F380001

General Info

Members Datasets Scaffolds Average Seq Length
274 173 220 286

Family's Representative Sequence

Representative Sequence 3300048921|Ga0496118_0064975|Ga0496118_0064975_200_1144
Length 314
Sequence MSGPVTDTRDLFAAVPRSDFDVPGKSRGLIDVVRWRYLLRLLVRTGVTTRYRNSVLGWTWSYVRPAAQFLVFWIVLGVFMQLDHGIPNYAVYLFSGIVVINLFSEGFKNATTSIVGNAPLVRKVFLPRQLFAVSAVIVAFVHFLPQAALLLIVCLLLGWAAHMTVLSVLAILAGMLIVMIFSLGLGLFFGAINVRYRDAENIVELMLLLATWASPVLYAWTMVQTAVVDRLQWPSWIVELYMLNPITQGVELFHYAFWRPATEGMITAASKSQLLELPPGLAWNTLWTFLIAVGTLLLGQLVFRRLEGRFAQDL

Samples

Sample ID Description Type Environment
1 2643221546 Microbacterium sp. Root53 Isolate Unclassified
2 2643221553 Microbacterium sp. Root553 Isolate Unclassified
3 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
4 2643221572 Leifsonia sp. Root60 Isolate Unclassified
5 2643221597 Microbacterium sp. Root180 Isolate Unclassified
6 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
7 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
8 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
9 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
10 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
11 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
12 2773857759 Microbacterium sp. 1294 Isolate Unclassified
13 2773857763 Microbacterium sp. SAI-030 Isolate Unclassified
14 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
15 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
16 2808606370 Arthrobacter sp. SLBN-100 Isolate Unclassified
17 2808606371 Arthrobacter sp. SLBN-53 Isolate Unclassified
18 2808606700 Arthrobacter agilis UMCV2 Isolate Rhizosphere
19 2811994872 Microbacterium sp. MU4Y-5-1 Isolate Unclassified
20 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
21 2844849076 Arthrobacter cupressi DSM 24664 Isolate Rhizosphere
22 2852646457 Microbacterium sp. AK031 Isolate Rhizosphere
23 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
24 2857720070 Microbacterium sp. R-72113 Isolate Unclassified
25 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
26 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
27 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
28 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
29 2906799679 Microbacterium karelineae TRM80801 Isolate Unclassified
30 2919395869 Microbacterium resistens 2980 Isolate Unclassified
31 2919446982 Phycicoccus sp. 3266 Isolate Rhizosphere
32 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
33 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
34 2945941187 Arthrobacter pascens W1I14 Isolate Rhizosphere
35 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
36 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
37 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
38 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
39 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
40 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
41 2977264416 Microbacterium testaceum SORGH_AS 594 Isolate Unclassified
42 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
43 2984592036 Aeromicrobium sp. SORGH_AS981 Isolate Aerial Root
44 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
45 3002998708 Actinomadura barringtoniae GKU 128 Isolate Unclassified
46 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
47 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
48 3300003735 Avena fatua rhizosphere microbial communities - H4_Bulk_Litter_23 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
49 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
50 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
51 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
52 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
53 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
54 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
55 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
56 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
57 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
58 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
59 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
60 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
61 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
62 3300020075 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
63 3300020076 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3) (version 3) Metatranscriptome Rhizosphere
64 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
65 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
66 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
67 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
68 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
69 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
75 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
76 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
77 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
78 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
79 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
80 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
81 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
82 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
83 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
84 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
85 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
86 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
87 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
88 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
89 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
90 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
91 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
92 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
93 3300042011 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0220FE14Z062817_5204 Metagenome Rhizosphere
94 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
95 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
96 3300042121 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515D_E14_082716_2398 Metagenome Rhizosphere
97 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
98 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
99 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
100 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
101 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
102 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
103 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
104 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
105 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
106 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
107 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
108 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
109 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
110 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
111 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
112 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
113 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
114 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
115 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
116 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
117 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
118 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
119 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
120 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
121 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
122 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
123 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
124 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
125 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
126 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
127 3300049541 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_A_4_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
128 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
131 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
133 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
134 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
135 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
136 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
139 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
140 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
143 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
144 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
145 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
146 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
147 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
148 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
149 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
150 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
151 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
152 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
153 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
154 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
155 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
156 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
157 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
158 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
159 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
160 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
161 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
162 3300059477 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 50R_CW_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
163 3300059508 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 53R_CD_T2_R1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
164 3300060346 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 169R_CW_T3_R4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
165 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
166 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
167 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
168 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
169 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
170 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
171 8053945823 Actinomadura terrae OS3-83 Isolate Rhizosphere
172 8054107350 Arthrobacter rhizosphaerae CCNWLXL 1-35 Isolate Rhizosphere
173 8055034563 Leucobacter allii H21R-40 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 76.28
Metatranscriptomes 4.01
Isolates 19.71

Biome Distribution

Category Percentage (%)
Aerial Root 0.73
Bulb 0
Endosphere 4.01
Nodule 0
Rhizoplane 2.19
Rhizosphere 74.82
Stem 0
Stem Tuber 0
Unclassified 18.25

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 LJQas_1000899 3300000549 Bacteria 4624
2 LJQas_1002633 3300000549 Bacteria 2472
3 JGI25152J39213_1000116 3300002773 Bacteria 55384
4 Ga0006780_1008340 3300003735 Bacteria 1860
5 Ga0065714_10003505 3300005288 Bacteria 10710
6 Ga0065714_10081713 3300005288 Bacteria 2355
7 Ga0065714_10135749 3300005288 Bacteria 1211
8 Ga0070660_100257936 3300005339 Bacteria 1423
9 Ga0070714_100019206 3300005435 Bacteria 5563
10 Ga0068853_100355139 3300005539 Bacteria 1364
11 Ga0075365_10136076 3300006038 Bacteria 1703
12 Ga0075364_10054013 3300006051 Bacteria 2626
13 Ga0075364_10196285 3300006051 Bacteria 1367
14 Ga0105244_10013159 3300009036 Bacteria 4847
15 Ga0105243_10109310 3300009148 Bacteria 2309
16 Ga0105246_10000417 3300011119 Bacteria 22760
17 Ga0105246_10002120 3300011119 Bacteria 11971
18 Ga0157370_10086619 3300013104 Bacteria 2942
19 Ga0157369_10005266 3300013105 Bacteria 15080
20 Ga0157372_10243670 3300013307 Bacteria 2086
21 Ga0197907_11027450 3300020069 Bacteria 1019
22 Ga0206349_1061123 3300020075 Bacteria 1083
23 Ga0206355_1346616 3300020076 Bacteria 1518
24 Ga0206352_10787769 3300020078 Bacteria 1703
25 Ga0224712_10073380 3300022467 Bacteria 1396
26 Ga0224712_10143774 3300022467 Bacteria 1052
27 Ga0209759_1016238 3300025256 Bacteria 1889
28 Ga0209129_1000028 3300025258 Bacteria 405451
29 Ga0209025_1000655 3300025294 Bacteria 60278
30 Ga0207655_1063610 3300025728 Bacteria 1412
31 Ga0207664_10028205 3300025929 Bacteria 4264
32 Ga0207709_10075959 3300025935 Bacteria 2149
33 Ga0207658_10006018 3300025986 Bacteria 8287
34 Ga0207639_10279078 3300026041 Bacteria 1469
35 Ga0307408_100007768 3300031548 Bacteria 7087
36 Ga0307408_100008090 3300031548 Bacteria 6952
37 Ga0307408_100015300 3300031548 Bacteria 5108
38 Ga0307405_10008086 3300031731 Bacteria 5310
39 Ga0307405_10316430 3300031731 Bacteria 1190
40 Ga0307413_10029619 3300031824 Bacteria 3065
41 Ga0307410_10000589 3300031852 Bacteria 14976
42 Ga0307410_10028789 3300031852 Bacteria 3528
43 Ga0307410_10102726 3300031852 Bacteria 2052
44 Ga0307406_10000076 3300031901 Bacteria 54482
45 Ga0307406_10018439 3300031901 Bacteria 4078
46 Ga0307406_10037405 3300031901 Bacteria 2997
47 Ga0307407_10011141 3300031903 Bacteria 4269
48 Ga0307407_10067670 3300031903 Bacteria 2112
49 Ga0307412_10019641 3300031911 Bacteria 4097
50 Ga0307412_10026004 3300031911 Bacteria 3633
51 Ga0307412_10082189 3300031911 Bacteria 2230
52 Ga0307409_100009783 3300031995 Bacteria 5914
53 Ga0307409_100020614 3300031995 Bacteria 4498
54 Ga0307409_100167299 3300031995 Bacteria 1931
55 Ga0307416_100368003 3300032002 Bacteria 1462
56 Ga0307414_10243531 3300032004 Bacteria 1490
57 Ga0395899_0005655 3300037312 Bacteria 9704
58 Ga0395901_0044001 3300038443 Bacteria 4631
59 Ga0395901_0082195 3300038443 Bacteria 3365
60 Ga0439436_0000197 3300041404 Bacteria 14452
61 Ga0439436_0000492 3300041404 Bacteria 10253
62 Ga0439436_0005429 3300041404 Bacteria 3905
63 Ga0439439_0000041 3300041406 Bacteria 15829
64 Ga0439433_0000004 3300041999 Bacteria 39895
65 Ga0439433_0007344 3300041999 Bacteria 2378
66 Ga0439433_0016568 3300041999 Bacteria 1633
67 Ga0439442_000001 3300042002 Bacteria 161142
68 Ga0439442_000132 3300042002 Bacteria 18441
69 Ga0439442_000243 3300042002 Bacteria 13300
70 Ga0439442_001510 3300042002 Bacteria 4589
71 Ga0439442_020344 3300042002 Bacteria 1375
72 Ga0439432_000230 3300042006 Bacteria 20108
73 Ga0439449_0000113 3300042007 Bacteria 26526
74 Ga0439449_0004914 3300042007 Bacteria 5147
75 Ga0439449_0020934 3300042007 Bacteria 2451
76 Ga0439449_0029346 3300042007 Bacteria 2050
77 Ga0439449_0059949 3300042007 Bacteria 1404
78 Ga0439452_001105 3300042010 Bacteria 11862
79 Ga0439454_017807 3300042011 Bacteria 1018
80 Ga0439457_001664 3300042014 Bacteria 6605
81 Ga0439462_0000133 3300042015 Bacteria 11814
82 Ga0439462_0000795 3300042015 Bacteria 6561
83 Ga0439462_0063859 3300042015 Bacteria 997
84 Ga0450919_000074 3300042121 Bacteria 9367
85 Ga0450919_006008 3300042121 Bacteria 1445
86 Ga0450920_000059 3300042122 Bacteria 14165
87 Ga0450920_000063 3300042122 Bacteria 13656
88 Ga0450920_000115 3300042122 Bacteria 10655
89 Ga0450907_000273 3300042146 Bacteria 17356
90 Ga0450907_000303 3300042146 Bacteria 16503
91 Ga0450907_001114 3300042146 Bacteria 6141
92 Ga0450909_000489 3300042185 Bacteria 5148
93 Ga0450909_003105 3300042185 Bacteria 2360
94 Ga0439434_0000093 3300042435 Bacteria 22456
95 Ga0439434_0000143 3300042435 Bacteria 19107
96 Ga0450918_000276 3300042531 Bacteria 11660
97 Ga0450918_000757 3300042531 Bacteria 6845
98 Ga0450918_001505 3300042531 Bacteria 4607
99 Ga0466965_0000008 3300044683 Bacteria 131465
100 Ga0466959_0006111 3300045049 Bacteria 8317
101 Ga0466967_0276297 3300045976 Bacteria 1611
102 Ga0495627_000904 3300046453 Bacteria 20706
103 Ga0495580_0010835 3300046472 Bacteria 7074
104 Ga0495580_0016142 3300046472 Bacteria 5612
105 Ga0495639_0001561 3300046475 Bacteria 10237
106 Ga0495586_0001724 3300046535 Bacteria 11939
107 Ga0495586_0308230 3300046535 Bacteria 907
108 Ga0495645_0144935 3300046543 Bacteria 1654
109 Ga0495588_0000955 3300046674 Bacteria 12599
110 Ga0495600_0012855 3300046809 Bacteria 5244
111 Ga0495581_0001814 3300047315 Bacteria 11948
112 Ga0495593_0010220 3300047673 Bacteria 5427
113 Ga0496102_0040433 3300048905 Bacteria 4218
114 Ga0496103_0190122 3300048906 Bacteria 1320
115 Ga0496105_0003624 3300048908 Bacteria 11474
116 Ga0496105_0218170 3300048908 Bacteria 1553
117 Ga0496114_0054359 3300048917 Bacteria 3339
118 Ga0496114_0184231 3300048917 Bacteria 1824
119 Ga0496117_0001658 3300048920 Bacteria 31204
120 Ga0496118_0008548 3300048921 Bacteria 10554
121 Ga0496118_0064975 3300048921 Bacteria 2673
122 Ga0496119_0017702 3300048922 Bacteria 5347
123 Ga0496120_0001838 3300048923 Bacteria 23651
124 Ga0496122_0000522 3300048925 Bacteria 79377
125 Ga0496122_0003004 3300048925 Bacteria 22932
126 Ga0496123_0000251 3300048926 Bacteria 108664
127 Ga0496123_0009604 3300048926 Bacteria 8686
128 Ga0496123_0042496 3300048926 Bacteria 3136
129 Ga0496124_0001505 3300048927 Bacteria 34041
130 Ga0496124_0002708 3300048927 Bacteria 22632
131 Ga0496125_0000242 3300048928 Bacteria 112000
132 Ga0496125_0001080 3300048928 Bacteria 41975
133 Ga0496125_0022139 3300048928 Bacteria 5908
134 Ga0496125_0036711 3300048928 Bacteria 4272
135 Ga0496126_0003066 3300048929 Bacteria 21639
136 Ga0496126_0004920 3300048929 Bacteria 15591
137 Ga0496126_0006319 3300048929 Bacteria 13229
138 Ga0496126_0014320 3300048929 Bacteria 8019
139 Ga0496126_0017646 3300048929 Bacteria 7109
140 Ga0496126_0018392 3300048929 Bacteria 6925
141 Ga0496126_0071680 3300048929 Bacteria 3084
142 Ga0501325_003656 3300049541 Bacteria 1134
143 Ga0501031_0018853 3300049568 Bacteria 4492
144 Ga0501031_0042609 3300049568 Bacteria 2962
145 Ga0501032_0012580 3300049569 Bacteria 6042
146 Ga0501032_0028703 3300049569 Bacteria 3822
147 Ga0501032_0032470 3300049569 Bacteria 3578
148 Ga0501033_0000716 3300049570 Bacteria 30429
149 Ga0501033_0027122 3300049570 Bacteria 4309
150 Ga0501033_0357606 3300049570 Bacteria 1022
151 Ga0501034_0001286 3300049571 Bacteria 33921
152 Ga0501034_0055319 3300049571 Bacteria 3993
153 Ga0501034_0114773 3300049571 Bacteria 2682
154 Ga0501034_0115226 3300049571 Bacteria 2676
155 Ga0501036_0001492 3300049572 Bacteria 18029
156 Ga0501036_0003175 3300049572 Bacteria 13116
157 Ga0501036_0202770 3300049572 Bacteria 1668
158 Ga0501037_0002321 3300049573 Bacteria 13750
159 Ga0501037_0027750 3300049573 Bacteria 4184
160 Ga0501037_0341909 3300049573 Bacteria 1033
161 Ga0501038_0039748 3300049574 Bacteria 4114
162 Ga0501039_0009037 3300049575 Bacteria 7592
163 Ga0501039_0036321 3300049575 Bacteria 3802
164 Ga0501040_0007065 3300049576 Bacteria 7278
165 Ga0501040_0216092 3300049576 Bacteria 1363
166 Ga0501041_0144428 3300049577 Bacteria 1484
167 Ga0501042_0017312 3300049578 Bacteria 4968
168 Ga0501042_0025959 3300049578 Bacteria 4117
169 Ga0501043_0013183 3300049579 Bacteria 6465
170 Ga0501043_0016245 3300049579 Bacteria 5838
171 Ga0501046_0005955 3300049580 Bacteria 10854
172 Ga0501046_0032405 3300049580 Bacteria 4231
173 Ga0501046_0128350 3300049580 Bacteria 1924
174 Ga0501047_0003331 3300049581 Bacteria 15220
175 Ga0501047_0023095 3300049581 Bacteria 5970
176 Ga0501047_0031038 3300049581 Bacteria 5152
177 Ga0501047_0295761 3300049581 Bacteria 1462
178 Ga0501048_0000604 3300049582 Bacteria 25537
179 Ga0501048_0003886 3300049582 Bacteria 11367
180 Ga0501070_0394876 3300049586 Bacteria 1119
181 Ga0501071_0094028 3300049587 Bacteria 2204
182 Ga0501071_0102609 3300049587 Bacteria 2109
183 Ga0501072_0033311 3300049588 Bacteria 4037
184 Ga0501072_0172206 3300049588 Bacteria 1727
185 Ga0501073_0006990 3300049589 Bacteria 8408
186 Ga0501073_0158873 3300049589 Bacteria 1566
187 Ga0501074_0007325 3300049590 Bacteria 7977
188 Ga0501074_0090234 3300049590 Bacteria 2195
189 Ga0501074_0093311 3300049590 Bacteria 2155
190 Ga0501074_0212658 3300049590 Bacteria 1377
191 Ga0501075_0031534 3300049591 Bacteria 3935
192 Ga0501076_0023686 3300049592 Bacteria 4735
193 Ga0501077_0040085 3300049593 Bacteria 2984
194 Ga0501077_0173320 3300049593 Bacteria 1371
195 Ga0501080_0056982 3300049742 Bacteria 3639
196 Ga0501080_0135647 3300049742 Bacteria 2278
197 Ga0501081_0011293 3300049743 Bacteria 5842
198 Ga0501081_0043965 3300049743 Bacteria 3065
199 Ga0501083_0000053 3300049744 Bacteria 83252
200 Ga0501035_0001900 3300049822 Bacteria 20989
201 Ga0501035_0007765 3300049822 Bacteria 10022
202 Ga0501035_0087582 3300049822 Bacteria 2744
203 Ga0501044_0004938 3300049823 Bacteria 14916
204 Ga0501044_0032393 3300049823 Bacteria 5495
205 Ga0501045_0007578 3300049824 Bacteria 7544
206 Ga0501045_0010062 3300049824 Bacteria 6615
207 Ga0501045_0321240 3300049824 Bacteria 1152
208 nmdc:mga00v17_113667_c1 3300050491 Bacteria 1719
209 nmdc:mga00v17_142088_c1 3300050491 Bacteria 1539
210 nmdc:mga0yw44_57369_c1 3300050492 Bacteria 2375
211 nmdc:mga06z11_72633_c1 3300050494 Bacteria 1824
212 nmdc:mga07m45_182468_c1 3300050496 Bacteria 1220
213 Ga0501084_0032648 3300054114 Bacteria 4354
214 Ga0501084_0156113 3300054114 Bacteria 1924
215 Ga0587084_002520 3300059477 Bacteria 1910
216 Ga0587088_032618 3300059508 Bacteria 939
217 Ga0587111_0012621 3300060346 Bacteria 1496
218 Ga0501082_0060660 3300060353 Bacteria 3256
219 Ga0501082_0067830 3300060353 Bacteria 3072
220 Ga0530510_0161677 3300061734 Bacteria 1656

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300042007 Ga0439449_0059949 Ga0439449_0059949_667_1374 201
2 3300031901 Ga0307406_10018439 Ga0307406_100184394 208
3 3300042011 Ga0439454_017807 Ga0439454_017807_257_997 210
4 3300050496 nmdc:mga07m45_182468_c1 nmdc:mga07m45_182468_c1_21_839 212
5 iso_pu_bacteria 2852646457 2852646816 214
6 3300046535 Ga0495586_0308230 Ga0495586_0308230_35_817 219
7 3300048928 Ga0496125_0001080 Ga0496125_0001080_25621_26388 222
8 3300048929 Ga0496126_0017646 Ga0496126_0017646_182_949 222
9 3300049569 Ga0501032_0012580 Ga0501032_0012580_753_1523 222
10 3300049571 Ga0501034_0115226 Ga0501034_0115226_1415_2185 222
11 3300049573 Ga0501037_0002321 Ga0501037_0002321_7136_7906 222
12 3300049581 Ga0501047_0023095 Ga0501047_0023095_5067_5837 222
13 3300049589 Ga0501073_0006990 Ga0501073_0006990_5070_5840 222
14 3300049742 Ga0501080_0056982 Ga0501080_0056982_1533_2303 222
15 3300049822 Ga0501035_0001900 Ga0501035_0001900_14554_15324 222
16 3300049823 Ga0501044_0032393 Ga0501044_0032393_755_1525 222
17 3300049574 Ga0501038_0039748 Ga0501038_0039748_3234_4088 225
18 3300049581 Ga0501047_0295761 Ga0501047_0295761_40_918 231
19 3300049590 Ga0501074_0007325 Ga0501074_0007325_2666_3562 231
20 3300006051 Ga0075364_10196285 Ga0075364_101962852 232
21 3300009036 Ga0105244_10013159 Ga0105244_100131591 232
22 3300025728 Ga0207655_1063610 Ga0207655_10636102 232
23 3300037312 Ga0395899_0005655 Ga0395899_0005655_6620_7483 232
24 3300049568 Ga0501031_0018853 Ga0501031_0018853_2802_3710 232
25 3300049570 Ga0501033_0357606 Ga0501033_0357606_82_990 232
26 3300049578 Ga0501042_0017312 Ga0501042_0017312_3254_4162 232
27 3300049590 Ga0501074_0090234 Ga0501074_0090234_1257_2165 232
28 3300050491 nmdc:mga00v17_113667_c1 nmdc:mga00v17_113667_c1_169_1083 232
29 3300054114 Ga0501084_0032648 Ga0501084_0032648_839_1747 232
30 3300003735 Ga0006780_1008340 Ga0006780_10083401 233
31 3300059477 Ga0587084_002520 Ga0587084_002520_123_1040 233
32 3300060346 Ga0587111_0012621 Ga0587111_0012621_463_1380 233
33 3300006051 Ga0075364_10054013 Ga0075364_100540133 234
34 3300049569 Ga0501032_0032470 Ga0501032_0032470_569_1516 235
35 3300049572 Ga0501036_0001492 Ga0501036_0001492_8759_9706 235
36 3300049576 Ga0501040_0007065 Ga0501040_0007065_3774_4721 235
37 3300049580 Ga0501046_0032405 Ga0501046_0032405_792_1739 235
38 3300049587 Ga0501071_0094028 Ga0501071_0094028_833_1780 235
39 3300049588 Ga0501072_0033311 Ga0501072_0033311_1973_2920 235
40 3300049592 Ga0501076_0023686 Ga0501076_0023686_2987_3934 235
41 3300049742 Ga0501080_0135647 Ga0501080_0135647_334_1281 235
42 3300049743 Ga0501081_0011293 Ga0501081_0011293_789_1736 235
43 3300049824 Ga0501045_0010062 Ga0501045_0010062_2988_3935 235
44 3300060353 Ga0501082_0060660 Ga0501082_0060660_2175_3122 235
45 3300061734 Ga0530510_0161677 Ga0530510_0161677_293_1240 235
46 3300046472 Ga0495580_0016142 Ga0495580_0016142_890_1702 236
47 3300038443 Ga0395901_0044001 Ga0395901_0044001_1474_2346 238
48 3300031901 Ga0307406_10000076 Ga0307406_1000007630 239
49 iso_pu_bacteria 2808606700 2810364199 241
50 iso_pu_bacteria 2811994872 2812322378 241
51 iso_pu_bacteria 2852663356 2852664649 241
52 iso_pu_bacteria 2857723135 2857723270 241
53 3300025986 Ga0207658_10006018 Ga0207658_100060183 242
54 3300049571 Ga0501034_0055319 Ga0501034_0055319_420_1316 244
55 3300049572 Ga0501036_0003175 Ga0501036_0003175_10879_11775 244
56 3300049575 Ga0501039_0036321 Ga0501039_0036321_1212_2108 244
57 3300049579 Ga0501043_0013183 Ga0501043_0013183_2291_3187 244
58 3300049581 Ga0501047_0031038 Ga0501047_0031038_1525_2421 244
59 3300049582 Ga0501048_0000604 Ga0501048_0000604_1713_2609 244
60 3300049589 Ga0501073_0158873 Ga0501073_0158873_579_1475 244
61 3300049824 Ga0501045_0321240 Ga0501045_0321240_103_999 244
62 3300005288 Ga0065714_10135749 Ga0065714_101357492 245
63 3300049593 Ga0501077_0173320 Ga0501077_0173320_170_1045 247
64 3300046453 Ga0495627_000904 Ga0495627_000904_5108_6028 248
65 iso_pu_bacteria 2808606368 2808884995 248
66 iso_pu_bacteria 2808606370 2808891911 248
67 3300045049 Ga0466959_0006111 Ga0466959_0006111_1044_1937 249
68 iso_pu_bacteria 2643221572 2643874573 249
69 iso_pu_bacteria 2643221669 2644381629 249
70 iso_pu_bacteria 2844849076 2844849515 249
71 iso_pu_bacteria 2895660088 2895663411 249
72 iso_pu_bacteria 2946024296 2946026399 249
73 iso_pu_bacteria 2984592036 2984594220 249
74 3300005435 Ga0070714_100019206 Ga0070714_1000192063 250
75 3300025929 Ga0207664_10028205 Ga0207664_100282052 250
76 3300048926 Ga0496123_0042496 Ga0496123_0042496_1383_2237 250
77 iso_pu_bacteria 2773857763 2774400312 250
78 iso_pu_bacteria 2821268502 2821269300 250
79 iso_pu_bacteria 2862993130 2862994721 250
80 iso_pu_bacteria 2919446982 2919446990 250
81 iso_pu_bacteria 2977251589 2977251884 250
82 iso_pu_bacteria 2977264416 2977265841 250
83 iso_pu_bacteria 8045830549 8045832790 250
84 iso_pu_bacteria 2643221567 2643853271 251
85 iso_pu_bacteria 2643221624 2644137233 251
86 iso_pu_bacteria 2808606371 2808897011 251
87 iso_pu_bacteria 2939598168 2939598645 251
88 iso_pu_bacteria 2945941187 2945942427 251
89 3300031548 Ga0307408_100008090 Ga0307408_1000080905 252
90 3300031548 Ga0307408_100015300 Ga0307408_1000153003 252
91 3300031731 Ga0307405_10008086 Ga0307405_100080862 252
92 3300031731 Ga0307405_10316430 Ga0307405_103164302 252
93 3300031852 Ga0307410_10028789 Ga0307410_100287891 252
94 3300031903 Ga0307407_10067670 Ga0307407_100676702 252
95 3300031911 Ga0307412_10026004 Ga0307412_100260043 252
96 3300031995 Ga0307409_100009783 Ga0307409_1000097835 252
97 3300031995 Ga0307409_100020614 Ga0307409_1000206144 252
98 3300032002 Ga0307416_100368003 Ga0307416_1003680032 252
99 3300032004 Ga0307414_10243531 Ga0307414_102435312 252
100 3300041404 Ga0439436_0000492 Ga0439436_0000492_8347_9213 252
101 3300042002 Ga0439442_001510 Ga0439442_001510_2859_3725 252
102 3300042007 Ga0439449_0004914 Ga0439449_0004914_1730_2596 252
103 3300042015 Ga0439462_0000795 Ga0439462_0000795_1503_2369 252
104 3300042121 Ga0450919_000074 Ga0450919_000074_4664_5530 252
105 3300042122 Ga0450920_000115 Ga0450920_000115_2084_2950 252
106 3300042146 Ga0450907_000273 Ga0450907_000273_9782_10648 252
107 3300042185 Ga0450909_000489 Ga0450909_000489_2795_3661 252
108 3300042531 Ga0450918_000757 Ga0450918_000757_2118_2984 252
109 3300048929 Ga0496126_0004920 Ga0496126_0004920_13082_13978 252
110 3300049568 Ga0501031_0042609 Ga0501031_0042609_622_1491 252
111 3300049569 Ga0501032_0028703 Ga0501032_0028703_1186_2055 252
112 3300049570 Ga0501033_0027122 Ga0501033_0027122_143_1012 252
113 3300049573 Ga0501037_0341909 Ga0501037_0341909_31_900 252
114 3300049575 Ga0501039_0009037 Ga0501039_0009037_5360_6229 252
115 3300049576 Ga0501040_0216092 Ga0501040_0216092_99_968 252
116 3300049577 Ga0501041_0144428 Ga0501041_0144428_582_1451 252
117 3300049578 Ga0501042_0025959 Ga0501042_0025959_2359_3228 252
118 3300049579 Ga0501043_0016245 Ga0501043_0016245_2466_3335 252
119 3300049580 Ga0501046_0128350 Ga0501046_0128350_142_1011 252
120 3300049582 Ga0501048_0003886 Ga0501048_0003886_9994_10863 252
121 3300049587 Ga0501071_0102609 Ga0501071_0102609_521_1390 252
122 3300049588 Ga0501072_0172206 Ga0501072_0172206_794_1663 252
123 3300049590 Ga0501074_0093311 Ga0501074_0093311_1129_1998 252
124 3300049591 Ga0501075_0031534 Ga0501075_0031534_914_1783 252
125 3300049593 Ga0501077_0040085 Ga0501077_0040085_1122_1991 252
126 3300049743 Ga0501081_0043965 Ga0501081_0043965_1702_2571 252
127 3300049822 Ga0501035_0087582 Ga0501035_0087582_977_1846 252
128 3300049824 Ga0501045_0007578 Ga0501045_0007578_721_1590 252
129 3300054114 Ga0501084_0156113 Ga0501084_0156113_914_1783 252
130 3300060353 Ga0501082_0067830 Ga0501082_0067830_720_1589 252
131 iso_pu_bacteria 2721755702 2723642939 252
132 iso_pu_bacteria 2808606365 2808874041 252
133 iso_pu_bacteria 2857720070 2857720974 252
134 iso_pu_bacteria 2906799679 2906801977 252
135 iso_pu_bacteria 2984580707 2984582107 252
136 iso_pu_bacteria 8002811521 8002812241 252
137 3300002773 JGI25152J39213_1000116 JGI25152J39213_100011634 253
138 3300005339 Ga0070660_100257936 Ga0070660_1002579362 253
139 3300005539 Ga0068853_100355139 Ga0068853_1003551392 253
140 3300009148 Ga0105243_10109310 Ga0105243_101093102 253
141 3300011119 Ga0105246_10000417 Ga0105246_1000041717 253
142 3300013307 Ga0157372_10243670 Ga0157372_102436703 253
143 3300025258 Ga0209129_1000028 Ga0209129_1000028373 253
144 3300025294 Ga0209025_1000655 Ga0209025_100065544 253
145 3300025935 Ga0207709_10075959 Ga0207709_100759592 253
146 3300026041 Ga0207639_10279078 Ga0207639_102790782 253
147 3300038443 Ga0395901_0082195 Ga0395901_0082195_1071_1946 253
148 3300042002 Ga0439442_020344 Ga0439442_020344_214_1083 253
149 3300048922 Ga0496119_0017702 Ga0496119_0017702_4016_4879 253
150 3300048923 Ga0496120_0001838 Ga0496120_0001838_22030_22893 253
151 3300048925 Ga0496122_0003004 Ga0496122_0003004_21292_22155 253
152 3300048926 Ga0496123_0009604 Ga0496123_0009604_7068_7931 253
153 3300048927 Ga0496124_0001505 Ga0496124_0001505_22990_23853 253
154 3300048928 Ga0496125_0036711 Ga0496125_0036711_2666_3529 253
155 3300048929 Ga0496126_0014320 Ga0496126_0014320_811_1674 253
156 iso_pu_bacteria 2995726249 2995728819 253
157 iso_pu_bacteria 8055034563 8055035018 253
158 3300006038 Ga0075365_10136076 Ga0075365_101360761 254
159 3300048908 Ga0496105_0003624 Ga0496105_0003624_4604_5470 254
160 3300048908 Ga0496105_0218170 Ga0496105_0218170_266_1132 254
161 3300048925 Ga0496122_0000522 Ga0496122_0000522_33603_34469 254
162 3300048926 Ga0496123_0000251 Ga0496123_0000251_80888_81754 254
163 3300048927 Ga0496124_0002708 Ga0496124_0002708_9323_10189 254
164 3300048928 Ga0496125_0022139 Ga0496125_0022139_2316_3182 254
165 3300048929 Ga0496126_0006319 Ga0496126_0006319_6080_6946 254
166 3300050491 nmdc:mga00v17_142088_c1 nmdc:mga00v17_142088_c1_99_962 254
167 3300050492 nmdc:mga0yw44_57369_c1 nmdc:mga0yw44_57369_c1_855_1721 254
168 3300050494 nmdc:mga06z11_72633_c1 nmdc:mga06z11_72633_c1_388_1254 254
169 iso_pu_bacteria 3002998708 3003004425 254
170 3300000549 LJQas_1002633 LJQas_10026332 255
171 3300005288 Ga0065714_10003505 Ga0065714_100035054 255
172 3300005288 Ga0065714_10081713 Ga0065714_100817132 255
173 3300011119 Ga0105246_10002120 Ga0105246_100021203 255
174 3300020069 Ga0197907_11027450 Ga0197907_110274501 255
175 3300020075 Ga0206349_1061123 Ga0206349_10611231 255
176 3300020076 Ga0206355_1346616 Ga0206355_13466162 255
177 3300020078 Ga0206352_10787769 Ga0206352_107877691 255
178 3300022467 Ga0224712_10073380 Ga0224712_100733802 255
179 3300022467 Ga0224712_10143774 Ga0224712_101437741 255
180 3300025256 Ga0209759_1016238 Ga0209759_10162382 255
181 3300031548 Ga0307408_100007768 Ga0307408_1000077685 255
182 3300031824 Ga0307413_10029619 Ga0307413_100296192 255
183 3300031852 Ga0307410_10000589 Ga0307410_1000058912 255
184 3300031852 Ga0307410_10102726 Ga0307410_101027261 255
185 3300031903 Ga0307407_10011141 Ga0307407_100111412 255
186 3300031911 Ga0307412_10019641 Ga0307412_100196413 255
187 3300031911 Ga0307412_10082189 Ga0307412_100821892 255
188 3300031995 Ga0307409_100167299 Ga0307409_1001672992 255
189 3300041404 Ga0439436_0000197 Ga0439436_0000197_9603_10472 255
190 3300041404 Ga0439436_0005429 Ga0439436_0005429_2097_2966 255
191 3300041406 Ga0439439_0000041 Ga0439439_0000041_5357_6226 255
192 3300041999 Ga0439433_0000004 Ga0439433_0000004_20973_21842 255
193 3300041999 Ga0439433_0007344 Ga0439433_0007344_1087_1956 255
194 3300041999 Ga0439433_0016568 Ga0439433_0016568_296_1165 255
195 3300042002 Ga0439442_000001 Ga0439442_000001_59787_60656 255
196 3300042002 Ga0439442_000132 Ga0439442_000132_1617_2486 255
197 3300042002 Ga0439442_000243 Ga0439442_000243_10410_11279 255
198 3300042006 Ga0439432_000230 Ga0439432_000230_19055_19924 255
199 3300042007 Ga0439449_0000113 Ga0439449_0000113_20514_21383 255
200 3300042007 Ga0439449_0020934 Ga0439449_0020934_1458_2327 255
201 3300042007 Ga0439449_0029346 Ga0439449_0029346_768_1637 255
202 3300042010 Ga0439452_001105 Ga0439452_001105_5539_6408 255
203 3300042014 Ga0439457_001664 Ga0439457_001664_4731_5600 255
204 3300042015 Ga0439462_0000133 Ga0439462_0000133_9475_10344 255
205 3300042015 Ga0439462_0063859 Ga0439462_0063859_58_927 255
206 3300042121 Ga0450919_006008 Ga0450919_006008_384_1253 255
207 3300042122 Ga0450920_000059 Ga0450920_000059_11470_12339 255
208 3300042122 Ga0450920_000063 Ga0450920_000063_8654_9523 255
209 3300042146 Ga0450907_000303 Ga0450907_000303_8790_9659 255
210 3300042146 Ga0450907_001114 Ga0450907_001114_1174_2043 255
211 3300042185 Ga0450909_003105 Ga0450909_003105_154_1023 255
212 3300042435 Ga0439434_0000093 Ga0439434_0000093_8489_9358 255
213 3300042435 Ga0439434_0000143 Ga0439434_0000143_17582_18451 255
214 3300042531 Ga0450918_000276 Ga0450918_000276_3946_4815 255
215 3300042531 Ga0450918_001505 Ga0450918_001505_2394_3263 255
216 3300046472 Ga0495580_0010835 Ga0495580_0010835_2293_3162 255
217 3300046475 Ga0495639_0001561 Ga0495639_0001561_1642_2511 255
218 3300046535 Ga0495586_0001724 Ga0495586_0001724_10423_11292 255
219 3300046674 Ga0495588_0000955 Ga0495588_0000955_8648_9517 255
220 3300046809 Ga0495600_0012855 Ga0495600_0012855_647_1516 255
221 3300047315 Ga0495581_0001814 Ga0495581_0001814_9888_10757 255
222 3300047673 Ga0495593_0010220 Ga0495593_0010220_1961_2830 255
223 3300048905 Ga0496102_0040433 Ga0496102_0040433_518_1387 255
224 3300048906 Ga0496103_0190122 Ga0496103_0190122_330_1199 255
225 3300048920 Ga0496117_0001658 Ga0496117_0001658_3043_3912 255
226 3300048921 Ga0496118_0008548 Ga0496118_0008548_6804_7673 255
227 3300048928 Ga0496125_0000242 Ga0496125_0000242_83504_84418 255
228 3300048929 Ga0496126_0018392 Ga0496126_0018392_5259_6140 255
229 3300048929 Ga0496126_0071680 Ga0496126_0071680_1584_2465 255
230 3300049541 Ga0501325_003656 Ga0501325_003656_202_1071 255
231 3300049570 Ga0501033_0000716 Ga0501033_0000716_11153_12025 255
232 3300049571 Ga0501034_0114773 Ga0501034_0114773_1325_2197 255
233 3300049572 Ga0501036_0202770 Ga0501036_0202770_704_1576 255
234 3300049573 Ga0501037_0027750 Ga0501037_0027750_1820_2692 255
235 3300049580 Ga0501046_0005955 Ga0501046_0005955_2531_3403 255
236 3300049581 Ga0501047_0003331 Ga0501047_0003331_11156_12028 255
237 3300049586 Ga0501070_0394876 Ga0501070_0394876_137_1009 255
238 3300049590 Ga0501074_0212658 Ga0501074_0212658_112_984 255
239 3300049744 Ga0501083_0000053 Ga0501083_0000053_54986_55855 255
240 3300049822 Ga0501035_0007765 Ga0501035_0007765_1775_2647 255
241 3300049823 Ga0501044_0004938 Ga0501044_0004938_11532_12404 255
242 3300059508 Ga0587088_032618 Ga0587088_032618_27_917 255
243 iso_pu_bacteria 2773857759 2774383612 255
244 iso_pu_bacteria 2946080515 2946082817 255
245 iso_pu_bacteria 8004212874 8004213546 255
246 iso_pu_bacteria 8053945823 8053952222 255
247 iso_pu_bacteria 8054107350 8054111062 255
248 3300013105 Ga0157369_10005266 Ga0157369_100052668 256
249 3300031901 Ga0307406_10037405 Ga0307406_100374052 256
250 3300044683 Ga0466965_0000008 Ga0466965_0000008_69567_70436 256
251 3300046543 Ga0495645_0144935 Ga0495645_0144935_62_958 256
252 3300048917 Ga0496114_0054359 Ga0496114_0054359_1908_2816 256
253 3300048917 Ga0496114_0184231 Ga0496114_0184231_234_1130 256
254 3300048929 Ga0496126_0003066 Ga0496126_0003066_120_1013 256
255 3300049571 Ga0501034_0001286 Ga0501034_0001286_32669_33592 256
256 iso_pu_bacteria 2643221553 2643785237 256
257 iso_pu_bacteria 2643221597 2643996528 256
258 iso_pu_bacteria 2643221724 2644679568 256
259 iso_pu_bacteria 2728369380 2730229077 256
260 iso_pu_bacteria 2870628048 2870629671 256
261 iso_pu_bacteria 2919395869 2919396765 256
262 iso_pu_bacteria 2928090899 2928091133 256
263 iso_pu_bacteria 2945968032 2945971256 256
264 iso_pu_bacteria 2946033335 2946034328 256
265 iso_pu_bacteria 2946041624 2946043588 256
266 iso_pu_bacteria 2995726249 2995726689 257
267 iso_pu_bacteria 8004182704 8004185925 257
268 3300013104 Ga0157370_10086619 Ga0157370_100866192 258
269 3300048921 Ga0496118_0064975 Ga0496118_0064975_200_1144 258
270 iso_pu_bacteria 2643221546 2643753083 258
271 iso_pu_bacteria 2747842429 2747951945 258
272 iso_pu_bacteria 2946080515 2946081483 258
273 3300000549 LJQas_1000899 LJQas_10008993 259
274 3300045976 Ga0466967_0276297 Ga0466967_0276297_707_1594 259

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01061

ABC2_membrane

ABC-2 type transporter

37

258

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
6m96-assembly1.cif.gz_B-2 atp-bound conformation of the wzmwzt o antigen abc transporter 0.887 27 240
7k2t-assembly1.cif.gz_B mg2+/atp-bound structure of the full-length wzmwzt o antigen abc transporter in lipid nanodiscs 0.8798 27 250
8dku-assembly1.cif.gz_B cryoem structure of the a. aeolicus wzmwzt transporter bound to the native o antigen 0.8728 27 250
6oih-assembly2.cif.gz_C crystal structure of o-antigen polysaccharide abc-transporter 0.8598 27 240
6oih-assembly1.cif.gz_D crystal structure of o-antigen polysaccharide abc-transporter 0.8358 27 246
ID Description Score Start End Superfamily
af_A0A2R8QMX4_332_689_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.6868 81 243 3.40.1710.10
af_Q9VMM9_322_706_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.6658 81 237 3.40.1710.10
af_Q86P18_394_773_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.6246 78 247 3.40.1710.10
af_A0A2R8QMX4_332_689_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.4605 81 243 3.40.1710.10
af_Q86P18_394_773_3.40.1710.10 Alpha Beta;3-Layer(aba) Sandwich;abc type-2 transporter like fold;abc type-2 transporter like domain 0.4381 78 247 3.40.1710.10
ID Description Score Start End GO Terms
AF-A0A078MQY1-F1-model_v4 Transport permease protein 0.9718 28 252 GO:0005886
GO:0015920
GO:0140359
AF-A0A5B1LNF7-F1-model_v4 ABC transporter 0.9683 22 246 GO:0005886
GO:0015920
GO:0140359
AF-A0A4Q2M5G5-F1-model_v4 Transport permease protein 0.9666 15 257 GO:0005886
GO:0015920
GO:0140359
AF-A0A3L7ITQ4-F1-model_v4 Transport permease protein 0.9658 23 256 GO:0005886
GO:0015920
GO:0140359
AF-A0A7X0GBN8-F1-model_v4 Transport permease protein 0.9609 31 252 GO:0005886
GO:0015920
GO:0140359

Feature Viewer

pLDDT pTM Quality
79.87 0.78 High
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Predicted Structure (AlphaFold2)

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