F378604

General Info

Members Datasets Scaffolds Average Seq Length
272 192 544 218

Family's Representative Sequence

Representative Sequence 3300046648|Ga0495611_0218910|Ga0495611_0218910_36_806
Length 256
Sequence VGPTPTISTSVVTVISISLTLLSSTCAQHALNGVKLSTVTPRRTPKLDRRLVADTALRLLDEVGLEGLTLRAIAHELDVKAPALYWHFKDKQALLDEMATEMMRRMAADTAAPPSDDWRDTFRTRMHGLRAHLLRYRDGAKVYSGTIFTDTSYADGMEENLRVLVGAGFTPRAAARAWLTAYSFTIGYVIEEQAMGPDPFAGTEGYDVEARAQRLAAYPLSAEAGREMFQDHERGFDEGIGAIIAGVEATLLGRGA

Samples

Sample ID Description Type Environment
1 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
2 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
7 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
8 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
9 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
10 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
11 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
12 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
13 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
14 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
15 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
16 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
17 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
18 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
19 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
22 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
24 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
25 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
26 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
27 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
28 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
29 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
30 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
31 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
32 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
33 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
34 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
35 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
36 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
37 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
38 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
39 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
40 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
41 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
42 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
43 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
44 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
45 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
46 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
47 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
48 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
49 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
50 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
51 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
52 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
53 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
54 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
55 3300042138 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0624L_E14_072516_1379 Metagenome Rhizosphere
56 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
57 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
58 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
59 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
60 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
61 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
62 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
63 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
64 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
65 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
66 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
67 3300046452 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 rhizosphere Metagenome Rhizosphere
68 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
69 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
70 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
71 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
72 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
73 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
74 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
75 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
76 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
77 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
78 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
79 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
80 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
81 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
82 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
83 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
84 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
85 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
86 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
87 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
88 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
89 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
90 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
91 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
92 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
93 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
94 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
95 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
96 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
97 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
98 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
99 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
100 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
101 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
102 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
103 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
104 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
105 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
106 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
107 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
108 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
109 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
110 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
111 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
112 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
113 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
114 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
115 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
116 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
117 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
118 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
119 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
120 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
121 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
122 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
123 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
124 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
125 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
126 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
127 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
129 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
130 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
131 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
132 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
133 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
134 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
135 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
136 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
139 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
140 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
141 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
142 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
143 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
145 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
146 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
147 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
148 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
149 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
150 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
151 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
152 3300053099 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 endosphere Metagenome Endosphere
153 3300053100 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 endosphere Metagenome Endosphere
154 3300053107 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 endosphere Metagenome Endosphere
155 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
156 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
157 3300053126 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 endosphere Metagenome Endosphere
158 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
159 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
160 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
161 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
162 3300053160 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 endosphere Metagenome Endosphere
163 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
164 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere
165 3300053732 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 endosphere Metagenome Endosphere
166 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
167 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
168 2643221678 Streptomyces sp. Root1310 Isolate Unclassified
169 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
170 2784746763 Streptomyces ossamyceticus SAI-001 Isolate Unclassified
171 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
172 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
173 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
174 2818991463 Streptomyces argenteolus 3259 Isolate Rhizosphere
175 2862281513 Streptomyces sp. Act143 Isolate Rhizosphere
176 2873151551 Streptomyces silaceus ACCC40021 Isolate Rhizosphere
177 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
178 2912723979 Streptomyces sp. NEAU-sy36 Isolate Rhizosphere
179 2919468124 Streptomyces sp. 3330 Isolate Rhizosphere
180 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
181 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
182 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
183 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
184 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
185 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
186 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
187 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
188 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
189 8008558824 Streptomyces scabiei NRRL B-2795 Isolate Nodule
190 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
191 8056667051 Streptomyces sichuanensis SCA3-4 Isolate Rhizosphere
192 8056829672 Streptomyces barringtoniae JA03 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 90.07
Metatranscriptomes 0.74
Isolates 9.19

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.09
Nodule 0.37
Rhizoplane 0.37
Rhizosphere 75
Stem 0
Stem Tuber 0
Unclassified 0.74

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495611_0218910 3300046648 Bacteria 886
2 JGI24739J22299_10014197 3300001989 Bacteria 2899
3 rootH2_10239396 3300003320 Bacteria 1362
4 rootL2_10012270 3300003322 Bacteria 1680
5 rootH1_10022551 3300003323 Bacteria 4122
6 Ga0006562J51391_1091811 3300003578 Bacteria 2737
7 Ga0006562J51391_1091812 3300003578 Bacteria 2350
8 Ga0068853_100020460 3300005539 Bacteria 5503
9 Ga0068853_100691791 3300005539 Bacteria 972
10 Ga0070665_100066606 3300005548 Bacteria 3613
11 Ga0068856_100393693 3300005614 Bacteria 1405
12 Ga0081455_10038972 3300005937 Bacteria 4204
13 Ga0105243_10629577 3300009148 Bacteria 1037
14 Ga0105239_10220729 3300010375 Bacteria 2126
15 Ga0105246_10001407 3300011119 Bacteria 14232
16 Ga0157372_10030071 3300013307 Bacteria 5938
17 Ga0157375_10950409 3300013308 Bacteria 1001
18 Ga0157376_10238847 3300014969 Bacteria 1692
19 Ga0183367_1002 3300015688 Bacteria 1101531
20 Ga0209758_1002071 3300025297 Bacteria 21410
21 Ga0207647_10013030 3300025904 Bacteria 5777
22 Ga0207709_10462112 3300025935 Bacteria 983
23 Ga0207639_10554398 3300026041 Bacteria 1055
24 Ga0268266_10076093 3300028379 Bacteria 2917
25 Ga0307517_10000344 3300028786 Bacteria 80274
26 Ga0307517_10002842 3300028786 Bacteria 27511
27 Ga0307515_10000497 3300028794 Bacteria 94190
28 Ga0307515_10416391 3300028794 Bacteria 965
29 Ga0265338_10365373 3300028800 Unclassified 1034
30 Ga0307511_10000238 3300030521 Bacteria 56455
31 Ga0307512_10011586 3300030522 Bacteria 8348
32 Ga0307512_10015539 3300030522 Bacteria 7051
33 Ga0307512_10059885 3300030522 Bacteria 2950
34 Ga0265328_10009914 3300031239 Bacteria 3853
35 Ga0265325_10102609 3300031241 Bacteria 1398
36 Ga0265340_10081241 3300031247 Unclassified 1526
37 Ga0265340_10307533 3300031247 Bacteria 702
38 Ga0265339_10001835 3300031249 Bacteria 15592
39 Ga0307513_10025427 3300031456 Bacteria 6859
40 Ga0307513_10096776 3300031456 Bacteria 2988
41 Ga0307509_10005412 3300031507 Bacteria 17771
42 Ga0265313_10028442 3300031595 Bacteria 2905
43 Ga0307508_10003468 3300031616 Bacteria 15946
44 Ga0307508_10020110 3300031616 Bacteria 6064
45 Ga0307508_10050086 3300031616 Bacteria 3717
46 Ga0307508_10090227 3300031616 Bacteria 2651
47 Ga0307514_10006271 3300031649 Bacteria 10408
48 Ga0307514_10061065 3300031649 Bacteria 2872
49 Ga0265342_10016605 3300031712 Bacteria 4805
50 Ga0265342_10024351 3300031712 Bacteria 3822
51 Ga0307516_10018858 3300031730 Bacteria 7161
52 Ga0307516_10041908 3300031730 Bacteria 4545
53 Ga0307518_10030397 3300031838 Bacteria 3912
54 Ga0307518_10053512 3300031838 Bacteria 2933
55 Ga0307406_10132543 3300031901 Bacteria 1752
56 Ga0307407_10167782 3300031903 Bacteria 1443
57 Ga0307414_10444119 3300032004 Bacteria 1136
58 Ga0307507_10041241 3300033179 Bacteria 4623
59 Ga0307507_10106571 3300033179 Bacteria 2314
60 Ga0307507_10165074 3300033179 Bacteria 1625
61 Ga0307510_10004320 3300033180 Bacteria 16724
62 Ga0307510_10007211 3300033180 Bacteria 13244
63 Ga0307510_10015697 3300033180 Bacteria 8958
64 Ga0307510_10036432 3300033180 Bacteria 5474
65 Ga0395900_0020139 3300037418 Bacteria 6806
66 Ga0395898_0011177 3300037466 Bacteria 9348
67 Ga0395901_0025107 3300038443 Bacteria 6118
68 Ga0439436_0009981 3300041404 Bacteria 2903
69 Ga0439436_0011114 3300041404 Bacteria 2736
70 Ga0439439_0001872 3300041406 Bacteria 4342
71 Ga0451837_1810492 3300041494 Bacteria 1650
72 Ga0451853_0041397 3300041512 Bacteria 2372
73 Ga0439433_0001405 3300041999 Bacteria 4954
74 Ga0439433_0026967 3300041999 Bacteria 1301
75 Ga0439449_0014625 3300042007 Bacteria 2949
76 Ga0439457_001638 3300042014 Bacteria 6670
77 Ga0439457_009488 3300042014 Bacteria 2263
78 Ga0450903_018740 3300042138 Bacteria 1077
79 Ga0466972_0017177 3300044658 Bacteria 3619
80 Ga0466972_0269220 3300044658 Bacteria 796
81 Ga0466965_0005213 3300044683 Bacteria 5841
82 Ga0466965_0175535 3300044683 Bacteria 1129
83 Ga0466966_0097396 3300044684 Bacteria 1821
84 Ga0466963_0000203 3300044694 Bacteria 25139
85 Ga0466963_0006533 3300044694 Bacteria 6906
86 Ga0466964_0004545 3300044706 Bacteria 5128
87 Ga0466964_0067255 3300044706 Bacteria 1506
88 Ga0466971_0004320 3300044719 Bacteria 6123
89 Ga0466970_0000313 3300044765 Bacteria 23646
90 Ga0466970_0000893 3300044765 Bacteria 14400
91 Ga0466957_0066208 3300044842 Bacteria 2226
92 Ga0466957_0401790 3300044842 Bacteria 937
93 Ga0466959_0282671 3300045049 Bacteria 1138
94 Ga0466958_0033453 3300045836 Bacteria 3062
95 Ga0466967_0011864 3300045976 Bacteria 6630
96 Ga0466967_0231535 3300045976 Bacteria 1759
97 Ga0495617_021391 3300046452 Bacteria 2184
98 Ga0495592_0037407 3300046454 Bacteria 3654
99 Ga0495603_0120679 3300046455 Bacteria 1527
100 Ga0495629_0003806 3300046459 Bacteria 11370
101 Ga0495629_0008794 3300046459 Bacteria 7425
102 Ga0495629_0024764 3300046459 Bacteria 4271
103 Ga0495629_0030727 3300046459 Bacteria 3806
104 Ga0495651_0116214 3300046462 Bacteria 1971
105 Ga0495580_0341139 3300046472 Bacteria 1016
106 Ga0495582_0209202 3300046473 Bacteria 1115
107 Ga0495605_0013654 3300046474 Bacteria 4468
108 Ga0495662_0323436 3300046476 Bacteria 758
109 Ga0495664_0051178 3300046477 Bacteria 2453
110 Ga0495664_0053766 3300046477 Bacteria 2394
111 Ga0495585_0025000 3300046492 Bacteria 3423
112 Ga0495594_0001847 3300046499 Bacteria 11017
113 Ga0495594_0002126 3300046499 Bacteria 10311
114 Ga0495594_0025917 3300046499 Bacteria 3153
115 Ga0495607_0208240 3300046501 Bacteria 964
116 Ga0495606_0048502 3300046507 Bacteria 2792
117 Ga0495610_0016302 3300046512 Bacteria 4285
118 Ga0495616_0165601 3300046513 Bacteria 991
119 Ga0495620_0020526 3300046515 Bacteria 3225
120 Ga0495620_0025774 3300046515 Bacteria 2776
121 Ga0495620_0192141 3300046515 Bacteria 787
122 Ga0495628_0038753 3300046516 Bacteria 3813
123 Ga0495630_0028444 3300046517 Bacteria 4153
124 Ga0495631_0012828 3300046518 Bacteria 4082
125 Ga0495643_0025094 3300046522 Bacteria 3376
126 Ga0495648_0241523 3300046524 Bacteria 877
127 Ga0495666_0055647 3300046526 Bacteria 1895
128 Ga0495665_0402202 3300046531 Bacteria 694
129 Ga0495640_0065740 3300046533 Bacteria 2448
130 Ga0495587_0001425 3300046536 Bacteria 15904
131 Ga0495645_0091398 3300046543 Bacteria 2174
132 Ga0495622_0003172 3300046557 Bacteria 7784
133 Ga0495622_0008370 3300046557 Bacteria 4788
134 Ga0495633_0033428 3300046558 Bacteria 2480
135 Ga0495668_0131360 3300046616 Bacteria 1370
136 Ga0495634_0002605 3300046642 Bacteria 14837
137 Ga0495634_0019470 3300046642 Bacteria 4822
138 Ga0495611_0095485 3300046648 Bacteria 1376
139 Ga0495625_0013459 3300046660 Bacteria 6574
140 Ga0495625_0054585 3300046660 Bacteria 2852
141 Ga0495661_0217617 3300046665 Bacteria 991
142 Ga0495588_0005042 3300046674 Bacteria 5862
143 Ga0495588_0026389 3300046674 Bacteria 2899
144 Ga0495657_0004044 3300046675 Bacteria 11759
145 Ga0495657_0018252 3300046675 Bacteria 5082
146 Ga0495623_0408457 3300046679 Bacteria 729
147 Ga0495658_0020216 3300046683 Bacteria 3491
148 Ga0495613_0002876 3300046689 Bacteria 12889
149 Ga0495613_0257136 3300046689 Bacteria 1217
150 Ga0495624_0020053 3300046690 Bacteria 4454
151 Ga0495670_0118846 3300046691 Bacteria 1372
152 Ga0495671_0030569 3300046692 Bacteria 2757
153 Ga0495649_0178241 3300046694 Bacteria 1109
154 Ga0495589_0035367 3300046794 Bacteria 2504
155 Ga0495589_0178157 3300046794 Bacteria 1009
156 Ga0495600_0021500 3300046809 Bacteria 4132
157 Ga0495600_0191615 3300046809 Bacteria 1314
158 Ga0495660_0181614 3300046810 Bacteria 1017
159 Ga0495581_0005898 3300047315 Bacteria 7105
160 Ga0495581_0228613 3300047315 Bacteria 1088
161 Ga0495604_0000264 3300047317 Bacteria 46714
162 Ga0495604_0357263 3300047317 Bacteria 970
163 Ga0495636_0021182 3300047318 Bacteria 2624
164 Ga0495674_0053286 3300047319 Bacteria 3557
165 Ga0495676_0010792 3300047321 Bacteria 8265
166 Ga0495676_0015203 3300047321 Bacteria 6862
167 Ga0495676_0160108 3300047321 Bacteria 1593
168 Ga0495683_0032900 3300047323 Bacteria 2640
169 Ga0495683_0101459 3300047323 Bacteria 1383
170 Ga0495687_002653 3300047443 Bacteria 13957
171 Ga0495687_024529 3300047443 Bacteria 2865
172 Ga0495687_079152 3300047443 Bacteria 1292
173 Ga0495675_0145169 3300047444 Bacteria 1469
174 Ga0495685_005001 3300047447 Bacteria 4312
175 Ga0495681_0000442 3300047470 Bacteria 31718
176 Ga0495681_0002238 3300047470 Bacteria 13911
177 Ga0495686_0056153 3300047472 Bacteria 2461
178 Ga0495686_0093655 3300047472 Bacteria 1821
179 Ga0495614_0003037 3300048089 Bacteria 7478
180 Ga0495614_0009860 3300048089 Bacteria 4215
181 Ga0495614_0016367 3300048089 Bacteria 3227
182 Ga0495626_0014144 3300048091 Bacteria 4127
183 Ga0496108_0791233 3300048911 Bacteria 819
184 Ga0495678_049963 3300049459 Bacteria 1623
185 Ga0501032_0020452 3300049569 Bacteria 4610
186 Ga0501032_0061635 3300049569 Bacteria 2514
187 Ga0501032_0194205 3300049569 Bacteria 1326
188 Ga0501033_0002508 3300049570 Bacteria 15545
189 Ga0501033_0010280 3300049570 Bacteria 7179
190 Ga0501033_0030420 3300049570 Bacteria 4058
191 Ga0501034_0005870 3300049571 Bacteria 13348
192 Ga0501034_0006132 3300049571 Bacteria 12968
193 Ga0501036_0001918 3300049572 Bacteria 16154
194 Ga0501036_0057405 3300049572 Bacteria 3297
195 Ga0501036_0515879 3300049572 Bacteria 994
196 Ga0501037_0023058 3300049573 Bacteria 4603
197 Ga0501037_0042135 3300049573 Bacteria 3355
198 Ga0501038_0004234 3300049574 Bacteria 13336
199 Ga0501039_0592660 3300049575 Bacteria 869
200 Ga0501042_0113359 3300049578 Bacteria 1952
201 Ga0501042_0248191 3300049578 Bacteria 1284
202 Ga0501043_0001216 3300049579 Bacteria 22691
203 Ga0501043_0011217 3300049579 Bacteria 7019
204 Ga0501046_0004849 3300049580 Bacteria 12120
205 Ga0501046_0043311 3300049580 Bacteria 3584
206 Ga0501046_0268915 3300049580 Bacteria 1251
207 Ga0501047_0001008 3300049581 Bacteria 28428
208 Ga0501047_0007723 3300049581 Bacteria 10127
209 Ga0501047_0057533 3300049581 Bacteria 3759
210 Ga0501048_0003379 3300049582 Bacteria 12128
211 Ga0501048_0040425 3300049582 Bacteria 3342
212 Ga0501068_0259988 3300049584 Bacteria 1107
213 Ga0501070_0000919 3300049586 Bacteria 26675
214 Ga0501070_0062349 3300049586 Bacteria 3089
215 Ga0501074_0005014 3300049590 Bacteria 9501
216 Ga0501080_0572555 3300049742 Bacteria 1005
217 Ga0501035_0007328 3300049822 Bacteria 10312
218 Ga0501035_0050113 3300049822 Bacteria 3743
219 Ga0501035_0087981 3300049822 Bacteria 2737
220 Ga0501035_0145825 3300049822 Bacteria 2056
221 Ga0501035_0523865 3300049822 Bacteria 973
222 Ga0501044_0008136 3300049823 Bacteria 11508
223 Ga0501044_0036536 3300049823 Bacteria 5140
224 Ga0501044_0201893 3300049823 Bacteria 1946
225 nmdc:mga07m45_340708_c1 3300050496 Bacteria 871
226 Ga0500610_0187297 3300053079 Bacteria 1008
227 Ga0495655_0024978 3300053083 Bacteria 1393
228 Ga0500578_0146929 3300053086 Bacteria 1470
229 Ga0500644_0001822 3300053088 Bacteria 5509
230 Ga0500566_0001797 3300053094 Bacteria 12600
231 Ga0500650_0174403 3300053098 Bacteria 987
232 Ga0500654_099556 3300053099 Bacteria 1248
233 Ga0500660_021607 3300053100 Bacteria 3422
234 Ga0500560_005485 3300053107 Bacteria 2813
235 Ga0500569_035245 3300053109 Bacteria 1433
236 Ga0500594_0101539 3300053118 Bacteria 886
237 Ga0500621_037596 3300053126 Bacteria 1946
238 Ga0500628_005234 3300053129 Bacteria 2161
239 Ga0500652_079764 3300053131 Bacteria 1362
240 Ga0500577_0000132 3300053142 Bacteria 17972
241 Ga0500600_0177691 3300053149 Bacteria 1027
242 Ga0500633_0009642 3300053160 Bacteria 2549
243 Ga0500634_0062433 3300053161 Bacteria 1973
244 Ga0500611_011047 3300053727 Bacteria 1481
245 Ga0500656_003231 3300053732 Bacteria 1514
246 Ga0500587_006989 3300053739 Bacteria 1480
247 Ga0466962_0000820 3300061719 Bacteria 13990
248 2644439534 2643221678 Bacteria 9540101
249 2784589913 2784132148 Bacteria 8627943
250 2785341674 2784746763 Bacteria 9783172
251 2786672190 2786546132 Bacteria 10419719
252 2808913111 2808606375 Bacteria 9466072
253 2811844907 2808606982 Bacteria 7791042
254 2819695081 2818991463 Bacteria 7948711
255 2862287209 2862281513 Bacteria 9621493
256 2873154536 2873151551 Bacteria 8625867
257 2877679584 2877676314 Bacteria 9512378
258 2912730623 2912723979 Bacteria 8557534
259 2919470419 2919468124 Bacteria 9133025
260 2954678467 2954673503 Bacteria 9685905
261 2954685688 2954682443 Bacteria 9862841
262 2954714790 2954711539 Bacteria 10867210
263 2954724735 2954721474 Bacteria 10456478
264 2954737082 2954731030 Bacteria 10243860
265 2954743659 2954740390 Bacteria 10229294
266 2954755935 2954749733 Bacteria 10366972
267 2954762612 2954759201 Bacteria 9358192
268 3006399112 3006393351 Bacteria 6615579
269 8008566758 8008558824 Bacteria 10610750
270 8023630267 8023623736 Bacteria 8593882
271 8056670489 8056667051 Bacteria 6953971
272 8056837434 8056829672 Bacteria 9045328
273 Ga0495611_0218910
274 JGI24739J22299_10014197
275 rootH2_10239396
276 rootL2_10012270
277 rootH1_10022551
278 Ga0006562J51391_1091811
279 Ga0006562J51391_1091812
280 Ga0068853_100020460
281 Ga0068853_100691791
282 Ga0070665_100066606
283 Ga0068856_100393693
284 Ga0081455_10038972
285 Ga0105243_10629577
286 Ga0105239_10220729
287 Ga0105246_10001407
288 Ga0157372_10030071
289 Ga0157375_10950409
290 Ga0157376_10238847
291 Ga0183367_1002
292 Ga0209758_1002071
293 Ga0207647_10013030
294 Ga0207709_10462112
295 Ga0207639_10554398
296 Ga0268266_10076093
297 Ga0307517_10000344
298 Ga0307517_10002842
299 Ga0307515_10000497
300 Ga0307515_10416391
301 Ga0265338_10365373
302 Ga0307511_10000238
303 Ga0307512_10011586
304 Ga0307512_10015539
305 Ga0307512_10059885
306 Ga0265328_10009914
307 Ga0265325_10102609
308 Ga0265340_10081241
309 Ga0265340_10307533
310 Ga0265339_10001835
311 Ga0307513_10025427
312 Ga0307513_10096776
313 Ga0307509_10005412
314 Ga0265313_10028442
315 Ga0307508_10003468
316 Ga0307508_10020110
317 Ga0307508_10050086
318 Ga0307508_10090227
319 Ga0307514_10006271
320 Ga0307514_10061065
321 Ga0265342_10016605
322 Ga0265342_10024351
323 Ga0307516_10018858
324 Ga0307516_10041908
325 Ga0307518_10030397
326 Ga0307518_10053512
327 Ga0307406_10132543
328 Ga0307407_10167782
329 Ga0307414_10444119
330 Ga0307507_10041241
331 Ga0307507_10106571
332 Ga0307507_10165074
333 Ga0307510_10004320
334 Ga0307510_10007211
335 Ga0307510_10015697
336 Ga0307510_10036432
337 Ga0395900_0020139
338 Ga0395898_0011177
339 Ga0395901_0025107
340 Ga0439436_0009981
341 Ga0439436_0011114
342 Ga0439439_0001872
343 Ga0451837_1810492
344 Ga0451853_0041397
345 Ga0439433_0001405
346 Ga0439433_0026967
347 Ga0439449_0014625
348 Ga0439457_001638
349 Ga0439457_009488
350 Ga0450903_018740
351 Ga0466972_0017177
352 Ga0466972_0269220
353 Ga0466965_0005213
354 Ga0466965_0175535
355 Ga0466966_0097396
356 Ga0466963_0000203
357 Ga0466963_0006533
358 Ga0466964_0004545
359 Ga0466964_0067255
360 Ga0466971_0004320
361 Ga0466970_0000313
362 Ga0466970_0000893
363 Ga0466957_0066208
364 Ga0466957_0401790
365 Ga0466959_0282671
366 Ga0466958_0033453
367 Ga0466967_0011864
368 Ga0466967_0231535
369 Ga0495617_021391
370 Ga0495592_0037407
371 Ga0495603_0120679
372 Ga0495629_0003806
373 Ga0495629_0008794
374 Ga0495629_0024764
375 Ga0495629_0030727
376 Ga0495651_0116214
377 Ga0495580_0341139
378 Ga0495582_0209202
379 Ga0495605_0013654
380 Ga0495662_0323436
381 Ga0495664_0051178
382 Ga0495664_0053766
383 Ga0495585_0025000
384 Ga0495594_0001847
385 Ga0495594_0002126
386 Ga0495594_0025917
387 Ga0495607_0208240
388 Ga0495606_0048502
389 Ga0495610_0016302
390 Ga0495616_0165601
391 Ga0495620_0020526
392 Ga0495620_0025774
393 Ga0495620_0192141
394 Ga0495628_0038753
395 Ga0495630_0028444
396 Ga0495631_0012828
397 Ga0495643_0025094
398 Ga0495648_0241523
399 Ga0495666_0055647
400 Ga0495665_0402202
401 Ga0495640_0065740
402 Ga0495587_0001425
403 Ga0495645_0091398
404 Ga0495622_0003172
405 Ga0495622_0008370
406 Ga0495633_0033428
407 Ga0495668_0131360
408 Ga0495634_0002605
409 Ga0495634_0019470
410 Ga0495611_0095485
411 Ga0495625_0013459
412 Ga0495625_0054585
413 Ga0495661_0217617
414 Ga0495588_0005042
415 Ga0495588_0026389
416 Ga0495657_0004044
417 Ga0495657_0018252
418 Ga0495623_0408457
419 Ga0495658_0020216
420 Ga0495613_0002876
421 Ga0495613_0257136
422 Ga0495624_0020053
423 Ga0495670_0118846
424 Ga0495671_0030569
425 Ga0495649_0178241
426 Ga0495589_0035367
427 Ga0495589_0178157
428 Ga0495600_0021500
429 Ga0495600_0191615
430 Ga0495660_0181614
431 Ga0495581_0005898
432 Ga0495581_0228613
433 Ga0495604_0000264
434 Ga0495604_0357263
435 Ga0495636_0021182
436 Ga0495674_0053286
437 Ga0495676_0010792
438 Ga0495676_0015203
439 Ga0495676_0160108
440 Ga0495683_0032900
441 Ga0495683_0101459
442 Ga0495687_002653
443 Ga0495687_024529
444 Ga0495687_079152
445 Ga0495675_0145169
446 Ga0495685_005001
447 Ga0495681_0000442
448 Ga0495681_0002238
449 Ga0495686_0056153
450 Ga0495686_0093655
451 Ga0495614_0003037
452 Ga0495614_0009860
453 Ga0495614_0016367
454 Ga0495626_0014144
455 Ga0496108_0791233
456 Ga0495678_049963
457 Ga0501032_0020452
458 Ga0501032_0061635
459 Ga0501032_0194205
460 Ga0501033_0002508
461 Ga0501033_0010280
462 Ga0501033_0030420
463 Ga0501034_0005870
464 Ga0501034_0006132
465 Ga0501036_0001918
466 Ga0501036_0057405
467 Ga0501036_0515879
468 Ga0501037_0023058
469 Ga0501037_0042135
470 Ga0501038_0004234
471 Ga0501039_0592660
472 Ga0501042_0113359
473 Ga0501042_0248191
474 Ga0501043_0001216
475 Ga0501043_0011217
476 Ga0501046_0004849
477 Ga0501046_0043311
478 Ga0501046_0268915
479 Ga0501047_0001008
480 Ga0501047_0007723
481 Ga0501047_0057533
482 Ga0501048_0003379
483 Ga0501048_0040425
484 Ga0501068_0259988
485 Ga0501070_0000919
486 Ga0501070_0062349
487 Ga0501074_0005014
488 Ga0501080_0572555
489 Ga0501035_0007328
490 Ga0501035_0050113
491 Ga0501035_0087981
492 Ga0501035_0145825
493 Ga0501035_0523865
494 Ga0501044_0008136
495 Ga0501044_0036536
496 Ga0501044_0201893
497 nmdc:mga07m45_340708_c1
498 Ga0500610_0187297
499 Ga0495655_0024978
500 Ga0500578_0146929
501 Ga0500644_0001822
502 Ga0500566_0001797
503 Ga0500650_0174403
504 Ga0500654_099556
505 Ga0500660_021607
506 Ga0500560_005485
507 Ga0500569_035245
508 Ga0500594_0101539
509 Ga0500621_037596
510 Ga0500628_005234
511 Ga0500652_079764
512 Ga0500577_0000132
513 Ga0500600_0177691
514 Ga0500633_0009642
515 Ga0500634_0062433
516 Ga0500611_011047
517 Ga0500656_003231
518 Ga0500587_006989
519 Ga0466962_0000820
520 2644439534
521 2784589913
522 2785341674
523 2786672190
524 2808913111
525 2811844907
526 2819695081
527 2862287209
528 2873154536
529 2877679584
530 2912730623
531 2919470419
532 2954678467
533 2954685688
534 2954714790
535 2954724735
536 2954737082
537 2954743659
538 2954755935
539 2954762612
540 3006399112
541 8008566758
542 8023630267
543 8056670489
544 8056837434

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00440

TetR_N

Bacterial regulatory proteins, tetR family

52

98

0.97

PF02909

TetR_C_1

Tetracyclin repressor-like, C-terminal domain

110

251

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4d5c-assembly1.cif.gz_A-2 tetracycline repressor class j, apo form 0.9011 7 214
2ns7-assembly2.cif.gz_D how an in vitro selected peptide mimics the antibiotic tetracycline to induce tet repressor 0.8934 9 212
4b3a-assembly1.cif.gz_A-2 tetracycline repressor class d mutant h100a in complex with tetracycline 0.8933 7 212
2tct-assembly1.cif.gz_A the complex formed between tet repressor and tetracycline-mg2+ reveals mechanism of antibiotic resistance 0.893 7 212
4d5c-assembly1.cif.gz_A-2 tetracycline repressor class j, apo form 0.8923 7 214
ID Description Score Start End Superfamily
2y30B01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9534 11 63 1.10.10.60
3fiwB01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9506 10 57 1.10.10.60
1qpiA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.948 9 67 1.10.10.60
5ojxA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9436 11 58 1.10.10.60
3fiwA01 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9399 9 57 1.10.10.60
ID Description Score Start End GO Terms
AF-A0A0T1TND8-F1-model_v4 TetR family transcriptional regulator 0.9898 1 216 GO:0000976
GO:0003700
GO:0045892
GO:0046677
GO:0046872
AF-A0A1A9C7E9-F1-model_v4 Transcriptional regulator, TetR family 0.9815 15 216 GO:0000976
GO:0003700
GO:0045892
GO:0046677
GO:0046872
AF-A0A2K8PTA0-F1-model_v4 Tetracycline repressor protein class A 0.9768 16 216 GO:0000976
GO:0003700
GO:0045892
GO:0046677
GO:0046872
AF-A0A7W2HSE1-F1-model_v4 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein 0.9757 1 216 GO:0000976
GO:0003700
GO:0045892
GO:0046677
GO:0046872
AF-A0A1A9C7E9-F1-model_v4 Transcriptional regulator, TetR family 0.9715 15 216 GO:0000976
GO:0003700
GO:0045892
GO:0046677
GO:0046872

Map