Bacteria 2081
137 Ga0157376_10164584 3300014969 Bacteria 2014
138 Ga0207697_10051781 3300025315 Bacteria 1697
139 Ga0207656_10158669 3300025321 Bacteria 1075
140 Ga0207682_10151546 3300025893 Bacteria 1046
141 Ga0207692_10067074 3300025898 Unclassified 1877
142 Ga0207688_10003344 3300025901 Bacteria 8760
143 Ga0207688_10207089 3300025901 Bacteria 1177
144 Ga0207699_10223882 3300025906 Bacteria 1285
145 Ga0207645_10025832 3300025907 Bacteria 3799
146 Ga0207643_10002626 3300025908 Bacteria 9726
147 Ga0207643_10003506 3300025908 Bacteria 8435
148 Ga0207705_10047050 3300025909 Bacteria 3101
149 Ga0207705_10244794 3300025909 Bacteria 1367
150 Ga0207671_10048299 3300025914 Bacteria 3150
151 Ga0207693_10013244 3300025915 Bacteria 6653
152 Ga0207663_10122275 3300025916 Bacteria 1784
153 Ga0207662_10082926 3300025918 Bacteria 1959
154 Ga0207657_10013050 3300025919 Bacteria 8165
155 Ga0207649_10059493 3300025920 Bacteria 2397
156 Ga0207694_10284462 3300025924 Bacteria 1359
157 Ga0207694_10380949 3300025924 Bacteria 1171
158 Ga0207659_10216322 3300025926 Bacteria 1538
159 Ga0207687_10183259 3300025927 Bacteria 1624
160 Ga0207687_10333315 3300025927 Bacteria 1231
161 Ga0207700_10373886 3300025928 Bacteria 1245
162 Ga0207700_10910434 3300025928 Bacteria 787
163 Ga0207690_10340449 3300025932 Bacteria 1184
164 Ga0207706_10091953 3300025933 Bacteria 2667
165 Ga0207669_10407798 3300025937 Bacteria 1066
166 Ga0207704_10035479 3300025938 Bacteria 2858
167 Ga0207711_10844284 3300025941 Bacteria 852
168 Ga0207689_10004813 3300025942 Bacteria 12171
169 Ga0207661_10002714 3300025944 Bacteria 12185
170 Ga0207661_10003032 3300025944 Bacteria 11609
171 Ga0207661_10075643 3300025944 Bacteria 2764
172 Ga0207661_10215303 3300025944 Bacteria 1695
173 Ga0207661_10557319 3300025944 Bacteria 1050
174 Ga0207661_10781621 3300025944 Bacteria 879
175 Ga0207679_10049351 3300025945 Bacteria 3070
176 Ga0207667_10215545 3300025949 Bacteria 1967
177 Ga0207667_10455151 3300025949 Bacteria 1300
178 Ga0207651_10036161 3300025960 Bacteria 3221
179 Ga0207651_10116937 3300025960 Bacteria 2014
180 Ga0207712_10382068 3300025961 Bacteria 1179
181 Ga0207640_10391300 3300025981 Bacteria 1129
182 Ga0207658_10337066 3300025986 Bacteria 1310
183 Ga0207677_10067787 3300026023 Bacteria 2501
184 Ga0207677_10192505 3300026023 Bacteria 1614
185 Ga0207703_10171954 3300026035 Bacteria 1906
186 Ga0207639_10521351 3300026041 Bacteria 1088
187 Ga0207678_10016935 3300026067 Bacteria 6400
188 Ga0207678_10253014 3300026067 Bacteria 1509
189 Ga0207708_10000642 3300026075 Bacteria 26799
190 Ga0207708_10039290 3300026075 Bacteria 3605
191 Ga0207702_10166106 3300026078 Bacteria 2019
192 Ga0207702_10197595 3300026078 Bacteria 1862
193 Ga0207641_10335850 3300026088 Bacteria 1436
194 Ga0207648_10178648 3300026089 Bacteria 1878
195 Ga0207676_10155758 3300026095 Bacteria 1973
196 Ga0207674_10155596 3300026116 Bacteria 2241
197 Ga0207674_10303425 3300026116 Bacteria 1546
198 Ga0207675_100001682 3300026118 Bacteria 22122
199 Ga0207675_100424285 3300026118 Bacteria 1314
200 Ga0207683_10018752 3300026121 Bacteria 5903
201 Ga0207698_10077668 3300026142 Bacteria 2663
202 Ga0207698_10135222 3300026142 Bacteria 2114
203 Ga0207428_10014251 3300027907 Bacteria 6917
204 Ga0207428_10083843 3300027907 Bacteria 2485
205 Ga0268264_10035486 3300028381 Bacteria 4106
206 Ga0307406_10152379 3300031901 Bacteria 1651
207 Ga0307416_100119629 3300032002 Bacteria 2344
208 Ga0307415_100023391 3300032126 Bacteria 3834
209 Ga0307507_10008352 3300033179 Bacteria 14373
210 Ga0373946_0304434 3300035171 Bacteria 789
211 Ga0395901_0434442 3300038443 Bacteria 1345
212 Ga0439443_006979 3300042003 Bacteria 1561
213 Ga0439450_002468 3300042008 Bacteria 2911
214 Ga0439454_004163 3300042011 Bacteria 1650
215 Ga0439455_0012609 3300042012 Bacteria 1902
216 Ga0439463_005251 3300042016 Bacteria 3220
217 Ga0439463_012317 3300042016 Bacteria 2102
218 Ga0439459_0045488 3300042438 Bacteria 947
219 Ga0439460_0013246 3300042461 Bacteria 2154
220 Ga0439440_0004964 3300042993 Bacteria 2626
221 Ga0439440_0029663 3300042993 Bacteria 1284
222 Ga0466972_0083629 3300044658 Unclassified 1518
223 Ga0466968_0053385 3300044735 Unclassified 1731
224 Ga0466960_0038223 3300044901 Bacteria 2255
225 Ga0466960_0092574 3300044901 Bacteria 1543
226 Ga0466967_0107274 3300045976 Bacteria 2561
227 Ga0466967_0668844 3300045976 Bacteria 1028
228 Ga0495676_0458398 3300047321 Unclassified 840
229 Ga0496101_0988075 3300048904 Bacteria 662
230 Ga0496102_0113502 3300048905 Bacteria 2528
231 Ga0496103_0029215 3300048906 Bacteria 3350
232 Ga0496103_0148138 3300048906 Bacteria 1503
233 Ga0496105_0070408 3300048908 Bacteria 2891
234 Ga0496106_0126440 3300048909 Bacteria 2002
235 Ga0496107_0119400 3300048910 Bacteria 1942
236 Ga0496108_0117509 3300048911 Bacteria 2279
237 Ga0496108_0367155 3300048911 Bacteria 1256
238 Ga0496109_0016930 3300048912 Bacteria 6380
239 Ga0496109_0548665 3300048912 Bacteria 1090
240 Ga0496111_0116379 3300048914 Bacteria 1971
241 Ga0496114_0099163 3300048917 Bacteria 2485
242 Ga0496114_0156031 3300048917 Bacteria 1982
243 Ga0496114_0378030 3300048917 Bacteria 1254
244 Ga0496114_0624519 3300048917 Bacteria 949
245 Ga0496115_0424463 3300048918 Bacteria 1077
246 Ga0501031_0042745 3300049568 Bacteria 2958
247 Ga0501033_0001539 3300049570 Bacteria 20388
248 Ga0501036_0003766 3300049572 Bacteria 12155
249 Ga0501037_0094426 3300049573 Bacteria 2163
250 Ga0501038_0047791 3300049574 Bacteria 3706
251 Ga0501039_0020797 3300049575 Bacteria 5030
252 Ga0501039_0139384 3300049575 Bacteria 1905
253 Ga0501040_0001627 3300049576 Bacteria 14311
254 Ga0501041_0004281 3300049577 Bacteria 8260
255 Ga0501042_0003407 3300049578 Bacteria 9979
256 Ga0501046_0060257 3300049580 Bacteria 2970
257 Ga0501048_0013448 3300049582 Bacteria 6074
258 Ga0501067_0220130 3300049583 Bacteria 1057
259 Ga0501068_0126422 3300049584 Bacteria 1597
260 Ga0501069_0063252 3300049585 Bacteria 2067
261 Ga0501071_0109178 3300049587 Bacteria 2044
262 Ga0501072_0000293 3300049588 Bacteria 35533
263 Ga0501075_0042155 3300049591 Bacteria 3421
264 Ga0501075_0193797 3300049591 Bacteria 1550
265 Ga0501076_0001033 3300049592 Bacteria 18302
266 Ga0501077_0009841 3300049593 Bacteria 5947
267 Ga0501079_0007647 3300049741 Bacteria 8187
268 Ga0501080_0195828 3300049742 Bacteria 1856
269 Ga0501081_0002873 3300049743 Bacteria 10940
270 Ga0501083_0150595 3300049744 Bacteria 1523
271 Ga0501035_0028085 3300049822 Bacteria 5138
272 Ga0501044_0290109 3300049823 Bacteria 1568
273 Ga0501045_0000890 3300049824 Bacteria 19406
274 Ga0501045_0022131 3300049824 Bacteria 4548
275 nmdc:mga03n38_63795_c1 3300050490 Bacteria 1684
276 nmdc:mga0yw44_33596_c1 3300050492 Bacteria 2998
277 nmdc:mga05p37_153460_c1 3300050507 Bacteria 2815
278 nmdc:mga05p37_305464_c1 3300050507 Bacteria 1888
279 nmdc:mga05p37_35400_c1 3300050507 Bacteria 6121
280 nmdc:mga05p37_657168_c1 3300050507 Bacteria 1172
281 nmdc:mga09592_11554_c1 3300050508 Bacteria 7183
282 nmdc:mga09592_141000_c1 3300050508 Bacteria 2078
283 nmdc:mga09592_434045_c1 3300050508 Bacteria 1134
284 nmdc:mga09592_440573_c1 3300050508 Unclassified 1124
285 nmdc:mga09592_592091_c1 3300050508 Bacteria 951
286 nmdc:mga0qj67_247444_c1 3300050509 Bacteria 1446
287 nmdc:mga0qj67_753304_c1 3300050509 Unclassified 773
288 nmdc:mga0qj67_81658_c1 3300050509 Bacteria 2592
289 nmdc:mga0qj67_8866_c1 3300050509 Bacteria 7463
290 nmdc:mga06r32_11316_c1 3300050510 Bacteria 8037
291 nmdc:mga06r32_19756_c1 3300050510 Bacteria 6191
292 nmdc:mga06r32_219228_c1 3300050510 Bacteria 1891
293 nmdc:mga06r32_30772_c1 3300050510 Bacteria 5037
294 nmdc:mga08y16_16973_c1 3300050511 Bacteria 7666
295 nmdc:mga08x19_114765_c1 3300050514 Bacteria 1800
296 nmdc:mga0a205_342365_c1 3300050515 Bacteria 1364
297 Ga0501084_0002846 3300054114 Bacteria 13978
298 Ga0501084_0042908 3300054114 Bacteria 3784
299 Ga0501082_0021719 3300060353 Bacteria 5533
300 Ga0530510_0000361 3300061734 Bacteria 29466
301 Ga0530510_0082604 3300061734 Bacteria 2339
302 Ga0530510_0579643 3300061734 Bacteria 853
303 2558911527 2558860112 Bacteria 9931328
304 2676491473 2675903060 Bacteria 10051191
305 2753267061 2751185782 Bacteria 11227053
306 2753272432 2751185782 Bacteria 11227053
307 2870788064 2870782633 Bacteria 9624083
308 2895430096 2895427314 Bacteria 13147766
309 Ga0466960_0198077
310 JGI24738J21930_10013449
311 rootH1_10013853
312 rootL2_10041627
313 rootL2_10189936
314 JGI25407J50210_10000685
315 Ga0070658_10416172
316 Ga0070683_100016876
317 Ga0070683_100094301
318 Ga0070683_100205249
319 Ga0070683_100824376
320 Ga0070683_100839502
321 Ga0070670_100272700
322 Ga0068869_100034980
323 Ga0070680_100078936
324 Ga0070682_100219777
325 Ga0068868_100260793
326 Ga0070691_10020431
327 Ga0070675_100098418
328 Ga0070674_100022202
329 Ga0070673_100120156
330 Ga0070709_10146434
331 Ga0070713_100013403
332 Ga0070710_10085217
333 Ga0070701_10011410
334 Ga0070711_100012823
335 Ga0070700_100048152
336 Ga0070678_100095848
337 Ga0070681_10381625
338 Ga0068867_100069599
339 Ga0070685_10078057
340 Ga0070706_100312965
341 Ga0070698_100077218
342 Ga0070679_100252039
343 Ga0070684_100003054
344 Ga0070684_100162948
345 Ga0068853_100395620
346 Ga0070693_100002475
347 Ga0068855_100106159
348 Ga0068855_100460449
349 Ga0070664_100068151
350 Ga0068856_100086920
351 Ga0068856_100592801
352 Ga0070702_100005503
353 Ga0068852_100243331
354 Ga0068859_100224646
355 Ga0068864_100267705
356 Ga0068866_10161818
357 Ga0068851_10021962
358 Ga0068870_10028049
359 Ga0068863_100114347
360 Ga0068863_100448014
361 Ga0068863_100858264
362 Ga0068858_100086242
363 Ga0068860_100265219
364 Ga0081455_10000154
365 Ga0081455_10001654
366 Ga0081455_10002132
367 Ga0081455_10005448
368 Ga0081455_10056553
369 Ga0081538_10000022
370 Ga0081538_10000848
371 Ga0081538_10035748
372 Ga0070717_10073205
373 Ga0075365_10043416
374 Ga0070715_10260888
375 Ga0070712_100742032
376 Ga0097621_100147769
377 Ga0068871_100150879
378 Ga0075428_100004141
379 Ga0075428_100008842
380 Ga0075428_100010550
381 Ga0075428_100118750
382 Ga0075428_100355694
383 Ga0075428_100475210
384 Ga0075428_100617823
385 Ga0075430_100006333
386 Ga0075430_100028394
387 Ga0075430_100355904
388 Ga0075431_100011437
389 Ga0075431_100017600
390 Ga0075431_100119101
391 Ga0075431_100385085
392 Ga0075433_10083710
393 Ga0075434_100020305
394 Ga0075434_100846503
395 Ga0075429_100021224
396 Ga0075429_100054499
397 Ga0075429_100204180
398 Ga0075429_100313582
399 Ga0075429_100378181
400 Ga0075429_100558832
401 Ga0068865_100421950
402 Ga0097620_100224649
403 Ga0075435_100150622
404 Ga0099795_10131622
405 Ga0105251_10072880
406 Ga0111539_10042062
407 Ga0111539_10062634
408 Ga0111539_10113262
409 Ga0111539_10815134
410 Ga0105245_10080022
411 Ga0105245_10532623
412 Ga0105247_10033080
413 Ga0114129_10000906
414 Ga0114129_10045423
415 Ga0114129_10178388
416 Ga0114129_10798850
417 Ga0114129_12020109
418 Ga0105243_10002531
419 Ga0105241_10151833
420 Ga0105248_10542474
421 Ga0105237_10076983
422 Ga0105238_10065069
423 Ga0105249_10082647
424 Ga0105249_10413274
425 Ga0099796_10002388
426 Ga0105239_10790100
427 Ga0105246_10038989
428 Ga0157313_1006203
429 Ga0157324_1001561
430 Ga0157371_10042417
431 Ga0157371_10092706
432 Ga0157369_10000069
433 Ga0157369_10054116
434 Ga0157369_10079472
435 Ga0157369_10088529
436 Ga0157374_10056916
437 Ga0163162_11090752
438 Ga0157372_10739910
439 Ga0157372_10802803
440 Ga0157375_10047611
441 Ga0163163_10044435
442 Ga0182008_10150787
443 Ga0157379_10019594
444 Ga0157376_10153167
445 Ga0157376_10164584
446 Ga0207697_10051781
447 Ga0207656_10158669
448 Ga0207682_10151546
449 Ga0207692_10067074
450 Ga0207688_10003344
451 Ga0207688_10207089
452 Ga0207699_10223882
453 Ga0207645_10025832
454 Ga0207643_10002626
455 Ga0207643_10003506
456 Ga0207705_10047050
457 Ga0207705_10244794
458 Ga0207671_10048299
459 Ga0207693_10013244
460 Ga0207663_10122275
461 Ga0207662_10082926
462 Ga0207657_10013050
463 Ga0207649_10059493
464 Ga0207694_10284462
465 Ga0207694_10380949
466 Ga0207659_10216322
467 Ga0207687_10183259
468 Ga0207687_10333315
469 Ga0207700_10373886
470 Ga0207700_10910434
471 Ga0207690_10340449
472 Ga0207706_10091953
473 Ga0207669_10407798
474 Ga0207704_10035479
475 Ga0207711_10844284
476 Ga0207689_10004813
477 Ga0207661_10002714
478 Ga0207661_10003032
479 Ga0207661_10075643
480 Ga0207661_10215303
481 Ga0207661_10557319
482 Ga0207661_10781621
483 Ga0207679_10049351
484 Ga0207667_10215545
485 Ga0207667_10455151
486 Ga0207651_10036161
487 Ga0207651_10116937
488 Ga0207712_10382068
489 Ga0207640_10391300
490 Ga0207658_10337066
491 Ga0207677_10067787
492 Ga0207677_10192505
493 Ga0207703_10171954
494 Ga0207639_10521351
495 Ga0207678_10016935
496 Ga0207678_10253014
497 Ga0207708_10000642
498 Ga0207708_10039290
499 Ga0207702_10166106
500 Ga0207702_10197595
501 Ga0207641_10335850
502 Ga0207648_10178648
503 Ga0207676_10155758
504 Ga0207674_10155596
505 Ga0207674_10303425
506 Ga0207675_100001682
507 Ga0207675_100424285
508 Ga0207683_10018752
509 Ga0207698_10077668
510 Ga0207698_10135222
511 Ga0207428_10014251
512 Ga0207428_10083843
513 Ga0268264_10035486
514 Ga0307406_10152379
515 Ga0307416_100119629
516 Ga0307415_100023391
517 Ga0307507_10008352
518 Ga0373946_0304434
519 Ga0395901_0434442
520 Ga0439443_006979
521 Ga0439450_002468
522 Ga0439454_004163
523 Ga0439455_0012609
524 Ga0439463_005251
525 Ga0439463_012317
526 Ga0439459_0045488
527 Ga0439460_0013246
528 Ga0439440_0004964
529 Ga0439440_0029663
530 Ga0466972_0083629
531 Ga0466968_0053385
532 Ga0466960_0038223
533 Ga0466960_0092574
534 Ga0466967_0107274
535 Ga0466967_0668844
536 Ga0495676_0458398
537 Ga0496101_0988075
538 Ga0496102_0113502
539 Ga0496103_0029215
540 Ga0496103_0148138
541 Ga0496105_0070408
542 Ga0496106_0126440
543 Ga0496107_0119400
544 Ga0496108_0117509
545 Ga0496108_0367155
546 Ga0496109_0016930
547 Ga0496109_0548665
548 Ga0496111_0116379
549 Ga0496114_0099163
550 Ga0496114_0156031
551 Ga0496114_0378030
552 Ga0496114_0624519
553 Ga0496115_0424463
554 Ga0501031_0042745
555 Ga0501033_0001539
556 Ga0501036_0003766
557 Ga0501037_0094426
558 Ga0501038_0047791
559 Ga0501039_0020797
560 Ga0501039_0139384
561 Ga0501040_0001627
562 Ga0501041_0004281
563 Ga0501042_0003407
564 Ga0501046_0060257
565 Ga0501048_0013448
566 Ga0501067_0220130
567 Ga0501068_0126422
568 Ga0501069_0063252
569 Ga0501071_0109178
570 Ga0501072_0000293
571 Ga0501075_0042155
572 Ga0501075_0193797
573 Ga0501076_0001033
574 Ga0501077_0009841
575 Ga0501079_0007647
576 Ga0501080_0195828
577 Ga0501081_0002873
578 Ga0501083_0150595
579 Ga0501035_0028085
580 Ga0501044_0290109
581 Ga0501045_0000890
582 Ga0501045_0022131
583 nmdc:mga03n38_63795_c1
584 nmdc:mga0yw44_33596_c1
585 nmdc:mga05p37_153460_c1
586 nmdc:mga05p37_305464_c1
587 nmdc:mga05p37_35400_c1
588 nmdc:mga05p37_657168_c1
589 nmdc:mga09592_11554_c1
590 nmdc:mga09592_141000_c1
591 nmdc:mga09592_434045_c1
592 nmdc:mga09592_440573_c1
593 nmdc:mga09592_592091_c1
594 nmdc:mga0qj67_247444_c1
595 nmdc:mga0qj67_753304_c1
596 nmdc:mga0qj67_81658_c1
597 nmdc:mga0qj67_8866_c1
598 nmdc:mga06r32_11316_c1
599 nmdc:mga06r32_19756_c1
600 nmdc:mga06r32_219228_c1
601 nmdc:mga06r32_30772_c1
602 nmdc:mga08y16_16973_c1
603 nmdc:mga08x19_114765_c1
604 nmdc:mga0a205_342365_c1
605 Ga0501084_0002846
606 Ga0501084_0042908
607 Ga0501082_0021719
608 Ga0530510_0000361
609 Ga0530510_0082604
610 Ga0530510_0579643
611 2558911527
612 2676491473
613 2753267061
614 2753272432
615 2870788064
616 2895430096

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04542

Sigma70_r2

Sigma-70 region 2

43

111

0.95

PF08281

Sigma70_r4_2

Sigma-70, region 4

165

218

0.95

PF04545

Sigma70_r4

Sigma-70, region 4

171

219

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.9386 145 204
4go1-assembly1.cif.gz_B-2 crystal structure of full length transcription repressor lsrr from e. coli. 0.9369 156 195
6jhe-assembly1.cif.gz_A crystal structure of bacillus subtilis sigw domain 4 in complexed with -35 element dna 0.9341 154 201
2h27-assembly2.cif.gz_D crystal structure of escherichia coli sigmae region 4 bound to its-35 element dna 0.9135 139 203
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.9081 143 202
ID Description Score Start End Superfamily
1or7B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9372 140 204 1.10.10.10
4go1B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9369 156 195 1.10.10.10
1or7A02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.936 140 203 1.10.10.10
1rp3G02 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;PhyR, sigma-like (SL) domain 0.9161 138 203 1.20.140.160
4go1A01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9159 156 196 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A7X6XLW8-F1-model_v4 Sigma-70 family RNA polymerase sigma factor 0.8589 5 206 GO:0003677
GO:0006352
GO:0016987
AF-A0A538FD07-F1-model_v4 RNA polymerase sigma factor 0.8559 7 204 GO:0003677
GO:0006352
GO:0006950
GO:0016987
AF-A0A2S8IIE9-F1-model_v4 RNA polymerase subunit sigma-70 0.853 4 204 GO:0003677
GO:0006352
GO:0016987
AF-A0A1I3ZJF2-F1-model_v4 RNA polymerase sigma-70 factor, ECF subfamily 0.8505 10 204 GO:0003677
GO:0006352
GO:0016987
AF-F6DUG5-F1-model_v4 RNA polymerase sigma factor, sigma-70 family 0.8496 9 217 GO:0003677
GO:0006352
GO:0016987

Map