F389528

General Info

Members Datasets Scaffolds Average Seq Length
290 212 581 217

Family's Representative Sequence

Representative Sequence 3300001989|JGI24739J22299_10038600|JGI24739J22299_100386001
Length 237
Sequence VLCFLWRLELKVTIRVLLADDQTLIRSGFRVLVSSAPDLEVVAEASNGRDAVELARSERADVVLMDIRMPEVDGLAATRMITADEALAGVKVLILTTFEVDEYVFDAIRAGASGFLGKSVEPAELIDAIRVVARGDALLSPKAVRGLMNRFLAEPTAGHAIGAGLLDALTDREREIVGLVALGLSNDEIADRLVLSPSTAKTHVNRAMVKLDCRDRAQLVVLAYQTGLVRPGVPQPR

Samples

Sample ID Description Type Environment
1 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
2 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
3 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
14 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
21 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
22 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
23 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
24 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
25 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
29 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
30 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
31 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
34 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
35 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
36 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
37 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
38 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
39 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
57 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
58 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
59 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
60 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
61 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
62 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
63 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
64 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
65 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
66 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
67 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
68 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
69 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
70 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
71 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
72 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
73 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
74 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
75 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
76 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
77 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
78 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
79 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
80 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
81 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
82 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
83 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
84 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
85 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
86 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
87 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
88 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
89 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
90 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
91 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
92 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
93 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
94 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
95 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
96 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
97 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
98 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
99 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
100 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
101 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
102 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
103 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
104 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
105 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
106 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
107 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
108 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
109 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
110 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
111 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
112 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
113 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
114 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
115 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
116 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
117 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
118 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
119 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
120 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
121 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
122 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
123 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
124 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
125 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
126 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
127 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
128 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
129 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
130 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
131 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
132 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
133 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
134 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
135 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
136 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
137 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
138 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
139 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
140 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
141 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
142 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
143 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
144 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
145 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
146 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
147 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
148 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
149 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
150 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
151 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
152 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
153 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
154 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
155 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
157 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
158 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
159 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
160 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
161 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
162 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
163 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
164 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
165 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
166 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
167 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
168 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
169 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
170 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
171 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
172 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
173 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
174 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
175 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
176 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
177 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
178 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
179 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
180 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
181 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
182 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
183 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
184 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
185 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
186 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
187 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
188 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
189 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
190 2508501039 Frankia saprophytica CN3 Isolate Nodule
191 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
192 2582581312 Streptomyces atratus OK008 Isolate Rhizosphere
193 2643221578 Streptomyces sp. Root63 Isolate Unclassified
194 2643221673 Streptomyces sp. Root1295 Isolate Unclassified
195 2643221690 Cellulomonas sp. Root485 Isolate Unclassified
196 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
197 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
198 2675903058 Actinopolymorpha cephalotaxi CPCC 202808 Isolate Rhizosphere
199 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
200 2811994879 Streptomyces sp. 4-17 Isolate Unclassified
201 2827628540 Actinopolymorpha cephalotaxi DSM 45117 Isolate Rhizosphere
202 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
203 2867369537 Streptomyces sp. Z26 Isolate Unclassified
204 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
205 2919713450 Nocardia kruczakiae 4272 Isolate Rhizosphere
206 2946045630 Streptomyces sp. W4I9-2 Isolate Rhizosphere
207 2946064051 Streptomyces luteogriseus W4I19-1 Isolate Rhizosphere
208 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified
209 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
210 8003856774 Micromonospora echinofusca MPMI6 Isolate Unclassified
211 8033684223 Streptomyces phytophilus PIP175 Isolate Unclassified
212 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 91.38
Metatranscriptomes 0
Isolates 8.62

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.1
Nodule 0.34
Rhizoplane 8.97
Rhizosphere 77.93
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10038600 3300001989 Bacteria 1604
2 JGI24739J22299_10017859 3300001989 Bacteria 2556
3 JGI24735J21928_10070781 3300002067 Bacteria 999
4 rootH1_10137265 3300003316 Bacteria 1593
5 rootH1_10137265 3300003323 Bacteria 3744
6 rootL2_10054609 3300003322 Bacteria 2755
7 Ga0068869_100731084 3300005334 Bacteria 846
8 Ga0070692_10177869 3300005345 Bacteria 1231
9 Ga0070668_100022424 3300005347 Bacteria 4773
10 Ga0070667_100118109 3300005367 Bacteria 2305
11 Ga0070667_100191249 3300005367 Bacteria 1813
12 Ga0070714_100000685 3300005435 Bacteria 23915
13 Ga0070714_100076002 3300005435 Bacteria 2915
14 Ga0070714_100095178 3300005435 Bacteria 2615
15 Ga0070714_100411616 3300005435 Bacteria 1280
16 Ga0070713_100001510 3300005436 Bacteria 14826
17 Ga0070713_100010859 3300005436 Bacteria 6602
18 Ga0070713_100207225 3300005436 Bacteria 1773
19 Ga0070710_10005473 3300005437 Bacteria 6034
20 Ga0070711_100008305 3300005439 Bacteria 6355
21 Ga0070663_100001357 3300005455 Bacteria 13376
22 Ga0070707_100086276 3300005468 Bacteria 3035
23 Ga0070684_100634691 3300005535 Bacteria 994
24 Ga0068856_100130669 3300005614 Bacteria 2516
25 Ga0068864_100335181 3300005618 Bacteria 1424
26 Ga0068863_100166565 3300005841 Bacteria 2113
27 Ga0068862_100106150 3300005844 Bacteria 2462
28 Ga0081538_10001361 3300005981 Bacteria 25143
29 Ga0081539_10001722 3300005985 Bacteria 34982
30 Ga0070717_10181654 3300006028 Bacteria 1834
31 Ga0075365_10175258 3300006038 Bacteria 1498
32 Ga0075363_100038212 3300006048 Bacteria 2524
33 Ga0075363_100370516 3300006048 Bacteria 838
34 Ga0070716_100006057 3300006173 Bacteria 5894
35 Ga0070712_100038526 3300006175 Bacteria 3267
36 Ga0075428_100000122 3300006844 Bacteria 67543
37 Ga0075430_100350634 3300006846 Bacteria 1219
38 Ga0075431_100116372 3300006847 Bacteria 2759
39 Ga0111539_11000301 3300009094 Bacteria 972
40 Ga0105245_10010451 3300009098 Bacteria 8081
41 Ga0114129_10114470 3300009147 Bacteria 3719
42 Ga0105248_10182716 3300009177 Bacteria 2363
43 Ga0157369_11093605 3300013105 Bacteria 815
44 Ga0157372_10082853 3300013307 Bacteria 3632
45 Ga0157375_10445023 3300013308 Bacteria 1461
46 Ga0157379_10161242 3300014968 Bacteria 2024
47 Ga0213874_10004566 3300021377 Bacteria 3175
48 Ga0207692_10000297 3300025898 Bacteria 17196
49 Ga0207692_10014282 3300025898 Bacteria 3467
50 Ga0207699_10166331 3300025906 Bacteria 1472
51 Ga0207684_10222176 3300025910 Bacteria 1630
52 Ga0207693_10035549 3300025915 Bacteria 3927
53 Ga0207663_10195549 3300025916 Bacteria 1455
54 Ga0207646_10102629 3300025922 Bacteria 2564
55 Ga0207687_10040249 3300025927 Bacteria 3203
56 Ga0207700_10023351 3300025928 Bacteria 4261
57 Ga0207700_10025428 3300025928 Bacteria 4110
58 Ga0207700_10095062 3300025928 Bacteria 2363
59 Ga0207700_10142934 3300025928 Bacteria 1968
60 Ga0207664_10000495 3300025929 Bacteria 28038
61 Ga0207664_10007195 3300025929 Bacteria 7707
62 Ga0207665_10025157 3300025939 Bacteria 3927
63 Ga0207668_10023789 3300025972 Bacteria 3944
64 Ga0207668_10085402 3300025972 Bacteria 2303
65 Ga0207658_10143937 3300025986 Bacteria 1933
66 Ga0207658_10523867 3300025986 Bacteria 1058
67 Ga0207678_10000846 3300026067 Bacteria 28056
68 Ga0207678_10827996 3300026067 Bacteria 817
69 Ga0207702_10106366 3300026078 Bacteria 2486
70 Ga0207702_10421599 3300026078 Bacteria 1291
71 Ga0207676_10309209 3300026095 Bacteria 1446
72 Ga0268266_10220934 3300028379 Bacteria 1742
73 Ga0268265_10132958 3300028380 Bacteria 2071
74 Ga0307515_10233919 3300028794 Bacteria 1623
75 Ga0307511_10145129 3300030521 Bacteria 1381
76 Ga0307512_10021056 3300030522 Bacteria 5887
77 Ga0307512_10106860 3300030522 Bacteria 1865
78 Ga0307408_100108858 3300031548 Bacteria 2125
79 Ga0307410_10264665 3300031852 Bacteria 1342
80 Ga0307406_10045805 3300031901 Bacteria 2748
81 Ga0307407_10326222 3300031903 Bacteria 1079
82 Ga0307412_10175608 3300031911 Bacteria 1606
83 Ga0307416_100609646 3300032002 Bacteria 1172
84 Ga0307414_10408011 3300032004 Bacteria 1182
85 Ga0307415_100052377 3300032126 Bacteria 2775
86 Ga0307507_10020941 3300033179 Bacteria 7301
87 Ga0373938_0018927 3300034957 Bacteria 1372
88 Ga0373940_0002322 3300035088 Bacteria 3677
89 Ga0373941_0016525 3300035115 Bacteria 2008
90 Ga0373942_0001149 3300035207 Bacteria 7026
91 Ga0373961_0063121 3300035241 Bacteria 1129
92 Ga0373962_0039338 3300035242 Bacteria 1326
93 Ga0436364_0929944 3300037853 Bacteria 3488
94 Ga0395901_0105828 3300038443 Bacteria 2953
95 Ga0451833_1270117 3300041491 Bacteria 1056
96 Ga0450918_004035 3300042531 Bacteria 2696
97 Ga0466969_0000333 3300044656 Bacteria 26115
98 Ga0466969_0001843 3300044656 Bacteria 11335
99 Ga0466969_0002603 3300044656 Bacteria 9644
100 Ga0466969_0043049 3300044656 Bacteria 2251
101 Ga0466969_0125787 3300044656 Bacteria 1191
102 Ga0466972_0086505 3300044658 Bacteria 1490
103 Ga0466972_0146938 3300044658 Bacteria 1109
104 Ga0466965_0013586 3300044683 Bacteria 3844
105 Ga0466965_0075678 3300044683 Bacteria 1698
106 Ga0466966_0002170 3300044684 Bacteria 12742
107 Ga0466966_0008844 3300044684 Bacteria 6669
108 Ga0466966_0032552 3300044684 Bacteria 3378
109 Ga0466961_0017526 3300044693 Bacteria 4602
110 Ga0466961_0028371 3300044693 Bacteria 3599
111 Ga0466961_0044646 3300044693 Bacteria 2836
112 Ga0466971_0001759 3300044719 Bacteria 9191
113 Ga0466971_0061836 3300044719 Bacteria 1694
114 Ga0466968_0025569 3300044735 Bacteria 2418
115 Ga0466968_0087207 3300044735 Bacteria 1378
116 Ga0466968_0133242 3300044735 Bacteria 1132
117 Ga0466970_0044264 3300044765 Bacteria 2369
118 Ga0466970_0168668 3300044765 Bacteria 1213
119 Ga0466957_0151226 3300044842 Bacteria 1501
120 Ga0466960_0018889 3300044901 Bacteria 3027
121 Ga0466959_0001555 3300045049 Bacteria 14115
122 Ga0466959_0011132 3300045049 Bacteria 6455
123 Ga0466959_0028747 3300045049 Bacteria 4120
124 Ga0466959_0080163 3300045049 Bacteria 2353
125 Ga0466958_0019293 3300045836 Bacteria 3968
126 Ga0466958_0023230 3300045836 Bacteria 3637
127 Ga0466958_0174496 3300045836 Bacteria 1362
128 Ga0466958_0243709 3300045836 Bacteria 1149
129 Ga0466958_0310100 3300045836 Bacteria 1014
130 Ga0466967_0015231 3300045976 Bacteria 6023
131 Ga0466967_0167618 3300045976 Bacteria 2065
132 Ga0466967_0256294 3300045976 Bacteria 1673
133 Ga0466967_0598936 3300045976 Bacteria 1087
134 Ga0495627_020151 3300046453 Bacteria 2226
135 Ga0495592_0251921 3300046454 Bacteria 1166
136 Ga0495603_0027363 3300046455 Bacteria 3441
137 Ga0495629_0001435 3300046459 Bacteria 18784
138 Ga0495651_0000405 3300046462 Bacteria 33331
139 Ga0495653_0011270 3300046463 Bacteria 7306
140 Ga0495580_0005058 3300046472 Bacteria 10992
141 Ga0495639_0211082 3300046475 Bacteria 952
142 Ga0495662_0006172 3300046476 Bacteria 5990
143 Ga0495664_0004741 3300046477 Bacteria 7431
144 Ga0495594_0007568 3300046499 Bacteria 5589
145 Ga0495606_0002575 3300046507 Bacteria 20769
146 Ga0495608_0000431 3300046511 Bacteria 29189
147 Ga0495618_0086254 3300046514 Bacteria 2007
148 Ga0495628_0017144 3300046516 Bacteria 6033
149 Ga0495630_0124896 3300046517 Bacteria 1952
150 Ga0495666_0004651 3300046526 Bacteria 6944
151 Ga0495652_0041912 3300046529 Bacteria 3948
152 Ga0495665_0004577 3300046531 Bacteria 7466
153 Ga0495640_0029937 3300046533 Bacteria 3901
154 Ga0495586_0005619 3300046535 Bacteria 6710
155 Ga0495587_0019470 3300046536 Bacteria 4199
156 Ga0495645_0010653 3300046543 Bacteria 6454
157 Ga0495645_0010765 3300046543 Bacteria 6425
158 Ga0495667_0056387 3300046559 Bacteria 2583
159 Ga0495668_0001194 3300046616 Bacteria 26375
160 Ga0495634_0039866 3300046642 Bacteria 3196
161 Ga0495625_0000514 3300046660 Bacteria 57169
162 Ga0495635_0027242 3300046663 Bacteria 3975
163 Ga0495588_0014510 3300046674 Bacteria 3773
164 Ga0495657_0001154 3300046675 Bacteria 23164
165 Ga0495599_0141305 3300046678 Bacteria 1493
166 Ga0495623_0001747 3300046679 Bacteria 14598
167 Ga0495613_0003259 3300046689 Bacteria 12139
168 Ga0495670_0190982 3300046691 Bacteria 1083
169 Ga0495671_0199297 3300046692 Bacteria 971
170 Ga0495600_0007711 3300046809 Bacteria 6592
171 Ga0495581_0042238 3300047315 Bacteria 2639
172 Ga0495604_0000492 3300047317 Bacteria 34661
173 Ga0495674_0141702 3300047319 Bacteria 2020
174 Ga0495672_0001092 3300047320 Bacteria 27531
175 Ga0495676_0118157 3300047321 Bacteria 1933
176 Ga0495675_0005722 3300047444 Bacteria 7601
177 Ga0495675_0099929 3300047444 Bacteria 1816
178 Ga0495684_0000919 3300047471 Bacteria 23894
179 Ga0495593_0039258 3300047673 Bacteria 2553
180 Ga0495602_0254180 3300048088 Bacteria 1307
181 Ga0495626_0000155 3300048091 Bacteria 85062
182 Ga0496100_0041655 3300048903 Bacteria 2929
183 Ga0496100_0512032 3300048903 Bacteria 925
184 Ga0496100_0622969 3300048903 Bacteria 839
185 Ga0496101_0164733 3300048904 Bacteria 1702
186 Ga0496102_0005077 3300048905 Bacteria 11147
187 Ga0496102_0079740 3300048905 Bacteria 3015
188 Ga0496103_0076048 3300048906 Bacteria 2106
189 Ga0496104_0002613 3300048907 Bacteria 15513
190 Ga0496105_0007922 3300048908 Bacteria 8254
191 Ga0496105_0009735 3300048908 Bacteria 7526
192 Ga0496105_0054184 3300048908 Bacteria 3312
193 Ga0496105_0567882 3300048908 Bacteria 884
194 Ga0496107_0268308 3300048910 Bacteria 1270
195 Ga0496108_0002885 3300048911 Bacteria 13794
196 Ga0496108_0086510 3300048911 Bacteria 2661
197 Ga0496109_0026840 3300048912 Bacteria 5137
198 Ga0496110_0053779 3300048913 Bacteria 3541
199 Ga0496112_0005246 3300048915 Bacteria 11157
200 Ga0496112_0016250 3300048915 Bacteria 6965
201 Ga0496113_0025861 3300048916 Bacteria 4190
202 Ga0496113_0042296 3300048916 Bacteria 3366
203 Ga0496113_0052127 3300048916 Bacteria 3055
204 Ga0496114_0023911 3300048917 Bacteria 4986
205 Ga0496114_0046710 3300048917 Bacteria 3599
206 Ga0496114_0214536 3300048917 Bacteria 1688
207 Ga0496115_0339751 3300048918 Bacteria 1226
208 Ga0496116_0000136 3300048919 Bacteria 153155
209 Ga0496118_0004558 3300048921 Bacteria 16341
210 Ga0501031_0092141 3300049568 Bacteria 1977
211 Ga0501032_0000888 3300049569 Bacteria 24229
212 Ga0501032_0154227 3300049569 Bacteria 1509
213 Ga0501034_0127983 3300049571 Bacteria 2524
214 Ga0501036_0054200 3300049572 Bacteria 3396
215 Ga0501036_0152249 3300049572 Bacteria 1951
216 Ga0501036_0251290 3300049572 Bacteria 1482
217 Ga0501037_0000898 3300049573 Bacteria 22178
218 Ga0501038_0030742 3300049574 Bacteria 4748
219 Ga0501038_0074834 3300049574 Bacteria 2864
220 Ga0501039_0094441 3300049575 Bacteria 2331
221 Ga0501040_0161260 3300049576 Bacteria 1585
222 Ga0501042_0186133 3300049578 Bacteria 1498
223 Ga0501043_0000276 3300049579 Bacteria 46306
224 Ga0501047_0716615 3300049581 Bacteria 817
225 Ga0501047_0770954 3300049581 Bacteria 777
226 Ga0501048_0344258 3300049582 Bacteria 1063
227 Ga0501048_0508004 3300049582 Bacteria 864
228 Ga0501068_0011143 3300049584 Bacteria 5066
229 Ga0501068_0359120 3300049584 Bacteria 937
230 Ga0501069_0367970 3300049585 Bacteria 848
231 Ga0501070_0001879 3300049586 Bacteria 18565
232 Ga0501070_0611627 3300049586 Bacteria 868
233 Ga0501071_0359769 3300049587 Bacteria 1108
234 Ga0501072_0138571 3300049588 Bacteria 1940
235 Ga0501072_0500190 3300049588 Bacteria 961
236 Ga0501073_0029414 3300049589 Bacteria 3927
237 Ga0501074_0352070 3300049590 Bacteria 1045
238 Ga0501075_0036607 3300049591 Bacteria 3663
239 Ga0501076_0018610 3300049592 Bacteria 5299
240 Ga0501076_0065973 3300049592 Bacteria 2888
241 Ga0501076_0087279 3300049592 Bacteria 2508
242 Ga0501080_0329958 3300049742 Bacteria 1380
243 Ga0501081_0182814 3300049743 Bacteria 1517
244 Ga0501081_0533691 3300049743 Bacteria 876
245 Ga0501044_0425197 3300049823 Bacteria 1238
246 Ga0501044_0512933 3300049823 Bacteria 1099
247 Ga0501045_0140552 3300049824 Bacteria 1795
248 Ga0501045_0481046 3300049824 Bacteria 922
249 nmdc:mga03n38_196636_c1 3300050490 Bacteria 1041
250 nmdc:mga03n38_392784_c1 3300050490 Bacteria 762
251 nmdc:mga06z11_108256_c1 3300050494 Bacteria 1535
252 nmdc:mga0qj67_566866_c1 3300050509 Bacteria 910
253 nmdc:mga06r32_105688_c1 3300050510 Bacteria 2766
254 nmdc:mga06r32_429785_c1 3300050510 Bacteria 1301
255 Ga0495601_0002057 3300053077 Bacteria 11279
256 Ga0500560_006230 3300053107 Bacteria 2713
257 Ga0500568_0000047 3300053139 Bacteria 120511
258 Ga0500573_0052279 3300053140 Bacteria 2349
259 Ga0501084_0466606 3300054114 Bacteria 1067
260 Ga0501082_0020846 3300060353 Bacteria 5654
261 Ga0501082_0129192 3300060353 Bacteria 2192
262 Ga0501082_0707451 3300060353 Bacteria 882
263 Ga0466962_0010201 3300061719 Bacteria 4512
264 Ga0466962_0013059 3300061719 Bacteria 3995
265 Ga0466962_0290515 3300061719 Bacteria 808
266 Ga0530510_0544302 3300061734 Bacteria 881
267 2508676535 2508501039 Bacteria 9978592
268 2558914247 2558860112 Bacteria 9931328
269 2585297015 2582581312 Bacteria 7308206
270 2643897972 2643221578 Bacteria 9213798
271 2644409118 2643221673 Bacteria 9196637
272 2644506659 2643221690 Bacteria 4654705
273 2645722220 2643221961 Bacteria 3919167
274 2645725090 2643221962 Bacteria 3874254
275 2676473167 2675903058 Bacteria 6822861
276 2808919677 2808606375 Bacteria 9466072
277 2812353725 2811994879 Bacteria 9313447
278 2827633342 2827628540 Bacteria 6858585
279 2866612409 2866612099 Bacteria 7543886
280 2867371806 2867369537 Bacteria 6501581
281 2870628909 2870628048 Bacteria 3696012
282 2919718059 2919713450 Bacteria 7431245
283 2946050771 2946045630 Bacteria 8527308
284 2946071977 2946064051 Bacteria 8957905
285 2995467836 2995463766 Bacteria 8577691
286 2995469163 2995463766 Bacteria 8577691
287 2995469617 2995463766 Bacteria 8577691
288 8003323350 8003314358 Bacteria 10575343
289 8003858719 8003856774 Bacteria 7675274
290 8033688330 8033684223 Bacteria 6906479
291 8053951397 8053945823 Bacteria 8962862
292 JGI24739J22299_10038600
293 JGI24739J22299_10017859
294 JGI24735J21928_10070781
295 rootH1_10137265
296 rootL2_10054609
297 Ga0068869_100731084
298 Ga0070692_10177869
299 Ga0070668_100022424
300 Ga0070667_100118109
301 Ga0070667_100191249
302 Ga0070714_100000685
303 Ga0070714_100076002
304 Ga0070714_100095178
305 Ga0070714_100411616
306 Ga0070713_100001510
307 Ga0070713_100010859
308 Ga0070713_100207225
309 Ga0070710_10005473
310 Ga0070711_100008305
311 Ga0070663_100001357
312 Ga0070707_100086276
313 Ga0070684_100634691
314 Ga0068856_100130669
315 Ga0068864_100335181
316 Ga0068863_100166565
317 Ga0068862_100106150
318 Ga0081538_10001361
319 Ga0081539_10001722
320 Ga0070717_10181654
321 Ga0075365_10175258
322 Ga0075363_100038212
323 Ga0075363_100370516
324 Ga0070716_100006057
325 Ga0070712_100038526
326 Ga0075428_100000122
327 Ga0075430_100350634
328 Ga0075431_100116372
329 Ga0111539_11000301
330 Ga0105245_10010451
331 Ga0114129_10114470
332 Ga0105248_10182716
333 Ga0157369_11093605
334 Ga0157372_10082853
335 Ga0157375_10445023
336 Ga0157379_10161242
337 Ga0213874_10004566
338 Ga0207692_10000297
339 Ga0207692_10014282
340 Ga0207699_10166331
341 Ga0207684_10222176
342 Ga0207693_10035549
343 Ga0207663_10195549
344 Ga0207646_10102629
345 Ga0207687_10040249
346 Ga0207700_10023351
347 Ga0207700_10025428
348 Ga0207700_10095062
349 Ga0207700_10142934
350 Ga0207664_10000495
351 Ga0207664_10007195
352 Ga0207665_10025157
353 Ga0207668_10023789
354 Ga0207668_10085402
355 Ga0207658_10143937
356 Ga0207658_10523867
357 Ga0207678_10000846
358 Ga0207678_10827996
359 Ga0207702_10106366
360 Ga0207702_10421599
361 Ga0207676_10309209
362 Ga0268266_10220934
363 Ga0268265_10132958
364 Ga0307515_10233919
365 Ga0307511_10145129
366 Ga0307512_10021056
367 Ga0307512_10106860
368 Ga0307408_100108858
369 Ga0307410_10264665
370 Ga0307406_10045805
371 Ga0307407_10326222
372 Ga0307412_10175608
373 Ga0307416_100609646
374 Ga0307414_10408011
375 Ga0307415_100052377
376 Ga0307507_10020941
377 Ga0373938_0018927
378 Ga0373940_0002322
379 Ga0373941_0016525
380 Ga0373942_0001149
381 Ga0373961_0063121
382 Ga0373962_0039338
383 Ga0436364_0929944
384 Ga0395901_0105828
385 Ga0451833_1270117
386 Ga0450918_004035
387 Ga0466969_0000333
388 Ga0466969_0001843
389 Ga0466969_0002603
390 Ga0466969_0043049
391 Ga0466969_0125787
392 Ga0466972_0086505
393 Ga0466972_0146938
394 Ga0466965_0013586
395 Ga0466965_0075678
396 Ga0466966_0002170
397 Ga0466966_0008844
398 Ga0466966_0032552
399 Ga0466961_0017526
400 Ga0466961_0028371
401 Ga0466961_0044646
402 Ga0466971_0001759
403 Ga0466971_0061836
404 Ga0466968_0025569
405 Ga0466968_0087207
406 Ga0466968_0133242
407 Ga0466970_0044264
408 Ga0466970_0168668
409 Ga0466957_0151226
410 Ga0466960_0018889
411 Ga0466959_0001555
412 Ga0466959_0011132
413 Ga0466959_0028747
414 Ga0466959_0080163
415 Ga0466958_0019293
416 Ga0466958_0023230
417 Ga0466958_0174496
418 Ga0466958_0243709
419 Ga0466958_0310100
420 Ga0466967_0015231
421 Ga0466967_0167618
422 Ga0466967_0256294
423 Ga0466967_0598936
424 Ga0495627_020151
425 Ga0495592_0251921
426 Ga0495603_0027363
427 Ga0495629_0001435
428 Ga0495651_0000405
429 Ga0495653_0011270
430 Ga0495580_0005058
431 Ga0495639_0211082
432 Ga0495662_0006172
433 Ga0495664_0004741
434 Ga0495594_0007568
435 Ga0495606_0002575
436 Ga0495608_0000431
437 Ga0495618_0086254
438 Ga0495628_0017144
439 Ga0495630_0124896
440 Ga0495666_0004651
441 Ga0495652_0041912
442 Ga0495665_0004577
443 Ga0495640_0029937
444 Ga0495586_0005619
445 Ga0495587_0019470
446 Ga0495645_0010653
447 Ga0495645_0010765
448 Ga0495667_0056387
449 Ga0495668_0001194
450 Ga0495634_0039866
451 Ga0495625_0000514
452 Ga0495635_0027242
453 Ga0495588_0014510
454 Ga0495657_0001154
455 Ga0495599_0141305
456 Ga0495623_0001747
457 Ga0495613_0003259
458 Ga0495670_0190982
459 Ga0495671_0199297
460 Ga0495600_0007711
461 Ga0495581_0042238
462 Ga0495604_0000492
463 Ga0495674_0141702
464 Ga0495672_0001092
465 Ga0495676_0118157
466 Ga0495675_0005722
467 Ga0495675_0099929
468 Ga0495684_0000919
469 Ga0495593_0039258
470 Ga0495602_0254180
471 Ga0495626_0000155
472 Ga0496100_0041655
473 Ga0496100_0512032
474 Ga0496100_0622969
475 Ga0496101_0164733
476 Ga0496102_0005077
477 Ga0496102_0079740
478 Ga0496103_0076048
479 Ga0496104_0002613
480 Ga0496105_0007922
481 Ga0496105_0009735
482 Ga0496105_0054184
483 Ga0496105_0567882
484 Ga0496107_0268308
485 Ga0496108_0002885
486 Ga0496108_0086510
487 Ga0496109_0026840
488 Ga0496110_0053779
489 Ga0496112_0005246
490 Ga0496112_0016250
491 Ga0496113_0025861
492 Ga0496113_0042296
493 Ga0496113_0052127
494 Ga0496114_0023911
495 Ga0496114_0046710
496 Ga0496114_0214536
497 Ga0496115_0339751
498 Ga0496116_0000136
499 Ga0496118_0004558
500 Ga0501031_0092141
501 Ga0501032_0000888
502 Ga0501032_0154227
503 Ga0501034_0127983
504 Ga0501036_0054200
505 Ga0501036_0152249
506 Ga0501036_0251290
507 Ga0501037_0000898
508 Ga0501038_0030742
509 Ga0501038_0074834
510 Ga0501039_0094441
511 Ga0501040_0161260
512 Ga0501042_0186133
513 Ga0501043_0000276
514 Ga0501047_0716615
515 Ga0501047_0770954
516 Ga0501048_0344258
517 Ga0501048_0508004
518 Ga0501068_0011143
519 Ga0501068_0359120
520 Ga0501069_0367970
521 Ga0501070_0001879
522 Ga0501070_0611627
523 Ga0501071_0359769
524 Ga0501072_0138571
525 Ga0501072_0500190
526 Ga0501073_0029414
527 Ga0501074_0352070
528 Ga0501075_0036607
529 Ga0501076_0018610
530 Ga0501076_0065973
531 Ga0501076_0087279
532 Ga0501080_0329958
533 Ga0501081_0182814
534 Ga0501081_0533691
535 Ga0501044_0425197
536 Ga0501044_0512933
537 Ga0501045_0140552
538 Ga0501045_0481046
539 nmdc:mga03n38_196636_c1
540 nmdc:mga03n38_392784_c1
541 nmdc:mga06z11_108256_c1
542 nmdc:mga0qj67_566866_c1
543 nmdc:mga06r32_105688_c1
544 nmdc:mga06r32_429785_c1
545 Ga0495601_0002057
546 Ga0500560_006230
547 Ga0500568_0000047
548 Ga0500573_0052279
549 Ga0501084_0466606
550 Ga0501082_0020846
551 Ga0501082_0129192
552 Ga0501082_0707451
553 Ga0466962_0010201
554 Ga0466962_0013059
555 Ga0466962_0290515
556 Ga0530510_0544302
557 2508676535
558 2558914247
559 2585297015
560 2643897972
561 2644409118
562 2644506659
563 2645722220
564 2645725090
565 2676473167
566 2808919677
567 2812353725
568 2827633342
569 2866612409
570 2867371806
571 2870628909
572 2919718059
573 2946050771
574 2946071977
575 2995467836
576 2995469163
577 2995469617
578 8003323350
579 8003858719
580 8033688330
581 8053951397

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

16

130

0.97

PF00196

GerE

Bacterial regulatory proteins, luxR family

167

223

0.97

PF08281

Sigma70_r4_2

Sigma-70, region 4

163

211

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
7ve6-assembly1.cif.gz_B n-terminal domain of vrar 0.9866 6 126
1zlj-assembly4.cif.gz_H crystal structure of the mycobacterium tuberculosis hypoxic response regulator dosr c-terminal domain 0.9688 155 216
6ekh-assembly1.cif.gz_Y crystal structure of activated chey from methanoccocus maripaludis 0.968 6 118
5iul-assembly1.cif.gz_C crystal structure of the desk-desr complex in the phosphotransfer state with high mg2+ (150 mm) and bef3 0.9671 6 126
7ssi-assembly1.cif.gz_C crystal structure of the desk:desr-q10a complex in the phosphotransfer state 0.9666 6 126
ID Description Score Start End Superfamily
4if4D01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9868 6 126 3.40.50.2300
af_P06993_830_894_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9728 159 212 1.10.10.10
4le0B00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9712 6 126 3.40.50.2300
6ekhY00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.968 6 118 3.40.50.2300
1zlkB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.964 155 216 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A3A4WXB8-F1-model_v4 DNA-binding response regulator 0.9847 2 126 GO:0000160
GO:0003677
AF-K9TAR8-F1-model_v4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 0.9702 1 126 GO:0000160
GO:0003677
GO:0016020
AF-A0A7W7GCV9-F1-model_v4 DNA-binding NarL/FixJ family response regulator 0.9677 24 220 GO:0000160
GO:0003677
GO:0006355
AF-G9WXZ7-F1-model_v4 Stage 0 sporulation protein A homolog 0.967 6 142 GO:0000160
AF-A0A5S4G580-F1-model_v4 Response regulator transcription factor 0.9647 1 220 GO:0000160
GO:0003677
GO:0006355

Map