F379803

General Info

Members Datasets Scaffolds Average Seq Length
274 183 548 331

Family's Representative Sequence

Representative Sequence 3300026035|Ga0207703_10158044|Ga0207703_101580442
Length 371
Sequence MLPWCGPHRLKHRGSRGIADESPMSSARRRCCIPRRTSPDEGIAVTEVTLARAQAGDGEAFRELVAPYRGELLAHCYRMLGSIHDAEDMLQEALLAAWRSIDQFDGRALRAWLYRITTNRCLNYLRGESRRPPTTSVSFQGMGGSRSDEPWWLEPYPDVLLDDTAPGPEARYDARESIALSFVAGLQQLPPRQRTVLVLRDVLGFPAAEVADILDTSTAAVNSALVRARDGLRPGGDPHGVPLPKSPADAAIVDRFVDALEHFDLDRLVALLTQDARLTMPPEPFEFRGPQAIAGFLQELPFWGRDLKVLPTRANNQPAFVYYVPDPRAPIWRAVGIMVLALEGDRIGGITRFGDRGLLARFGIPRTLPRN

Samples

Sample ID Description Type Environment
1 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
2 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
3 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
4 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
5 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
11 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
12 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
13 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
14 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
17 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
18 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
19 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
20 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
24 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
25 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
26 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
29 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
30 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
31 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
32 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
33 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
34 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
35 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
36 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
37 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
38 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
39 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
41 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
42 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
43 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
44 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
45 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
46 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
47 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
48 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
49 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
50 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
51 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
52 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
53 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
54 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
55 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
56 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
57 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
58 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
59 3300024225 Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 Metagenome Rhizosphere
60 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
62 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
63 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
88 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
89 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
90 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
91 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
92 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
93 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
94 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
95 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
96 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
97 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
98 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
99 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
100 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
101 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
102 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
103 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
104 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
105 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
106 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
107 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
108 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
109 3300035111 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 Metagenome Rhizosphere
110 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
111 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
112 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
113 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
114 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
115 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
116 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
117 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
118 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
119 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
120 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
121 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
122 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
123 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
124 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
125 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
126 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
127 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
128 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
129 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
130 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
131 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
132 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
133 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
134 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
135 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
136 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
137 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
138 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
139 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
140 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
141 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
142 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
143 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
144 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
145 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
146 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
147 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
148 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
149 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
150 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
151 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
152 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
153 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
154 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
155 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
156 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
157 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
158 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
159 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
160 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
161 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
162 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
163 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
164 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
165 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
166 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
167 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
168 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
169 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
170 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
171 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
172 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
173 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
174 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
175 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
176 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
177 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
178 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
179 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
180 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
181 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
182 2912715099 Streptomyces sp. Z423-1 Isolate Rhizosphere
183 2995463766 Streptacidiphilus fuscans NEAU-YB345 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.54
Metatranscriptomes 0
Isolates 1.46

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.3
Nodule 0
Rhizoplane 10.58
Rhizosphere 78.1
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207703_10158044 3300026035 Bacteria 1983
2 JGI25407J50210_10003381 3300003373 Bacteria 3810
3 Ga0055535_1000177 3300003761 Bacteria 68502
4 Ga0055529_1000346 3300003763 Bacteria 51499
5 Ga0070682_100220555 3300005337 Bacteria 1349
6 Ga0070668_100176125 3300005347 Bacteria 1744
7 Ga0070709_10009493 3300005434 Bacteria 5369
8 Ga0070709_10009652 3300005434 Bacteria 5329
9 Ga0070709_10023426 3300005434 Bacteria 3625
10 Ga0070709_10073608 3300005434 Bacteria 2212
11 Ga0070709_10129975 3300005434 Bacteria 1718
12 Ga0070709_10229194 3300005434 Bacteria 1328
13 Ga0070714_100089323 3300005435 Bacteria 2697
14 Ga0070714_100168206 3300005435 Bacteria 1988
15 Ga0070714_100306583 3300005435 Bacteria 1481
16 Ga0070714_100395240 3300005435 Bacteria 1306
17 Ga0070713_100025467 3300005436 Bacteria 4626
18 Ga0070713_100045131 3300005436 Bacteria 3610
19 Ga0070713_100124273 3300005436 Bacteria 2267
20 Ga0070713_100196803 3300005436 Bacteria 1818
21 Ga0070710_10004925 3300005437 Bacteria 6320
22 Ga0070711_100006109 3300005439 Bacteria 7241
23 Ga0070711_100424445 3300005439 Bacteria 1084
24 Ga0070708_100107746 3300005445 Bacteria 2558
25 Ga0070708_100139634 3300005445 Bacteria 2246
26 Ga0070663_100006802 3300005455 Bacteria 6912
27 Ga0070663_100051183 3300005455 Bacteria 2941
28 Ga0070663_100061109 3300005455 Bacteria 2712
29 Ga0070678_100106475 3300005456 Bacteria 2185
30 Ga0070706_100012680 3300005467 Bacteria 7797
31 Ga0070706_100017317 3300005467 Bacteria 6650
32 Ga0070706_100041268 3300005467 Bacteria 4260
33 Ga0070706_100078044 3300005467 Bacteria 3066
34 Ga0070706_100158639 3300005467 Bacteria 2112
35 Ga0070707_100019989 3300005468 Bacteria 6313
36 Ga0070707_100040175 3300005468 Bacteria 4475
37 Ga0070698_100139047 3300005471 Bacteria 2381
38 Ga0070698_100239422 3300005471 Bacteria 1748
39 Ga0070698_100257494 3300005471 Bacteria 1677
40 Ga0070699_100063934 3300005518 Bacteria 3191
41 Ga0070699_100087420 3300005518 Bacteria 2721
42 Ga0070684_100201882 3300005535 Bacteria 1811
43 Ga0070686_100054056 3300005544 Bacteria 2567
44 Ga0070665_100227884 3300005548 Bacteria 1863
45 Ga0068855_100034842 3300005563 Bacteria 5999
46 Ga0068854_100059409 3300005578 Bacteria 2763
47 Ga0068856_100019040 3300005614 Bacteria 6661
48 Ga0068856_100069529 3300005614 Bacteria 3482
49 Ga0070702_100022398 3300005615 Bacteria 3339
50 Ga0068852_100100547 3300005616 Bacteria 2609
51 Ga0068863_100015845 3300005841 Bacteria 7231
52 Ga0068858_100023746 3300005842 Bacteria 5712
53 Ga0068858_100026141 3300005842 Bacteria 5428
54 Ga0068860_100079995 3300005843 Bacteria 3108
55 Ga0081455_10102057 3300005937 Bacteria 2301
56 Ga0081538_10000441 3300005981 Bacteria 46694
57 Ga0075365_10105687 3300006038 Bacteria 1931
58 Ga0075365_10111855 3300006038 Bacteria 1877
59 Ga0075365_10182989 3300006038 Bacteria 1465
60 Ga0075368_10009254 3300006042 Bacteria 3540
61 Ga0075363_100022756 3300006048 Bacteria 3171
62 Ga0075363_100054452 3300006048 Bacteria 2140
63 Ga0075363_100123353 3300006048 Bacteria 1448
64 Ga0075364_10023776 3300006051 Bacteria 3882
65 Ga0075364_10057044 3300006051 Bacteria 2557
66 Ga0075364_10057485 3300006051 Bacteria 2548
67 Ga0070715_10000179 3300006163 Bacteria 14766
68 Ga0070716_100003797 3300006173 Bacteria 7163
69 Ga0070716_100019925 3300006173 Bacteria 3514
70 Ga0070716_100095794 3300006173 Bacteria 1807
71 Ga0070712_100004528 3300006175 Bacteria 8583
72 Ga0070712_100074578 3300006175 Bacteria 2437
73 Ga0070712_100326320 3300006175 Bacteria 1249
74 Ga0097621_100012155 3300006237 Bacteria 6372
75 Ga0075370_10168568 3300006353 Bacteria 1286
76 Ga0068871_100059012 3300006358 Bacteria 3125
77 Ga0099795_10028933 3300007788 Bacteria 1890
78 Ga0105240_10037004 3300009093 Bacteria 6273
79 Ga0105245_10024425 3300009098 Bacteria 5307
80 Ga0105247_10006509 3300009101 Bacteria 7233
81 Ga0105247_10027603 3300009101 Bacteria 3432
82 Ga0105247_10094773 3300009101 Bacteria 1900
83 Ga0105241_10249977 3300009174 Bacteria 1503
84 Ga0105237_10047906 3300009545 Bacteria 4298
85 Ga0105238_10069481 3300009551 Bacteria 3522
86 Ga0105238_10081852 3300009551 Bacteria 3218
87 Ga0105239_10058512 3300010375 Bacteria 4229
88 Ga0105239_10246614 3300010375 Bacteria 2005
89 Ga0105246_10075842 3300011119 Bacteria 2381
90 Ga0157373_10035429 3300013100 Bacteria 3583
91 Ga0157374_10012531 3300013296 Bacteria 7381
92 Ga0163162_10059322 3300013306 Bacteria 3858
93 Ga0157372_10177992 3300013307 Bacteria 2462
94 Ga0157375_10039611 3300013308 Bacteria 4537
95 Ga0163163_10015024 3300014325 Bacteria 7139
96 Ga0157379_10057324 3300014968 Bacteria 3481
97 Ga0157376_10007021 3300014969 Bacteria 7993
98 Ga0157376_10037364 3300014969 Bacteria 3941
99 Ga0224572_1008016 3300024225 Bacteria 1947
100 Ga0209258_100146 3300025242 Bacteria 163331
101 Ga0209759_1001457 3300025256 Bacteria 13288
102 Ga0209455_1000059 3300025272 Bacteria 339995
103 Ga0207692_10017448 3300025898 Bacteria 3202
104 Ga0207692_10153143 3300025898 Bacteria 1322
105 Ga0207710_10000023 3300025900 Bacteria 329909
106 Ga0207685_10015950 3300025905 Bacteria 2393
107 Ga0207699_10002262 3300025906 Bacteria 9085
108 Ga0207699_10016377 3300025906 Bacteria 3876
109 Ga0207684_10077774 3300025910 Bacteria 2822
110 Ga0207684_10178652 3300025910 Bacteria 1830
111 Ga0207654_10193810 3300025911 Bacteria 1334
112 Ga0207695_10028265 3300025913 Bacteria 6224
113 Ga0207671_10001844 3300025914 Bacteria 23655
114 Ga0207693_10009176 3300025915 Bacteria 8077
115 Ga0207663_10139267 3300025916 Bacteria 1688
116 Ga0207663_10338847 3300025916 Bacteria 1135
117 Ga0207646_10063078 3300025922 Bacteria 3308
118 Ga0207646_10070092 3300025922 Bacteria 3131
119 Ga0207646_10267151 3300025922 Bacteria 1546
120 Ga0207694_10044130 3300025924 Bacteria 3442
121 Ga0207687_10065666 3300025927 Bacteria 2577
122 Ga0207700_10205952 3300025928 Bacteria 1660
123 Ga0207700_10281079 3300025928 Bacteria 1432
124 Ga0207664_10005914 3300025929 Bacteria 8368
125 Ga0207664_10062889 3300025929 Bacteria 2965
126 Ga0207664_10099977 3300025929 Bacteria 2394
127 Ga0207664_10349259 3300025929 Bacteria 1309
128 Ga0207665_10000195 3300025939 Bacteria 40705
129 Ga0207665_10036016 3300025939 Bacteria 3288
130 Ga0207665_10091099 3300025939 Bacteria 2114
131 Ga0207667_10085921 3300025949 Bacteria 3256
132 Ga0207640_10045239 3300025981 Bacteria 2825
133 Ga0207703_10024986 3300026035 Bacteria 4699
134 Ga0207678_10071806 3300026067 Bacteria 2967
135 Ga0207678_10086392 3300026067 Bacteria 2681
136 Ga0207702_10196518 3300026078 Bacteria 1867
137 Ga0207702_10239142 3300026078 Bacteria 1700
138 Ga0207702_10286775 3300026078 Bacteria 1558
139 Ga0207641_10014625 3300026088 Bacteria 6433
140 Ga0207641_10049356 3300026088 Bacteria 3556
141 Ga0207675_100030039 3300026118 Bacteria 5059
142 Ga0207698_10190892 3300026142 Bacteria 1824
143 Ga0268266_10400173 3300028379 Bacteria 1298
144 Ga0265337_1000064 3300028556 Bacteria 48829
145 Ga0265319_1015114 3300028563 Bacteria 3003
146 Ga0265334_10000366 3300028573 Bacteria 24160
147 Ga0265318_10010596 3300028577 Bacteria 4004
148 Ga0265323_10012254 3300028653 Bacteria 3442
149 Ga0265322_10039248 3300028654 Bacteria 1346
150 Ga0265336_10001316 3300028666 Bacteria 11601
151 Ga0265338_10002634 3300028800 Bacteria 26472
152 Ga0265324_10015891 3300029957 Bacteria 2761
153 Ga0265332_10001004 3300031238 Bacteria 16641
154 Ga0265320_10004097 3300031240 Bacteria 9576
155 Ga0265325_10018491 3300031241 Bacteria 3865
156 Ga0265340_10007882 3300031247 Bacteria 5773
157 Ga0265339_10024019 3300031249 Bacteria 3518
158 Ga0265316_10024566 3300031344 Bacteria 5044
159 Ga0307513_10154610 3300031456 Bacteria 2196
160 Ga0307508_10000238 3300031616 Bacteria 66847
161 Ga0265314_10014441 3300031711 Bacteria 6319
162 Ga0307516_10014144 3300031730 Bacteria 8458
163 Ga0307507_10120132 3300033179 Bacteria 2106
164 Ga0373928_0019843 3300035084 Bacteria 1406
165 Ga0373949_0003519 3300035090 Bacteria 3709
166 Ga0373923_0044955 3300035111 Bacteria 1833
167 Ga0373936_0008208 3300035113 Bacteria 3923
168 Ga0373945_0035846 3300035116 Bacteria 1775
169 Ga0373943_0034142 3300035170 Bacteria 2426
170 Ga0373942_0015747 3300035207 Bacteria 1847
171 Ga0373931_0096268 3300035691 Bacteria 1658
172 Ga0373935_0087342 3300035692 Bacteria 2036
173 Ga0373927_0139928 3300035695 Bacteria 1583
174 Ga0373947_0118010 3300035725 Bacteria 1683
175 Ga0373937_0079856 3300036401 Bacteria 3024
176 Ga0373925_0000001 3300037068 Bacteria 402692
177 Ga0373925_0089119 3300037068 Bacteria 2356
178 Ga0395898_0482015 3300037466 Bacteria 1180
179 Ga0436364_0610738 3300037853 Bacteria 5303
180 Ga0466969_0029135 3300044656 Bacteria 2821
181 Ga0466969_0045625 3300044656 Bacteria 2175
182 Ga0466969_0054703 3300044656 Bacteria 1954
183 Ga0466961_0001329 3300044693 Bacteria 15242
184 Ga0466961_0007382 3300044693 Bacteria 6995
185 Ga0466963_0169321 3300044694 Bacteria 1522
186 Ga0466971_0051195 3300044719 Bacteria 1858
187 Ga0466971_0052796 3300044719 Bacteria 1831
188 Ga0466968_0083559 3300044735 Bacteria 1407
189 Ga0466970_0020810 3300044765 Bacteria 3412
190 Ga0466970_0095129 3300044765 Bacteria 1619
191 Ga0495592_0023980 3300046454 Bacteria 4640
192 Ga0495651_0000705 3300046462 Bacteria 25903
193 Ga0495662_0081353 3300046476 Bacteria 1575
194 Ga0495664_0078675 3300046477 Bacteria 1975
195 Ga0495618_0018637 3300046514 Bacteria 4263
196 Ga0495628_0007795 3300046516 Bacteria 9230
197 Ga0495628_0019718 3300046516 Bacteria 5571
198 Ga0495628_0032588 3300046516 Bacteria 4206
199 Ga0495652_0000719 3300046529 Bacteria 38479
200 Ga0495652_0021974 3300046529 Bacteria 5669
201 Ga0495652_0101438 3300046529 Bacteria 2333
202 Ga0495645_0015935 3300046543 Bacteria 5356
203 Ga0495645_0096071 3300046543 Bacteria 2112
204 Ga0495634_0011808 3300046642 Bacteria 6352
205 Ga0495635_0000982 3300046663 Bacteria 18799
206 Ga0495657_0091216 3300046675 Bacteria 1955
207 Ga0495657_0166778 3300046675 Bacteria 1359
208 Ga0495599_0026921 3300046678 Bacteria 3604
209 Ga0495646_0001439 3300046680 Bacteria 14142
210 Ga0495613_0017079 3300046689 Bacteria 5402
211 Ga0495624_0029798 3300046690 Bacteria 3558
212 Ga0495600_0003075 3300046809 Bacteria 9751
213 Ga0495581_0036518 3300047315 Bacteria 2843
214 Ga0495676_0011116 3300047321 Bacteria 8133
215 Ga0495687_019020 3300047443 Bacteria 3380
216 Ga0495593_0013842 3300047673 Bacteria 4596
217 Ga0495602_0090472 3300048088 Bacteria 2542
218 Ga0495614_0007593 3300048089 Bacteria 4825
219 Ga0496100_0043924 3300048903 Bacteria 2860
220 Ga0496102_0159673 3300048905 Bacteria 2120
221 Ga0496102_0204600 3300048905 Bacteria 1861
222 Ga0496102_0217020 3300048905 Bacteria 1803
223 Ga0496103_0209958 3300048906 Bacteria 1252
224 Ga0496104_0005049 3300048907 Bacteria 11513
225 Ga0496104_0005073 3300048907 Bacteria 11488
226 Ga0496104_0068867 3300048907 Bacteria 3362
227 Ga0496104_0070862 3300048907 Bacteria 3315
228 Ga0496104_0321003 3300048907 Bacteria 1461
229 Ga0496105_0001266 3300048908 Bacteria 17661
230 Ga0496105_0007308 3300048908 Bacteria 8532
231 Ga0496105_0065018 3300048908 Bacteria 3010
232 Ga0496106_0002735 3300048909 Bacteria 13070
233 Ga0496107_0167275 3300048910 Bacteria 1630
234 Ga0496107_0337367 3300048910 Bacteria 1121
235 Ga0496108_0004511 3300048911 Bacteria 11213
236 Ga0496108_0198800 3300048911 Bacteria 1739
237 Ga0496109_0087787 3300048912 Bacteria 2873
238 Ga0496110_0005063 3300048913 Bacteria 10298
239 Ga0496112_0016037 3300048915 Bacteria 7006
240 Ga0496112_0046680 3300048915 Bacteria 4249
241 Ga0496113_0007037 3300048916 Bacteria 7195
242 Ga0496113_0125056 3300048916 Bacteria 2013
243 Ga0496114_0147553 3300048917 Bacteria 2040
244 Ga0496114_0300929 3300048917 Bacteria 1416
245 Ga0496114_0360219 3300048917 Bacteria 1286
246 Ga0496114_0455613 3300048917 Bacteria 1133
247 Ga0496115_0014387 3300048918 Bacteria 5989
248 Ga0496126_0121373 3300048929 Bacteria 2266
249 Ga0496126_0426551 3300048929 Bacteria 1071
250 Ga0501031_0239763 3300049568 Bacteria 1179
251 Ga0501040_0114372 3300049576 Bacteria 1889
252 Ga0501042_0210288 3300049578 Bacteria 1403
253 Ga0501046_0159911 3300049580 Bacteria 1695
254 Ga0501072_0072011 3300049588 Bacteria 2731
255 Ga0501077_0220535 3300049593 Bacteria 1205
256 Ga0501079_0073800 3300049741 Bacteria 2637
257 nmdc:mga03683_36260_c1 3300050489 Bacteria 2005
258 nmdc:mga03n38_55336_c1 3300050490 Bacteria 1787
259 nmdc:mga00v17_22038_c1 3300050491 Bacteria 3672
260 nmdc:mga0n895_65843_c1 3300050512 Bacteria 3587
261 Ga0495601_0000718 3300053077 Bacteria 17778
262 Ga0495601_0007075 3300053077 Bacteria 6574
263 Ga0495601_0028461 3300053077 Bacteria 3461
264 Ga0495601_0234937 3300053077 Bacteria 1197
265 Ga0495612_0000611 3300053078 Bacteria 14366
266 Ga0495612_0039888 3300053078 Bacteria 1911
267 Ga0500604_0043243 3300053151 Bacteria 1368
268 Ga0500616_0000701 3300053153 Bacteria 38992
269 Ga0466962_0000949 3300061719 Bacteria 13141
270 Ga0466962_0107795 3300061719 Bacteria 1340
271 2866613795 2866612099 Bacteria 7543886
272 2866614980 2866612099 Bacteria 7543886
273 2912718198 2912715099 Bacteria 9460473
274 2995466562 2995463766 Bacteria 8577691
275 Ga0207703_10158044
276 JGI25407J50210_10003381
277 Ga0055535_1000177
278 Ga0055529_1000346
279 Ga0070682_100220555
280 Ga0070668_100176125
281 Ga0070709_10009493
282 Ga0070709_10009652
283 Ga0070709_10023426
284 Ga0070709_10073608
285 Ga0070709_10129975
286 Ga0070709_10229194
287 Ga0070714_100089323
288 Ga0070714_100168206
289 Ga0070714_100306583
290 Ga0070714_100395240
291 Ga0070713_100025467
292 Ga0070713_100045131
293 Ga0070713_100124273
294 Ga0070713_100196803
295 Ga0070710_10004925
296 Ga0070711_100006109
297 Ga0070711_100424445
298 Ga0070708_100107746
299 Ga0070708_100139634
300 Ga0070663_100006802
301 Ga0070663_100051183
302 Ga0070663_100061109
303 Ga0070678_100106475
304 Ga0070706_100012680
305 Ga0070706_100017317
306 Ga0070706_100041268
307 Ga0070706_100078044
308 Ga0070706_100158639
309 Ga0070707_100019989
310 Ga0070707_100040175
311 Ga0070698_100139047
312 Ga0070698_100239422
313 Ga0070698_100257494
314 Ga0070699_100063934
315 Ga0070699_100087420
316 Ga0070684_100201882
317 Ga0070686_100054056
318 Ga0070665_100227884
319 Ga0068855_100034842
320 Ga0068854_100059409
321 Ga0068856_100019040
322 Ga0068856_100069529
323 Ga0070702_100022398
324 Ga0068852_100100547
325 Ga0068863_100015845
326 Ga0068858_100023746
327 Ga0068858_100026141
328 Ga0068860_100079995
329 Ga0081455_10102057
330 Ga0081538_10000441
331 Ga0075365_10105687
332 Ga0075365_10111855
333 Ga0075365_10182989
334 Ga0075368_10009254
335 Ga0075363_100022756
336 Ga0075363_100054452
337 Ga0075363_100123353
338 Ga0075364_10023776
339 Ga0075364_10057044
340 Ga0075364_10057485
341 Ga0070715_10000179
342 Ga0070716_100003797
343 Ga0070716_100019925
344 Ga0070716_100095794
345 Ga0070712_100004528
346 Ga0070712_100074578
347 Ga0070712_100326320
348 Ga0097621_100012155
349 Ga0075370_10168568
350 Ga0068871_100059012
351 Ga0099795_10028933
352 Ga0105240_10037004
353 Ga0105245_10024425
354 Ga0105247_10006509
355 Ga0105247_10027603
356 Ga0105247_10094773
357 Ga0105241_10249977
358 Ga0105237_10047906
359 Ga0105238_10069481
360 Ga0105238_10081852
361 Ga0105239_10058512
362 Ga0105239_10246614
363 Ga0105246_10075842
364 Ga0157373_10035429
365 Ga0157374_10012531
366 Ga0163162_10059322
367 Ga0157372_10177992
368 Ga0157375_10039611
369 Ga0163163_10015024
370 Ga0157379_10057324
371 Ga0157376_10007021
372 Ga0157376_10037364
373 Ga0224572_1008016
374 Ga0209258_100146
375 Ga0209759_1001457
376 Ga0209455_1000059
377 Ga0207692_10017448
378 Ga0207692_10153143
379 Ga0207710_10000023
380 Ga0207685_10015950
381 Ga0207699_10002262
382 Ga0207699_10016377
383 Ga0207684_10077774
384 Ga0207684_10178652
385 Ga0207654_10193810
386 Ga0207695_10028265
387 Ga0207671_10001844
388 Ga0207693_10009176
389 Ga0207663_10139267
390 Ga0207663_10338847
391 Ga0207646_10063078
392 Ga0207646_10070092
393 Ga0207646_10267151
394 Ga0207694_10044130
395 Ga0207687_10065666
396 Ga0207700_10205952
397 Ga0207700_10281079
398 Ga0207664_10005914
399 Ga0207664_10062889
400 Ga0207664_10099977
401 Ga0207664_10349259
402 Ga0207665_10000195
403 Ga0207665_10036016
404 Ga0207665_10091099
405 Ga0207667_10085921
406 Ga0207640_10045239
407 Ga0207703_10024986
408 Ga0207678_10071806
409 Ga0207678_10086392
410 Ga0207702_10196518
411 Ga0207702_10239142
412 Ga0207702_10286775
413 Ga0207641_10014625
414 Ga0207641_10049356
415 Ga0207675_100030039
416 Ga0207698_10190892
417 Ga0268266_10400173
418 Ga0265337_1000064
419 Ga0265319_1015114
420 Ga0265334_10000366
421 Ga0265318_10010596
422 Ga0265323_10012254
423 Ga0265322_10039248
424 Ga0265336_10001316
425 Ga0265338_10002634
426 Ga0265324_10015891
427 Ga0265332_10001004
428 Ga0265320_10004097
429 Ga0265325_10018491
430 Ga0265340_10007882
431 Ga0265339_10024019
432 Ga0265316_10024566
433 Ga0307513_10154610
434 Ga0307508_10000238
435 Ga0265314_10014441
436 Ga0307516_10014144
437 Ga0307507_10120132
438 Ga0373928_0019843
439 Ga0373949_0003519
440 Ga0373923_0044955
441 Ga0373936_0008208
442 Ga0373945_0035846
443 Ga0373943_0034142
444 Ga0373942_0015747
445 Ga0373931_0096268
446 Ga0373935_0087342
447 Ga0373927_0139928
448 Ga0373947_0118010
449 Ga0373937_0079856
450 Ga0373925_0000001
451 Ga0373925_0089119
452 Ga0395898_0482015
453 Ga0436364_0610738
454 Ga0466969_0029135
455 Ga0466969_0045625
456 Ga0466969_0054703
457 Ga0466961_0001329
458 Ga0466961_0007382
459 Ga0466963_0169321
460 Ga0466971_0051195
461 Ga0466971_0052796
462 Ga0466968_0083559
463 Ga0466970_0020810
464 Ga0466970_0095129
465 Ga0495592_0023980
466 Ga0495651_0000705
467 Ga0495662_0081353
468 Ga0495664_0078675
469 Ga0495618_0018637
470 Ga0495628_0007795
471 Ga0495628_0019718
472 Ga0495628_0032588
473 Ga0495652_0000719
474 Ga0495652_0021974
475 Ga0495652_0101438
476 Ga0495645_0015935
477 Ga0495645_0096071
478 Ga0495634_0011808
479 Ga0495635_0000982
480 Ga0495657_0091216
481 Ga0495657_0166778
482 Ga0495599_0026921
483 Ga0495646_0001439
484 Ga0495613_0017079
485 Ga0495624_0029798
486 Ga0495600_0003075
487 Ga0495581_0036518
488 Ga0495676_0011116
489 Ga0495687_019020
490 Ga0495593_0013842
491 Ga0495602_0090472
492 Ga0495614_0007593
493 Ga0496100_0043924
494 Ga0496102_0159673
495 Ga0496102_0204600
496 Ga0496102_0217020
497 Ga0496103_0209958
498 Ga0496104_0005049
499 Ga0496104_0005073
500 Ga0496104_0068867
501 Ga0496104_0070862
502 Ga0496104_0321003
503 Ga0496105_0001266
504 Ga0496105_0007308
505 Ga0496105_0065018
506 Ga0496106_0002735
507 Ga0496107_0167275
508 Ga0496107_0337367
509 Ga0496108_0004511
510 Ga0496108_0198800
511 Ga0496109_0087787
512 Ga0496110_0005063
513 Ga0496112_0016037
514 Ga0496112_0046680
515 Ga0496113_0007037
516 Ga0496113_0125056
517 Ga0496114_0147553
518 Ga0496114_0300929
519 Ga0496114_0360219
520 Ga0496114_0455613
521 Ga0496115_0014387
522 Ga0496126_0121373
523 Ga0496126_0426551
524 Ga0501031_0239763
525 Ga0501040_0114372
526 Ga0501042_0210288
527 Ga0501046_0159911
528 Ga0501072_0072011
529 Ga0501077_0220535
530 Ga0501079_0073800
531 nmdc:mga03683_36260_c1
532 nmdc:mga03n38_55336_c1
533 nmdc:mga00v17_22038_c1
534 nmdc:mga0n895_65843_c1
535 Ga0495601_0000718
536 Ga0495601_0007075
537 Ga0495601_0028461
538 Ga0495601_0234937
539 Ga0495612_0000611
540 Ga0495612_0039888
541 Ga0500604_0043243
542 Ga0500616_0000701
543 Ga0466962_0000949
544 Ga0466962_0107795
545 2866613795
546 2866614980
547 2912718198
548 2995466562

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04545

Sigma70_r4

Sigma-70, region 4

185

233

0.97

PF08281

Sigma70_r4_2

Sigma-70, region 4

180

231

0.96

PF04542

Sigma70_r2

Sigma-70 region 2

64

131

0.95

PF02136

NTF2

Nuclear transport factor 2 (NTF2) domain

249

321

0.92

PF12680

SnoaL_2

SnoaL-like domain

253

348

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
2o8x-assembly1.cif.gz_A "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9776 132 180
2o8x-assembly1.cif.gz_B "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" 0.9718 132 179
5fgm-assembly1.cif.gz_A streptomyces coelicolor sigr region 4 0.9714 132 180
3vfz-assembly3.cif.gz_A crystal structure of -35 promoter binding domain of sigd of mycobacterium tuberculosis 0.9605 132 181
3vep-assembly4.cif.gz_H crystal structure of sigd4 in complex with its negative regulator rsda 0.9591 132 181
ID Description Score Start End Superfamily
2o8xA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9776 132 180 1.10.10.10
4cxfA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9766 132 181 1.10.10.10
2o8xB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9718 132 179 1.10.10.10
1or7B02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9643 128 181 1.10.10.10
4lupA00 Mainly Alpha;Orthogonal Bundle;Rna Polymerase Sigma Factor; Chain: A;RNA polymerase sigma factor, region 2, helix turn helix motif 0.9628 10 87 1.10.1740.10
ID Description Score Start End GO Terms
AF-A0A346XYE0-F1-model_v4 RNA polymerase, sigma-24 subunit, ECF subfamily 0.9576 209 320
AF-A0A495X6K7-F1-model_v4 RNA polymerase sigma-70 factor (ECF subfamily) 0.952 216 320
AF-A0A0P9D2K0-F1-model_v4 RNA polymerase subunit sigma-70 0.9512 207 320
AF-D3PUG6-F1-model_v4 RNA polymerase sigma factor 0.9354 10 320 GO:0003677
GO:0006352
GO:0006950
GO:0016987
AF-A0A7V9HSQ8-F1-model_v4 Nuclear transport factor 2 family protein 0.9312 200 320

Map