F392377

General Info

Members Datasets Scaffolds Average Seq Length
294 218 588 730

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2547132424|2548696735
Length 824
Sequence ELLDDVLRSTVAAVAPGPPRRLTDPIVPGAAITAATCLELFDAQASSRHLDLAARRLGSSGAGYYSIGSSGHEGNAALAEVLRPTDPALLHYRSGAFFVRRCQRIPDLDPIRDVLLGVVAAAADPISGGRHKVFGSRAAAVIPQTSTIASHLPRAVGLAFALDRRRESPWPPDAVVLCTFGDASANHSTATGAINTAMHTAHLGIPMPVLFVCEDNGIGISVPTPPDWIETAYGSRPGLRYFEADGSDLLAALAVSAEAARWVRTRRRPAFLRLRTVRLLGHAGSDVESAYRGVADIEADRHRDPVAATARLLVTAGAATARQILDRYDALGARIAAVAAQVVDEPHLTSAAAVRAPLAYRTTDDTARQRREPPDHDDHPVTTADHEPASASASTPAPASTPASAPAPAPISASASAPASAPASAPAPAPAPAPASASASASASASASASASDAAAGLEGAAATVSGTAAKESADTSSGSGPGEPESRMTLAQSVNHTLAALLRHDPDILVFGEDAGRKGGVYGVTKGLQRAFGARRVFDTLLDEQSVLGAALGASLAGFVPIPEIQYLAYLHNALDQIRGEAATLSYFSDGQYRNPMVVRVASFAYQKGFGGHFHNDNSVAALRDIPGLVVAAPARADDAAALLRRCAELARTEGRVCLFLEPIALYHTRDLYESGDSAWLAAPEEEPADFARARIHGSGTDLTIVTFANGVRMSLRAAQCLADNGIHARVLDLRWLTPLPAADILHHATATGAVLVADETRRSGGVSESVCAALIDGGFRGRVARVTSDDSFVPLGPAADLVLLNESAIVDAALRLLDTRST

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
3 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
7 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
17 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
18 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
19 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
20 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
25 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
26 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
27 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
32 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
33 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
34 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
37 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
38 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
39 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
42 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
43 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
46 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
47 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
48 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
49 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
50 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
51 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
67 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
69 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
70 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
71 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
72 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
73 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
74 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
75 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
76 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
77 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
78 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
79 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
80 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
81 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
82 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
83 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
84 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
85 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
86 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
87 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
88 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
89 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
90 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
91 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
92 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
93 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
94 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
95 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
96 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
97 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
98 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
99 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
100 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
101 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
102 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
103 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
104 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
105 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
106 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
107 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
108 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
109 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
110 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
111 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
112 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
113 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
114 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
115 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
116 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
117 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
118 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
119 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
120 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
121 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
122 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
123 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
124 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
125 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
126 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
127 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
128 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
129 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
130 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
131 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
132 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
133 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
134 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
135 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
137 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
140 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
144 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
145 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
146 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
147 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
148 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
149 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
150 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
151 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
152 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
153 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
154 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
155 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
156 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
157 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
158 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
159 3300049658 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_B_0_drought Metagenome Rhizosphere
160 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
161 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
162 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
163 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
164 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
165 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
166 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
167 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
168 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
169 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
170 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
171 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
172 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
173 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
174 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
175 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
176 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
177 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
178 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
179 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
180 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
181 2547132424 Nocardia nova SH22a Isolate Unclassified
182 2547132130 Stenotrophomonas maltophilia RR-10 Isolate Unclassified
183 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
184 2643221541 Sphingomonas sp. Root50 Isolate Unclassified
185 2643221605 Sphingomonas sp. Root710 Isolate Unclassified
186 2643221606 Sphingomonas sp. Root720 Isolate Unclassified
187 2643221671 Sphingomonas sp. Root1294 Isolate Unclassified
188 2643221687 Mycobacterium sp. Root135 Isolate Unclassified
189 2643221692 Nocardia sp. Root136 Isolate Unclassified
190 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
191 2775506925 Saccharopolyspora phatthalungensis NRRL B-24798 Isolate Rhizosphere
192 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
193 2842391507 Stenotrophomonas maltophilia SEMIA 4027 Isolate Nodule
194 2854681122 Luteovulum sphaeroides SCJ Isolate Unclassified
195 2863067949 Saccharopolyspora phatthalungensis DSM 45584 (Annotation) (version 2) Isolate Rhizosphere
196 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
197 2874220319 Stenotrophomonas maltophilia PS5 Isolate Unclassified
198 2882806704 Pelagerythrobacter rhizovicinus AY-3R Isolate Rhizosphere
199 2884693830 Nonomuraea phyllanthi WYY166 Isolate Unclassified
200 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
201 2891554331 Microbispora sp. CL1-1 Isolate Unclassified
202 2891562705 Microbispora tritici MT50 Isolate Unclassified
203 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
204 2895442618 Nonomuraea phyllanthi PA1-10 Isolate Unclassified
205 2902837492 Mycolicibacterium sp. P1-18 Isolate Unclassified
206 2919089067 Stenotrophomonas sp. 1337 Isolate Rhizosphere
207 2919134579 Stenotrophomonas geniculata 1733 Isolate Rhizosphere
208 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
209 2928496128 Stenotrophomonas indicatrix 1163 Isolate Unclassified
210 2931380184 Stenotrophomonas sp. DR822 Isolate Rhizosphere
211 2937610967 Stenotrophomonas maltophilia EP20 Isolate Unclassified
212 2939626828 Stenotrophomonas sp. 2694 Isolate Rhizosphere
213 2961047084 Stenotrophomonas maltophilia EP5 Isolate Unclassified
214 2961064222 Stenotrophomonas maltophilia EP13 Isolate Unclassified
215 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
216 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
217 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
218 8056207758 Saccharopolyspora indica KCTC 29208 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 86.73
Metatranscriptomes 0.34
Isolates 12.93

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.72
Nodule 0.34
Rhizoplane 6.46
Rhizosphere 75.17
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10005981 3300003203 Bacteria 5627
2 Ga0055536_1006949 3300003781 Bacteria 5154
3 Ga0055540_1000221 3300003792 Bacteria 53636
4 Ga0055540_1001045 3300003792 Bacteria 17649
5 Ga0070658_10054875 3300005327 Bacteria 3236
6 Ga0070670_100058442 3300005331 Bacteria 3311
7 Ga0070689_100008093 3300005340 Bacteria 7386
8 Ga0070689_100028451 3300005340 Bacteria 4225
9 Ga0070674_100016245 3300005356 Bacteria 4664
10 Ga0070714_100067341 3300005435 Bacteria 3087
11 Ga0070705_100002139 3300005440 Bacteria 10050
12 Ga0070708_100034621 3300005445 Bacteria 4396
13 Ga0070678_100008423 3300005456 Bacteria 6177
14 Ga0070706_100000010 3300005467 Bacteria 208025
15 Ga0070707_100040990 3300005468 Bacteria 4431
16 Ga0070707_100052579 3300005468 Bacteria 3906
17 Ga0070698_100001405 3300005471 Bacteria 26672
18 Ga0070698_100012466 3300005471 Bacteria 8998
19 Ga0070699_100005037 3300005518 Bacteria 11629
20 Ga0070699_100005108 3300005518 Bacteria 11546
21 Ga0070684_100004175 3300005535 Bacteria 10944
22 Ga0070684_100013547 3300005535 Bacteria 6580
23 Ga0070697_100002664 3300005536 Bacteria 13729
24 Ga0068853_100008066 3300005539 Bacteria 8446
25 Ga0068855_100101032 3300005563 Bacteria 3320
26 Ga0070702_100044570 3300005615 Bacteria 2505
27 Ga0068864_100033608 3300005618 Bacteria 4361
28 Ga0068870_10013830 3300005840 Bacteria 3800
29 Ga0081455_10001428 3300005937 Bacteria 29556
30 Ga0081455_10034969 3300005937 Bacteria 4496
31 Ga0081540_1000521 3300005983 Bacteria 37683
32 Ga0081539_10000182 3300005985 Bacteria 148133
33 Ga0081539_10014455 3300005985 Bacteria 5836
34 Ga0070717_10042963 3300006028 Bacteria 3688
35 Ga0075432_10000662 3300006058 Bacteria 10545
36 Ga0075428_100000744 3300006844 Bacteria 33825
37 Ga0075428_100003214 3300006844 Bacteria 17874
38 Ga0075428_100122515 3300006844 Bacteria 2830
39 Ga0075430_100003986 3300006846 Bacteria 12447
40 Ga0075431_100018927 3300006847 Bacteria 7015
41 Ga0075433_10012825 3300006852 Bacteria 6790
42 Ga0075434_100004773 3300006871 Bacteria 12273
43 Ga0075429_100013031 3300006880 Bacteria 7215
44 Ga0075435_100004342 3300007076 Bacteria 9743
45 Ga0075435_100035969 3300007076 Bacteria 3932
46 Ga0075435_100052760 3300007076 Bacteria 3277
47 Ga0105240_10022050 3300009093 Bacteria 8454
48 Ga0111539_10002580 3300009094 Bacteria 23985
49 Ga0111539_10066909 3300009094 Bacteria 4244
50 Ga0114129_10006841 3300009147 Bacteria 16205
51 Ga0114129_10010931 3300009147 Bacteria 12935
52 Ga0114129_10072864 3300009147 Bacteria 4786
53 Ga0114129_10142577 3300009147 Bacteria 3283
54 Ga0105243_10026192 3300009148 Bacteria 4463
55 Ga0105248_10012081 3300009177 Bacteria 9526
56 Ga0105248_10034985 3300009177 Bacteria 5621
57 Ga0105238_10006402 3300009551 Bacteria 11714
58 Ga0105246_10003177 3300011119 Bacteria 9983
59 Ga0157369_10004554 3300013105 Bacteria 16303
60 Ga0157369_10020837 3300013105 Bacteria 7328
61 Ga0163162_10040655 3300013306 Bacteria 4651
62 Ga0163163_10108788 3300014325 Bacteria 2799
63 Ga0157377_10023224 3300014745 Bacteria 3285
64 Ga0163161_10008862 3300017792 Bacteria 6956
65 Ga0206353_11263046 3300020082 Bacteria 3633
66 Ga0213876_10001103 3300021384 Bacteria 17278
67 Ga0213875_10001218 3300021388 Bacteria 17428
68 Ga0209051_1001486 3300025303 Bacteria 19702
69 Ga0209051_1002389 3300025303 Bacteria 13544
70 Ga0209051_1003006 3300025303 Bacteria 11438
71 Ga0207647_10001276 3300025904 Bacteria 19373
72 Ga0207643_10024290 3300025908 Bacteria 3344
73 Ga0207684_10000038 3300025910 Bacteria 274884
74 Ga0207693_10046709 3300025915 Bacteria 3402
75 Ga0207646_10049236 3300025922 Bacteria 3775
76 Ga0207650_10050662 3300025925 Bacteria 3071
77 Ga0207706_10010452 3300025933 Bacteria 8480
78 Ga0207679_10026015 3300025945 Bacteria 4031
79 Ga0207658_10045755 3300025986 Bacteria 3192
80 Ga0207639_10025889 3300026041 Bacteria 4257
81 Ga0207708_10015110 3300026075 Bacteria 5784
82 Ga0207674_10024584 3300026116 Bacteria 6434
83 Ga0207674_10052238 3300026116 Bacteria 4168
84 Ga0207675_100085535 3300026118 Bacteria 2960
85 Ga0207683_10012499 3300026121 Bacteria 7242
86 Ga0209974_10007246 3300027876 Bacteria 3827
87 Ga0207428_10001069 3300027907 Bacteria 30032
88 Ga0268264_10059123 3300028381 Bacteria 3211
89 Ga0307515_10001983 3300028794 Bacteria 45325
90 Ga0307511_10002237 3300030521 Bacteria 20250
91 Ga0307410_10015274 3300031852 Bacteria 4549
92 Ga0307412_10004099 3300031911 Bacteria 8121
93 Ga0307415_100029293 3300032126 Bacteria 3516
94 Ga0373934_0006594 3300035086 Bacteria 4305
95 Ga0373949_0000001 3300035090 Bacteria 103947
96 Ga0373936_0003335 3300035113 Bacteria 6021
97 Ga0373953_0002625 3300035117 Bacteria 5436
98 Ga0373956_0007241 3300035119 Bacteria 4467
99 Ga0373961_0000007 3300035241 Bacteria 145618
100 Ga0316582_0049129 3300036647 Bacteria 2669
101 Ga0436364_0014417 3300037853 Bacteria 52893
102 Ga0395901_0022392 3300038443 Bacteria 6475
103 Ga0400485_08319 3300038735 Bacteria 132575
104 Ga0400486_18424 3300038742 Bacteria 50772
105 Ga0400483_005875 3300039062 Bacteria 7488
106 Ga0400483_279754 3300039062 Bacteria 139594
107 Ga0436365_0184266 3300039437 Bacteria 36150
108 Ga0450911_000858 3300042115 Bacteria 8282
109 Ga0451577_0000087 3300042876 Bacteria 207662
110 Ga0466961_0002308 3300044693 Bacteria 11854
111 Ga0466959_0001413 3300045049 Bacteria 14683
112 Ga0451576_0031855 3300045051 Bacteria 5619
113 Ga0495641_0017087 3300046461 Bacteria 3793
114 Ga0495651_0013903 3300046462 Bacteria 6225
115 Ga0495653_0023237 3300046463 Bacteria 5013
116 Ga0495582_0017708 3300046473 Bacteria 3895
117 Ga0495639_0009778 3300046475 Bacteria 4115
118 Ga0495607_0012533 3300046501 Bacteria 5591
119 Ga0495608_0008943 3300046511 Bacteria 7003
120 Ga0495630_0026121 3300046517 Bacteria 4321
121 Ga0495663_0002119 3300046525 Bacteria 6072
122 Ga0495665_0001824 3300046531 Bacteria 11498
123 Ga0495640_0016034 3300046533 Bacteria 5617
124 Ga0495586_0007125 3300046535 Bacteria 5958
125 Ga0495667_0000069 3300046559 Bacteria 79580
126 Ga0495667_0002419 3300046559 Bacteria 12460
127 Ga0495634_0011371 3300046642 Bacteria 6483
128 Ga0495635_0032407 3300046663 Bacteria 3625
129 Ga0495646_0012468 3300046680 Bacteria 5405
130 Ga0495658_0007880 3300046683 Bacteria 5273
131 Ga0495613_0023260 3300046689 Bacteria 4616
132 Ga0495624_0006411 3300046690 Bacteria 8349
133 Ga0495600_0010382 3300046809 Bacteria 5780
134 Ga0495581_0017852 3300047315 Bacteria 4123
135 Ga0495581_0068606 3300047315 Bacteria 2050
136 Ga0495683_0002830 3300047323 Bacteria 10284
137 Ga0495675_0016730 3300047444 Bacteria 4637
138 Ga0495686_0005081 3300047472 Bacteria 10531
139 Ga0495686_0010367 3300047472 Bacteria 6634
140 Ga0496100_0000522 3300048903 Bacteria 18415
141 Ga0496102_0000010 3300048905 Bacteria 324617
142 Ga0496103_0000082 3300048906 Bacteria 109451
143 Ga0496104_0015426 3300048907 Bacteria 6919
144 Ga0496104_0015453 3300048907 Bacteria 6913
145 Ga0496105_0006771 3300048908 Bacteria 8810
146 Ga0496105_0018905 3300048908 Bacteria 5549
147 Ga0496105_0062187 3300048908 Bacteria 3081
148 Ga0496106_0002490 3300048909 Bacteria 13722
149 Ga0496108_0034004 3300048911 Bacteria 4234
150 Ga0496109_0000235 3300048912 Bacteria 53820
151 Ga0496109_0006946 3300048912 Bacteria 9555
152 Ga0496109_0039466 3300048912 Bacteria 4273
153 Ga0496113_0085019 3300048916 Bacteria 2430
154 Ga0496114_0007035 3300048917 Bacteria 8877
155 Ga0496114_0015600 3300048917 Bacteria 6109
156 Ga0496114_0027185 3300048917 Bacteria 4685
157 Ga0496114_0054085 3300048917 Bacteria 3347
158 Ga0496115_0018613 3300048918 Bacteria 5336
159 Ga0496116_0001352 3300048919 Bacteria 27806
160 Ga0496116_0003385 3300048919 Bacteria 15811
161 Ga0496117_0000037 3300048920 Bacteria 324960
162 Ga0496117_0015380 3300048920 Bacteria 6527
163 Ga0496118_0000034 3300048921 Bacteria 322764
164 Ga0496120_0020075 3300048923 Bacteria 4258
165 Ga0496121_0021280 3300048924 Bacteria 6361
166 Ga0496122_0050570 3300048925 Bacteria 3168
167 Ga0496124_0000033 3300048927 Bacteria 330586
168 Ga0496125_0030913 3300048928 Bacteria 4780
169 Ga0496126_0069809 3300048929 Bacteria 3132
170 Ga0501031_0000498 3300049568 Bacteria 22964
171 Ga0501031_0013625 3300049568 Bacteria 5298
172 Ga0501032_0000605 3300049569 Bacteria 29034
173 Ga0501032_0008239 3300049569 Bacteria 7600
174 Ga0501032_0028634 3300049569 Bacteria 3827
175 Ga0501033_0000444 3300049570 Bacteria 39598
176 Ga0501034_0000689 3300049571 Bacteria 51329
177 Ga0501034_0002625 3300049571 Bacteria 21325
178 Ga0501034_0049778 3300049571 Bacteria 4228
179 Ga0501036_0000744 3300049572 Bacteria 24111
180 Ga0501036_0000797 3300049572 Bacteria 23394
181 Ga0501036_0033833 3300049572 Bacteria 4323
182 Ga0501036_0034425 3300049572 Bacteria 4285
183 Ga0501037_0000853 3300049573 Bacteria 22742
184 Ga0501037_0027062 3300049573 Bacteria 4236
185 Ga0501037_0041786 3300049573 Bacteria 3371
186 Ga0501038_0000692 3300049574 Bacteria 29964
187 Ga0501038_0026740 3300049574 Bacteria 5137
188 Ga0501039_0000331 3300049575 Bacteria 33794
189 Ga0501039_0006133 3300049575 Bacteria 9126
190 Ga0501040_0018892 3300049576 Bacteria 4580
191 Ga0501041_0066261 3300049577 Bacteria 2213
192 Ga0501042_0003827 3300049578 Bacteria 9517
193 Ga0501042_0028876 3300049578 Bacteria 3911
194 Ga0501043_0001374 3300049579 Bacteria 21325
195 Ga0501043_0013797 3300049579 Bacteria 6323
196 Ga0501046_0000764 3300049580 Bacteria 31122
197 Ga0501047_0001388 3300049581 Bacteria 23753
198 Ga0501047_0003524 3300049581 Bacteria 14774
199 Ga0501048_0000399 3300049582 Bacteria 30244
200 Ga0501048_0005418 3300049582 Bacteria 9701
201 Ga0501068_0022858 3300049584 Bacteria 3660
202 Ga0501069_0001321 3300049585 Bacteria 12148
203 Ga0501069_0006175 3300049585 Bacteria 6258
204 Ga0501070_0001011 3300049586 Bacteria 25220
205 Ga0501070_0005521 3300049586 Bacteria 10785
206 Ga0501070_0015700 3300049586 Bacteria 6367
207 Ga0501071_0001765 3300049587 Bacteria 12749
208 Ga0501071_0034466 3300049587 Bacteria 3603
209 Ga0501072_0003651 3300049588 Bacteria 11590
210 Ga0501073_0007730 3300049589 Bacteria 7979
211 Ga0501074_0000635 3300049590 Bacteria 21782
212 Ga0501074_0005613 3300049590 Bacteria 9030
213 Ga0501074_0011461 3300049590 Bacteria 6449
214 Ga0501075_0000870 3300049591 Bacteria 19099
215 Ga0501075_0053472 3300049591 Bacteria 3037
216 Ga0501077_0007449 3300049593 Bacteria 6750
217 Ga0501077_0022386 3300049593 Bacteria 4004
218 Ga0501211_000906 3300049658 Bacteria 3097
219 Ga0501079_0000676 3300049741 Bacteria 22923
220 Ga0501080_0002201 3300049742 Bacteria 16935
221 Ga0501080_0011595 3300049742 Bacteria 8071
222 Ga0501080_0041391 3300049742 Bacteria 4293
223 Ga0501080_0071858 3300049742 Bacteria 3219
224 Ga0501081_0013482 3300049743 Bacteria 5373
225 Ga0501081_0014694 3300049743 Bacteria 5164
226 Ga0501083_0003952 3300049744 Bacteria 10415
227 Ga0501035_0008083 3300049822 Bacteria 9805
228 Ga0501044_0006016 3300049823 Bacteria 13404
229 Ga0501044_0127008 3300049823 Bacteria 2547
230 Ga0501044_0130107 3300049823 Bacteria 2512
231 Ga0501045_0012432 3300049824 Bacteria 5994
232 nmdc:mga05p37_137179_c1 3300050507 Bacteria 2999
233 nmdc:mga05p37_37144_c1 3300050507 Bacteria 5974
234 nmdc:mga05p37_5484_c1 3300050507 Bacteria 14901
235 nmdc:mga09592_11828_c1 3300050508 Bacteria 7098
236 nmdc:mga06r32_45740_c1 3300050510 Bacteria 4174
237 nmdc:mga08y16_51828_c1 3300050511 Bacteria 4294
238 nmdc:mga0n895_23352_c1 3300050512 Bacteria 5812
239 nmdc:mga0n895_49289_c1 3300050512 Bacteria 4125
240 nmdc:mga0n895_64482_c1 3300050512 Bacteria 3624
241 nmdc:mga0rr50_52961_c1 3300050513 Bacteria 3017
242 nmdc:mga0rr50_5392_c1 3300050513 Bacteria 7625
243 nmdc:mga0rr50_6474_c1 3300050513 Bacteria 7132
244 nmdc:mga08x19_32475_c1 3300050514 Bacteria 3290
245 Ga0495601_0011176 3300053077 Bacteria 5362
246 Ga0495612_0002781 3300053078 Bacteria 7241
247 Ga0495595_0018027 3300053084 Bacteria 3045
248 Ga0500643_000087 3300053087 Bacteria 96111
249 Ga0500643_009862 3300053087 Bacteria 3610
250 Ga0501084_0002852 3300054114 Bacteria 13970
251 Ga0501084_0005839 3300054114 Bacteria 10133
252 Ga0501084_0016385 3300054114 Bacteria 6155
253 Ga0501082_0008537 3300060353 Bacteria 8835
254 Ga0530510_0009450 3300061734 Bacteria 6836
255 Ga0530510_0017175 3300061734 Bacteria 5126
256 Ga0530510_0067876 3300061734 Bacteria 2587
257 2548696735 2547132424 Bacteria 8348532
258 2547501170 2547132130 Bacteria 4660562
259 2552108818 2551306166 Bacteria 9731570
260 2643728112 2643221541 Bacteria 5498788
261 2644040579 2643221605 Bacteria 4772303
262 2644042939 2643221606 Bacteria 5588032
263 2644395630 2643221671 Bacteria 5496681
264 2644487182 2643221687 Bacteria 6500351
265 2644512424 2643221692 Bacteria 7282860
266 2676490966 2675903060 Bacteria 10051191
267 2776377135 2775506925 Bacteria 7237746
268 2816423158 2816332119 Bacteria 8120218
269 2842391930 2842391507 Bacteria 4486072
270 2854684378 2854681122 Bacteria 4548679
271 2863073457 2863067949 Bacteria 8541735
272 2870784420 2870782633 Bacteria 9624083
273 2874222361 2874220319 Bacteria 4594709
274 2882808696 2882806704 Bacteria 3007728
275 2884701123 2884693830 Bacteria 11273186
276 2891403522 2891395885 Bacteria 9251614
277 2891556740 2891554331 Bacteria 8812224
278 2891565914 2891562705 Bacteria 8039471
279 2895436150 2895427314 Bacteria 13147766
280 2895448822 2895442618 Bacteria 11027144
281 2902839266 2902837492 Bacteria 6697721
282 2919090295 2919089067 Bacteria 4560942
283 2919138549 2919134579 Bacteria 4480386
284 2919717653 2919713450 Bacteria 7431245
285 2928497686 2928496128 Bacteria 4631123
286 2931384183 2931380184 Bacteria 4455911
287 2937614655 2937610967 Bacteria 4618818
288 2939630977 2939626828 Bacteria 4695272
289 2961049126 2961047084 Bacteria 4594415
290 2961066175 2961064222 Bacteria 4749990
291 3003004559 3002998708 Bacteria 11715108
292 8003863476 8003856774 Bacteria 7675274
293 8053952899 8053945823 Bacteria 8962862
294 8056214470 8056207758 Bacteria 8639239
295 JGI25406J46586_10005981
296 Ga0055536_1006949
297 Ga0055540_1000221
298 Ga0055540_1001045
299 Ga0070658_10054875
300 Ga0070670_100058442
301 Ga0070689_100008093
302 Ga0070689_100028451
303 Ga0070674_100016245
304 Ga0070714_100067341
305 Ga0070705_100002139
306 Ga0070708_100034621
307 Ga0070678_100008423
308 Ga0070706_100000010
309 Ga0070707_100040990
310 Ga0070707_100052579
311 Ga0070698_100001405
312 Ga0070698_100012466
313 Ga0070699_100005037
314 Ga0070699_100005108
315 Ga0070684_100004175
316 Ga0070684_100013547
317 Ga0070697_100002664
318 Ga0068853_100008066
319 Ga0068855_100101032
320 Ga0070702_100044570
321 Ga0068864_100033608
322 Ga0068870_10013830
323 Ga0081455_10001428
324 Ga0081455_10034969
325 Ga0081540_1000521
326 Ga0081539_10000182
327 Ga0081539_10014455
328 Ga0070717_10042963
329 Ga0075432_10000662
330 Ga0075428_100000744
331 Ga0075428_100003214
332 Ga0075428_100122515
333 Ga0075430_100003986
334 Ga0075431_100018927
335 Ga0075433_10012825
336 Ga0075434_100004773
337 Ga0075429_100013031
338 Ga0075435_100004342
339 Ga0075435_100035969
340 Ga0075435_100052760
341 Ga0105240_10022050
342 Ga0111539_10002580
343 Ga0111539_10066909
344 Ga0114129_10006841
345 Ga0114129_10010931
346 Ga0114129_10072864
347 Ga0114129_10142577
348 Ga0105243_10026192
349 Ga0105248_10012081
350 Ga0105248_10034985
351 Ga0105238_10006402
352 Ga0105246_10003177
353 Ga0157369_10004554
354 Ga0157369_10020837
355 Ga0163162_10040655
356 Ga0163163_10108788
357 Ga0157377_10023224
358 Ga0163161_10008862
359 Ga0206353_11263046
360 Ga0213876_10001103
361 Ga0213875_10001218
362 Ga0209051_1001486
363 Ga0209051_1002389
364 Ga0209051_1003006
365 Ga0207647_10001276
366 Ga0207643_10024290
367 Ga0207684_10000038
368 Ga0207693_10046709
369 Ga0207646_10049236
370 Ga0207650_10050662
371 Ga0207706_10010452
372 Ga0207679_10026015
373 Ga0207658_10045755
374 Ga0207639_10025889
375 Ga0207708_10015110
376 Ga0207674_10024584
377 Ga0207674_10052238
378 Ga0207675_100085535
379 Ga0207683_10012499
380 Ga0209974_10007246
381 Ga0207428_10001069
382 Ga0268264_10059123
383 Ga0307515_10001983
384 Ga0307511_10002237
385 Ga0307410_10015274
386 Ga0307412_10004099
387 Ga0307415_100029293
388 Ga0373934_0006594
389 Ga0373949_0000001
390 Ga0373936_0003335
391 Ga0373953_0002625
392 Ga0373956_0007241
393 Ga0373961_0000007
394 Ga0316582_0049129
395 Ga0436364_0014417
396 Ga0395901_0022392
397 Ga0400485_08319
398 Ga0400486_18424
399 Ga0400483_005875
400 Ga0400483_279754
401 Ga0436365_0184266
402 Ga0450911_000858
403 Ga0451577_0000087
404 Ga0466961_0002308
405 Ga0466959_0001413
406 Ga0451576_0031855
407 Ga0495641_0017087
408 Ga0495651_0013903
409 Ga0495653_0023237
410 Ga0495582_0017708
411 Ga0495639_0009778
412 Ga0495607_0012533
413 Ga0495608_0008943
414 Ga0495630_0026121
415 Ga0495663_0002119
416 Ga0495665_0001824
417 Ga0495640_0016034
418 Ga0495586_0007125
419 Ga0495667_0000069
420 Ga0495667_0002419
421 Ga0495634_0011371
422 Ga0495635_0032407
423 Ga0495646_0012468
424 Ga0495658_0007880
425 Ga0495613_0023260
426 Ga0495624_0006411
427 Ga0495600_0010382
428 Ga0495581_0017852
429 Ga0495581_0068606
430 Ga0495683_0002830
431 Ga0495675_0016730
432 Ga0495686_0005081
433 Ga0495686_0010367
434 Ga0496100_0000522
435 Ga0496102_0000010
436 Ga0496103_0000082
437 Ga0496104_0015426
438 Ga0496104_0015453
439 Ga0496105_0006771
440 Ga0496105_0018905
441 Ga0496105_0062187
442 Ga0496106_0002490
443 Ga0496108_0034004
444 Ga0496109_0000235
445 Ga0496109_0006946
446 Ga0496109_0039466
447 Ga0496113_0085019
448 Ga0496114_0007035
449 Ga0496114_0015600
450 Ga0496114_0027185
451 Ga0496114_0054085
452 Ga0496115_0018613
453 Ga0496116_0001352
454 Ga0496116_0003385
455 Ga0496117_0000037
456 Ga0496117_0015380
457 Ga0496118_0000034
458 Ga0496120_0020075
459 Ga0496121_0021280
460 Ga0496122_0050570
461 Ga0496124_0000033
462 Ga0496125_0030913
463 Ga0496126_0069809
464 Ga0501031_0000498
465 Ga0501031_0013625
466 Ga0501032_0000605
467 Ga0501032_0008239
468 Ga0501032_0028634
469 Ga0501033_0000444
470 Ga0501034_0000689
471 Ga0501034_0002625
472 Ga0501034_0049778
473 Ga0501036_0000744
474 Ga0501036_0000797
475 Ga0501036_0033833
476 Ga0501036_0034425
477 Ga0501037_0000853
478 Ga0501037_0027062
479 Ga0501037_0041786
480 Ga0501038_0000692
481 Ga0501038_0026740
482 Ga0501039_0000331
483 Ga0501039_0006133
484 Ga0501040_0018892
485 Ga0501041_0066261
486 Ga0501042_0003827
487 Ga0501042_0028876
488 Ga0501043_0001374
489 Ga0501043_0013797
490 Ga0501046_0000764
491 Ga0501047_0001388
492 Ga0501047_0003524
493 Ga0501048_0000399
494 Ga0501048_0005418
495 Ga0501068_0022858
496 Ga0501069_0001321
497 Ga0501069_0006175
498 Ga0501070_0001011
499 Ga0501070_0005521
500 Ga0501070_0015700
501 Ga0501071_0001765
502 Ga0501071_0034466
503 Ga0501072_0003651
504 Ga0501073_0007730
505 Ga0501074_0000635
506 Ga0501074_0005613
507 Ga0501074_0011461
508 Ga0501075_0000870
509 Ga0501075_0053472
510 Ga0501077_0007449
511 Ga0501077_0022386
512 Ga0501211_000906
513 Ga0501079_0000676
514 Ga0501080_0002201
515 Ga0501080_0011595
516 Ga0501080_0041391
517 Ga0501080_0071858
518 Ga0501081_0013482
519 Ga0501081_0014694
520 Ga0501083_0003952
521 Ga0501035_0008083
522 Ga0501044_0006016
523 Ga0501044_0127008
524 Ga0501044_0130107
525 Ga0501045_0012432
526 nmdc:mga05p37_137179_c1
527 nmdc:mga05p37_37144_c1
528 nmdc:mga05p37_5484_c1
529 nmdc:mga09592_11828_c1
530 nmdc:mga06r32_45740_c1
531 nmdc:mga08y16_51828_c1
532 nmdc:mga0n895_23352_c1
533 nmdc:mga0n895_49289_c1
534 nmdc:mga0n895_64482_c1
535 nmdc:mga0rr50_52961_c1
536 nmdc:mga0rr50_5392_c1
537 nmdc:mga0rr50_6474_c1
538 nmdc:mga08x19_32475_c1
539 Ga0495601_0011176
540 Ga0495612_0002781
541 Ga0495595_0018027
542 Ga0500643_000087
543 Ga0500643_009862
544 Ga0501084_0002852
545 Ga0501084_0005839
546 Ga0501084_0016385
547 Ga0501082_0008537
548 Ga0530510_0009450
549 Ga0530510_0017175
550 Ga0530510_0067876
551 2548696735
552 2547501170
553 2552108818
554 2643728112
555 2644040579
556 2644042939
557 2644395630
558 2644487182
559 2644512424
560 2676490966
561 2776377135
562 2816423158
563 2842391930
564 2854684378
565 2863073457
566 2870784420
567 2874222361
568 2882808696
569 2884701123
570 2891403522
571 2891556740
572 2891565914
573 2895436150
574 2895448822
575 2902839266
576 2919090295
577 2919138549
578 2919717653
579 2928497686
580 2931384183
581 2937614655
582 2939630977
583 2961049126
584 2961066175
585 3003004559
586 8003863476
587 8053952899
588 8056214470

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02779

Transket_pyr

Transketolase, pyrimidine binding domain

487

668

0.93

PF02780

Transketolase_C

Transketolase, C-terminal domain

693

811

0.92

PF00676

E1_dh

Dehydrogenase E1 component

42

350

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
1umd-assembly1.cif.gz_D branched-chain 2-oxo acid dehydrogenase (e1) from thermus thermophilus hb8 with 4-methyl-2-oxopentanoate as an intermediate 0.8996 422 745
1w88-assembly2.cif.gz_H the crystal structure of pyruvate dehydrogenase e1(d180n,e183q) bound to the peripheral subunit binding domain of e2 0.8959 422 745
1w88-assembly2.cif.gz_F the crystal structure of pyruvate dehydrogenase e1(d180n,e183q) bound to the peripheral subunit binding domain of e2 0.8944 424 746
6cer-assembly1.cif.gz_D human pyruvate dehydrogenase complex e1 component v138m mutation 0.8937 423 746
1umd-assembly1.cif.gz_D branched-chain 2-oxo acid dehydrogenase (e1) from thermus thermophilus hb8 with 4-methyl-2-oxopentanoate as an intermediate 0.8888 422 745
ID Description Score Start End Superfamily
af_Q09171_230_364_3.40.50.920 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9512 626 747 3.40.50.920
1um9B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9459 422 605 3.40.50.970
1w85B02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9404 626 745 3.40.50.920
af_E5RPJ6_273_405_3.40.50.920 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9385 625 747 3.40.50.920
af_Q2FY53_193_326_3.40.50.920 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; 0.9376 626 745 3.40.50.920
ID Description Score Start End GO Terms
AF-A0A2M7E794-F1-model_v4 Dehydrogenase 0.9864 427 537
AF-A0A519K7H8-F1-model_v4 Alpha-ketoacid dehydrogenase subunit beta 0.9864 423 538 GO:0007584
GO:0009083
AF-A0A3C0XHU8-F1-model_v4 Alpha-ketoacid dehydrogenase subunit beta 0.9859 425 539
AF-A0A183PZC3-F1-model_v4 Pyruvate dehydrogenase E1 component subunit beta (EC 1.2.4.1) 0.9775 424 537 GO:0004739
GO:0006086
AF-A0A3L7BK50-F1-model_v4 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) 0.9685 402 745 GO:0000287
GO:0003824
GO:0007584
GO:0009083

Map