F384236

General Info

Members Datasets Scaffolds Average Seq Length
281 247 151 364

Family's Representative Sequence

Representative Sequence 3300006944|Ga0099823_1054608|Ga0099823_10546082
Length 421
Sequence MRVVICGGGVIGACTAWFLRRRGIDVIVVERTEVAAAASGKAGGFLAGDWCAGTPLDALARRSFALHAQLPEQIAGDWGYRAMSAYSGFVAADSDPRRDSPSALGWLSDGVIIAQRIGTPKTTSIVHPGKFTSATMNGALALGAELRLGRVTGIVRDADEIAAKGVEVEGSVIEADAVVIAMGPWSLLAAQWMSLPAVYGQRSPSIVYDTGADVPADALFLEHEDGGNAVSIEVFPRADGSTHITALSDVAPLPLDPAAVTPDQDAIARLQAMSERLSPLFRPEKIIARQACFRPVTQDGLPLIGKVPHSEGLYVATGHNVWGILNAPATGEALAQLIAEGTTQIDLSPFDPARLSPLAVATASALTWTVACWQRTCIGADEICMPAPLSICATLDFSPPLTILNAVSLAENALAGIVAPQ

Samples

Sample ID Description Type Environment
1 2508501042 Bradyrhizobium sp. WSM1253 Isolate Nodule
2 2513237094 Bradyrhizobium sp. WSM3983 Isolate Nodule
3 2513237095 Bradyrhizobium diazoefficiens USDA 122 Isolate Nodule
4 2513237104 Bradyrhizobium sp. EC3.3 Isolate Nodule
5 2515154112 Bradyrhizobium sp. WSM4349 Isolate Nodule
6 2517093001 Bradyrhizobium japonicum USDA 124 Isolate Nodule
7 2528768022 Bradyrhizobium japonicum USDA 123 Isolate Nodule
8 2721755755 Bradyrhizobium icense LMTR 13 Isolate Nodule
9 2791355199
10 2816332527 Bradyrhizobium diazoefficiens Y21 Isolate Nodule
11 2824600985 Bradyrhizobium sp.HAMBI 2135 Isolate Unclassified
12 2824609381 Bradyrhizobium sp. HAMBI 2134 Isolate Unclassified
13 2824653114 Bradyrhizobium sp. HAMBI 2142 Isolate Unclassified
14 2824661429 Bradyrhizobium sp. HAMBI 2115 Isolate Unclassified
15 2824704595 Bradyrhizobium sp. HAMBI 2150 Isolate Unclassified
16 2824746037 Bradyrhizobium sp. HAMBI 2299 Isolate Unclassified
17 2824753945 Bradyrhizobium sp. HAMBI 2128 Isolate Unclassified
18 2824763712 Bradyrhizobium sp. HAMBI 2129 Isolate Unclassified
19 2841957949 Bradyrhizobium sp. CIR1 Isolate Nodule
20 2844315083 Bradyrhizobium guangzhouense CCBAU 51670 Isolate Unclassified
21 2847930680 Bradyrhizobium zhanjiangense CCBAU 51778 Isolate Unclassified
22 2857509624 Bradyrhizobium sp. R-73088 Isolate Unclassified
23 2874590934 Bradyrhizobium canariense UBMA181 Isolate Nodule
24 2874645413 Bradyrhizobium canariense UBMA122 Isolate Nodule
25 2876761206 Bradyrhizobium centrolobii BR 10245 Isolate Nodule
26 2876771140 Bradyrhizobium canariense UBMA192 Isolate Nodule
27 2876818435 Bradyrhizobium canariense UBMA195 Isolate Nodule
28 2879074833 Bradyrhizobium canariense UBMA171 Isolate Nodule
29 2879083081 Bradyrhizobium zhanjiangense CCBAU 51787 Isolate Unclassified
30 2879099564 Bradyrhizobium japonicum UBMA197 Isolate Nodule
31 2879127579 Bradyrhizobium canariense UBMA052 Isolate Nodule
32 2879142872 Bradyrhizobium canariense UBMA061 Isolate Nodule
33 2881364244 Bradyrhizobium sp. RP6 Isolate Unclassified
34 2885409591 Bradyrhizobium sp. NAS80.1 Isolate Unclassified
35 2888378607 Bradyrhizobium sp. LCT2 Isolate Unclassified
36 2888388044 Bradyrhizobium cosmicum 58S1 Isolate Unclassified
37 2888419890 Bradyrhizobium sp. 1(2017) 63S1MB Isolate Unclassified
38 2889033259 Bradyrhizobium sp. CCBAU 051011 Isolate Unclassified
39 2903727486 Bradyrhizobium guangzhouense CCBAU 53424 Isolate Unclassified
40 2904711408 Bradyrhizobium sp. USDA 3456 Isolate Unclassified
41 2906602504 Bradyrhizobium guangzhouense CCBAU 53426 Isolate Unclassified
42 2906643746 Bradyrhizobium genosp. SA-3 Rp7b Isolate Unclassified
43 2908775508 Bradyrhizobium sp. SUTN9-2 Isolate Unclassified
44 2922368715
45 2929615660 Bradyrhizobium japonicum TXVA Isolate Nodule
46 2929624759 Bradyrhizobium japonicum TXEA Isolate Nodule
47 2932784394 Bradyrhizobium sp. S3.2.12 Isolate Nodule
48 2932794094 Bradyrhizobium sp. S3.2.6 Isolate Nodule
49 2932801729 Bradyrhizobium sp. S3.3.6 Isolate Nodule
50 2932809354 Bradyrhizobium sp. S3.5.5 Isolate Nodule
51 2932818245 Bradyrhizobium sp. S3.9.1 Isolate Nodule
52 2932828146 Bradyrhizobium sp. S3.9.2 Isolate Nodule
53 2933577622 Bradyrhizobium japonicum SEMIA 417 Isolate Nodule
54 2935608549 Bradyrhizobium sp. RT6a Isolate Nodule
55 2935616580 Bradyrhizobium sp. RT7a Isolate Nodule
56 2935638405 Bradyrhizobium sp. JR19.8 Isolate Nodule
57 2935648319 Bradyrhizobium sp. JR4.3 Isolate Nodule
58 2935656913 Bradyrhizobium sp. JR5.3 Isolate Nodule
59 2935665750 Bradyrhizobium sp. JR7.2 Isolate Nodule
60 2935675223 Bradyrhizobium sp. LA2.1 Isolate Nodule
61 2935684952 Bradyrhizobium sp. LA3.X Isolate Nodule
62 2935694250 Bradyrhizobium sp. LA6.1 Isolate Nodule
63 2935703347 Bradyrhizobium sp. LA6.10 Isolate Nodule
64 2935713505 Bradyrhizobium sp. LA6.12 Isolate Nodule
65 2935722832 Bradyrhizobium sp. LA6.3 Isolate Nodule
66 2935732158 Bradyrhizobium sp. LA6.4 Isolate Nodule
67 2935741537 Bradyrhizobium sp. LA6.7 Isolate Nodule
68 2935750917 Bradyrhizobium sp. LA6.8 Isolate Nodule
69 2935760218 Bradyrhizobium sp. LA7.1 Isolate Nodule
70 2935769743 Bradyrhizobium sp. LB12.1 Isolate Nodule
71 2935777560 Bradyrhizobium sp. LB14.3 Isolate Nodule
72 2935785616 Bradyrhizobium sp. LB5.2 Isolate Nodule
73 2935793552 Bradyrhizobium sp. LB8.2 Isolate Nodule
74 2935801545 Bradyrhizobium sp. RT10b Isolate Nodule
75 2935810662 Bradyrhizobium sp. RT3a Isolate Nodule
76 2935819856 Bradyrhizobium sp. RT3b Isolate Nodule
77 2935827899 Bradyrhizobium sp. RT4a Isolate Nodule
78 2935837841 Bradyrhizobium sp. RT4b Isolate Nodule
79 2935847175 Bradyrhizobium sp. RT5a Isolate Nodule
80 2935855204 Bradyrhizobium sp. RT7b Isolate Nodule
81 2935864058 Bradyrhizobium sp. RT9a Isolate Nodule
82 2935873716 Bradyrhizobium sp. RT9b Isolate Nodule
83 2935883170 Bradyrhizobium sp. S3.12.5 Isolate Nodule
84 2935908558 Bradyrhizobium sp. F1.1.1 Isolate Nodule
85 2935916978 Bradyrhizobium sp. F1.13.3 Isolate Nodule
86 2935926038 Bradyrhizobium sp. F1.2.1 Isolate Nodule
87 2935934488 Bradyrhizobium sp. F1.2.2 Isolate Nodule
88 2935942939 Bradyrhizobium sp. F1.2.6 Isolate Nodule
89 2935951376 Bradyrhizobium sp. F1.2.8 Isolate Nodule
90 2935959822 Bradyrhizobium sp. F1.4.3 Isolate Nodule
91 2935967501 Bradyrhizobium sp. F1.6.2 Isolate Nodule
92 2935975950 Bradyrhizobium sp. GM2.2 Isolate Nodule
93 2935984226 Bradyrhizobium sp. i1.15.2 Isolate Nodule
94 2935992306 Bradyrhizobium sp. I1.7.5 Isolate Nodule
95 2936002035 Bradyrhizobium sp. I1.8.5 Isolate Nodule
96 2936011229 Bradyrhizobium sp. JR1.1 Isolate Nodule
97 2936019824 Bradyrhizobium sp. JR1.5 Isolate Nodule
98 2936028420 Bradyrhizobium sp. JR1.7 Isolate Nodule
99 2936037263 Bradyrhizobium sp. JR18.2 Isolate Nodule
100 2936046547 Bradyrhizobium sp. JR3.12 Isolate Nodule
101 2936055302 Bradyrhizobium sp. JR4.1 Isolate Nodule
102 2940556831 Bradyrhizobium sp. LA8.1 Isolate Nodule
103 2941538514 Bradyrhizobium sp. RT11b Isolate Nodule
104 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
105 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
106 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
107 3300003659 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
108 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
109 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
110 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
111 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
112 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
113 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
114 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
115 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
116 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
117 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
118 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
119 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
120 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
121 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
122 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
123 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
124 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
125 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
126 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
127 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
128 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
129 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
130 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
131 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
132 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
133 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
134 3300006944 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW Metagenome Nodule
135 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
136 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
137 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
138 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
139 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
140 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
141 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
142 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
143 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
144 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
145 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
146 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
147 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
148 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
149 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
150 3300021324 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4 Metagenome Nodule
151 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
152 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
153 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
154 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
155 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
156 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
157 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
158 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
159 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
160 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
161 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
162 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
163 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
164 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
165 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
166 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
167 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
168 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
169 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
170 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
171 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
172 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
173 3300027296 Root nodule microbial communities of legume samples collected from California, USA - Cow pea red BW (SPAdes) (version 2) Metagenome Nodule
174 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
175 3300027363 Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes) (version 2) Metagenome Nodule
176 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
177 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
178 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
179 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
180 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
181 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
182 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
183 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
184 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
185 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
186 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
187 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
188 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
189 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
190 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
191 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
192 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
193 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
194 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
195 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
196 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
197 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
198 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
199 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
200 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
201 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
202 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
203 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
204 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
205 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
206 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
207 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
208 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
209 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
210 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
211 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
212 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
213 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
214 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
215 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
216 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
217 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
218 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
219 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
220 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
221 8006964411 Bradyrhizobium sp. sBnM-33 Isolate Nodule
222 8016511872 Bradyrhizobium sp. S3.14.4 Isolate Nodule
223 8016530956 Bradyrhizobium sp. LM6.11 Isolate Nodule
224 8016539877 Bradyrhizobium sp. LM6.10 Isolate Nodule
225 8016548790 Bradyrhizobium sp. LM3.6 Isolate Nodule
226 8016557553 Bradyrhizobium sp. LM3.4 Isolate Nodule
227 8016566248 Bradyrhizobium sp. LM3.2 Isolate Nodule
228 8016575299 Bradyrhizobium sp. LM2.9 Isolate Nodule
229 8016595262 Bradyrhizobium sp. LM2.3 Isolate Nodule
230 8016603502 Bradyrhizobium sp. LB7.2 Isolate Nodule
231 8016613128 Bradyrhizobium sp. LB7.1 Isolate Nodule
232 8016622563 Bradyrhizobium sp. LB13.1 Isolate Nodule
233 8016630954 Bradyrhizobium sp. F1.13.1 Isolate Nodule
234 8017057580 Bradyrhizobium sp. S3.7.6 Isolate Nodule
235 8019538911 Bradyrhizobium sp. LB9.1b Isolate Nodule
236 8019547302 Bradyrhizobium sp. LB1.3 Isolate Nodule
237 8019576017 Bradyrhizobium sp. i1.7.7 Isolate Nodule
238 8019586578 Bradyrhizobium sp. i1.4.4 Isolate Nodule
239 8019597564 Bradyrhizobium sp. i1.3.6 Isolate Nodule
240 8019608314 Bradyrhizobium sp. i1.3.1 Isolate Nodule
241 8019629233 Bradyrhizobium sp. GM6.1 Isolate Nodule
242 8019638758 Bradyrhizobium sp. GM5.1 Isolate Nodule
243 8019648815 Bradyrhizobium sp. GM24.11 Isolate Nodule
244 8019668869 Bradyrhizobium sp. GM2.4 Isolate Nodule
245 8019678201 Bradyrhizobium sp. GM0.4 Isolate Nodule
246 8019687851 Bradyrhizobium sp. F1.13.4 Isolate Nodule
247 8055742211 Bradyrhizobium japonicum 5038 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 54.12
Metatranscriptomes 0
Isolates 45.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.69
Nodule 41.64
Rhizoplane 2.49
Rhizosphere 37.37
Stem 0
Stem Tuber 0
Unclassified 12.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10007140 3300003215 Bacteria 5540
2 rootH1_10154617 3300003323 Bacteria 3454
3 JGI25160J50197_1008131 3300003354 Bacteria 4025
4 JGI25404J52841_10000336 3300003659 Bacteria 6242
5 JGI25404J52841_10001879 3300003659 Bacteria 3837
6 Ga0070658_10134814 3300005327 Bacteria 2059
7 Ga0070683_100147439 3300005329 Bacteria 2230
8 Ga0070668_100092678 3300005347 Bacteria 2383
9 Ga0070669_100201474 3300005353 Bacteria 1566
10 Ga0070675_100084404 3300005354 Bacteria 2652
11 Ga0070709_10066369 3300005434 Bacteria 2314
12 Ga0070714_100022187 3300005435 Bacteria 5204
13 Ga0070713_100007963 3300005436 Bacteria 7487
14 Ga0070663_100030698 3300005455 Bacteria 3686
15 Ga0070678_100033327 3300005456 Bacteria 3575
16 Ga0070681_10028665 3300005458 Bacteria 5598
17 Ga0070681_10070350 3300005458 Unclassified 3465
18 Ga0070681_10161137 3300005458 Bacteria 2167
19 Ga0070679_100066222 3300005530 Bacteria 3601
20 Ga0070679_100248199 3300005530 Bacteria 1736
21 Ga0070684_100010394 3300005535 Bacteria 7371
22 Ga0068857_100006759 3300005577 Bacteria 9865
23 Ga0068854_100150501 3300005578 Bacteria 1794
24 Ga0068856_100186583 3300005614 Bacteria 2088
25 Ga0068861_100101952 3300005719 Bacteria 2284
26 Ga0081455_10001075 3300005937 Bacteria 34374
27 Ga0081540_1004720 3300005983 Bacteria 10309
28 Ga0081540_1027898 3300005983 Bacteria 3187
29 Ga0081540_1028940 3300005983 Bacteria 3098
30 Ga0075365_10136910 3300006038 Bacteria 1698
31 Ga0075365_10151549 3300006038 Bacteria 1613
32 Ga0070712_100196528 3300006175 Bacteria 1581
33 Ga0075367_10104225 3300006178 Bacteria 1736
34 Ga0075367_10106660 3300006178 Bacteria 1717
35 Ga0075428_100000476 3300006844 Bacteria 40332
36 Ga0075430_100026997 3300006846 Bacteria 4883
37 Ga0075431_100005265 3300006847 Bacteria 12742
38 Ga0075434_100089629 3300006871 Bacteria 3076
39 Ga0099823_1054608 3300006944 Bacteria 2297
40 Ga0075435_100286907 3300007076 Bacteria 1406
41 Ga0105240_10000427 3300009093 Bacteria 78108
42 Ga0105240_10019065 3300009093 Bacteria 9175
43 Ga0111539_10002426 3300009094 Bacteria 24790
44 Ga0111539_10227085 3300009094 Bacteria 2174
45 Ga0105245_10135843 3300009098 Bacteria 2311
46 Ga0105241_10086352 3300009174 Bacteria 2467
47 Ga0105241_10103454 3300009174 Bacteria 2267
48 Ga0105241_10192115 3300009174 Bacteria 1700
49 Ga0105237_10008329 3300009545 Bacteria 11250
50 Ga0105237_10017339 3300009545 Bacteria 7466
51 Ga0105237_10146806 3300009545 Bacteria 2353
52 Ga0105239_10034375 3300010375 Bacteria 5566
53 Ga0105239_10049990 3300010375 Bacteria 4585
54 Ga0105239_10058807 3300010375 Bacteria 4218
55 Ga0105246_10071639 3300011119 Bacteria 2441
56 Ga0157370_10078252 3300013104 Bacteria 3114
57 Ga0157369_10003899 3300013105 Bacteria 17702
58 Ga0157369_10004157 3300013105 Bacteria 17144
59 Ga0157372_10022827 3300013307 Bacteria 6775
60 Ga0157375_10047655 3300013308 Bacteria 4187
61 Ga0157380_10134940 3300014326 Bacteria 2111
62 Ga0214544_1020603 3300021320 Bacteria 4621
63 Ga0214544_1028839 3300021320 Bacteria 2118
64 Ga0214542_1000025 3300021321 Bacteria 183588
65 Ga0214542_1028375 3300021321 Bacteria 2425
66 Ga0214545_1000014 3300021324 Bacteria 183588
67 Ga0214545_1029500 3300021324 Bacteria 2461
68 Ga0214543_1000034 3300021327 Bacteria 183712
69 Ga0214543_1028086 3300021327 Bacteria 2728
70 Ga0213876_10111500 3300021384 Bacteria 1452
71 Ga0213876_10125487 3300021384 Bacteria 1363
72 Ga0209564_1003916 3300025295 Bacteria 9529
73 Ga0209758_1004003 3300025297 Bacteria 12747
74 Ga0209758_1010726 3300025297 Bacteria 5432
75 Ga0207426_1000437 3300025302 Bacteria 67439
76 Ga0207426_1036152 3300025302 Bacteria 1572
77 Ga0207699_10171476 3300025906 Bacteria 1452
78 Ga0207654_10115512 3300025911 Bacteria 1677
79 Ga0207707_10000478 3300025912 Bacteria 41482
80 Ga0207695_10000062 3300025913 Bacteria 351979
81 Ga0207671_10000377 3300025914 Bacteria 63306
82 Ga0207671_10035862 3300025914 Bacteria 3677
83 Ga0207693_10057093 3300025915 Bacteria 3060
84 Ga0207657_10268849 3300025919 Bacteria 1355
85 Ga0207652_10196170 3300025921 Bacteria 1816
86 Ga0207700_10160261 3300025928 Bacteria 1868
87 Ga0207689_10201488 3300025942 Bacteria 1643
88 Ga0207661_10008369 3300025944 Bacteria 7389
89 Ga0207667_10105318 3300025949 Bacteria 2910
90 Ga0207640_10123305 3300025981 Bacteria 1861
91 Ga0207639_10003938 3300026041 Bacteria 10023
92 Ga0207678_10031097 3300026067 Bacteria 4658
93 Ga0207702_10194398 3300026078 Bacteria 1877
94 Ga0207683_10057459 3300026121 Bacteria 3415
95 Ga0209389_1000004 3300027296 Bacteria 263759
96 Ga0209489_100777 3300027361 Bacteria 63061
97 Ga0209700_100013 3300027363 Bacteria 341906
98 Ga0207428_10007752 3300027907 Bacteria 9770
99 Ga0207428_10129346 3300027907 Bacteria 1933
100 Ga0307408_100130586 3300031548 Bacteria 1959
101 Ga0307508_10000701 3300031616 Bacteria 39935
102 Ga0307510_10019799 3300033180 Bacteria 7881
103 Ga0373927_0105499 3300035695 Bacteria 1835
104 Ga0395900_0144919 3300037418 Bacteria 2429
105 Ga0395898_0023024 3300037466 Bacteria 6298
106 Ga0395901_0154551 3300038443 Bacteria 2410
107 Ga0436365_1219181 3300039437 Bacteria 2473
108 Ga0436365_1626565 3300039437 Bacteria 1491
109 Ga0466972_0004328 3300044658 Bacteria 7093
110 Ga0466960_0000424 3300044901 Bacteria 14510
111 Ga0466959_0012158 3300045049 Bacteria 6211
112 Ga0451576_0080495 3300045051 Bacteria 3389
113 Ga0466967_0041506 3300045976 Bacteria 3967
114 Ga0466967_0054863 3300045976 Bacteria 3509
115 Ga0495629_0200239 3300046459 Bacteria 1381
116 Ga0495638_0013594 3300046460 Bacteria 5534
117 Ga0495594_0110391 3300046499 Bacteria 1551
118 Ga0495606_0005210 3300046507 Bacteria 12548
119 Ga0495631_0039190 3300046518 Bacteria 2104
120 Ga0495648_0007614 3300046524 Bacteria 8644
121 Ga0495668_0012595 3300046616 Bacteria 5014
122 Ga0495668_0059355 3300046616 Bacteria 2111
123 Ga0495588_0122506 3300046674 Bacteria 1371
124 Ga0495599_0076637 3300046678 Bacteria 2088
125 Ga0495658_0113161 3300046683 Bacteria 1634
126 Ga0495589_0123531 3300046794 Bacteria 1246
127 Ga0495604_0045279 3300047317 Bacteria 3434
128 Ga0496104_0365048 3300048907 Bacteria 1356
129 Ga0496109_0419110 3300048912 Bacteria 1265
130 Ga0496110_0145691 3300048913 Bacteria 2142
131 Ga0496111_0240753 3300048914 Bacteria 1344
132 Ga0496113_0066912 3300048916 Bacteria 2723
133 Ga0496114_0025961 3300048917 Bacteria 4793
134 Ga0496114_0104523 3300048917 Bacteria 2422
135 Ga0496117_0049282 3300048920 Bacteria 2998
136 Ga0496121_0116719 3300048924 Bacteria 2024
137 Ga0496125_0022471 3300048928 Bacteria 5857
138 Ga0496126_0084646 3300048929 Bacteria 2797
139 Ga0495682_0008319 3300049460 Bacteria 4091
140 nmdc:mga0yw44_142537_c1 3300050492 Bacteria 1558
141 nmdc:mga0yw44_3055_c1 3300050492 Bacteria 7326
142 nmdc:mga0yw44_72226_c1 3300050492 Bacteria 2144
143 nmdc:mga06z11_160300_c1 3300050494 Bacteria 1285
144 nmdc:mga09592_20608_c1 3300050508 Bacteria 5423
145 nmdc:mga06r32_7351_c1 3300050510 Bacteria 9912
146 nmdc:mga08y16_118996_c1 3300050511 Bacteria 2749
147 nmdc:mga08y16_12026_c1 3300050511 Bacteria 9093
148 nmdc:mga08y16_319083_c1 3300050511 Bacteria 1600
149 nmdc:mga0n895_37747_c1 3300050512 Bacteria 4675
150 nmdc:mga0rr50_271674_c1 3300050513 Bacteria 1413
151 Ga0500595_030453 3300053119 Bacteria 1817

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300048912 Ga0496109_0419110 Ga0496109_0419110_286_1218 295
2 iso_pu_bacteria 8016530956 8016537157 311
3 iso_pu_bacteria 8016539877 8016541416 311
4 iso_pu_bacteria 8016548790 8016551836 311
5 iso_pu_bacteria 8016557553 8016560218 311
6 iso_pu_bacteria 8016566248 8016566809 311
7 iso_pu_bacteria 8016575299 8016579542 311
8 iso_pu_bacteria 8016595262 8016598136 311
9 3300045051 Ga0451576_0080495 Ga0451576_0080495_1259_2359 322
10 3300005347 Ga0070668_100092678 Ga0070668_1000926781 328
11 3300005353 Ga0070669_100201474 Ga0070669_1002014741 328
12 3300005354 Ga0070675_100084404 Ga0070675_1000844042 328
13 3300005456 Ga0070678_100033327 Ga0070678_1000333274 328
14 3300005719 Ga0068861_100101952 Ga0068861_1001019522 328
15 3300011119 Ga0105246_10071639 Ga0105246_100716391 328
16 3300014326 Ga0157380_10134940 Ga0157380_101349402 328
17 3300025942 Ga0207689_10201488 Ga0207689_102014881 328
18 3300026121 Ga0207683_10057459 Ga0207683_100574592 328
19 3300009174 Ga0105241_10086352 Ga0105241_100863522 334
20 3300046499 Ga0495594_0110391 Ga0495594_0110391_381_1490 338
21 3300046683 Ga0495658_0113161 Ga0495658_0113161_484_1593 338
22 3300009098 Ga0105245_10135843 Ga0105245_101358432 339
23 3300006178 Ga0075367_10104225 Ga0075367_101042251 347
24 3300050492 nmdc:mga0yw44_3055_c1 nmdc:mga0yw44_3055_c1_3139_4242 347
25 3300010375 Ga0105239_10034375 Ga0105239_100343753 348
26 iso_pu_bacteria 2513237104 2513719325 348
27 iso_pu_bacteria 2528768022 2528855274 348
28 iso_pu_bacteria 2824600985 2824601531 348
29 iso_pu_bacteria 2824609381 2824617197 348
30 iso_pu_bacteria 2824653114 2824653662 348
31 iso_pu_bacteria 2824661429 2824663035 348
32 iso_pu_bacteria 2824746037 2824746243 348
33 iso_pu_bacteria 2847930680 2847938422 348
34 iso_pu_bacteria 2857509624 2857512039 348
35 iso_pu_bacteria 2879083081 2879088658 348
36 iso_pu_bacteria 2879099564 2879103997 348
37 iso_pu_bacteria 2881364244 2881370530 348
38 iso_pu_bacteria 2888419890 2888422087 348
39 iso_pu_bacteria 2906643746 2906647982 348
40 iso_pu_bacteria 2922368715 2922371387 348
41 iso_pu_bacteria 2929615660 2929623240 348
42 iso_pu_bacteria 2929624759 2929630920 348
43 iso_pu_bacteria 2932784394 2932786091 348
44 iso_pu_bacteria 2932809354 2932811966 348
45 iso_pu_bacteria 2932818245 2932822548 348
46 iso_pu_bacteria 2932828146 2932831135 348
47 iso_pu_bacteria 2933577622 2933585144 348
48 iso_pu_bacteria 2935616580 2935624079 348
49 iso_pu_bacteria 2935638405 2935640275 348
50 iso_pu_bacteria 2935665750 2935666887 348
51 iso_pu_bacteria 2935675223 2935684353 348
52 iso_pu_bacteria 2935684952 2935691341 348
53 iso_pu_bacteria 2935694250 2935699900 348
54 iso_pu_bacteria 2935703347 2935704642 348
55 iso_pu_bacteria 2935713505 2935719175 348
56 iso_pu_bacteria 2935722832 2935729225 348
57 iso_pu_bacteria 2935732158 2935737534 348
58 iso_pu_bacteria 2935741537 2935746910 348
59 iso_pu_bacteria 2935750917 2935758291 348
60 iso_pu_bacteria 2935760218 2935762458 348
61 iso_pu_bacteria 2935801545 2935803955 348
62 iso_pu_bacteria 2935810662 2935811874 348
63 iso_pu_bacteria 2935827899 2935829758 348
64 iso_pu_bacteria 2935837841 2935842885 348
65 iso_pu_bacteria 2935855204 2935862421 348
66 iso_pu_bacteria 2935864058 2935870556 348
67 iso_pu_bacteria 2935873716 2935881138 348
68 iso_pu_bacteria 2935992306 2935993635 348
69 iso_pu_bacteria 2936002035 2936004531 348
70 iso_pu_bacteria 2936037263 2936038457 348
71 iso_pu_bacteria 2940556831 2940563799 348
72 iso_pu_bacteria 2941538514 2941544134 348
73 iso_pu_bacteria 8016511872 8016516242 348
74 iso_pu_bacteria 8017057580 8017060290 348
75 iso_pu_bacteria 8019576017 8019579817 348
76 iso_pu_bacteria 8019586578 8019587523 348
77 iso_pu_bacteria 8019597564 8019603815 348
78 iso_pu_bacteria 8019608314 8019614722 348
79 iso_pu_bacteria 8055742211 8055748976 348
80 3300025302 Ga0207426_1036152 Ga0207426_10361522 349
81 iso_pu_bacteria 2508501042 2508697114 349
82 iso_pu_bacteria 2513237094 2513637636 349
83 iso_pu_bacteria 2513237095 2513649512 349
84 iso_pu_bacteria 2515154112 2515630718 349
85 iso_pu_bacteria 2517093001 2517100426 349
86 iso_pu_bacteria 2721755755 2723847155 349
87 iso_pu_bacteria 2791355199 2793082942 349
88 iso_pu_bacteria 2816332527 2818237982 349
89 iso_pu_bacteria 2824704595 2824709868 349
90 iso_pu_bacteria 2824753945 2824756999 349
91 iso_pu_bacteria 2824763712 2824770127 349
92 iso_pu_bacteria 2841957949 2841960374 349
93 iso_pu_bacteria 2844315083 2844317087 349
94 iso_pu_bacteria 2874590934 2874597568 349
95 iso_pu_bacteria 2874645413 2874649131 349
96 iso_pu_bacteria 2876761206 2876768049 349
97 iso_pu_bacteria 2876771140 2876774959 349
98 iso_pu_bacteria 2876818435 2876822289 349
99 iso_pu_bacteria 2879074833 2879078047 349
100 iso_pu_bacteria 2879127579 2879132402 349
101 iso_pu_bacteria 2879142872 2879145299 349
102 iso_pu_bacteria 2885409591 2885416490 349
103 iso_pu_bacteria 2888378607 2888381701 349
104 iso_pu_bacteria 2888388044 2888388936 349
105 iso_pu_bacteria 2889033259 2889036189 349
106 iso_pu_bacteria 2903727486 2903735054 349
107 iso_pu_bacteria 2904711408 2904719037 349
108 iso_pu_bacteria 2906602504 2906604170 349
109 iso_pu_bacteria 2908775508 2908781980 349
110 iso_pu_bacteria 2932794094 2932799139 349
111 iso_pu_bacteria 2932801729 2932803938 349
112 iso_pu_bacteria 2935608549 2935612925 349
113 iso_pu_bacteria 2935648319 2935654711 349
114 iso_pu_bacteria 2935656913 2935663512 349
115 iso_pu_bacteria 2935769743 2935777290 349
116 iso_pu_bacteria 2935777560 2935780391 349
117 iso_pu_bacteria 2935785616 2935793206 349
118 iso_pu_bacteria 2935793552 2935801198 349
119 iso_pu_bacteria 2935819856 2935824413 349
120 iso_pu_bacteria 2935847175 2935852442 349
121 iso_pu_bacteria 2935883170 2935884256 349
122 iso_pu_bacteria 2935908558 2935912411 349
123 iso_pu_bacteria 2935916978 2935921756 349
124 iso_pu_bacteria 2935926038 2935929700 349
125 iso_pu_bacteria 2935934488 2935938932 349
126 iso_pu_bacteria 2935942939 2935948233 349
127 iso_pu_bacteria 2935951376 2935954957 349
128 iso_pu_bacteria 2935959822 2935962225 349
129 iso_pu_bacteria 2935967501 2935972009 349
130 iso_pu_bacteria 2935975950 2935979343 349
131 iso_pu_bacteria 2935984226 2935988078 349
132 iso_pu_bacteria 2936011229 2936017668 349
133 iso_pu_bacteria 2936019824 2936026250 349
134 iso_pu_bacteria 2936028420 2936035240 349
135 iso_pu_bacteria 2936046547 2936053148 349
136 iso_pu_bacteria 2936055302 2936059371 349
137 iso_pu_bacteria 8006964411 8006968988 349
138 iso_pu_bacteria 8016603502 8016604276 349
139 iso_pu_bacteria 8016613128 8016620861 349
140 iso_pu_bacteria 8016622563 8016629127 349
141 iso_pu_bacteria 8016630954 8016633664 349
142 iso_pu_bacteria 8019538911 8019542680 349
143 iso_pu_bacteria 8019547302 8019548059 349
144 iso_pu_bacteria 8019629233 8019636849 349
145 iso_pu_bacteria 8019638758 8019642757 349
146 iso_pu_bacteria 8019648815 8019649835 349
147 iso_pu_bacteria 8019668869 8019674261 349
148 iso_pu_bacteria 8019678201 8019681860 349
149 iso_pu_bacteria 8019687851 8019693927 349
150 3300005434 Ga0070709_10066369 Ga0070709_100663692 350
151 3300025906 Ga0207699_10171476 Ga0207699_101714762 350
152 3300048924 Ga0496121_0116719 Ga0496121_0116719_658_1755 350
153 3300005435 Ga0070714_100022187 Ga0070714_1000221874 351
154 3300005436 Ga0070713_100007963 Ga0070713_1000079634 351
155 3300005578 Ga0068854_100150501 Ga0068854_1001505011 351
156 3300006178 Ga0075367_10106660 Ga0075367_101066602 351
157 3300009093 Ga0105240_10019065 Ga0105240_100190656 351
158 3300009094 Ga0111539_10227085 Ga0111539_102270853 351
159 3300009545 Ga0105237_10146806 Ga0105237_101468062 351
160 3300013104 Ga0157370_10078252 Ga0157370_100782522 351
161 3300013105 Ga0157369_10003899 Ga0157369_1000389914 351
162 3300013105 Ga0157369_10004157 Ga0157369_100041572 351
163 3300013307 Ga0157372_10022827 Ga0157372_100228274 351
164 3300021320 Ga0214544_1020603 Ga0214544_10206032 351
165 3300021321 Ga0214542_1000025 Ga0214542_1000025164 351
166 3300021324 Ga0214545_1000014 Ga0214545_100001414 351
167 3300021327 Ga0214543_1000034 Ga0214543_1000034162 351
168 3300021384 Ga0213876_10111500 Ga0213876_101115002 351
169 3300021384 Ga0213876_10125487 Ga0213876_101254872 351
170 3300025928 Ga0207700_10160261 Ga0207700_101602612 351
171 3300025981 Ga0207640_10123305 Ga0207640_101233051 351
172 3300027363 Ga0209700_100013 Ga0209700_100013234 351
173 3300027907 Ga0207428_10129346 Ga0207428_101293462 351
174 3300037418 Ga0395900_0144919 Ga0395900_0144919_677_1777 351
175 3300037466 Ga0395898_0023024 Ga0395898_0023024_5008_6108 351
176 3300038443 Ga0395901_0154551 Ga0395901_0154551_787_1887 351
177 3300039437 Ga0436365_1219181 Ga0436365_1219181_1001_2122 351
178 3300039437 Ga0436365_1626565 Ga0436365_1626565_101_1198 351
179 3300050494 nmdc:mga06z11_160300_c1 nmdc:mga06z11_160300_c1_35_1171 351
180 3300050511 nmdc:mga08y16_118996_c1 nmdc:mga08y16_118996_c1_365_1471 351
181 3300050511 nmdc:mga08y16_319083_c1 nmdc:mga08y16_319083_c1_404_1501 351
182 3300005455 Ga0070663_100030698 Ga0070663_1000306982 352
183 3300005983 Ga0081540_1004720 Ga0081540_10047201 352
184 3300006944 Ga0099823_1054608 Ga0099823_10546082 352
185 3300013308 Ga0157375_10047655 Ga0157375_100476552 352
186 3300025297 Ga0209758_1010726 Ga0209758_10107265 352
187 3300026067 Ga0207678_10031097 Ga0207678_100310973 352
188 3300027296 Ga0209389_1000004 Ga0209389_1000004147 352
189 3300027361 Ga0209489_100777 Ga0209489_1007777 352
190 3300033180 Ga0307510_10019799 Ga0307510_100197995 352
191 3300044658 Ga0466972_0004328 Ga0466972_0004328_1200_2300 352
192 3300044901 Ga0466960_0000424 Ga0466960_0000424_8426_9526 352
193 3300046507 Ga0495606_0005210 Ga0495606_0005210_6009_7112 352
194 3300046518 Ga0495631_0039190 Ga0495631_0039190_179_1279 352
195 3300046524 Ga0495648_0007614 Ga0495648_0007614_4427_5530 352
196 3300046616 Ga0495668_0059355 Ga0495668_0059355_490_1593 352
197 3300046678 Ga0495599_0076637 Ga0495599_0076637_106_1209 352
198 3300046794 Ga0495589_0123531 Ga0495589_0123531_119_1219 352
199 3300048914 Ga0496111_0240753 Ga0496111_0240753_78_1178 352
200 3300048917 Ga0496114_0025961 Ga0496114_0025961_46_1146 352
201 3300048917 Ga0496114_0104523 Ga0496114_0104523_1101_2165 352
202 3300048920 Ga0496117_0049282 Ga0496117_0049282_212_1312 352
203 3300049460 Ga0495682_0008319 Ga0495682_0008319_2946_4049 352
204 3300053119 Ga0500595_030453 Ga0500595_030453_580_1677 352
205 3300003215 JGI25153J46596_10007140 JGI25153J46596_100071404 353
206 3300003323 rootH1_10154617 rootH1_101546173 353
207 3300003354 JGI25160J50197_1008131 JGI25160J50197_10081313 353
208 3300003659 JGI25404J52841_10000336 JGI25404J52841_100003364 353
209 3300003659 JGI25404J52841_10001879 JGI25404J52841_100018791 353
210 3300005327 Ga0070658_10134814 Ga0070658_101348141 353
211 3300005329 Ga0070683_100147439 Ga0070683_1001474392 353
212 3300005458 Ga0070681_10028665 Ga0070681_100286656 353
213 3300005458 Ga0070681_10070350 Ga0070681_100703503 353
214 3300005458 Ga0070681_10161137 Ga0070681_101611372 353
215 3300005530 Ga0070679_100066222 Ga0070679_1000662221 353
216 3300005530 Ga0070679_100248199 Ga0070679_1002481992 353
217 3300005535 Ga0070684_100010394 Ga0070684_1000103945 353
218 3300005577 Ga0068857_100006759 Ga0068857_1000067595 353
219 3300005614 Ga0068856_100186583 Ga0068856_1001865832 353
220 3300005937 Ga0081455_10001075 Ga0081455_1000107526 353
221 3300005983 Ga0081540_1027898 Ga0081540_10278981 353
222 3300005983 Ga0081540_1028940 Ga0081540_10289402 353
223 3300006038 Ga0075365_10136910 Ga0075365_101369102 353
224 3300006038 Ga0075365_10151549 Ga0075365_101515492 353
225 3300006175 Ga0070712_100196528 Ga0070712_1001965281 353
226 3300006844 Ga0075428_100000476 Ga0075428_1000004767 353
227 3300006846 Ga0075430_100026997 Ga0075430_1000269972 353
228 3300006847 Ga0075431_100005265 Ga0075431_10000526514 353
229 3300006871 Ga0075434_100089629 Ga0075434_1000896292 353
230 3300007076 Ga0075435_100286907 Ga0075435_1002869071 353
231 3300009093 Ga0105240_10000427 Ga0105240_1000042767 353
232 3300009094 Ga0111539_10002426 Ga0111539_1000242622 353
233 3300009174 Ga0105241_10103454 Ga0105241_101034542 353
234 3300009174 Ga0105241_10192115 Ga0105241_101921152 353
235 3300009545 Ga0105237_10008329 Ga0105237_100083297 353
236 3300009545 Ga0105237_10017339 Ga0105237_100173392 353
237 3300010375 Ga0105239_10049990 Ga0105239_100499903 353
238 3300010375 Ga0105239_10058807 Ga0105239_100588075 353
239 3300021320 Ga0214544_1028839 Ga0214544_10288392 353
240 3300021321 Ga0214542_1028375 Ga0214542_10283752 353
241 3300021324 Ga0214545_1029500 Ga0214545_10295002 353
242 3300021327 Ga0214543_1028086 Ga0214543_10280862 353
243 3300025295 Ga0209564_1003916 Ga0209564_10039167 353
244 3300025297 Ga0209758_1004003 Ga0209758_10040031 353
245 3300025302 Ga0207426_1000437 Ga0207426_100043765 353
246 3300025911 Ga0207654_10115512 Ga0207654_101155122 353
247 3300025912 Ga0207707_10000478 Ga0207707_100004784 353
248 3300025913 Ga0207695_10000062 Ga0207695_1000006293 353
249 3300025914 Ga0207671_10000377 Ga0207671_100003772 353
250 3300025914 Ga0207671_10035862 Ga0207671_100358623 353
251 3300025915 Ga0207693_10057093 Ga0207693_100570932 353
252 3300025919 Ga0207657_10268849 Ga0207657_102688491 353
253 3300025921 Ga0207652_10196170 Ga0207652_101961702 353
254 3300025944 Ga0207661_10008369 Ga0207661_100083693 353
255 3300025949 Ga0207667_10105318 Ga0207667_101053182 353
256 3300026041 Ga0207639_10003938 Ga0207639_100039381 353
257 3300026078 Ga0207702_10194398 Ga0207702_101943982 353
258 3300027907 Ga0207428_10007752 Ga0207428_100077527 353
259 3300031548 Ga0307408_100130586 Ga0307408_1001305862 353
260 3300031616 Ga0307508_10000701 Ga0307508_1000070122 353
261 3300035695 Ga0373927_0105499 Ga0373927_0105499_527_1633 353
262 3300045049 Ga0466959_0012158 Ga0466959_0012158_1325_2419 353
263 3300045976 Ga0466967_0041506 Ga0466967_0041506_2039_3145 353
264 3300045976 Ga0466967_0054863 Ga0466967_0054863_965_2113 353
265 3300046459 Ga0495629_0200239 Ga0495629_0200239_249_1352 353
266 3300046460 Ga0495638_0013594 Ga0495638_0013594_1368_2510 353
267 3300046616 Ga0495668_0012595 Ga0495668_0012595_3644_4786 353
268 3300046674 Ga0495588_0122506 Ga0495588_0122506_269_1357 353
269 3300047317 Ga0495604_0045279 Ga0495604_0045279_852_1955 353
270 3300048907 Ga0496104_0365048 Ga0496104_0365048_218_1315 353
271 3300048913 Ga0496110_0145691 Ga0496110_0145691_152_1249 353
272 3300048916 Ga0496113_0066912 Ga0496113_0066912_861_2021 353
273 3300048928 Ga0496125_0022471 Ga0496125_0022471_4371_5462 353
274 3300048929 Ga0496126_0084646 Ga0496126_0084646_1111_2214 353
275 3300050492 nmdc:mga0yw44_142537_c1 nmdc:mga0yw44_142537_c1_206_1339 353
276 3300050492 nmdc:mga0yw44_72226_c1 nmdc:mga0yw44_72226_c1_515_1621 353
277 3300050508 nmdc:mga09592_20608_c1 nmdc:mga09592_20608_c1_1649_2764 353
278 3300050510 nmdc:mga06r32_7351_c1 nmdc:mga06r32_7351_c1_5790_6905 353
279 3300050511 nmdc:mga08y16_12026_c1 nmdc:mga08y16_12026_c1_4243_5349 353
280 3300050512 nmdc:mga0n895_37747_c1 nmdc:mga0n895_37747_c1_2036_3145 353
281 3300050513 nmdc:mga0rr50_271674_c1 nmdc:mga0rr50_271674_c1_267_1376 353

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01494

FAD_binding_3

FAD binding domain

1

48

0.91

PF01266

DAO

FAD dependent oxidoreductase

2

337

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
4e21-assembly1.cif.gz_A-2 the crystal structure of 6-phosphogluconate dehydrogenase from geobacter metallireducens 0.9582 1 32
2vq3-assembly1.cif.gz_B crystal structure of the membrane proximal oxidoreductase domain of human steap3, the dominant ferric reductase of the erythroid transferrin cycle 0.9571 1 31
4e21-assembly1.cif.gz_B-2 the crystal structure of 6-phosphogluconate dehydrogenase from geobacter metallireducens 0.9542 1 32
6dv2-assembly1.cif.gz_H crystal structure of human mitochondrial trifunctional protein 0.9518 2 32
3g0o-assembly1.cif.gz_A crystal structure of 3-hydroxyisobutyrate dehydrogenase (ygbj) from salmonella typhimurium 0.9486 1 30
ID Description Score Start End Superfamily
af_P9WFZ3_1_135_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 1.008 1 32 3.40.50.720
af_P9WN19_146_269_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.995 3 31 3.50.50.60
1djnA02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9829 2 30 3.40.50.720
3k30B02 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9745 2 29 3.40.50.720
af_Q7XVF8_63_309_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9707 2 31 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A160TQD8-F1-model_v4 D-amino acid dehydrogenase small subunit (EC 1.4.99.6) 0.9471 1 353 GO:0005737
GO:0016491
AF-A0A160TQD8-F1-model_v4 D-amino acid dehydrogenase small subunit (EC 1.4.99.6) 0.9445 1 353 GO:0005737
GO:0016491
AF-A0A2D9JNG9-F1-model_v4 D-amino-acid oxidase 0.9433 1 353 GO:0005737
AF-W4MBJ6-F1-model_v4 FAD dependent oxidoreductase domain-containing protein 0.9432 2 353 GO:0005737
AF-A0A2D9JNG9-F1-model_v4 D-amino-acid oxidase 0.9407 1 353 GO:0005737

Feature Viewer

pLDDT pTM Quality
89.99 0.9 High
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Predicted Structure (AlphaFold2)

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