F380753

General Info

Members Datasets Scaffolds Average Seq Length
275 184 268 449

Family's Representative Sequence

Representative Sequence 3300053092|Ga0500583_0035054|Ga0500583_0035054_106_1608
Length 500
Sequence MVCWSRSYRESYRGFDGWKLPHGGQPSNHKLKGLIYTLISTETKRNAAMIRYRLTVITIVFSVLMIRCSNSQKSVNSEAKFSPDDEQLFTEVQQQTFQYFWEGAEPTSGMARERIHVDNVYPENDQNVVTSGGSGFGVMALLVGIHRGFITRDEGRERFEKIVQFLKTADRFHGAWPHWWNGETGKVKPFSRKDNGGDLVETSFLIQGLLCARQFFIKGDSTEKVLAARIDTLWREVEFDWYRHGENVLYWHWSPQYSWEMNFPVHGYNECLIMYVLAAASPTHGVPAEVYHQGWAESGGIVSPCPVFDYSLQLHHQGDSPYGGPLFWAHYSYLGLDPHGLKDRYADYWTENKNQTLINYAWCVKNPKYFKGYGPDNWGLTASYSVTGYAGHAPGKNSDLGVITPTAALSSFPYTPQLSMQAMRHWYNDMKDKLWGPYGFYDAFSQTAHWFPQRYLAIDQGPIVVMMENYRSGLLWKLFMSCPEIKTGLKKLGFASPHFK

Samples

Sample ID Description Type Environment
1 2738541278 Niastella sp. CF465 Isolate Unclassified
2 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
3 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
4 2833640130 Mariniflexile sp. TRM1-10 Isolate Rhizosphere
5 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
6 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
7 2914759650 Rhizosphaericola mali Isolate Rhizosphere
8 3300002459 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6 Metagenome Rhizosphere
9 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
10 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
11 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
12 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
13 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
14 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
15 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
16 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
17 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
18 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
19 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
20 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
21 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
22 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
23 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
24 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
25 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
26 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
27 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
28 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
29 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
30 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
31 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
32 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
33 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
34 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
35 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
36 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
37 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
38 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
39 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
40 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
41 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
42 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
43 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
44 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
45 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
46 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
47 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
48 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
49 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
50 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
51 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
52 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
53 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
54 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
55 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
56 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
57 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
58 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
59 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
60 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
61 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
62 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
63 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
64 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
65 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
66 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
67 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
68 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
69 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
70 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
71 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
72 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
73 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
74 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
75 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
76 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
77 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
78 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
79 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
80 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
81 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
82 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
83 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
84 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
85 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
86 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
118 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
119 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
120 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
121 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
122 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
123 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
124 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
125 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
126 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
127 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
128 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
129 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
130 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
131 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
132 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
133 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
134 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
135 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
136 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
137 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
138 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
139 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
140 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
141 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
142 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
143 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
144 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
145 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
146 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
147 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
148 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
149 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
150 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
151 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
152 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
153 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
154 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
155 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
156 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
157 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
158 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
159 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
160 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
161 3300049523 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control Metagenome Rhizosphere
162 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
163 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
164 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
165 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
166 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
167 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
168 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
169 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
170 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
171 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
172 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
173 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
174 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
175 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
176 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
177 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
178 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
179 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
180 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
181 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
182 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
183 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
184 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.09
Metatranscriptomes 0.36
Isolates 2.55

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 5.82
Nodule 0
Rhizoplane 0.36
Rhizosphere 85.09
Stem 0
Stem Tuber 0
Unclassified 8.73

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24751J29686_10000545 3300002459 Bacteria 10495
2 rootH1_10034188 3300003316 Bacteria 2905
3 rootH1_10071281 3300003316 Bacteria 3825
4 rootH1_10098102 3300003316 Bacteria 3005
5 rootH1_10147115 3300003316 Bacteria 3082
6 rootH2_10000086 3300003320 Bacteria 48758
7 rootH2_10011701 3300003320 Bacteria 9654
8 rootH2_10089935 3300003320 Bacteria 4757
9 rootH2_10172800 3300003320 Bacteria 4810
10 rootL2_10001382 3300003322 Bacteria 1797
11 rootL2_10078423 3300003322 Bacteria 2614
12 rootL2_10088568 3300003322 Bacteria 2210
13 rootL2_10153596 3300003322 Bacteria 6183
14 rootH1_10008093 3300003323 Bacteria 17886
15 Ga0055531_10000101 3300003794 Bacteria 93150
16 Ga0055531_10000884 3300003794 Bacteria 24471
17 Ga0065165_1011817 3300005262 Bacteria 3599
18 Ga0065714_10087835 3300005288 Bacteria 2042
19 Ga0065712_10001172 3300005290 Bacteria 6570
20 Ga0065712_10003744 3300005290 Bacteria 4778
21 Ga0070658_10116580 3300005327 Bacteria 2216
22 Ga0070683_100040203 3300005329 Bacteria 4299
23 Ga0070690_100003084 3300005330 Bacteria 9062
24 Ga0070670_100009280 3300005331 Bacteria 8402
25 Ga0068869_100004654 3300005334 Bacteria 8559
26 Ga0068869_100022690 3300005334 Bacteria 4328
27 Ga0068869_100034270 3300005334 Bacteria 3590
28 Ga0070666_10162173 3300005335 Unclassified 1563
29 Ga0070680_100053779 3300005336 Bacteria 3286
30 Ga0068868_100021099 3300005338 Bacteria 4904
31 Ga0068868_100058275 3300005338 Bacteria 3052
32 Ga0070660_100056392 3300005339 Bacteria 3039
33 Ga0070660_100075703 3300005339 Bacteria 2635
34 Ga0070689_100015429 3300005340 Bacteria 5570
35 Ga0070691_10016225 3300005341 Bacteria 3422
36 Ga0070669_100010191 3300005353 Bacteria 6679
37 Ga0070675_100078643 3300005354 Bacteria 2747
38 Ga0070671_100082523 3300005355 Bacteria 2688
39 Ga0070673_100004658 3300005364 Bacteria 8707
40 Ga0070673_100031058 3300005364 Bacteria 4005
41 Ga0070673_100096135 3300005364 Bacteria 2430
42 Ga0070688_100014512 3300005365 Bacteria 4465
43 Ga0070688_100042790 3300005365 Bacteria 2788
44 Ga0070659_100060671 3300005366 Bacteria 2987
45 Ga0070667_100277601 3300005367 Bacteria 1504
46 Ga0070663_100012029 3300005455 Bacteria 5460
47 Ga0070678_100024339 3300005456 Unclassified 4053
48 Ga0070662_100171176 3300005457 Unclassified 1705
49 Ga0068867_100177210 3300005459 Unclassified 1692
50 Ga0070685_10004205 3300005466 Bacteria 7263
51 Ga0070698_100009143 3300005471 Bacteria 10635
52 Ga0070679_100127703 3300005530 Bacteria 2524
53 Ga0070672_100049547 3300005543 Bacteria 3268
54 Ga0070686_100066572 3300005544 Bacteria 2344
55 Ga0068855_100002058 3300005563 Bacteria 24915
56 Ga0068855_100005751 3300005563 Bacteria 15143
57 Ga0068855_100132108 3300005563 Bacteria 2850
58 Ga0068855_100144112 3300005563 Bacteria 2713
59 Ga0068857_100154133 3300005577 Bacteria 2083
60 Ga0068857_100182796 3300005577 Bacteria 1908
61 Ga0068856_100143992 3300005614 Bacteria 2391
62 Ga0068852_100218101 3300005616 Bacteria 1813
63 Ga0068859_100125882 3300005617 Bacteria 2631
64 Ga0068861_100002756 3300005719 Bacteria 11524
65 Ga0068851_10057961 3300005834 Unclassified 1978
66 Ga0068870_10016681 3300005840 Bacteria 3515
67 Ga0068858_100013636 3300005842 Bacteria 7671
68 Ga0068858_100019045 3300005842 Bacteria 6421
69 Ga0068858_100024689 3300005842 Bacteria 5598
70 Ga0068862_100041703 3300005844 Bacteria 3906
71 Ga0081539_10000042 3300005985 Bacteria 289955
72 Ga0081539_10010948 3300005985 Bacteria 7274
73 Ga0075366_10054599 3300006195 Bacteria 2373
74 Ga0097621_100006579 3300006237 Bacteria 8254
75 Ga0075428_100052508 3300006844 Bacteria 4467
76 Ga0097620_100125873 3300006931 Bacteria 2631
77 Ga0097620_100146331 3300006931 Bacteria 2438
78 Ga0105240_10044515 3300009093 Bacteria 5639
79 Ga0111539_10030807 3300009094 Bacteria 6521
80 Ga0111539_10307678 3300009094 Bacteria 1844
81 Ga0114129_10001395 3300009147 Bacteria 32543
82 Ga0105241_10037311 3300009174 Bacteria 3660
83 Ga0105241_10041001 3300009174 Bacteria 3497
84 Ga0105242_10048661 3300009176 Bacteria 3446
85 Ga0105242_10133271 3300009176 Bacteria 2147
86 Ga0105249_10000984 3300009553 Bacteria 25247
87 Ga0105249_10016397 3300009553 Bacteria 6573
88 Ga0105239_10000456 3300010375 Bacteria 59689
89 Ga0157373_10001085 3300013100 Bacteria 20966
90 Ga0157373_10013139 3300013100 Bacteria 6078
91 Ga0157373_10044522 3300013100 Bacteria 3168
92 Ga0157373_10096713 3300013100 Bacteria 2079
93 Ga0157371_10002265 3300013102 Bacteria 18548
94 Ga0157371_10006734 3300013102 Bacteria 9393
95 Ga0157371_10013154 3300013102 Bacteria 6300
96 Ga0157370_10004435 3300013104 Bacteria 16085
97 Ga0157370_10132101 3300013104 Bacteria 2328
98 Ga0157369_10060904 3300013105 Bacteria 4070
99 Ga0157369_10150901 3300013105 Bacteria 2456
100 Ga0157369_10222722 3300013105 Bacteria 1974
101 Ga0157374_10064672 3300013296 Bacteria 3433
102 Ga0157378_10076941 3300013297 Bacteria 3008
103 Ga0157378_10098147 3300013297 Bacteria 2671
104 Ga0157378_10105247 3300013297 Bacteria 2580
105 Ga0163162_10001345 3300013306 Bacteria 22882
106 Ga0163162_10111724 3300013306 Bacteria 2831
107 Ga0163162_10121783 3300013306 Bacteria 2713
108 Ga0163162_10147163 3300013306 Unclassified 2472
109 Ga0163162_10161782 3300013306 Bacteria 2360
110 Ga0157372_10026231 3300013307 Bacteria 6340
111 Ga0157372_10062289 3300013307 Bacteria 4179
112 Ga0157372_10064277 3300013307 Bacteria 4117
113 Ga0157372_10130641 3300013307 Bacteria 2890
114 Ga0157372_10137841 3300013307 Bacteria 2811
115 Ga0157375_10009721 3300013308 Bacteria 8454
116 Ga0157375_10058343 3300013308 Bacteria 3818
117 Ga0163163_10035036 3300014325 Bacteria 4866
118 Ga0157380_10141330 3300014326 Unclassified 2069
119 Ga0157377_10010504 3300014745 Bacteria 4582
120 Ga0157377_10018484 3300014745 Bacteria 3623
121 Ga0157379_10047878 3300014968 Unclassified 3815
122 Ga0157379_10082541 3300014968 Unclassified 2880
123 Ga0157376_10047117 3300014969 Bacteria 3558
124 Ga0182006_1002561 3300015261 Bacteria 9851
125 Ga0182005_1000489 3300015265 Bacteria 20436
126 Ga0163161_10006314 3300017792 Bacteria 8204
127 Ga0209436_102141 3300025208 Bacteria 6187
128 Ga0209646_1001916 3300025246 Bacteria 5055
129 Ga0209257_1000005 3300025304 Bacteria 1592528
130 Ga0209257_1000025 3300025304 Bacteria 724838
131 Ga0207647_10001709 3300025904 Bacteria 16864
132 Ga0207645_10007616 3300025907 Bacteria 7630
133 Ga0207643_10001378 3300025908 Bacteria 13994
134 Ga0207705_10012631 3300025909 Bacteria 6094
135 Ga0207654_10061910 3300025911 Bacteria 2191
136 Ga0207707_10063262 3300025912 Bacteria 3220
137 Ga0207695_10000483 3300025913 Bacteria 85395
138 Ga0207660_10022602 3300025917 Bacteria 4238
139 Ga0207657_10019494 3300025919 Bacteria 6440
140 Ga0207657_10023078 3300025919 Bacteria 5802
141 Ga0207652_10001770 3300025921 Bacteria 18826
142 Ga0207650_10036911 3300025925 Bacteria 3557
143 Ga0207659_10008524 3300025926 Bacteria 6372
144 Ga0207706_10007864 3300025933 Bacteria 9841
145 Ga0207704_10030892 3300025938 Bacteria 3010
146 Ga0207691_10013076 3300025940 Bacteria 7946
147 Ga0207689_10013102 3300025942 Bacteria 7079
148 Ga0207689_10039201 3300025942 Bacteria 3922
149 Ga0207689_10159260 3300025942 Bacteria 1860
150 Ga0207661_10005362 3300025944 Bacteria 9034
151 Ga0207667_10001577 3300025949 Bacteria 28672
152 Ga0207667_10005628 3300025949 Bacteria 15286
153 Ga0207667_10036312 3300025949 Bacteria 5282
154 Ga0207667_10176451 3300025949 Bacteria 2195
155 Ga0207651_10155022 3300025960 Bacteria 1788
156 Ga0207712_10005522 3300025961 Bacteria 7976
157 Ga0207640_10040128 3300025981 Bacteria 2967
158 Ga0207640_10069445 3300025981 Bacteria 2366
159 Ga0207639_10041717 3300026041 Bacteria 3435
160 Ga0207678_10088749 3300026067 Bacteria 2642
161 Ga0207702_10023103 3300026078 Bacteria 5157
162 Ga0207641_10000850 3300026088 Bacteria 32370
163 Ga0207641_10066399 3300026088 Bacteria 3088
164 Ga0207648_10041981 3300026089 Bacteria 4016
165 Ga0207648_10048780 3300026089 Bacteria 3706
166 Ga0207648_10072396 3300026089 Unclassified 3004
167 Ga0207674_10119169 3300026116 Bacteria 2608
168 Ga0207674_10205867 3300026116 Bacteria 1917
169 Ga0207675_100005762 3300026118 Bacteria 11850
170 Ga0207675_100119277 3300026118 Bacteria 2495
171 Ga0207683_10001848 3300026121 Bacteria 18723
172 Ga0207683_10050305 3300026121 Bacteria 3650
173 Ga0207698_10012882 3300026142 Bacteria 5493
174 Ga0207698_10057332 3300026142 Bacteria 3013
175 Ga0207698_10115743 3300026142 Bacteria 2258
176 Ga0207698_10191873 3300026142 Bacteria 1821
177 Ga0268264_10057672 3300028381 Unclassified 3249
178 Ga0307515_10000007 3300028794 Bacteria 719669
179 Ga0316176_1033093 3300030732 Bacteria 13242
180 Ga0316183_1153674 3300030742 Bacteria 79729
181 Ga0316181_1042054 3300030744 Bacteria 14337
182 Ga0265327_10001423 3300031251 Bacteria 30459
183 Ga0265316_10037735 3300031344 Bacteria 3897
184 Ga0307513_10119913 3300031456 Bacteria 2601
185 Ga0307408_100010100 3300031548 Bacteria 6223
186 Ga0265313_10011322 3300031595 Bacteria 5554
187 Ga0307406_10021668 3300031901 Unclassified 3805
188 Ga0307406_10105872 3300031901 Bacteria 1926
189 Ga0307407_10000027 3300031903 Bacteria 107307
190 Ga0307412_10017256 3300031911 Unclassified 4319
191 Ga0307416_100000988 3300032002 Bacteria 15038
192 Ga0307416_100058428 3300032002 Unclassified 3127
193 Ga0307415_100006538 3300032126 Bacteria 6299
194 Ga0316593_10000396 3300032168 Bacteria 7805
195 Ga0373934_0009459 3300035086 Unclassified 3652
196 Ga0316574_0099047 3300035398 Bacteria 1865
197 Ga0373925_0088126 3300037068 Bacteria 2370
198 Ga0395899_0011180 3300037312 Bacteria 6877
199 Ga0395899_0030440 3300037312 Bacteria 4060
200 Ga0395900_0048317 3300037418 Bacteria 4383
201 Ga0395898_0029503 3300037466 Bacteria 5494
202 Ga0395898_0067459 3300037466 Bacteria 3463
203 Ga0395905_0168081 3300037471 Bacteria 2060
204 Ga0395901_0210256 3300038443 Bacteria 2036
205 Ga0436365_0837122 3300039437 Bacteria 12571
206 Ga0439436_0000178 3300041404 Bacteria 15100
207 Ga0451839_0786301 3300041496 Bacteria 2106
208 Ga0439431_0016467 3300041997 Bacteria 1730
209 Ga0439449_0000222 3300042007 Bacteria 20355
210 Ga0439457_000055 3300042014 Bacteria 23747
211 Ga0439462_0000567 3300042015 Bacteria 7340
212 Ga0451577_0002970 3300042876 Bacteria 19391
213 Ga0451577_0028337 3300042876 Bacteria 5065
214 Ga0466969_0001926 3300044656 Bacteria 11083
215 Ga0466972_0000009 3300044658 Bacteria 256374
216 Ga0453683_0001057 3300044673 Bacteria 25583
217 Ga0466964_0031614 3300044706 Bacteria 2100
218 Ga0466964_0049640 3300044706 Bacteria 1718
219 Ga0453684_0000721 3300044712 Bacteria 116843
220 Ga0453684_0005708 3300044712 Bacteria 24370
221 Ga0453684_0008756 3300044712 Bacteria 17971
222 Ga0453684_0008764 3300044712 Bacteria 17960
223 Ga0453684_0053580 3300044712 Bacteria 5265
224 Ga0453684_0071514 3300044712 Bacteria 4385
225 Ga0453684_0089557 3300044712 Bacteria 3805
226 Ga0453684_0091983 3300044712 Bacteria 3742
227 Ga0466957_0000046 3300044842 Bacteria 45804
228 Ga0466957_0001558 3300044842 Bacteria 12068
229 Ga0466959_0000003 3300045049 Bacteria 285164
230 Ga0451576_0001219 3300045051 Bacteria 45742
231 Ga0451576_0117100 3300045051 Bacteria 2773
232 Ga0495608_0033876 3300046511 Bacteria 3450
233 Ga0495618_0078613 3300046514 Bacteria 2103
234 Ga0495672_0053999 3300047320 Bacteria 2351
235 Ga0496114_0186572 3300048917 Unclassified 1813
236 Ga0496126_0003391 3300048929 Bacteria 20167
237 Ga0501300_001262 3300049523 Bacteria 3821
238 Ga0501032_0002556 3300049569 Bacteria 14243
239 Ga0501033_0053746 3300049570 Bacteria 2982
240 Ga0501034_0002888 3300049571 Bacteria 19981
241 Ga0501034_0010144 3300049571 Bacteria 9829
242 Ga0501034_0029925 3300049571 Bacteria 5535
243 Ga0501043_0004858 3300049579 Bacteria 10861
244 Ga0501047_0025493 3300049581 Bacteria 5684
245 Ga0501047_0051826 3300049581 Bacteria 3966
246 Ga0501073_0025882 3300049589 Bacteria 4203
247 Ga0501202_000401 3300049652 Bacteria 6056
248 Ga0501217_003177 3300049661 Bacteria 3296
249 Ga0501217_005602 3300049661 Bacteria 2632
250 Ga0501257_001373 3300049686 Bacteria 5018
251 Ga0501225_0000311 3300049705 Bacteria 15247
252 Ga0501080_0151828 3300049742 Bacteria 2140
253 Ga0501083_0009661 3300049744 Bacteria 6815
254 Ga0501241_000222 3300049758 Bacteria 12942
255 Ga0501044_0012947 3300049823 Bacteria 9030
256 Ga0501044_0090275 3300049823 Bacteria 3091
257 nmdc:mga0k408_46536_c1 3300050493 Bacteria 2505
258 nmdc:mga05p37_1908_c1 3300050507 Bacteria 24261
259 nmdc:mga08y16_148868_c1 3300050511 Unclassified 2433
260 nmdc:mga08y16_58286_c1 3300050511 Bacteria 4035
261 Ga0500578_0000280 3300053086 Bacteria 62943
262 Ga0500578_0005115 3300053086 Bacteria 9006
263 Ga0500644_0000160 3300053088 Bacteria 42538
264 Ga0500583_0000035 3300053092 Bacteria 96248
265 Ga0500583_0035054 3300053092 Bacteria 2236
266 Ga0500568_0001011 3300053139 Bacteria 19249
267 Ga0500622_0000192 3300053156 Bacteria 64821
268 Ga0500634_0052767 3300053161 Bacteria 2183

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044712 Ga0453684_0089557 Ga0453684_0089557_38_1186 378
2 3300035398 Ga0316574_0099047 Ga0316574_0099047_152_1522 408
3 3300044842 Ga0466957_0001558 Ga0466957_0001558_4479_5801 412
4 3300053086 Ga0500578_0005115 Ga0500578_0005115_6765_8096 415
5 3300003322 rootL2_10153596 rootL2_101535963 418
6 3300053086 Ga0500578_0000280 Ga0500578_0000280_52094_53374 418
7 3300005330 Ga0070690_100003084 Ga0070690_1000030845 422
8 3300005338 Ga0068868_100021099 Ga0068868_1000210993 422
9 3300005456 Ga0070678_100024339 Ga0070678_1000243391 422
10 3300005834 Ga0068851_10057961 Ga0068851_100579612 422
11 3300005842 Ga0068858_100013636 Ga0068858_1000136363 422
12 3300009176 Ga0105242_10133271 Ga0105242_101332711 422
13 3300013308 Ga0157375_10009721 Ga0157375_100097213 422
14 3300014968 Ga0157379_10082541 Ga0157379_100825413 422
15 3300017792 Ga0163161_10006314 Ga0163161_100063142 422
16 3300031901 Ga0307406_10021668 Ga0307406_100216684 422
17 3300031911 Ga0307412_10017256 Ga0307412_100172564 422
18 3300032002 Ga0307416_100000988 Ga0307416_1000009887 422
19 3300049523 Ga0501300_001262 Ga0501300_001262_1680_2993 422
20 3300005327 Ga0070658_10116580 Ga0070658_101165801 423
21 3300005336 Ga0070680_100053779 Ga0070680_1000537794 423
22 3300005455 Ga0070663_100012029 Ga0070663_1000120294 423
23 3300005563 Ga0068855_100002058 Ga0068855_10000205825 423
24 3300025912 Ga0207707_10063262 Ga0207707_100632624 423
25 3300025917 Ga0207660_10022602 Ga0207660_100226025 423
26 3300025921 Ga0207652_10001770 Ga0207652_1000177020 423
27 3300025949 Ga0207667_10001577 Ga0207667_100015776 423
28 3300026067 Ga0207678_10088749 Ga0207678_100887493 423
29 3300026078 Ga0207702_10023103 Ga0207702_100231032 423
30 3300026089 Ga0207648_10041981 Ga0207648_100419813 423
31 3300037312 Ga0395899_0011180 Ga0395899_0011180_4781_6154 423
32 3300037466 Ga0395898_0029503 Ga0395898_0029503_3384_4757 423
33 3300044712 Ga0453684_0008764 Ga0453684_0008764_3374_4738 423
34 3300049571 Ga0501034_0010144 Ga0501034_0010144_1702_3069 423
35 3300009094 Ga0111539_10307678 Ga0111539_103076782 425
36 3300041404 Ga0439436_0000178 Ga0439436_0000178_44_1354 425
37 3300042007 Ga0439449_0000222 Ga0439449_0000222_6250_7560 425
38 3300042014 Ga0439457_000055 Ga0439457_000055_13920_15230 425
39 3300042015 Ga0439462_0000567 Ga0439462_0000567_4758_6068 425
40 3300009174 Ga0105241_10037311 Ga0105241_100373112 426
41 3300049823 Ga0501044_0090275 Ga0501044_0090275_1686_3044 426
42 3300003794 Ga0055531_10000101 Ga0055531_1000010110 427
43 3300005459 Ga0068867_100177210 Ga0068867_1001772101 427
44 3300005530 Ga0070679_100127703 Ga0070679_1001277031 427
45 3300013100 Ga0157373_10044522 Ga0157373_100445224 427
46 3300013105 Ga0157369_10060904 Ga0157369_100609044 427
47 3300025304 Ga0209257_1000025 Ga0209257_1000025234 427
48 3300026089 Ga0207648_10072396 Ga0207648_100723962 427
49 3300026121 Ga0207683_10001848 Ga0207683_100018485 427
50 3300048929 Ga0496126_0003391 Ga0496126_0003391_12079_13404 427
51 3300053156 Ga0500622_0000192 Ga0500622_0000192_6073_7401 427
52 iso_pu_bacteria 2738541278 2738725123 427
53 3300005334 Ga0068869_100022690 Ga0068869_1000226901 428
54 3300005335 Ga0070666_10162173 Ga0070666_101621731 428
55 3300005457 Ga0070662_100171176 Ga0070662_1001711761 428
56 3300009147 Ga0114129_10001395 Ga0114129_1000139514 428
57 3300014968 Ga0157379_10047878 Ga0157379_100478782 428
58 3300031548 Ga0307408_100010100 Ga0307408_1000101002 428
59 3300041496 Ga0451839_0786301 Ga0451839_0786301_756_2084 428
60 3300050507 nmdc:mga05p37_1908_c1 nmdc:mga05p37_1908_c1_12246_13604 428
61 3300006195 Ga0075366_10054599 Ga0075366_100545993 429
62 3300013297 Ga0157378_10076941 Ga0157378_100769413 429
63 3300044712 Ga0453684_0071514 Ga0453684_0071514_1639_3003 429
64 3300049686 Ga0501257_001373 Ga0501257_001373_1608_2951 429
65 3300050493 nmdc:mga0k408_46536_c1 nmdc:mga0k408_46536_c1_214_1584 429
66 3300050511 nmdc:mga08y16_148868_c1 nmdc:mga08y16_148868_c1_147_1469 429
67 iso_pu_bacteria 2833640130 2833643204 429
68 iso_pu_bacteria 2842903701 2842904962 429
69 iso_pu_bacteria 2914759650 2914762433 429
70 3300003316 rootH1_10034188 rootH1_100341882 430
71 3300003323 rootH1_10008093 rootH1_100080939 430
72 3300005334 Ga0068869_100004654 Ga0068869_1000046545 430
73 3300005338 Ga0068868_100058275 Ga0068868_1000582752 430
74 3300005364 Ga0070673_100031058 Ga0070673_1000310582 430
75 3300014745 Ga0157377_10018484 Ga0157377_100184842 430
76 3300049652 Ga0501202_000401 Ga0501202_000401_461_1798 430
77 3300049661 Ga0501217_003177 Ga0501217_003177_978_2324 430
78 3300005341 Ga0070691_10016225 Ga0070691_100162252 431
79 3300005471 Ga0070698_100009143 Ga0070698_1000091432 431
80 3300006844 Ga0075428_100052508 Ga0075428_1000525083 431
81 3300009094 Ga0111539_10030807 Ga0111539_100308072 431
82 3300050511 nmdc:mga08y16_58286_c1 nmdc:mga08y16_58286_c1_1668_3008 431
83 3300005842 Ga0068858_100019045 Ga0068858_1000190453 432
84 3300025907 Ga0207645_10007616 Ga0207645_100076163 432
85 3300025933 Ga0207706_10007864 Ga0207706_100078645 432
86 3300025942 Ga0207689_10013102 Ga0207689_100131025 432
87 3300025981 Ga0207640_10040128 Ga0207640_100401281 432
88 3300026089 Ga0207648_10048780 Ga0207648_100487802 432
89 3300031251 Ga0265327_10001423 Ga0265327_100014233 432
90 3300003322 rootL2_10088568 rootL2_100885682 433
91 3300003794 Ga0055531_10000884 Ga0055531_100008843 433
92 3300025304 Ga0209257_1000005 Ga0209257_1000005296 433
93 3300042876 Ga0451577_0028337 Ga0451577_0028337_2392_3753 433
94 3300044673 Ga0453683_0001057 Ga0453683_0001057_10133_11494 433
95 3300045051 Ga0451576_0117100 Ga0451576_0117100_1386_2747 433
96 iso_pu_bacteria 2842909656 2842912313 433
97 3300003316 rootH1_10147115 rootH1_101471152 434
98 3300005985 Ga0081539_10010948 Ga0081539_100109482 434
99 3300006931 Ga0097620_100146331 Ga0097620_1001463311 434
100 3300039437 Ga0436365_0837122 Ga0436365_0837122_7914_9254 434
101 3300044706 Ga0466964_0049640 Ga0466964_0049640_44_1474 434
102 iso_pu_bacteria 2818991442 2819573446 434
103 3300005616 Ga0068852_100218101 Ga0068852_1002181012 435
104 3300013100 Ga0157373_10096713 Ga0157373_100967132 435
105 3300013296 Ga0157374_10064672 Ga0157374_100646721 435
106 3300013306 Ga0163162_10111724 Ga0163162_101117242 435
107 3300013307 Ga0157372_10026231 Ga0157372_100262313 435
108 3300025909 Ga0207705_10012631 Ga0207705_100126313 435
109 3300025949 Ga0207667_10176451 Ga0207667_101764511 435
110 3300026142 Ga0207698_10191873 Ga0207698_101918731 435
111 3300028794 Ga0307515_10000007 Ga0307515_10000007377 435
112 3300037312 Ga0395899_0030440 Ga0395899_0030440_2040_3410 435
113 3300037418 Ga0395900_0048317 Ga0395900_0048317_630_2000 435
114 3300037466 Ga0395898_0067459 Ga0395898_0067459_1635_3005 435
115 3300044712 Ga0453684_0053580 Ga0453684_0053580_2518_3879 435
116 3300048917 Ga0496114_0186572 Ga0496114_0186572_242_1597 435
117 3300003320 rootH2_10000086 rootH2_1000008636 436
118 3300003320 rootH2_10089935 rootH2_100899352 436
119 3300003320 rootH2_10172800 rootH2_101728001 436
120 3300005355 Ga0070671_100082523 Ga0070671_1000825232 436
121 3300005614 Ga0068856_100143992 Ga0068856_1001439922 436
122 3300013100 Ga0157373_10001085 Ga0157373_100010854 436
123 3300013102 Ga0157371_10002265 Ga0157371_100022659 436
124 3300013104 Ga0157370_10004435 Ga0157370_100044352 436
125 3300013105 Ga0157369_10222722 Ga0157369_102227222 436
126 3300013307 Ga0157372_10064277 Ga0157372_100642773 436
127 3300015261 Ga0182006_1002561 Ga0182006_10025613 436
128 3300026142 Ga0207698_10012882 Ga0207698_100128823 436
129 3300030732 Ga0316176_1033093 Ga0316176_10330937 436
130 3300031344 Ga0265316_10037735 Ga0265316_100377352 436
131 3300031903 Ga0307407_10000027 Ga0307407_1000002771 436
132 3300037471 Ga0395905_0168081 Ga0395905_0168081_386_1750 436
133 3300038443 Ga0395901_0210256 Ga0395901_0210256_165_1535 436
134 iso_pu_bacteria 2821136567 2821136862 436
135 3300003316 rootH1_10098102 rootH1_100981022 437
136 3300005577 Ga0068857_100182796 Ga0068857_1001827962 437
137 3300005985 Ga0081539_10000042 Ga0081539_1000004216 437
138 3300013102 Ga0157371_10013154 Ga0157371_100131544 437
139 3300013307 Ga0157372_10130641 Ga0157372_101306411 437
140 3300013307 Ga0157372_10137841 Ga0157372_101378412 437
141 3300025904 Ga0207647_10001709 Ga0207647_100017096 437
142 3300026116 Ga0207674_10205867 Ga0207674_102058671 437
143 3300030742 Ga0316183_1153674 Ga0316183_115367453 437
144 3300030744 Ga0316181_1042054 Ga0316181_10420543 437
145 3300032168 Ga0316593_10000396 Ga0316593_100003963 437
146 3300044712 Ga0453684_0008756 Ga0453684_0008756_12347_13687 437
147 3300045051 Ga0451576_0001219 Ga0451576_0001219_33029_34369 437
148 3300005339 Ga0070660_100075703 Ga0070660_1000757032 438
149 3300005364 Ga0070673_100096135 Ga0070673_1000961352 438
150 3300005366 Ga0070659_100060671 Ga0070659_1000606713 438
151 3300009093 Ga0105240_10044515 Ga0105240_100445154 438
152 3300013105 Ga0157369_10150901 Ga0157369_101509012 438
153 3300013306 Ga0163162_10161782 Ga0163162_101617822 438
154 3300015265 Ga0182005_1000489 Ga0182005_10004897 438
155 3300025919 Ga0207657_10023078 Ga0207657_100230785 438
156 3300025942 Ga0207689_10159260 Ga0207689_101592601 438
157 3300028381 Ga0268264_10057672 Ga0268264_100576722 438
158 3300003316 rootH1_10071281 rootH1_100712813 439
159 3300003322 rootL2_10001382 rootL2_100013821 439
160 3300005365 Ga0070688_100042790 Ga0070688_1000427902 439
161 3300005563 Ga0068855_100005751 Ga0068855_10000575113 439
162 3300005842 Ga0068858_100024689 Ga0068858_1000246892 439
163 3300009174 Ga0105241_10041001 Ga0105241_100410012 439
164 3300009176 Ga0105242_10048661 Ga0105242_100486612 439
165 3300009553 Ga0105249_10016397 Ga0105249_100163972 439
166 3300010375 Ga0105239_10000456 Ga0105239_100004569 439
167 3300013306 Ga0163162_10121783 Ga0163162_101217832 439
168 3300013308 Ga0157375_10058343 Ga0157375_100583432 439
169 3300025246 Ga0209646_1001916 Ga0209646_10019162 439
170 3300025911 Ga0207654_10061910 Ga0207654_100619102 439
171 3300025949 Ga0207667_10005628 Ga0207667_1000562812 439
172 3300025960 Ga0207651_10155022 Ga0207651_101550222 439
173 3300025961 Ga0207712_10005522 Ga0207712_100055225 439
174 3300026088 Ga0207641_10000850 Ga0207641_1000085011 439
175 3300026116 Ga0207674_10119169 Ga0207674_101191692 439
176 3300026118 Ga0207675_100119277 Ga0207675_1001192772 439
177 3300031456 Ga0307513_10119913 Ga0307513_101199132 439
178 3300031901 Ga0307406_10105872 Ga0307406_101058721 439
179 3300032002 Ga0307416_100058428 Ga0307416_1000584282 439
180 3300032126 Ga0307415_100006538 Ga0307415_1000065382 439
181 3300044658 Ga0466972_0000009 Ga0466972_0000009_176590_177948 439
182 3300044712 Ga0453684_0005708 Ga0453684_0005708_13080_14465 439
183 3300044842 Ga0466957_0000046 Ga0466957_0000046_16691_18049 439
184 3300047320 Ga0495672_0053999 Ga0495672_0053999_576_1964 439
185 3300049570 Ga0501033_0053746 Ga0501033_0053746_637_2004 439
186 3300049571 Ga0501034_0029925 Ga0501034_0029925_3556_4923 439
187 3300049581 Ga0501047_0051826 Ga0501047_0051826_1371_2729 439
188 3300049661 Ga0501217_005602 Ga0501217_005602_58_1422 439
189 3300049705 Ga0501225_0000311 Ga0501225_0000311_8447_9898 439
190 3300049823 Ga0501044_0012947 Ga0501044_0012947_2779_4146 439
191 3300053092 Ga0500583_0000035 Ga0500583_0000035_81679_83148 439
192 3300053092 Ga0500583_0035054 Ga0500583_0035054_106_1608 439
193 3300005262 Ga0065165_1011817 Ga0065165_10118172 440
194 3300005288 Ga0065714_10087835 Ga0065714_100878351 440
195 3300005290 Ga0065712_10001172 Ga0065712_100011724 440
196 3300005290 Ga0065712_10003744 Ga0065712_100037442 440
197 3300005331 Ga0070670_100009280 Ga0070670_1000092807 440
198 3300005334 Ga0068869_100034270 Ga0068869_1000342702 440
199 3300005339 Ga0070660_100056392 Ga0070660_1000563922 440
200 3300005340 Ga0070689_100015429 Ga0070689_1000154292 440
201 3300005353 Ga0070669_100010191 Ga0070669_1000101913 440
202 3300005354 Ga0070675_100078643 Ga0070675_1000786432 440
203 3300005364 Ga0070673_100004658 Ga0070673_1000046584 440
204 3300005365 Ga0070688_100014512 Ga0070688_1000145122 440
205 3300005367 Ga0070667_100277601 Ga0070667_1002776011 440
206 3300005466 Ga0070685_10004205 Ga0070685_100042053 440
207 3300005543 Ga0070672_100049547 Ga0070672_1000495472 440
208 3300005544 Ga0070686_100066572 Ga0070686_1000665722 440
209 3300005563 Ga0068855_100132108 Ga0068855_1001321082 440
210 3300005577 Ga0068857_100154133 Ga0068857_1001541332 440
211 3300005617 Ga0068859_100125882 Ga0068859_1001258822 440
212 3300005719 Ga0068861_100002756 Ga0068861_10000275610 440
213 3300005840 Ga0068870_10016681 Ga0068870_100166812 440
214 3300005844 Ga0068862_100041703 Ga0068862_1000417032 440
215 3300006931 Ga0097620_100125873 Ga0097620_1001258732 440
216 3300013102 Ga0157371_10006734 Ga0157371_100067347 440
217 3300013307 Ga0157372_10062289 Ga0157372_100622892 440
218 3300014326 Ga0157380_10141330 Ga0157380_101413302 440
219 3300014745 Ga0157377_10010504 Ga0157377_100105042 440
220 3300025208 Ga0209436_102141 Ga0209436_1021412 440
221 3300025908 Ga0207643_10001378 Ga0207643_100013786 440
222 3300025925 Ga0207650_10036911 Ga0207650_100369113 440
223 3300025926 Ga0207659_10008524 Ga0207659_100085243 440
224 3300025938 Ga0207704_10030892 Ga0207704_100308922 440
225 3300025940 Ga0207691_10013076 Ga0207691_100130762 440
226 3300025942 Ga0207689_10039201 Ga0207689_100392012 440
227 3300026041 Ga0207639_10041717 Ga0207639_100417172 440
228 3300026118 Ga0207675_100005762 Ga0207675_1000057622 440
229 3300026121 Ga0207683_10050305 Ga0207683_100503052 440
230 3300042876 Ga0451577_0002970 Ga0451577_0002970_9016_10380 440
231 3300044656 Ga0466969_0001926 Ga0466969_0001926_7957_9318 440
232 3300044706 Ga0466964_0031614 Ga0466964_0031614_202_1563 440
233 3300045049 Ga0466959_0000003 Ga0466959_0000003_276278_277639 440
234 3300053088 Ga0500644_0000160 Ga0500644_0000160_28233_29594 440
235 3300053161 Ga0500634_0052767 Ga0500634_0052767_33_1403 440
236 3300002459 JGI24751J29686_10000545 JGI24751J29686_100005457 441
237 3300003320 rootH2_10011701 rootH2_100117014 441
238 3300003322 rootL2_10078423 rootL2_100784231 441
239 3300005329 Ga0070683_100040203 Ga0070683_1000402032 441
240 3300005563 Ga0068855_100144112 Ga0068855_1001441122 441
241 3300006237 Ga0097621_100006579 Ga0097621_1000065791 441
242 3300009553 Ga0105249_10000984 Ga0105249_100009845 441
243 3300013100 Ga0157373_10013139 Ga0157373_100131394 441
244 3300013104 Ga0157370_10132101 Ga0157370_101321012 441
245 3300013297 Ga0157378_10098147 Ga0157378_100981473 441
246 3300013297 Ga0157378_10105247 Ga0157378_101052472 441
247 3300013306 Ga0163162_10001345 Ga0163162_100013456 441
248 3300013306 Ga0163162_10147163 Ga0163162_101471632 441
249 3300014325 Ga0163163_10035036 Ga0163163_100350363 441
250 3300014969 Ga0157376_10047117 Ga0157376_100471172 441
251 3300025913 Ga0207695_10000483 Ga0207695_100004835 441
252 3300025919 Ga0207657_10019494 Ga0207657_100194942 441
253 3300025944 Ga0207661_10005362 Ga0207661_100053625 441
254 3300025949 Ga0207667_10036312 Ga0207667_100363123 441
255 3300025981 Ga0207640_10069445 Ga0207640_100694452 441
256 3300026088 Ga0207641_10066399 Ga0207641_100663992 441
257 3300026142 Ga0207698_10057332 Ga0207698_100573322 441
258 3300026142 Ga0207698_10115743 Ga0207698_101157432 441
259 3300031595 Ga0265313_10011322 Ga0265313_100113222 441
260 3300035086 Ga0373934_0009459 Ga0373934_0009459_81_1451 441
261 3300037068 Ga0373925_0088126 Ga0373925_0088126_868_2238 441
262 3300041997 Ga0439431_0016467 Ga0439431_0016467_258_1634 441
263 3300044712 Ga0453684_0000721 Ga0453684_0000721_40096_41460 441
264 3300044712 Ga0453684_0091983 Ga0453684_0091983_1618_2976 441
265 3300046511 Ga0495608_0033876 Ga0495608_0033876_22_1392 441
266 3300046514 Ga0495618_0078613 Ga0495618_0078613_260_1630 441
267 3300049569 Ga0501032_0002556 Ga0501032_0002556_2791_4155 441
268 3300049571 Ga0501034_0002888 Ga0501034_0002888_11104_12468 441
269 3300049579 Ga0501043_0004858 Ga0501043_0004858_3923_5287 441
270 3300049581 Ga0501047_0025493 Ga0501047_0025493_302_1666 441
271 3300049589 Ga0501073_0025882 Ga0501073_0025882_1817_3181 441
272 3300049742 Ga0501080_0151828 Ga0501080_0151828_47_1411 441
273 3300049744 Ga0501083_0009661 Ga0501083_0009661_1587_2951 441
274 3300049758 Ga0501241_000222 Ga0501241_000222_1092_2462 441
275 3300053139 Ga0500568_0001011 Ga0500568_0001011_6714_8075 441

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF10091

Glycoamylase

Putative glucoamylase

262

483

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
5gzk-assembly2.cif.gz_B endo-beta-1,2-glucanase from chitinophaga pinensis - sophorotriose and glucose complex 0.9955 24 439
5gzk-assembly2.cif.gz_B endo-beta-1,2-glucanase from chitinophaga pinensis - sophorotriose and glucose complex 0.9884 24 439
4qt9-assembly2.cif.gz_B crystal structure of a putative glucoamylase (baccac_03554) from bacteroides caccae atcc 43185 at 2.05 a resolution 0.9878 25 437
3eu8-assembly4.cif.gz_D crystal structure of putative glucoamylase (yp_210071.1) from bacteroides fragilis nctc 9343 at 2.12 a resolution 0.9849 19 436
4qt9-assembly2.cif.gz_B crystal structure of a putative glucoamylase (baccac_03554) from bacteroides caccae atcc 43185 at 2.05 a resolution 0.983 25 437
ID Description Score Start End Superfamily
5gzhA00 Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase;Glycoside hydrolase 144 (GH144) 0.9952 24 441 1.50.10.140
5gzhA00 Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase;Glycoside hydrolase 144 (GH144) 0.9743 24 441 1.50.10.140
af_Q55FF9_20_479_1.50.10.10 Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; 0.7406 21 409 1.50.10.10
af_A1Z7K2_438_544_1.25.10.10 Mainly Alpha;Alpha Horseshoe;Leucine-rich Repeat Variant;Leucine-rich Repeat Variant 0.6742 147 187 1.25.10.10
af_Q55FF9_20_479_1.50.10.10 Mainly Alpha;Alpha/alpha barrel;Glycosyltransferase; 0.6616 21 409 1.50.10.10
ID Description Score Start End GO Terms
AF-A0A7Y4V7S4-F1-model_v4 Beta-glucosidase 0.999 34 210
AF-A0A3D3CSF6-F1-model_v4 Beta-glucosidase 0.9976 344 441
AF-A0A1E4F1H8-F1-model_v4 Beta-glucosidase 0.9973 29 436
AF-A0A519XCA8-F1-model_v4 Beta-glucosidase 0.9944 22 210
AF-A0A2R7LVF3-F1-model_v4 Beta-glucosidase 0.994 22 269

Feature Viewer

pLDDT pTM Quality
95.31 0.92 High
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Predicted Structure (AlphaFold2)

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