F378580

General Info

Members Datasets Scaffolds Average Seq Length
272 200 544 240

Family's Representative Sequence

Representative Sequence 3300046471|Ga0495650_0044230|Ga0495650_0044230_887_1756
Length 271
Sequence VHRLRLPLRCALRSNDKDGRNMATLSTPSRSLPSTRGPAPSINWFAWAAPQRFYPVAGRIALVSAPTDAQQGEAYRIIFVHVPAAWMSMVIYVAMALWAGIGLAFNARLAAMFARALAPTGALMTFLALWTGALWGKPTWGAWWVWDARLTSELILLFLYIGFLSLHAAIDDVRRADRAAAVLALVGVVNVPIIYFSVKWWNTLHQGASVSLAKAPSMATPMLLGMLVMALAFWAYCNAVSLARLRVILLERERQAAWVRQVVEHDGKVAA

Samples

Sample ID Description Type Environment
1 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
2 3300002774 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA Metagenome Endosphere
3 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
4 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
8 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
11 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
12 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
13 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
14 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
15 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
16 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
17 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
18 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
19 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
20 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
21 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
22 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
23 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
24 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
25 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
26 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
27 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
28 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
29 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
30 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
31 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
32 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
33 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
34 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
35 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
36 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
37 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
38 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
39 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
40 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
41 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
42 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
43 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
44 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
45 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
46 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
47 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
48 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
49 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
50 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
51 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
52 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
53 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
54 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
55 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
56 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
57 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
58 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
59 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
60 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
61 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
62 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
63 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
64 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
65 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
66 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
67 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
68 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300027360 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes) (version 2) Metagenome Rhizosphere
93 3300027378 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes) (version 2) Metagenome Rhizosphere
94 3300027462 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes) (version 2) Metagenome Rhizosphere
95 3300027471 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes) (version 2) Metagenome Rhizosphere
96 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
97 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
98 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
99 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
101 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
102 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
103 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
104 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
105 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
106 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
107 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
108 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
109 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
110 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
111 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
112 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
113 3300035086 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 Metagenome Rhizosphere
114 3300035088 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_4 Metagenome Rhizosphere
115 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
116 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
117 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
118 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
119 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
120 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
121 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
122 3300035241 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_4 Metagenome Rhizosphere
123 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
124 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
125 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
126 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
127 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
128 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
129 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
130 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
131 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
132 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
133 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
134 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
135 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
136 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
137 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
138 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
139 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
140 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
141 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
142 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
143 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
144 3300042006 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z080117_5437 Metagenome Rhizosphere
145 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
146 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
147 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
148 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
149 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
150 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
151 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
152 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
153 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
154 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
155 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
156 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
157 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
158 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
159 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
160 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
161 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
162 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
163 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
164 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
165 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
166 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
167 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
168 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
169 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
170 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
171 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
172 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
173 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
174 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
175 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
176 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
177 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
178 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
179 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
180 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
181 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
182 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
183 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
184 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
185 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
186 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
187 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
188 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
189 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
190 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
191 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
192 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
193 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
194 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
195 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
196 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
197 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
198 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
199 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
200 2643221654 Rhizobacter sp. Root404 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.63
Metatranscriptomes 0
Isolates 0.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.31
Nodule 0
Rhizoplane 0
Rhizosphere 93.01
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0495650_0044230 3300046471 Bacteria 1884
2 JGI25150J39212_1008962 3300002774 Bacteria 1932
3 JGI25153J46596_10002019 3300003215 Bacteria 11979
4 JGI25153J46596_10003795 3300003215 Bacteria 8336
5 Ga0065715_10417873 3300005293 Bacteria 861
6 Ga0070676_10037363 3300005328 Bacteria 2801
7 Ga0070690_100070932 3300005330 Bacteria 2263
8 Ga0070670_100022983 3300005331 Bacteria 5365
9 Ga0070670_100055400 3300005331 Bacteria 3404
10 Ga0070670_100330104 3300005331 Bacteria 1337
11 Ga0070680_100339183 3300005336 Bacteria 1277
12 Ga0068868_100312163 3300005338 Bacteria 1338
13 Ga0070660_100022722 3300005339 Bacteria 4643
14 Ga0070689_100032413 3300005340 Bacteria 3973
15 Ga0070661_100250251 3300005344 Bacteria 1367
16 Ga0070668_100257067 3300005347 Bacteria 1451
17 Ga0070669_100153022 3300005353 Bacteria 1787
18 Ga0070675_100014500 3300005354 Bacteria 6216
19 Ga0070675_100113658 3300005354 Bacteria 2293
20 Ga0070675_100201822 3300005354 Bacteria 1726
21 Ga0070671_100088081 3300005355 Bacteria 2598
22 Ga0070671_100121868 3300005355 Bacteria 2195
23 Ga0070674_100098690 3300005356 Bacteria 2123
24 Ga0070674_100129801 3300005356 Bacteria 1877
25 Ga0070673_100003960 3300005364 Bacteria 9309
26 Ga0070694_100030648 3300005444 Bacteria 3521
27 Ga0070694_100269215 3300005444 Bacteria 1295
28 Ga0070678_100202803 3300005456 Bacteria 1638
29 Ga0070681_10641453 3300005458 Bacteria 977
30 Ga0070685_10103093 3300005466 Bacteria 1745
31 Ga0070707_100738386 3300005468 Bacteria 948
32 Ga0070679_100028752 3300005530 Bacteria 5483
33 Ga0070697_100125016 3300005536 Bacteria 2154
34 Ga0070672_100026659 3300005543 Bacteria 4304
35 Ga0070686_100364850 3300005544 Bacteria 1089
36 Ga0070696_100003510 3300005546 Bacteria 10425
37 Ga0070696_100281599 3300005546 Bacteria 1268
38 Ga0070693_100020712 3300005547 Bacteria 3474
39 Ga0070704_100018308 3300005549 Bacteria 4476
40 Ga0068855_100011470 3300005563 Bacteria 10710
41 Ga0070664_100014875 3300005564 Bacteria 6349
42 Ga0068856_100011578 3300005614 Bacteria 8556
43 Ga0068852_100071460 3300005616 Bacteria 3047
44 Ga0068859_100522769 3300005617 Bacteria 1282
45 Ga0068864_100005581 3300005618 Bacteria 10316
46 Ga0068864_100241723 3300005618 Bacteria 1673
47 Ga0068864_100512384 3300005618 Bacteria 1155
48 Ga0068851_10131815 3300005834 Bacteria 1352
49 Ga0068863_100025398 3300005841 Bacteria 5648
50 Ga0075365_10044221 3300006038 Bacteria 2917
51 Ga0097621_100118860 3300006237 Bacteria 2240
52 Ga0068871_100430177 3300006358 Bacteria 1180
53 Ga0075428_100211377 3300006844 Bacteria 2096
54 Ga0075430_100055267 3300006846 Bacteria 3338
55 Ga0075430_100106193 3300006846 Bacteria 2343
56 Ga0075430_100290859 3300006846 Bacteria 1351
57 Ga0075431_100154746 3300006847 Bacteria 2359
58 Ga0075431_100346858 3300006847 Bacteria 1493
59 Ga0075433_10035738 3300006852 Bacteria 4276
60 Ga0075434_100090767 3300006871 Bacteria 3056
61 Ga0075429_100212992 3300006880 Bacteria 1692
62 Ga0075429_100295005 3300006880 Bacteria 1419
63 Ga0075436_100001314 3300006914 Bacteria 16895
64 Ga0075436_100084777 3300006914 Bacteria 2199
65 Ga0097620_100522772 3300006931 Bacteria 1282
66 Ga0075435_100005501 3300007076 Bacteria 8853
67 Ga0099794_10006686 3300007265 Bacteria 4684
68 Ga0105240_10000866 3300009093 Bacteria 54504
69 Ga0105240_10098824 3300009093 Bacteria 3553
70 Ga0114129_10209599 3300009147 Bacteria 2635
71 Ga0114129_10859388 3300009147 Bacteria 1153
72 Ga0105248_10159194 3300009177 Bacteria 2547
73 Ga0105237_10004184 3300009545 Bacteria 16808
74 Ga0105238_10012978 3300009551 Bacteria 8410
75 Ga0105238_10125820 3300009551 Bacteria 2542
76 Ga0105239_10007271 3300010375 Bacteria 12720
77 Ga0157374_10041148 3300013296 Bacteria 4257
78 Ga0157378_10053248 3300013297 Bacteria 3603
79 Ga0163162_10927810 3300013306 Bacteria 983
80 Ga0157375_10031723 3300013308 Bacteria 5002
81 Ga0157375_10680779 3300013308 Bacteria 1183
82 Ga0157376_10007341 3300014969 Bacteria 7859
83 Ga0163161_10225415 3300017792 Bacteria 1453
84 Ga0207425_1001592 3300025245 Bacteria 9205
85 Ga0209129_1000207 3300025258 Bacteria 68885
86 Ga0209564_1000196 3300025295 Bacteria 141368
87 Ga0209758_1000181 3300025297 Bacteria 140847
88 Ga0209758_1000207 3300025297 Bacteria 129217
89 Ga0207682_10035216 3300025893 Bacteria 2021
90 Ga0207645_10007081 3300025907 Bacteria 7973
91 Ga0207643_10031558 3300025908 Bacteria 2954
92 Ga0207695_10006729 3300025913 Bacteria 14837
93 Ga0207695_10030753 3300025913 Bacteria 5907
94 Ga0207671_10011753 3300025914 Bacteria 7091
95 Ga0207660_10608807 3300025917 Bacteria 890
96 Ga0207657_10095978 3300025919 Bacteria 2467
97 Ga0207649_10206919 3300025920 Bacteria 1390
98 Ga0207694_10065800 3300025924 Bacteria 2827
99 Ga0207650_10004555 3300025925 Bacteria 9477
100 Ga0207650_10045453 3300025925 Bacteria 3230
101 Ga0207659_10086025 3300025926 Bacteria 2337
102 Ga0207644_10077349 3300025931 Bacteria 2450
103 Ga0207644_10130053 3300025931 Bacteria 1926
104 Ga0207670_10052221 3300025936 Bacteria 2748
105 Ga0207670_10058594 3300025936 Bacteria 2617
106 Ga0207691_10603280 3300025940 Bacteria 929
107 Ga0207679_10037594 3300025945 Bacteria 3442
108 Ga0207651_10001179 3300025960 Bacteria 11722
109 Ga0207658_10467428 3300025986 Bacteria 1119
110 Ga0207703_10092466 3300026035 Bacteria 2546
111 Ga0207702_10045131 3300026078 Bacteria 3708
112 Ga0207641_10007825 3300026088 Bacteria 8872
113 Ga0207648_10031176 3300026089 Bacteria 4713
114 Ga0207676_10004669 3300026095 Bacteria 9706
115 Ga0207675_100037117 3300026118 Bacteria 4545
116 Ga0207683_10201377 3300026121 Bacteria 1810
117 Ga0209969_1004950 3300027360 Bacteria 1863
118 Ga0209981_1001442 3300027378 Bacteria 3006
119 Ga0209981_1011511 3300027378 Bacteria 1220
120 Ga0210000_1000892 3300027462 Bacteria 4151
121 Ga0209995_1005377 3300027471 Bacteria 2056
122 Ga0209588_1007998 3300027671 Bacteria 3128
123 Ga0209974_10002099 3300027876 Bacteria 7295
124 Ga0209974_10032506 3300027876 Bacteria 1729
125 Ga0268265_10312362 3300028380 Bacteria 1420
126 Ga0268264_10366996 3300028381 Bacteria 1375
127 Ga0265330_10051224 3300031235 Bacteria 1810
128 Ga0265332_10000077 3300031238 Bacteria 84198
129 Ga0265331_10101988 3300031250 Bacteria 1320
130 Ga0265327_10025141 3300031251 Bacteria 3479
131 Ga0265327_10029523 3300031251 Bacteria 3118
132 Ga0307408_100124645 3300031548 Bacteria 2001
133 Ga0316575_10041143 3300031665 Bacteria 1827
134 Ga0316579_10011142 3300031691 Bacteria 3816
135 Ga0265314_10006003 3300031711 Bacteria 10830
136 Ga0307516_10015492 3300031730 Bacteria 8019
137 Ga0307410_10067605 3300031852 Bacteria 2466
138 Ga0307410_10077133 3300031852 Bacteria 2328
139 Ga0307409_100188629 3300031995 Bacteria 1833
140 Ga0307411_10044484 3300032005 Bacteria 2849
141 Ga0316583_10004248 3300032133 Bacteria 5104
142 Ga0373934_0004516 3300035086 Bacteria 5142
143 Ga0373940_0009221 3300035088 Bacteria 2289
144 Ga0373951_0006774 3300035091 Bacteria 2615
145 Ga0373939_0042416 3300035114 Bacteria 1376
146 Ga0373954_0000024 3300035118 Bacteria 57545
147 Ga0373956_0000614 3300035119 Bacteria 14605
148 Ga0373960_0006122 3300035121 Bacteria 2811
149 Ga0373946_0048186 3300035171 Bacteria 1773
150 Ga0373955_0073593 3300035172 Bacteria 1915
151 Ga0373961_0019567 3300035241 Bacteria 1780
152 Ga0373962_0003599 3300035242 Bacteria 3724
153 Ga0316574_0033470 3300035398 Bacteria 3128
154 Ga0373931_0001562 3300035691 Bacteria 9891
155 Ga0373931_0001793 3300035691 Bacteria 9329
156 Ga0373935_0032653 3300035692 Bacteria 3234
157 Ga0373935_0467190 3300035692 Bacteria 913
158 Ga0373927_0010847 3300035695 Bacteria 6070
159 Ga0373933_0004666 3300035724 Bacteria 7506
160 Ga0373933_0060983 3300035724 Bacteria 2275
161 Ga0373937_0000676 3300036401 Bacteria 29686
162 Ga0373937_0003473 3300036401 Bacteria 13241
163 Ga0373937_0141595 3300036401 Bacteria 2250
164 Ga0373937_0243315 3300036401 Bacteria 1695
165 Ga0316582_0001711 3300036647 Bacteria 9862
166 Ga0373925_0017043 3300037068 Bacteria 5258
167 Ga0395900_0031886 3300037418 Bacteria 5417
168 Ga0395900_0083674 3300037418 Bacteria 3278
169 Ga0395898_0032743 3300037466 Bacteria 5190
170 Ga0395905_0242625 3300037471 Bacteria 1683
171 Ga0395905_0277586 3300037471 Bacteria 1561
172 Ga0395901_0033649 3300038443 Bacteria 5292
173 Ga0400484_14345 3300038725 Bacteria 2781
174 Ga0400486_05683 3300038742 Bacteria 1179
175 Ga0400483_054126 3300039062 Bacteria 2690
176 Ga0400483_125877 3300039062 Bacteria 2613
177 Ga0400483_208043 3300039062 Bacteria 2012
178 Ga0400483_261571 3300039062 Bacteria 3061
179 Ga0436363_0034901 3300039450 Bacteria 1119
180 Ga0439439_0033068 3300041406 Bacteria 1322
181 Ga0439465_0003574 3300041413 Bacteria 5069
182 Ga0439433_0002698 3300041999 Bacteria 3774
183 Ga0439442_001738 3300042002 Bacteria 4273
184 Ga0439432_005685 3300042006 Bacteria 4481
185 Ga0439449_0002221 3300042007 Bacteria 7637
186 Ga0439452_001773 3300042010 Bacteria 8412
187 Ga0439457_027984 3300042014 Bacteria 1247
188 Ga0439462_0013909 3300042015 Bacteria 2065
189 Ga0439434_0001080 3300042435 Bacteria 7907
190 Ga0451577_0014904 3300042876 Bacteria 7241
191 Ga0451577_0055566 3300042876 Bacteria 3532
192 Ga0451577_0426934 3300042876 Bacteria 1203
193 Ga0466965_0026973 3300044683 Bacteria 2786
194 Ga0453684_0042190 3300044712 Bacteria 6154
195 Ga0453684_0270359 3300044712 Bacteria 1943
196 Ga0453684_0310314 3300044712 Bacteria 1790
197 Ga0453684_0334447 3300044712 Bacteria 1712
198 Ga0453684_0487299 3300044712 Bacteria 1367
199 Ga0453684_0939758 3300044712 Bacteria 923
200 Ga0451576_0136573 3300045051 Bacteria 2557
201 Ga0451576_0141244 3300045051 Bacteria 2511
202 Ga0451576_0181543 3300045051 Bacteria 2197
203 Ga0451576_0227946 3300045051 Bacteria 1945
204 Ga0451576_0229244 3300045051 Bacteria 1940
205 Ga0451576_0394411 3300045051 Bacteria 1451
206 Ga0451576_0420638 3300045051 Bacteria 1402
207 Ga0495592_0028761 3300046454 Bacteria 4206
208 Ga0495592_0075975 3300046454 Bacteria 2438
209 Ga0495651_0015881 3300046462 Bacteria 5829
210 Ga0495650_0003259 3300046471 Bacteria 12040
211 Ga0495608_0238396 3300046511 Bacteria 1137
212 Ga0495628_0065429 3300046516 Bacteria 2843
213 Ga0495630_0052817 3300046517 Bacteria 3043
214 Ga0495642_0054237 3300046528 Bacteria 1653
215 Ga0495652_0017650 3300046529 Bacteria 6368
216 Ga0495645_0000482 3300046543 Bacteria 27603
217 Ga0495645_0246615 3300046543 Bacteria 1189
218 Ga0495667_0011500 3300046559 Bacteria 5991
219 Ga0495667_0052657 3300046559 Bacteria 2681
220 Ga0495657_0100937 3300046675 Bacteria 1839
221 Ga0495599_0003719 3300046678 Bacteria 8935
222 Ga0495599_0093911 3300046678 Bacteria 1871
223 Ga0495670_0263157 3300046691 Bacteria 921
224 Ga0495680_0097716 3300047322 Bacteria 2192
225 Ga0495680_0385275 3300047322 Bacteria 970
226 Ga0496121_0273824 3300048924 Bacteria 1159
227 Ga0501034_0049282 3300049571 Bacteria 4250
228 Ga0501036_0285916 3300049572 Bacteria 1380
229 Ga0501041_0110994 3300049577 Bacteria 1701
230 Ga0501042_0018688 3300049578 Bacteria 4803
231 Ga0501043_0095025 3300049579 Bacteria 2343
232 Ga0501046_0096950 3300049580 Bacteria 2265
233 Ga0501048_0025886 3300049582 Bacteria 4274
234 Ga0501071_0092706 3300049587 Bacteria 2220
235 Ga0501071_0127886 3300049587 Bacteria 1886
236 Ga0501071_0166644 3300049587 Bacteria 1649
237 Ga0501071_0313985 3300049587 Bacteria 1189
238 Ga0501072_0003306 3300049588 Bacteria 12127
239 Ga0501072_0026112 3300049588 Bacteria 4551
240 Ga0501073_0152405 3300049589 Bacteria 1602
241 Ga0501075_0039033 3300049591 Bacteria 3552
242 Ga0501076_0066261 3300049592 Bacteria 2882
243 Ga0501076_0073018 3300049592 Bacteria 2746
244 Ga0501077_0024197 3300049593 Bacteria 3855
245 Ga0501079_0007438 3300049741 Bacteria 8288
246 Ga0501080_0012279 3300049742 Bacteria 7847
247 Ga0501080_0158230 3300049742 Bacteria 2092
248 Ga0501081_0101025 3300049743 Bacteria 2039
249 Ga0501083_0101428 3300049744 Bacteria 1898
250 Ga0501035_0108134 3300049822 Bacteria 2438
251 Ga0501035_0698029 3300049822 Bacteria 819
252 Ga0501044_0130960 3300049823 Bacteria 2502
253 Ga0501045_0015142 3300049824 Bacteria 5474
254 Ga0501045_0055772 3300049824 Bacteria 2890
255 Ga0501045_0238982 3300049824 Bacteria 1352
256 nmdc:mga05p37_349981_c1 3300050507 Bacteria 1740
257 nmdc:mga09592_18430_c1 3300050508 Bacteria 5726
258 nmdc:mga09592_19255_c1 3300050508 Bacteria 5604
259 nmdc:mga09592_445069_c1 3300050508 Bacteria 1118
260 nmdc:mga0qj67_378351_c1 3300050509 Bacteria 1144
261 nmdc:mga06r32_178457_c1 3300050510 Bacteria 2109
262 nmdc:mga06r32_308261_c1 3300050510 Bacteria 1569
263 nmdc:mga08y16_2334_c1 3300050511 Bacteria 19459
264 nmdc:mga0n895_1031_c1 3300050512 Bacteria 20268
265 nmdc:mga08x19_100017_c1 3300050514 Bacteria 1923
266 nmdc:mga0a205_40956_c1 3300050515 Bacteria 4461
267 Ga0495601_0013153 3300053077 Bacteria 4975
268 Ga0501084_0044971 3300054114 Bacteria 3697
269 Ga0501084_0372385 3300054114 Bacteria 1207
270 Ga0501082_0102234 3300060353 Bacteria 2479
271 Ga0530510_0000655 3300061734 Bacteria 22362
272 2644301526 2643221654 Bacteria 5273570
273 Ga0495650_0044230
274 JGI25150J39212_1008962
275 JGI25153J46596_10002019
276 JGI25153J46596_10003795
277 Ga0065715_10417873
278 Ga0070676_10037363
279 Ga0070690_100070932
280 Ga0070670_100022983
281 Ga0070670_100055400
282 Ga0070670_100330104
283 Ga0070680_100339183
284 Ga0068868_100312163
285 Ga0070660_100022722
286 Ga0070689_100032413
287 Ga0070661_100250251
288 Ga0070668_100257067
289 Ga0070669_100153022
290 Ga0070675_100014500
291 Ga0070675_100113658
292 Ga0070675_100201822
293 Ga0070671_100088081
294 Ga0070671_100121868
295 Ga0070674_100098690
296 Ga0070674_100129801
297 Ga0070673_100003960
298 Ga0070694_100030648
299 Ga0070694_100269215
300 Ga0070678_100202803
301 Ga0070681_10641453
302 Ga0070685_10103093
303 Ga0070707_100738386
304 Ga0070679_100028752
305 Ga0070697_100125016
306 Ga0070672_100026659
307 Ga0070686_100364850
308 Ga0070696_100003510
309 Ga0070696_100281599
310 Ga0070693_100020712
311 Ga0070704_100018308
312 Ga0068855_100011470
313 Ga0070664_100014875
314 Ga0068856_100011578
315 Ga0068852_100071460
316 Ga0068859_100522769
317 Ga0068864_100005581
318 Ga0068864_100241723
319 Ga0068864_100512384
320 Ga0068851_10131815
321 Ga0068863_100025398
322 Ga0075365_10044221
323 Ga0097621_100118860
324 Ga0068871_100430177
325 Ga0075428_100211377
326 Ga0075430_100055267
327 Ga0075430_100106193
328 Ga0075430_100290859
329 Ga0075431_100154746
330 Ga0075431_100346858
331 Ga0075433_10035738
332 Ga0075434_100090767
333 Ga0075429_100212992
334 Ga0075429_100295005
335 Ga0075436_100001314
336 Ga0075436_100084777
337 Ga0097620_100522772
338 Ga0075435_100005501
339 Ga0099794_10006686
340 Ga0105240_10000866
341 Ga0105240_10098824
342 Ga0114129_10209599
343 Ga0114129_10859388
344 Ga0105248_10159194
345 Ga0105237_10004184
346 Ga0105238_10012978
347 Ga0105238_10125820
348 Ga0105239_10007271
349 Ga0157374_10041148
350 Ga0157378_10053248
351 Ga0163162_10927810
352 Ga0157375_10031723
353 Ga0157375_10680779
354 Ga0157376_10007341
355 Ga0163161_10225415
356 Ga0207425_1001592
357 Ga0209129_1000207
358 Ga0209564_1000196
359 Ga0209758_1000181
360 Ga0209758_1000207
361 Ga0207682_10035216
362 Ga0207645_10007081
363 Ga0207643_10031558
364 Ga0207695_10006729
365 Ga0207695_10030753
366 Ga0207671_10011753
367 Ga0207660_10608807
368 Ga0207657_10095978
369 Ga0207649_10206919
370 Ga0207694_10065800
371 Ga0207650_10004555
372 Ga0207650_10045453
373 Ga0207659_10086025
374 Ga0207644_10077349
375 Ga0207644_10130053
376 Ga0207670_10052221
377 Ga0207670_10058594
378 Ga0207691_10603280
379 Ga0207679_10037594
380 Ga0207651_10001179
381 Ga0207658_10467428
382 Ga0207703_10092466
383 Ga0207702_10045131
384 Ga0207641_10007825
385 Ga0207648_10031176
386 Ga0207676_10004669
387 Ga0207675_100037117
388 Ga0207683_10201377
389 Ga0209969_1004950
390 Ga0209981_1001442
391 Ga0209981_1011511
392 Ga0210000_1000892
393 Ga0209995_1005377
394 Ga0209588_1007998
395 Ga0209974_10002099
396 Ga0209974_10032506
397 Ga0268265_10312362
398 Ga0268264_10366996
399 Ga0265330_10051224
400 Ga0265332_10000077
401 Ga0265331_10101988
402 Ga0265327_10025141
403 Ga0265327_10029523
404 Ga0307408_100124645
405 Ga0316575_10041143
406 Ga0316579_10011142
407 Ga0265314_10006003
408 Ga0307516_10015492
409 Ga0307410_10067605
410 Ga0307410_10077133
411 Ga0307409_100188629
412 Ga0307411_10044484
413 Ga0316583_10004248
414 Ga0373934_0004516
415 Ga0373940_0009221
416 Ga0373951_0006774
417 Ga0373939_0042416
418 Ga0373954_0000024
419 Ga0373956_0000614
420 Ga0373960_0006122
421 Ga0373946_0048186
422 Ga0373955_0073593
423 Ga0373961_0019567
424 Ga0373962_0003599
425 Ga0316574_0033470
426 Ga0373931_0001562
427 Ga0373931_0001793
428 Ga0373935_0032653
429 Ga0373935_0467190
430 Ga0373927_0010847
431 Ga0373933_0004666
432 Ga0373933_0060983
433 Ga0373937_0000676
434 Ga0373937_0003473
435 Ga0373937_0141595
436 Ga0373937_0243315
437 Ga0316582_0001711
438 Ga0373925_0017043
439 Ga0395900_0031886
440 Ga0395900_0083674
441 Ga0395898_0032743
442 Ga0395905_0242625
443 Ga0395905_0277586
444 Ga0395901_0033649
445 Ga0400484_14345
446 Ga0400486_05683
447 Ga0400483_054126
448 Ga0400483_125877
449 Ga0400483_208043
450 Ga0400483_261571
451 Ga0436363_0034901
452 Ga0439439_0033068
453 Ga0439465_0003574
454 Ga0439433_0002698
455 Ga0439442_001738
456 Ga0439432_005685
457 Ga0439449_0002221
458 Ga0439452_001773
459 Ga0439457_027984
460 Ga0439462_0013909
461 Ga0439434_0001080
462 Ga0451577_0014904
463 Ga0451577_0055566
464 Ga0451577_0426934
465 Ga0466965_0026973
466 Ga0453684_0042190
467 Ga0453684_0270359
468 Ga0453684_0310314
469 Ga0453684_0334447
470 Ga0453684_0487299
471 Ga0453684_0939758
472 Ga0451576_0136573
473 Ga0451576_0141244
474 Ga0451576_0181543
475 Ga0451576_0227946
476 Ga0451576_0229244
477 Ga0451576_0394411
478 Ga0451576_0420638
479 Ga0495592_0028761
480 Ga0495592_0075975
481 Ga0495651_0015881
482 Ga0495650_0003259
483 Ga0495608_0238396
484 Ga0495628_0065429
485 Ga0495630_0052817
486 Ga0495642_0054237
487 Ga0495652_0017650
488 Ga0495645_0000482
489 Ga0495645_0246615
490 Ga0495667_0011500
491 Ga0495667_0052657
492 Ga0495657_0100937
493 Ga0495599_0003719
494 Ga0495599_0093911
495 Ga0495670_0263157
496 Ga0495680_0097716
497 Ga0495680_0385275
498 Ga0496121_0273824
499 Ga0501034_0049282
500 Ga0501036_0285916
501 Ga0501041_0110994
502 Ga0501042_0018688
503 Ga0501043_0095025
504 Ga0501046_0096950
505 Ga0501048_0025886
506 Ga0501071_0092706
507 Ga0501071_0127886
508 Ga0501071_0166644
509 Ga0501071_0313985
510 Ga0501072_0003306
511 Ga0501072_0026112
512 Ga0501073_0152405
513 Ga0501075_0039033
514 Ga0501076_0066261
515 Ga0501076_0073018
516 Ga0501077_0024197
517 Ga0501079_0007438
518 Ga0501080_0012279
519 Ga0501080_0158230
520 Ga0501081_0101025
521 Ga0501083_0101428
522 Ga0501035_0108134
523 Ga0501035_0698029
524 Ga0501044_0130960
525 Ga0501045_0015142
526 Ga0501045_0055772
527 Ga0501045_0238982
528 nmdc:mga05p37_349981_c1
529 nmdc:mga09592_18430_c1
530 nmdc:mga09592_19255_c1
531 nmdc:mga09592_445069_c1
532 nmdc:mga0qj67_378351_c1
533 nmdc:mga06r32_178457_c1
534 nmdc:mga06r32_308261_c1
535 nmdc:mga08y16_2334_c1
536 nmdc:mga0n895_1031_c1
537 nmdc:mga08x19_100017_c1
538 nmdc:mga0a205_40956_c1
539 Ga0495601_0013153
540 Ga0501084_0044971
541 Ga0501084_0372385
542 Ga0501082_0102234
543 Ga0530510_0000655
544 2644301526

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01578

Cytochrom_C_asm

Cytochrome C assembly protein

39

205

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
7f02-assembly1.cif.gz_C cytochrome c-type biogenesis protein ccmabcd from e. coli 0.8492 18 247
7f02-assembly1.cif.gz_C cytochrome c-type biogenesis protein ccmabcd from e. coli 0.832 18 247
6n1l-assembly1.cif.gz_A the complement inhibitory domain of b. burgdorferi bbk32. 0.654 68 186
3t6g-assembly2.cif.gz_D structure of the complex between nsp3 (shep1) and p130cas 0.6149 73 193
3t6g-assembly2.cif.gz_D structure of the complex between nsp3 (shep1) and p130cas 0.5767 73 193
ID Description Score Start End Superfamily
af_Q9H1K6_144_260_1.20.120.230 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Alpha-catenin/vinculin-like 0.6274 70 180 1.20.120.230
af_Q9Z0U4_602_889_1.20.1070.10 Mainly Alpha;Up-down Bundle;Rhopdopsin 7-helix transmembrane proteins;Rhodopsin 7-helix transmembrane proteins 0.6001 110 189 1.20.1070.10
af_Q4CZM6_26_149_1.20.120.350 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Voltage-gated potassium channels. Chain C 0.5993 73 188 1.20.120.350
af_Q9H1K6_144_260_1.20.120.230 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Alpha-catenin/vinculin-like 0.5923 70 180 1.20.120.230
af_A2AP89_490_603_1.20.120.230 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Alpha-catenin/vinculin-like 0.5899 72 184 1.20.120.230
ID Description Score Start End GO Terms
AF-T0YZH0-F1-model_v4 Cytochrome c assembly protein 0.9402 16 176 GO:0005886
GO:0015232
GO:0017004
GO:0020037
AF-A0A2M7FI51-F1-model_v4 Heme exporter protein C 0.9391 14 183 GO:0005886
GO:0015232
GO:0017004
GO:0020037
AF-A0A3C0GVK2-F1-model_v4 Heme exporter protein C (Cytochrome c-type biogenesis protein CcmC) 0.9364 9 188 GO:0005886
GO:0015232
GO:0017004
GO:0020037
AF-A0A2M7MYV8-F1-model_v4 Heme exporter protein C (Cytochrome c-type biogenesis protein) 0.9291 15 251 GO:0005886
GO:0015232
GO:0017004
GO:0020037
AF-A0A3D2B3S4-F1-model_v4 Heme exporter protein C (Cytochrome c-type biogenesis protein) 0.929 13 180 GO:0005886
GO:0015232
GO:0017004
GO:0020037

Map