F391221

General Info

Members Datasets Scaffolds Average Seq Length
292 222 585 367

Family's Representative Sequence

Representative Sequence 3300053160|Ga0500633_0004308|Ga0500633_0004308_1762_2955
Length 397
Sequence MKVGIVGAGNISATYVATLHMFDFIRVKSIYDLYEEPARKLAEQFGVQSVSLDAMLADPEIGLIINLTTPTAHYSISKRALLAGKHVYSEKPLGVSMEEAEELMALARAGDLRLGCAPDTFLGGGHQLTRRLYDEGRIGTAISATAMLLLPGHEHWHPNPAFFYGRGGGPMLDVGPYYVTNLIALLGPVREVFGAAKVTRIERTVKTQPRFGETIKVLTPTHLTGVMEFHSGATVTIATSFDVIRHKHNQIEIYGSKGSMVTPDPNNFTGKVEIFTEGDEAWEEVAVDHPYVEGVPGHLGLRGLGAAEMVDSLRSGRPHRVSSELAFHALEVMTAFERSAQSKRAVTIRSSCGRPDPIPRHLKEGKFTQVFLPDGQASDARMHHSSPGRSQVFGDCG

Samples

Sample ID Description Type Environment
1 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
2 3300002737 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA Metagenome Endosphere
3 3300002739 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA Metagenome Endosphere
4 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
5 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
6 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
7 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
8 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
9 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
10 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
11 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
12 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
13 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
14 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
15 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
16 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
17 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
18 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
19 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
20 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
21 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
22 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
23 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
24 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
25 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
26 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
27 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
28 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
29 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
30 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
31 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
32 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
33 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
34 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
35 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
36 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
37 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
38 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
39 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
40 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
41 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
42 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
43 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
44 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
45 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
46 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
47 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
48 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
49 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
50 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
51 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
52 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
53 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
54 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
55 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
56 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
57 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
58 3300020075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
59 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
60 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
61 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
62 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
63 3300025225 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
64 3300025233 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
65 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
66 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
67 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
68 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
69 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
70 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
71 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
72 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
73 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
74 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
92 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
95 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
96 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
97 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
98 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
99 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
100 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
101 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
102 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
103 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
104 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
105 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
106 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
107 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
108 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
109 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
110 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
111 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
112 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
113 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
114 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
115 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
116 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
117 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
118 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
119 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
120 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
121 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
122 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
123 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
124 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
125 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
126 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
127 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
128 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
129 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
130 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
131 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
132 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
133 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
134 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
135 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
136 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
137 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
138 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
139 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
140 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
141 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
142 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
143 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
144 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
145 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
146 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
147 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
148 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
149 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
150 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
151 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
152 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
153 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
154 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
155 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
156 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
157 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
158 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
159 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
160 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
161 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
162 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
163 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
164 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
165 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
166 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
167 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
168 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
169 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
170 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
171 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
172 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
173 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
174 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
175 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
176 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
177 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
178 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
179 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
180 2510917030 Rhizobium sp. CF142 Isolate Rhizosphere
181 2512564039 Paenibacillus mucilaginosus 3016 Isolate Rhizosphere
182 2513237161 Bradyrhizobium sp. WSM2793 Isolate Nodule
183 2524023209 Rhizobium leucaenae USDA 9039 Isolate Nodule
184 2582581298 Rhizobium alamii YR540 Isolate Rhizosphere
185 2582581308 Rhizobium sp. OK494 Isolate Rhizosphere
186 2582581315 Agrobacterium rhizogenes YR147 Isolate Rhizosphere
187 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
188 2585427527 Rhizobium lusitanum YR374 Isolate Rhizosphere
189 2585427529 Rhizobium alamii YR584 Isolate Rhizosphere
190 2585427530 Rhizobium tropici YR635 Isolate Rhizosphere
191 2615840626 Rhizobium lusitanum P1-7 Isolate Nodule
192 2615840698 Rhizobium multihospitium HAMBI 2975 Isolate Nodule
193 2671180694 Paenibacillus sp. A3 Isolate Unclassified
194 2818991448 Rhizobium miluonense 1234 Isolate Unclassified
195 2818991453 Rhizobium lusitanum 1158 Isolate Unclassified
196 2824671348 Bradyrhizobium sp. HAMBI 2125 Isolate Unclassified
197 2824687955 Bradyrhizobium sp. HAMBI 2126 Isolate Unclassified
198 2841760612 Bosea sp. Tri-49 Isolate Nodule
199 2841941048 Bradyrhizobium sp. SBR1B Isolate Nodule
200 2842298080 Rhizobium leucaenae SEMIA 492 Isolate Nodule
201 2842357229 Rhizobium leucaenae SEMIA 4015 Isolate Nodule
202 2842482326 Rhizobium lusitanum SEMIA 4060 Isolate Nodule
203 2842509118 Rhizobium paranaense SEMIA 4064 Isolate Nodule
204 2844104063 Bosea sp. Tri-39 Isolate Nodule
205 2851182111 Bosea sp. Tri-44 Isolate Nodule
206 2851246043 Bosea sp. Tri-54 Isolate Nodule
207 2852387548 Rhizobium jaguaris CCGE525 Isolate Unclassified
208 2907202186 Paenibacillus sp. HJL G12 Isolate Unclassified
209 2919100787 Rhizobium sp. 1399 Isolate Rhizosphere
210 2925326138 Paenibacillus hemerocallicola KCTC 33185 Isolate Unclassified
211 2971403814 Paenibacillus tritici LMG 29502 Isolate Unclassified
212 2980182181 Paenibacillus cymbidii R196 Isolate Unclassified
213 3005416602 Rhizobium sp. P40RR-XXII Isolate Rhizosphere
214 3005445848 Rhizobium sp. WYJ-E13 Isolate Unclassified
215 8005314921 Rhizobium sp. P28RR-XV Isolate Rhizosphere
216 8005484373 Rhizobium tropici SARCC-755 Isolate Nodule
217 8005645114 Rhizobium tropici IGFRI Rhizo-19 Isolate Rhizosphere
218 8005682033 Rhizobium dioscoreae S-93 Isolate Unclassified
219 8024486573 Rhizobium tubonense CCBAU 85046 Isolate Nodule
220 8046767195 Rhizobium calliandrae CCGE524 Isolate Unclassified
221 8054795415 Paenibacillus periandrae PM10 Isolate Nodule
222 8057575449 Rhizobium mayense CCGE526 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 84.59
Metatranscriptomes 0.68
Isolates 14.73

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 21.23
Nodule 5.82
Rhizoplane 4.45
Rhizosphere 54.79
Stem 0
Stem Tuber 0
Unclassified 3.08

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0500633_0004308 3300053160 Bacteria 3247
2 JGI25162J39368_1000589 3300002737 Bacteria 26498
3 JGI25158J39367_1000179 3300002739 Bacteria 14982
4 JGI25159J45721_1002550 3300002987 Bacteria 6856
5 JGI25159J45721_1004393 3300002987 Bacteria 4690
6 JGI25151J46595_10006531 3300003187 Bacteria 5847
7 JGI25165J46597_1000732 3300003214 Bacteria 25699
8 JGI25165J46597_1005258 3300003214 Bacteria 2542
9 JGI25153J46596_10000137 3300003215 Bacteria 77667
10 rootH1_10098947 3300003316 Bacteria 3116
11 rootH1_10098947 3300003323 Bacteria 5427
12 rootL2_10010421 3300003322 Bacteria 11374
13 rootH1_10025938 3300003323 Bacteria 2614
14 rootH1_10031940 3300003323 Bacteria 10112
15 JGI25160J50197_1000079 3300003354 Bacteria 101859
16 JGI25160J50197_1010339 3300003354 Bacteria 3381
17 JGI25161J50226_1000010 3300003374 Bacteria 214823
18 JGI25161J50226_1000060 3300003374 Bacteria 101859
19 Ga0055528_1001599 3300003790 Bacteria 13383
20 Ga0055543_1000086 3300004625 Bacteria 81231
21 Ga0055543_1000253 3300004625 Bacteria 40518
22 Ga0065165_1000208 3300005262 Bacteria 101897
23 Ga0065165_1008360 3300005262 Bacteria 4861
24 Ga0068869_100077240 3300005334 Bacteria 2476
25 Ga0070689_100234693 3300005340 Bacteria 1509
26 Ga0070668_100065890 3300005347 Bacteria 2810
27 Ga0070669_100177914 3300005353 Bacteria 1662
28 Ga0070675_100076192 3300005354 Bacteria 2790
29 Ga0070675_100126275 3300005354 Bacteria 2176
30 Ga0070673_100129543 3300005364 Bacteria 2115
31 Ga0070667_100095301 3300005367 Bacteria 2566
32 Ga0070667_100145120 3300005367 Bacteria 2081
33 Ga0070713_100016705 3300005436 Bacteria 5524
34 Ga0070713_100127898 3300005436 Bacteria 2237
35 Ga0070678_100023777 3300005456 Bacteria 4090
36 Ga0070678_100264212 3300005456 Bacteria 1449
37 Ga0070685_10129067 3300005466 Bacteria 1579
38 Ga0070672_100024483 3300005543 Bacteria 4463
39 Ga0070672_100115976 3300005543 Bacteria 2188
40 Ga0070665_100036437 3300005548 Bacteria 4948
41 Ga0070665_100130261 3300005548 Bacteria 2518
42 Ga0068856_100068698 3300005614 Bacteria 3503
43 Ga0068864_100104553 3300005618 Bacteria 2515
44 Ga0068862_100015023 3300005844 Bacteria 6430
45 Ga0081455_10000539 3300005937 Bacteria 49224
46 Ga0081455_10052129 3300005937 Bacteria 3505
47 Ga0081455_10064555 3300005937 Bacteria 3065
48 Ga0081538_10002206 3300005981 Bacteria 19301
49 Ga0081540_1011533 3300005983 Bacteria 5903
50 Ga0081539_10001781 3300005985 Bacteria 34193
51 Ga0081539_10018447 3300005985 Bacteria 4842
52 Ga0081539_10068344 3300005985 Bacteria 1917
53 Ga0075365_10016921 3300006038 Bacteria 4450
54 Ga0075367_10010707 3300006178 Bacteria 4828
55 Ga0075369_10004849 3300006186 Bacteria 5004
56 Ga0075369_10056481 3300006186 Bacteria 1706
57 Ga0075366_10018984 3300006195 Bacteria 3974
58 Ga0075366_10136907 3300006195 Bacteria 1479
59 Ga0068871_100071340 3300006358 Bacteria 2857
60 Ga0075428_100291842 3300006844 Bacteria 1754
61 Ga0105240_10000012 3300009093 Bacteria 496639
62 Ga0105240_10015863 3300009093 Bacteria 10221
63 Ga0105240_10134317 3300009093 Bacteria 2964
64 Ga0111539_10060202 3300009094 Bacteria 4500
65 Ga0114129_10028821 3300009147 Bacteria 7866
66 Ga0114129_10128193 3300009147 Unclassified 3487
67 Ga0114129_10542345 3300009147 Bacteria 1514
68 Ga0105242_10061216 3300009176 Bacteria 3095
69 Ga0105248_10086281 3300009177 Bacteria 3532
70 Ga0105248_10215911 3300009177 Bacteria 2160
71 Ga0105237_10000054 3300009545 Bacteria 155063
72 Ga0105237_10109591 3300009545 Bacteria 2753
73 Ga0105239_10016045 3300010375 Bacteria 8289
74 Ga0157370_10000441 3300013104 Bacteria 51870
75 Ga0157378_10169186 3300013297 Bacteria 2048
76 Ga0163162_10062822 3300013306 Bacteria 3755
77 Ga0163162_10106266 3300013306 Bacteria 2902
78 Ga0157375_10198508 3300013308 Bacteria 2161
79 Ga0182008_10003079 3300014497 Bacteria 10241
80 Ga0182008_10009373 3300014497 Bacteria 5288
81 Ga0157377_10118490 3300014745 Bacteria 1601
82 Ga0157376_10065057 3300014969 Bacteria 3077
83 Ga0182006_1034621 3300015261 Bacteria 2019
84 Ga0182007_10001612 3300015262 Bacteria 11981
85 Ga0182005_1003447 3300015265 Bacteria 5364
86 Ga0206349_1843067 3300020075 Bacteria 1297
87 Ga0213872_10010289 3300021361 Bacteria 4455
88 Ga0213874_10012120 3300021377 Unclassified 2204
89 Ga0224712_10017648 3300022467 Bacteria 2371
90 Ga0209436_100025 3300025208 Bacteria 93575
91 Ga0209566_100108 3300025225 Bacteria 119382
92 Ga0209437_100040 3300025233 Bacteria 448096
93 Ga0209437_113615 3300025233 Bacteria 1158
94 Ga0209677_103603 3300025253 Bacteria 4910
95 Ga0209148_1007526 3300025254 Bacteria 2255
96 Ga0209233_1000051 3300025261 Bacteria 447617
97 Ga0209233_1000201 3300025261 Bacteria 123566
98 Ga0209673_1002654 3300025273 Bacteria 11956
99 Ga0209130_1000001 3300025284 Bacteria 831557
100 Ga0209130_1000152 3300025284 Bacteria 105768
101 Ga0209025_1001813 3300025294 Bacteria 25245
102 Ga0209025_1018259 3300025294 Bacteria 3993
103 Ga0209564_1001131 3300025295 Bacteria 31317
104 Ga0209758_1009075 3300025297 Bacteria 6273
105 Ga0209758_1009077 3300025297 Bacteria 6272
106 Ga0209758_1021162 3300025297 Bacteria 3044
107 Ga0207426_1000017 3300025302 Bacteria 577913
108 Ga0207426_1000045 3300025302 Bacteria 422847
109 Ga0207645_10235357 3300025907 Bacteria 1209
110 Ga0207684_10006080 3300025910 Bacteria 11041
111 Ga0207695_10000097 3300025913 Bacteria 262517
112 Ga0207695_10140302 3300025913 Bacteria 2366
113 Ga0207671_10000023 3300025914 Bacteria 274756
114 Ga0207646_10004115 3300025922 Bacteria 15993
115 Ga0207681_10155476 3300025923 Bacteria 1718
116 Ga0207650_10117095 3300025925 Bacteria 2070
117 Ga0207659_10266614 3300025926 Bacteria 1395
118 Ga0207700_10060552 3300025928 Bacteria 2868
119 Ga0207670_10080186 3300025936 Bacteria 2281
120 Ga0207691_10017392 3300025940 Bacteria 6818
121 Ga0207651_10086252 3300025960 Bacteria 2281
122 Ga0207651_10211754 3300025960 Bacteria 1561
123 Ga0207668_10016407 3300025972 Bacteria 4622
124 Ga0207658_10052170 3300025986 Bacteria 3017
125 Ga0207678_10241208 3300026067 Unclassified 1548
126 Ga0207683_10062169 3300026121 Bacteria 3288
127 Ga0207683_10126551 3300026121 Bacteria 2296
128 Ga0207698_10013474 3300026142 Bacteria 5395
129 Ga0209371_1004446 3300027312 Bacteria 6098
130 Ga0268266_10069658 3300028379 Bacteria 3048
131 Ga0268265_10016306 3300028380 Bacteria 5100
132 Ga0268256_1004952 3300030500 Bacteria 5376
133 Ga0307513_10165675 3300031456 Bacteria 2095
134 Ga0307405_10063819 3300031731 Bacteria 2338
135 Ga0316577_10084585 3300031733 Bacteria 1775
136 Ga0307407_10075187 3300031903 Bacteria 2024
137 Ga0307409_100068778 3300031995 Bacteria 2802
138 Ga0307415_100105717 3300032126 Bacteria 2076
139 Ga0307510_10107619 3300033180 Bacteria 2546
140 Ga0373955_0031145 3300035172 Bacteria 2793
141 Ga0316574_0003981 3300035398 Bacteria 7692
142 Ga0373935_0089719 3300035692 Bacteria 2011
143 Ga0316584_0176877 3300036712 Bacteria 1581
144 Ga0436365_0145109 3300039437 Bacteria 5438
145 Ga0436361_0429530 3300039447 Unclassified 2203
146 Ga0436361_1050599 3300039447 Bacteria 13884
147 Ga0436363_0521706 3300039450 Unclassified 3536
148 Ga0439435_0000606 3300042436 Bacteria 5840
149 Ga0466969_0000488 3300044656 Bacteria 21732
150 Ga0466969_0044916 3300044656 Unclassified 2194
151 Ga0466965_0019845 3300044683 Bacteria 3228
152 Ga0466966_0002894 3300044684 Bacteria 11312
153 Ga0466966_0006492 3300044684 Bacteria 7740
154 Ga0466961_0036746 3300044693 Unclassified 3143
155 Ga0466964_0023162 3300044706 Bacteria 2413
156 Ga0453684_0015097 3300044712 Bacteria 12255
157 Ga0466968_0000151 3300044735 Bacteria 21084
158 Ga0466970_0000018 3300044765 Bacteria 64473
159 Ga0466957_0042661 3300044842 Unclassified 2745
160 Ga0466957_0053459 3300044842 Unclassified 2462
161 Ga0466959_0001466 3300045049 Bacteria 14454
162 Ga0466958_0003651 3300045836 Bacteria 8031
163 Ga0495592_0127567 3300046454 Bacteria 1783
164 Ga0495590_0046081 3300046457 Bacteria 1521
165 Ga0495629_0037898 3300046459 Bacteria 3397
166 Ga0495629_0230463 3300046459 Bacteria 1277
167 Ga0495638_0000323 3300046460 Bacteria 60784
168 Ga0495638_0058070 3300046460 Bacteria 2398
169 Ga0495639_0006482 3300046475 Bacteria 5032
170 Ga0495662_0003905 3300046476 Bacteria 7518
171 Ga0495606_0002584 3300046507 Bacteria 20713
172 Ga0495606_0082681 3300046507 Bacteria 1993
173 Ga0495610_0103209 3300046512 Bacteria 1274
174 Ga0495643_0044996 3300046522 Bacteria 2397
175 Ga0495643_0060220 3300046522 Bacteria 2016
176 Ga0495652_0237194 3300046529 Bacteria 1360
177 Ga0495586_0116605 3300046535 Bacteria 1490
178 Ga0495622_0004156 3300046557 Bacteria 6753
179 Ga0495656_0000173 3300046615 Bacteria 22836
180 Ga0495635_0211641 3300046663 Bacteria 1313
181 Ga0495657_0036476 3300046675 Bacteria 3398
182 Ga0495646_0083135 3300046680 Bacteria 1862
183 Ga0495600_0046290 3300046809 Bacteria 2838
184 Ga0495660_0012157 3300046810 Bacteria 4995
185 Ga0495672_0010083 3300047320 Bacteria 6763
186 Ga0495672_0019707 3300047320 Bacteria 4444
187 Ga0495686_0000499 3300047472 Bacteria 57475
188 Ga0495686_0005039 3300047472 Bacteria 10601
189 Ga0496101_0004837 3300048904 Bacteria 8543
190 Ga0496102_0006619 3300048905 Bacteria 9903
191 Ga0496102_0021810 3300048905 Bacteria 5668
192 Ga0496103_0026143 3300048906 Bacteria 3533
193 Ga0496103_0029304 3300048906 Bacteria 3345
194 Ga0496104_0001150 3300048907 Bacteria 22647
195 Ga0496105_0134935 3300048908 Bacteria 2033
196 Ga0496106_0000957 3300048909 Bacteria 21015
197 Ga0496106_0021404 3300048909 Bacteria 4802
198 Ga0496107_0308946 3300048910 Bacteria 1177
199 Ga0496109_0178772 3300048912 Bacteria 1992
200 Ga0496111_0062392 3300048914 Bacteria 2702
201 Ga0496113_0048457 3300048916 Bacteria 3161
202 Ga0496116_0009754 3300048919 Bacteria 8148
203 Ga0496117_0002639 3300048920 Bacteria 22240
204 Ga0496117_0068104 3300048920 Bacteria 2405
205 Ga0496118_0001296 3300048921 Bacteria 38074
206 Ga0496121_0003609 3300048924 Bacteria 21849
207 Ga0496121_0004314 3300048924 Bacteria 19247
208 Ga0496121_0120103 3300048924 Bacteria 1986
209 Ga0496121_0147542 3300048924 Bacteria 1736
210 Ga0496122_0028025 3300048925 Bacteria 4796
211 Ga0496122_0036335 3300048925 Bacteria 3986
212 Ga0496122_0037299 3300048925 Bacteria 3915
213 Ga0496123_0011464 3300048926 Bacteria 7680
214 Ga0496124_0007795 3300048927 Bacteria 11309
215 Ga0496124_0192179 3300048927 Bacteria 1561
216 Ga0496125_0008319 3300048928 Bacteria 10893
217 Ga0496125_0049908 3300048928 Bacteria 3470
218 Ga0496125_0095631 3300048928 Bacteria 2209
219 Ga0496126_0104084 3300048929 Bacteria 2480
220 Ga0501034_0107704 3300049571 Bacteria 2779
221 Ga0501034_0239136 3300049571 Bacteria 1762
222 Ga0501034_0289550 3300049571 Bacteria 1576
223 Ga0501037_0013126 3300049573 Bacteria 6108
224 Ga0501038_0056081 3300049574 Bacteria 3384
225 Ga0501038_0072739 3300049574 Bacteria 2913
226 Ga0501044_0021077 3300049823 Bacteria 6958
227 Ga0501044_0033933 3300049823 Bacteria 5357
228 nmdc:mga03683_18318_c1 3300050489 Bacteria 2661
229 nmdc:mga03683_83344_c1 3300050489 Bacteria 1384
230 nmdc:mga0yw44_37418_c1 3300050492 Bacteria 2865
231 nmdc:mga0k408_127077_c1 3300050493 Bacteria 1512
232 nmdc:mga0k408_21775_c1 3300050493 Bacteria 3604
233 nmdc:mga07m45_64971_c1 3300050496 Bacteria 2071
234 nmdc:mga05p37_383006_c1 3300050507 Bacteria 1647
235 nmdc:mga05p37_42614_c1 3300050507 Bacteria 5578
236 nmdc:mga08y16_105318_c1 3300050511 Bacteria 2936
237 nmdc:mga08y16_130529_c1 3300050511 Bacteria 2613
238 nmdc:mga0sz30_1476_c1 3300050516 Bacteria 8394
239 Ga0500651_0037832 3300053093 Bacteria 3041
240 Ga0500650_0103188 3300053098 Bacteria 1334
241 Ga0500618_001364 3300053125 Bacteria 11118
242 Ga0500658_0017149 3300053134 Bacteria 2702
243 Ga0500568_0000076 3300053139 Bacteria 94411
244 Ga0500568_0000410 3300053139 Bacteria 32805
245 Ga0500568_0001398 3300053139 Bacteria 15662
246 Ga0500590_000090 3300053148 Bacteria 23712
247 Ga0500604_0000220 3300053151 Bacteria 16409
248 Ga0500616_0001884 3300053153 Bacteria 18878
249 Ga0500622_0000215 3300053156 Bacteria 61272
250 Ga0500622_0030054 3300053156 Bacteria 2854
251 2511193922 2510917030 Bacteria 7460662
252 2512730470 2512564039 Bacteria 8739048
253 2514009854 2513237161 Bacteria 8871253
254 2524457198 2524023209 Bacteria 6679728
255 2585226981 2582581298 Bacteria 7315509
256 2585278251 2582581308 Bacteria 7413247
257 2585324925 2582581315 Bacteria 7318924
258 2585332893 2582581316 Bacteria 7774528
259 2585532089 2585427527 Bacteria 7273426
260 2585550396 2585427529 Bacteria 7395659
261 2585552450 2585427530 Bacteria 7383882
262 2616307769 2615840626 Bacteria 7921970
263 2616552246 2615840698 Bacteria 7319877
264 2673819350 2671180694 Bacteria 7506943
265 2819610157 2818991448 Bacteria 6772224
266 2819640335 2818991453 Bacteria 7181617
267 2824673025 2824671348 Bacteria 8369588
268 2824693804 2824687955 Bacteria 8360029
269 2841764787 2841760612 Bacteria 6454112
270 2841948154 2841941048 Bacteria 8688029
271 2842299248 2842298080 Bacteria 6123127
272 2842358715 2842357229 Bacteria 6485165
273 2842486986 2842482326 Bacteria 7212537
274 2842512126 2842509118 Bacteria 6850950
275 2844107765 2844104063 Bacteria 6440972
276 2851185869 2851182111 Bacteria 6047226
277 2851249871 2851246043 Bacteria 6439203
278 2852394651 2852387548 Bacteria 8025568
279 2907203127 2907202186 Bacteria 6632024
280 2919107477 2919100787 Bacteria 7710546
281 2925328550 2925326138 Bacteria 9652120
282 2971408220 2971403814 Bacteria 7370929
283 2980183383 2980182181 Bacteria 9454109
284 3005416800 3005416602 Bacteria 7064308
285 3005451120 3005445848 Bacteria 6906074
286 8005320553 8005314921 Bacteria 7072929
287 8005487569 8005484373 Bacteria 6297373
288 8005647930 8005645114 Bacteria 6950293
289 8005684218 8005682033 Bacteria 6726518
290 8024490181 8024486573 Bacteria 6540512
291 8046770687 8046767195 Bacteria 7547379
292 8054803758 8054795415 Bacteria 9785225
293 8057579938 8057575449 Bacteria 7367519
294 Ga0500633_0004308
295 JGI25162J39368_1000589
296 JGI25158J39367_1000179
297 JGI25159J45721_1002550
298 JGI25159J45721_1004393
299 JGI25151J46595_10006531
300 JGI25165J46597_1000732
301 JGI25165J46597_1005258
302 JGI25153J46596_10000137
303 rootH1_10098947
304 rootL2_10010421
305 rootH1_10025938
306 rootH1_10031940
307 JGI25160J50197_1000079
308 JGI25160J50197_1010339
309 JGI25161J50226_1000010
310 JGI25161J50226_1000060
311 Ga0055528_1001599
312 Ga0055543_1000086
313 Ga0055543_1000253
314 Ga0065165_1000208
315 Ga0065165_1008360
316 Ga0068869_100077240
317 Ga0070689_100234693
318 Ga0070668_100065890
319 Ga0070669_100177914
320 Ga0070675_100076192
321 Ga0070675_100126275
322 Ga0070673_100129543
323 Ga0070667_100095301
324 Ga0070667_100145120
325 Ga0070713_100016705
326 Ga0070713_100127898
327 Ga0070678_100023777
328 Ga0070678_100264212
329 Ga0070685_10129067
330 Ga0070672_100024483
331 Ga0070672_100115976
332 Ga0070665_100036437
333 Ga0070665_100130261
334 Ga0068856_100068698
335 Ga0068864_100104553
336 Ga0068862_100015023
337 Ga0081455_10000539
338 Ga0081455_10052129
339 Ga0081455_10064555
340 Ga0081538_10002206
341 Ga0081540_1011533
342 Ga0081539_10001781
343 Ga0081539_10018447
344 Ga0081539_10068344
345 Ga0075365_10016921
346 Ga0075367_10010707
347 Ga0075369_10004849
348 Ga0075369_10056481
349 Ga0075366_10018984
350 Ga0075366_10136907
351 Ga0068871_100071340
352 Ga0075428_100291842
353 Ga0105240_10000012
354 Ga0105240_10015863
355 Ga0105240_10134317
356 Ga0111539_10060202
357 Ga0114129_10028821
358 Ga0114129_10128193
359 Ga0114129_10542345
360 Ga0105242_10061216
361 Ga0105248_10086281
362 Ga0105248_10215911
363 Ga0105237_10000054
364 Ga0105237_10109591
365 Ga0105239_10016045
366 Ga0157370_10000441
367 Ga0157378_10169186
368 Ga0163162_10062822
369 Ga0163162_10106266
370 Ga0157375_10198508
371 Ga0182008_10003079
372 Ga0182008_10009373
373 Ga0157377_10118490
374 Ga0157376_10065057
375 Ga0182006_1034621
376 Ga0182007_10001612
377 Ga0182005_1003447
378 Ga0206349_1843067
379 Ga0213872_10010289
380 Ga0213874_10012120
381 Ga0224712_10017648
382 Ga0209436_100025
383 Ga0209566_100108
384 Ga0209437_100040
385 Ga0209437_113615
386 Ga0209677_103603
387 Ga0209148_1007526
388 Ga0209233_1000051
389 Ga0209233_1000201
390 Ga0209673_1002654
391 Ga0209130_1000001
392 Ga0209130_1000152
393 Ga0209025_1001813
394 Ga0209025_1018259
395 Ga0209564_1001131
396 Ga0209758_1009075
397 Ga0209758_1009077
398 Ga0209758_1021162
399 Ga0207426_1000017
400 Ga0207426_1000045
401 Ga0207645_10235357
402 Ga0207684_10006080
403 Ga0207695_10000097
404 Ga0207695_10140302
405 Ga0207671_10000023
406 Ga0207646_10004115
407 Ga0207681_10155476
408 Ga0207650_10117095
409 Ga0207659_10266614
410 Ga0207700_10060552
411 Ga0207670_10080186
412 Ga0207691_10017392
413 Ga0207651_10086252
414 Ga0207651_10211754
415 Ga0207668_10016407
416 Ga0207658_10052170
417 Ga0207678_10241208
418 Ga0207683_10062169
419 Ga0207683_10126551
420 Ga0207698_10013474
421 Ga0209371_1004446
422 Ga0268266_10069658
423 Ga0268265_10016306
424 Ga0268256_1004952
425 Ga0307513_10165675
426 Ga0307405_10063819
427 Ga0316577_10084585
428 Ga0307407_10075187
429 Ga0307409_100068778
430 Ga0307415_100105717
431 Ga0307510_10107619
432 Ga0373955_0031145
433 Ga0316574_0003981
434 Ga0373935_0089719
435 Ga0316584_0176877
436 Ga0436365_0145109
437 Ga0436361_0429530
438 Ga0436361_1050599
439 Ga0436363_0521706
440 Ga0439435_0000606
441 Ga0466969_0000488
442 Ga0466969_0044916
443 Ga0466965_0019845
444 Ga0466966_0002894
445 Ga0466966_0006492
446 Ga0466961_0036746
447 Ga0466964_0023162
448 Ga0453684_0015097
449 Ga0466968_0000151
450 Ga0466970_0000018
451 Ga0466957_0042661
452 Ga0466957_0053459
453 Ga0466959_0001466
454 Ga0466958_0003651
455 Ga0495592_0127567
456 Ga0495590_0046081
457 Ga0495629_0037898
458 Ga0495629_0230463
459 Ga0495638_0000323
460 Ga0495638_0058070
461 Ga0495639_0006482
462 Ga0495662_0003905
463 Ga0495606_0002584
464 Ga0495606_0082681
465 Ga0495610_0103209
466 Ga0495643_0044996
467 Ga0495643_0060220
468 Ga0495652_0237194
469 Ga0495586_0116605
470 Ga0495622_0004156
471 Ga0495656_0000173
472 Ga0495635_0211641
473 Ga0495657_0036476
474 Ga0495646_0083135
475 Ga0495600_0046290
476 Ga0495660_0012157
477 Ga0495672_0010083
478 Ga0495672_0019707
479 Ga0495686_0000499
480 Ga0495686_0005039
481 Ga0496101_0004837
482 Ga0496102_0006619
483 Ga0496102_0021810
484 Ga0496103_0026143
485 Ga0496103_0029304
486 Ga0496104_0001150
487 Ga0496105_0134935
488 Ga0496106_0000957
489 Ga0496106_0021404
490 Ga0496107_0308946
491 Ga0496109_0178772
492 Ga0496111_0062392
493 Ga0496113_0048457
494 Ga0496116_0009754
495 Ga0496117_0002639
496 Ga0496117_0068104
497 Ga0496118_0001296
498 Ga0496121_0003609
499 Ga0496121_0004314
500 Ga0496121_0120103
501 Ga0496121_0147542
502 Ga0496122_0028025
503 Ga0496122_0036335
504 Ga0496122_0037299
505 Ga0496123_0011464
506 Ga0496124_0007795
507 Ga0496124_0192179
508 Ga0496125_0008319
509 Ga0496125_0049908
510 Ga0496125_0095631
511 Ga0496126_0104084
512 Ga0501034_0107704
513 Ga0501034_0239136
514 Ga0501034_0289550
515 Ga0501037_0013126
516 Ga0501038_0056081
517 Ga0501038_0072739
518 Ga0501044_0021077
519 Ga0501044_0033933
520 nmdc:mga03683_18318_c1
521 nmdc:mga03683_83344_c1
522 nmdc:mga0yw44_37418_c1
523 nmdc:mga0k408_127077_c1
524 nmdc:mga0k408_21775_c1
525 nmdc:mga07m45_64971_c1
526 nmdc:mga05p37_383006_c1
527 nmdc:mga05p37_42614_c1
528 nmdc:mga08y16_105318_c1
529 nmdc:mga08y16_130529_c1
530 nmdc:mga0sz30_1476_c1
531 Ga0500651_0037832
532 Ga0500650_0103188
533 Ga0500618_001364
534 Ga0500658_0017149
535 Ga0500568_0000076
536 Ga0500568_0000410
537 Ga0500568_0001398
538 Ga0500590_000090
539 Ga0500604_0000220
540 Ga0500616_0001884
541 Ga0500622_0000215
542 Ga0500622_0030054
543 2511193922
544 2512730470
545 2514009854
546 2524457198
547 2585226981
548 2585278251
549 2585324925
550 2585332893
551 2585532089
552 2585550396
553 2585552450
554 2616307769
555 2616552246
556 2673819350
557 2819610157
558 2819640335
559 2824673025
560 2824693804
561 2841764787
562 2841948154
563 2842299248
564 2842358715
565 2842486986
566 2842512126
567 2844107765
568 2851185869
569 2851249871
570 2852394651
571 2907203127
572 2919107477
573 2925328550
574 2971408220
575 2980183383
576 3005416800
577 3005451120
578 8005320553
579 8005487569
580 8005647930
581 8005684218
582 8024490181
583 8046770687
584 8054803758
585 8057579938

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01408

GFO_IDH_MocA

Oxidoreductase family, NAD-binding Rossmann fold

1

117

0.93

PF22725

GFO_IDH_MocA_C3

GFO/IDH/MocA C-terminal domain

126

261

0.92

PF02894

GFO_IDH_MocA_C

Oxidoreductase family, C-terminal alpha/beta domain

135

348

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
7bvk-assembly2.cif.gz_B udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p212121) 0.8759 6 347
3e9m-assembly2.cif.gz_C-2 crystal structure of an oxidoreductase from enterococcus faecalis 0.8732 5 340
3evn-assembly1.cif.gz_A crystal structure of putative oxidoreductase from streptococcus agalactiae 2603v/r 0.8681 7 344
7bvk-assembly2.cif.gz_B udp-n-acetylglucosamine 3-dehydrogenase gnna from acidithiobacillus ferrooxidans (p212121) 0.857 6 347
1rye-assembly1.cif.gz_B crystal structure of the shifted form of the glucose-fructose oxidoreductase from zymomonas mobilis 0.8559 7 352
ID Description Score Start End Superfamily
af_M9PE54_6_126_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9581 6 119 3.40.50.720
3e18B01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9471 7 123 3.40.50.720
4hktB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9453 7 122 3.40.50.720
af_P39353_1_125_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9404 6 121 3.40.50.720
3rbvA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9401 5 121 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A6B1H9B9-F1-model_v4 Gfo/Idh/MocA family oxidoreductase 0.9847 4 120 GO:0000166
AF-A0A7X6IQM2-F1-model_v4 deleted 0.9778 151 286
AF-A0A3B8VPJ9-F1-model_v4 Oxidoreductase 0.974 30 256 GO:0000166
GO:0016491
AF-A0A6B1H9B9-F1-model_v4 Gfo/Idh/MocA family oxidoreductase 0.9683 4 120 GO:0000166
AF-A0A4Q3RX11-F1-model_v4 Gfo/Idh/MocA family oxidoreductase 0.9666 1 123 GO:0000166
GO:0003824

Map