F377126

General Info

Members Datasets Scaffolds Average Seq Length
270 177 251 474

Family's Representative Sequence

Representative Sequence 3300044658|Ga0466972_0000006|Ga0466972_0000006_165389_166942
Length 517
Sequence MECVREKVEQNKLLTRCAGSLSKNNHLMPGSTTSFRRSFSLLDATMIVAGSMIGSGIFIVSADITRNVGSAGWLIVVWLLTGALTLTAALSYGELSAMYPKAGGQYVYLKEAFNPLVGFLYGWSFFAVIQTGSIAAVGVAFSKFAAYLFPTLSDQHIIADLGFIKISAAQLTSILLIILLSYINTKGVKEGKIIQTSFTLAKLLALFALIVFGFLLAARKEVWQTNWAQGFHLQKMEQGQWLPYTGFAALGAVAASMVGSLFSSDSWNNVTFIAGEIKRPERNIGLSLFLGTLIVTLIYVAANFMYISVLPLHEIGFAENDRVGVAASVYIFGSSGTLIIAIMLMISTFGCDNGLILSGARVYYTMAKDGLFFKQVATLNKNAVPAKALWLQCVWASLLCLSGKYGELLDYVIFVVLIFYILTIAGIFRLRKTRPDIPRPYKAFGYPVLPLLYILSASVICIALLVYKPYFTWPGLCIVLLGIPVYYFVWGKQAARTQTIPATGNGDAEIASAEANK

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2585427687 Pedobacter borealis DSM 19626 Isolate Rhizosphere
3 2738541283 Pedobacter sp. OK701 Isolate Unclassified
4 2738541302 Pedobacter sp. CF074 Isolate Unclassified
5 2739367651 Pedobacter sp. OK291 Isolate Unclassified
6 2739367656 Pedobacter sp. CF523 Isolate Unclassified
7 2818991437 Pedobacter terrae 518 Isolate Unclassified
8 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
9 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
10 2842722452 Pedobacter sp. R-72249 Isolate Unclassified
11 2842909656 Pedobacter sp. R-72393 Isolate Unclassified
12 2849281842 Pedobacter sp. AK013 Isolate Rhizosphere
13 2904445276 Pedobacter terrae 1734 Isolate Rhizosphere
14 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
15 2914759650 Rhizosphaericola mali Isolate Rhizosphere
16 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
17 2929921140 Chitinophaga sp. R-72609 Hybrid assembly Isolate Unclassified
18 2945997725 Pedobacter sp. W3I1 Isolate Rhizosphere
19 2954016120 Flavobacterium sp. W4I14 Isolate Rhizosphere
20 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
21 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
22 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
23 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
24 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
25 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
26 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
27 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
28 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
29 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
30 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
31 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
32 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
33 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
34 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
35 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
36 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
37 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
38 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
39 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
40 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
41 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
42 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
43 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
44 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
45 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
46 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
47 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
48 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
49 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
50 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
51 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
52 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
53 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
54 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
55 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
56 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
57 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
58 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
59 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
60 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
61 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
62 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
63 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
64 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
65 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
66 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
67 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
68 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
69 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
70 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
71 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
72 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
73 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
74 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
75 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
76 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
77 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
78 3300015682 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_A01 Metagenome Rhizosphere
79 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
80 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
81 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
82 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
83 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
84 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
85 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
86 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
87 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
88 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
89 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
90 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
106 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
109 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
110 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
111 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
112 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
113 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
114 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
115 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
116 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
117 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
118 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
119 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
120 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
121 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
122 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
123 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
124 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
125 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
126 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
127 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
128 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
129 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
130 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
131 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
132 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
133 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
134 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
135 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
136 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
137 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
138 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
139 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
140 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
141 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
142 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
143 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
144 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
145 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
146 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
147 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
148 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
149 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
150 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
151 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
152 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
153 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
154 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
155 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
156 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
157 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
158 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
159 3300049670 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_B_2_drought Metagenome Rhizosphere
160 3300049686 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I11_B_3_control Metagenome Rhizosphere
161 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
162 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
163 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
164 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
165 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
166 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
167 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
168 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
169 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
170 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
171 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
172 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
173 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
174 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
175 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
176 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
177 8003151029 Chitinophaga sp. GbtcB8 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 92.96
Metatranscriptomes 0
Isolates 7.04

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 15.56
Nodule 0
Rhizoplane 0.37
Rhizosphere 72.59
Stem 0
Stem Tuber 0
Unclassified 11.48

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2310481 2162886007 Bacteria 9650
2 SwRhRL2b_contig_2990015 2162886007 Bacteria 52405
3 JGI24739J22299_10025141 3300001989 Bacteria 2094
4 JGI25154J39366_1000012 3300002738 Bacteria 287601
5 JGI25153J46596_10021531 3300003215 Bacteria 2400
6 rootH1_10045999 3300003316 Bacteria 6864
7 rootH1_10155232 3300003316 Bacteria 6560
8 rootH2_10002321 3300003320 Bacteria 110257
9 rootL2_10021820 3300003322 Bacteria 6959
10 rootH1_10097171 3300003323 Bacteria 5240
11 rootH1_10154201 3300003323 Bacteria 5042
12 JGI25160J50197_1002897 3300003354 Bacteria 7852
13 JGI25160J50197_1003707 3300003354 Bacteria 6742
14 Ga0055535_1000697 3300003761 Bacteria 25917
15 Ga0055526_1018936 3300003771 Bacteria 2535
16 Ga0055536_1000052 3300003781 Bacteria 111581
17 Ga0055536_1000068 3300003781 Bacteria 96642
18 Ga0055528_1000153 3300003790 Bacteria 57255
19 Ga0055530_10000805 3300003791 Bacteria 26057
20 Ga0055530_10002260 3300003791 Bacteria 12674
21 Ga0055531_10000030 3300003794 Bacteria 157459
22 Ga0055531_10000344 3300003794 Bacteria 45645
23 Ga0065165_1000159 3300005262 Bacteria 116983
24 Ga0065165_1000730 3300005262 Bacteria 45892
25 Ga0065165_1010635 3300005262 Bacteria 3945
26 Ga0065714_10002467 3300005288 Bacteria 23476
27 Ga0065714_10064917 3300005288 Bacteria 15520
28 Ga0065714_10067793 3300005288 Bacteria 5145
29 Ga0065704_10000219 3300005289 Bacteria 83241
30 Ga0065704_10070151 3300005289 Bacteria 259038
31 Ga0070658_10095867 3300005327 Bacteria 2449
32 Ga0070683_100086555 3300005329 Bacteria 2938
33 Ga0068868_100019476 3300005338 Bacteria 5085
34 Ga0070675_100094248 3300005354 Unclassified 2512
35 Ga0070671_100148707 3300005355 Bacteria 1977
36 Ga0070674_100060061 3300005356 Unclassified 2649
37 Ga0070673_100008417 3300005364 Bacteria 6859
38 Ga0070678_100061658 3300005456 Unclassified 2765
39 Ga0068853_100009618 3300005539 Bacteria 7790
40 Ga0070672_100055383 3300005543 Unclassified 3106
41 Ga0070686_100030493 3300005544 Unclassified 3290
42 Ga0070665_100000006 3300005548 Bacteria 718034
43 Ga0068855_100022166 3300005563 Bacteria 7611
44 Ga0068857_100001316 3300005577 Bacteria 19543
45 Ga0068856_100193859 3300005614 Bacteria 2046
46 Ga0068852_100105029 3300005616 Bacteria 2558
47 Ga0068859_100044296 3300005617 Bacteria 4471
48 Ga0068860_100000005 3300005843 Bacteria 472349
49 Ga0068860_100001122 3300005843 Bacteria 29492
50 Ga0068860_100011729 3300005843 Bacteria 8637
51 Ga0068860_100027601 3300005843 Bacteria 5466
52 Ga0068862_100019408 3300005844 Bacteria 5674
53 Ga0068871_100088665 3300006358 Bacteria 2574
54 Ga0075428_100146841 3300006844 Bacteria 2563
55 Ga0097620_100044295 3300006931 Bacteria 4471
56 Ga0105240_10000140 3300009093 Bacteria 148591
57 Ga0105240_10000419 3300009093 Bacteria 78633
58 Ga0105240_10002576 3300009093 Bacteria 29055
59 Ga0105240_10021980 3300009093 Bacteria 8474
60 Ga0105240_10036012 3300009093 Bacteria 6373
61 Ga0105240_10167800 3300009093 Bacteria 2602
62 Ga0111539_10269230 3300009094 Bacteria 1983
63 Ga0105241_10002424 3300009174 Bacteria 13991
64 Ga0105241_10112578 3300009174 Unclassified 2180
65 Ga0105237_10002298 3300009545 Bacteria 23763
66 Ga0105237_10002524 3300009545 Bacteria 22675
67 Ga0105237_10007754 3300009545 Bacteria 11710
68 Ga0105237_10044269 3300009545 Bacteria 4482
69 Ga0105238_10019425 3300009551 Bacteria 6920
70 Ga0105238_10027257 3300009551 Bacteria 5821
71 Ga0105238_10031565 3300009551 Bacteria 5393
72 Ga0105238_10095580 3300009551 Bacteria 2958
73 Ga0105239_10002826 3300010375 Bacteria 21717
74 Ga0105239_10022903 3300010375 Bacteria 6886
75 Ga0157373_10000097 3300013100 Bacteria 71713
76 Ga0157371_10000150 3300013102 Bacteria 101524
77 Ga0157371_10015813 3300013102 Bacteria 5645
78 Ga0157371_10054034 3300013102 Bacteria 2853
79 Ga0157370_10005439 3300013104 Bacteria 14285
80 Ga0157370_10010964 3300013104 Bacteria 9511
81 Ga0157370_10025743 3300013104 Bacteria 5821
82 Ga0157370_10174771 3300013104 Unclassified 1996
83 Ga0157369_10000004 3300013105 Bacteria 479764
84 Ga0157374_10284321 3300013296 Unclassified 1633
85 Ga0157378_10003165 3300013297 Bacteria 14626
86 Ga0157378_10088664 3300013297 Bacteria 2808
87 Ga0163162_10000699 3300013306 Bacteria 30970
88 Ga0163162_10011689 3300013306 Bacteria 8561
89 Ga0163162_10022120 3300013306 Bacteria 6266
90 Ga0163162_10266780 3300013306 Unclassified 1843
91 Ga0157372_10000052 3300013307 Bacteria 135497
92 Ga0157372_10036974 3300013307 Bacteria 5383
93 Ga0157372_10065828 3300013307 Bacteria 4070
94 Ga0157380_10055279 3300014326 Bacteria 3152
95 Ga0182008_10000471 3300014497 Bacteria 30819
96 Ga0182008_10001049 3300014497 Bacteria 19171
97 Ga0182006_1000134 3300015261 Bacteria 80259
98 Ga0182006_1000288 3300015261 Bacteria 44377
99 Ga0182006_1000370 3300015261 Bacteria 37249
100 Ga0182006_1006818 3300015261 Bacteria 5270
101 Ga0182007_10000006 3300015262 Bacteria 427355
102 Ga0182005_1000083 3300015265 Bacteria 73600
103 Ga0183373_1001 3300015682 Bacteria 1410374
104 Ga0163161_10000434 3300017792 Bacteria 35026
105 Ga0163161_10006123 3300017792 Bacteria 8335
106 Ga0209258_100278 3300025242 Bacteria 86316
107 Ga0209646_1000009 3300025246 Bacteria 652154
108 Ga0209026_1000209 3300025250 Bacteria 81291
109 Ga0209148_1000248 3300025254 Bacteria 86083
110 Ga0209673_1000016 3300025273 Bacteria 506202
111 Ga0209676_1000090 3300025292 Bacteria 256336
112 Ga0209758_1013024 3300025297 Bacteria 4582
113 Ga0209050_1000091 3300025298 Bacteria 253049
114 Ga0209050_1000608 3300025298 Bacteria 56778
115 Ga0209050_1000953 3300025298 Bacteria 37629
116 Ga0207426_1000032 3300025302 Bacteria 457997
117 Ga0207426_1000658 3300025302 Bacteria 42320
118 Ga0207426_1000834 3300025302 Bacteria 32701
119 Ga0207426_1006532 3300025302 Bacteria 5049
120 Ga0207426_1015469 3300025302 Bacteria 2764
121 Ga0209257_1000005 3300025304 Bacteria 1592528
122 Ga0209257_1000013 3300025304 Bacteria 1047305
123 Ga0209257_1000831 3300025304 Bacteria 44552
124 Ga0209257_1013689 3300025304 Bacteria 3574
125 Ga0207647_10015718 3300025904 Bacteria 5183
126 Ga0207695_10000027 3300025913 Bacteria 612456
127 Ga0207695_10000164 3300025913 Bacteria 196777
128 Ga0207695_10003547 3300025913 Bacteria 21861
129 Ga0207695_10044485 3300025913 Bacteria 4722
130 Ga0207695_10064689 3300025913 Bacteria 3764
131 Ga0207695_10193599 3300025913 Bacteria 1950
132 Ga0207671_10009851 3300025914 Bacteria 7947
133 Ga0207671_10017819 3300025914 Bacteria 5464
134 Ga0207671_10025622 3300025914 Bacteria 4428
135 Ga0207662_10042775 3300025918 Bacteria 2671
136 Ga0207649_10064507 3300025920 Unclassified 2316
137 Ga0207694_10011190 3300025924 Bacteria 6772
138 Ga0207694_10181293 3300025924 Bacteria 1708
139 Ga0207659_10045668 3300025926 Unclassified 3090
140 Ga0207644_10063554 3300025931 Unclassified 2680
141 Ga0207691_10011368 3300025940 Bacteria 8544
142 Ga0207667_10002024 3300025949 Bacteria 25418
143 Ga0207658_10085476 3300025986 Bacteria 2430
144 Ga0207639_10009584 3300026041 Bacteria 6686
145 Ga0207674_10022914 3300026116 Bacteria 6700
146 Ga0207683_10044744 3300026121 Bacteria 3870
147 Ga0207698_10061235 3300026142 Bacteria 2932
148 Ga0207698_10191173 3300026142 Unclassified 1823
149 Ga0268266_10000010 3300028379 Bacteria 1030233
150 Ga0268265_10014534 3300028380 Bacteria 5365
151 Ga0268264_10000012 3300028381 Bacteria 521740
152 Ga0268264_10020475 3300028381 Bacteria 5405
153 Ga0268264_10030671 3300028381 Bacteria 4407
154 Ga0307517_10000696 3300028786 Bacteria 57978
155 Ga0307515_10074768 3300028794 Bacteria 4525
156 Ga0265338_10102792 3300028800 Bacteria 2323
157 Ga0307511_10000850 3300030521 Bacteria 32503
158 Ga0265330_10003269 3300031235 Bacteria 8527
159 Ga0265327_10000232 3300031251 Bacteria 112743
160 Ga0265327_10001258 3300031251 Bacteria 33601
161 Ga0307513_10140832 3300031456 Bacteria 2339
162 Ga0307408_100000578 3300031548 Bacteria 31539
163 Ga0307408_100001086 3300031548 Bacteria 20801
164 Ga0307408_100001939 3300031548 Bacteria 14992
165 Ga0307408_100039205 3300031548 Bacteria 3347
166 Ga0265313_10044518 3300031595 Bacteria 2166
167 Ga0265342_10019696 3300031712 Bacteria 4344
168 Ga0307516_10002277 3300031730 Bacteria 25890
169 Ga0307405_10000012 3300031731 Bacteria 233774
170 Ga0307407_10000014 3300031903 Bacteria 156064
171 Ga0307412_10000031 3300031911 Bacteria 207128
172 Ga0307412_10094535 3300031911 Bacteria 2099
173 Ga0307416_100000007 3300032002 Bacteria 433284
174 Ga0307414_10009648 3300032004 Bacteria 5556
175 Ga0395900_0123649 3300037418 Bacteria 2654
176 Ga0395900_0126539 3300037418 Bacteria 2621
177 Ga0395905_0094527 3300037471 Bacteria 2804
178 Ga0451577_0003932 3300042876 Bacteria 16050
179 Ga0451577_0062919 3300042876 Bacteria 3309
180 Ga0466972_0000003 3300044658 Bacteria 391452
181 Ga0466972_0000006 3300044658 Bacteria 282264
182 Ga0466972_0001018 3300044658 Bacteria 13429
183 Ga0453683_0000718 3300044673 Bacteria 34148
184 Ga0453684_0000530 3300044712 Bacteria 145639
185 Ga0453684_0012324 3300044712 Bacteria 14148
186 Ga0453684_0012565 3300044712 Bacteria 13939
187 Ga0453684_0013255 3300044712 Bacteria 13427
188 Ga0453684_0167165 3300044712 Bacteria 2596
189 Ga0453684_0309944 3300044712 Bacteria 1791
190 Ga0466968_0029417 3300044735 Bacteria 2272
191 Ga0466970_0000423 3300044765 Bacteria 20674
192 Ga0495627_014828 3300046453 Bacteria 2706
193 Ga0495638_0000005 3300046460 Bacteria 680627
194 Ga0495607_0021172 3300046501 Bacteria 4095
195 Ga0495610_0000089 3300046512 Bacteria 106925
196 Ga0495648_0025783 3300046524 Bacteria 3971
197 Ga0495633_0000245 3300046558 Bacteria 64798
198 Ga0495611_0023107 3300046648 Bacteria 2696
199 Ga0495687_000243 3300047443 Bacteria 75026
200 Ga0495686_0012924 3300047472 Bacteria 5822
201 Ga0496101_0033055 3300048904 Bacteria 3646
202 Ga0496121_0000007 3300048924 Bacteria 942516
203 Ga0496122_0001285 3300048925 Bacteria 41682
204 Ga0496123_0002553 3300048926 Bacteria 22190
205 Ga0496125_0032196 3300048928 Bacteria 4661
206 Ga0501031_0003321 3300049568 Bacteria 10323
207 Ga0501032_0020742 3300049569 Bacteria 4575
208 Ga0501032_0022329 3300049569 Bacteria 4387
209 Ga0501033_0000036 3300049570 Bacteria 148612
210 Ga0501033_0101801 3300049570 Bacteria 2095
211 Ga0501034_0000633 3300049571 Bacteria 54605
212 Ga0501034_0094097 3300049571 Bacteria 2993
213 Ga0501036_0093779 3300049572 Bacteria 2537
214 Ga0501037_0006969 3300049573 Bacteria 8257
215 Ga0501037_0007976 3300049573 Bacteria 7761
216 Ga0501038_0043336 3300049574 Bacteria 3913
217 Ga0501038_0065829 3300049574 Bacteria 3087
218 Ga0501039_0040249 3300049575 Bacteria 3608
219 Ga0501039_0095071 3300049575 Bacteria 2323
220 Ga0501043_0009031 3300049579 Bacteria 7842
221 Ga0501043_0018086 3300049579 Bacteria 5527
222 Ga0501043_0023389 3300049579 Bacteria 4847
223 Ga0501046_0088682 3300049580 Bacteria 2382
224 Ga0501047_0006941 3300049581 Bacteria 10639
225 Ga0501047_0025386 3300049581 Bacteria 5696
226 Ga0501202_002086 3300049652 Bacteria 3316
227 Ga0501235_009853 3300049669 Bacteria 2090
228 Ga0501236_000951 3300049670 Bacteria 3267
229 Ga0501257_001174 3300049686 Bacteria 5358
230 Ga0501257_006439 3300049686 Bacteria 2605
231 Ga0501259_001159 3300049688 Bacteria 4388
232 Ga0501225_0017828 3300049705 Bacteria 1970
233 Ga0501241_001347 3300049758 Bacteria 5056
234 Ga0501035_0005484 3300049822 Bacteria 11987
235 Ga0501044_0029724 3300049823 Bacteria 5761
236 Ga0501044_0056094 3300049823 Bacteria 4044
237 Ga0501044_0161027 3300049823 Unclassified 2221
238 Ga0501045_0005945 3300049824 Bacteria 8439
239 nmdc:mga09592_159031_c1 3300050508 Unclassified 1951
240 nmdc:mga08y16_102466_c1 3300050511 Bacteria 2980
241 nmdc:mga08y16_132497_c1 3300050511 Bacteria 2591
242 Ga0500644_0000060 3300053088 Bacteria 63206
243 Ga0500583_0048378 3300053092 Bacteria 1963
244 Ga0500651_0020962 3300053093 Bacteria 4071
245 Ga0500607_018274 3300053121 Bacteria 3984
246 Ga0500577_0006024 3300053142 Bacteria 3311
247 Ga0500616_0000003 3300053153 Bacteria 1220687
248 Ga0500622_0000280 3300053156 Bacteria 51950
249 Ga0500622_0001193 3300053156 Bacteria 21399
250 Ga0500622_0018433 3300053156 Bacteria 3712
251 Ga0500636_0045392 3300053177 Bacteria 2592

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053093 Ga0500651_0020962 Ga0500651_0020962_2810_4060 416
2 3300044712 Ga0453684_0167165 Ga0453684_0167165_1192_2571 425
3 3300031730 Ga0307516_10002277 Ga0307516_100022779 436
4 3300044673 Ga0453683_0000718 Ga0453683_0000718_10893_12302 436
5 3300044712 Ga0453684_0309944 Ga0453684_0309944_141_1565 436
6 3300025924 Ga0207694_10181293 Ga0207694_101812932 438
7 3300048924 Ga0496121_0000007 Ga0496121_0000007_500006_501433 438
8 3300001989 JGI24739J22299_10025141 JGI24739J22299_100251411 440
9 3300003771 Ga0055526_1018936 Ga0055526_10189361 440
10 3300009174 Ga0105241_10112578 Ga0105241_101125782 445
11 3300053156 Ga0500622_0000280 Ga0500622_0000280_10786_12198 446
12 3300046453 Ga0495627_014828 Ga0495627_014828_375_1784 447
13 3300046558 Ga0495633_0000245 Ga0495633_0000245_37282_38691 447
14 3300003215 JGI25153J46596_10021531 JGI25153J46596_100215311 448
15 3300013296 Ga0157374_10284321 Ga0157374_102843212 448
16 3300048904 Ga0496101_0033055 Ga0496101_0033055_1105_2469 448
17 3300049570 Ga0501033_0000036 Ga0501033_0000036_92601_93971 448
18 3300049571 Ga0501034_0094097 Ga0501034_0094097_45_1415 448
19 3300003316 rootH1_10045999 rootH1_100459994 450
20 3300005843 Ga0068860_100000005 Ga0068860_10000000549 450
21 3300028381 Ga0268264_10000012 Ga0268264_1000001231 450
22 3300031251 Ga0265327_10000232 Ga0265327_1000023210 451
23 3300044712 Ga0453684_0012565 Ga0453684_0012565_11609_13024 451
24 3300013306 Ga0163162_10022120 Ga0163162_100221202 452
25 3300025298 Ga0209050_1000953 Ga0209050_100095333 452
26 3300037418 Ga0395900_0123649 Ga0395900_0123649_17_1420 452
27 3300049574 Ga0501038_0043336 Ga0501038_0043336_2445_3818 454
28 3300049580 Ga0501046_0088682 Ga0501046_0088682_898_2271 454
29 3300049822 Ga0501035_0005484 Ga0501035_0005484_8400_9773 454
30 3300009093 Ga0105240_10000419 Ga0105240_1000041950 455
31 3300015682 Ga0183373_1001 Ga0183373_10011040 455
32 3300025913 Ga0207695_10000027 Ga0207695_10000027327 455
33 3300049569 Ga0501032_0022329 Ga0501032_0022329_1700_3127 455
34 3300005843 Ga0068860_100027601 Ga0068860_1000276013 456
35 3300009093 Ga0105240_10002576 Ga0105240_1000257614 456
36 3300009545 Ga0105237_10002298 Ga0105237_100022982 456
37 3300009551 Ga0105238_10095580 Ga0105238_100955802 456
38 3300025914 Ga0207671_10017819 Ga0207671_100178192 456
39 3300028381 Ga0268264_10020475 Ga0268264_100204752 456
40 3300028786 Ga0307517_10000696 Ga0307517_1000069636 457
41 3300003354 JGI25160J50197_1003707 JGI25160J50197_10037072 458
42 3300003790 Ga0055528_1000153 Ga0055528_10001537 458
43 3300003791 Ga0055530_10000805 Ga0055530_1000080527 458
44 3300005262 Ga0065165_1000159 Ga0065165_100015955 458
45 3300013102 Ga0157371_10054034 Ga0157371_100540342 458
46 3300025273 Ga0209673_1000016 Ga0209673_1000016271 458
47 3300025298 Ga0209050_1000608 Ga0209050_100060838 458
48 3300025302 Ga0207426_1000658 Ga0207426_10006582 458
49 3300025302 Ga0207426_1006532 Ga0207426_10065322 458
50 3300025304 Ga0209257_1000831 Ga0209257_100083138 458
51 3300009093 Ga0105240_10021980 Ga0105240_100219805 460
52 3300014497 Ga0182008_10001049 Ga0182008_100010498 460
53 3300015261 Ga0182006_1000370 Ga0182006_100037014 460
54 3300031235 Ga0265330_10003269 Ga0265330_100032698 460
55 3300031712 Ga0265342_10019696 Ga0265342_100196963 460
56 3300049823 Ga0501044_0161027 Ga0501044_0161027_384_1892 460
57 3300003316 rootH1_10155232 rootH1_101552323 461
58 3300053153 Ga0500616_0000003 Ga0500616_0000003_829145_830548 461
59 3300005563 Ga0068855_100022166 Ga0068855_1000221662 463
60 3300005577 Ga0068857_100001316 Ga0068857_1000013167 463
61 3300005614 Ga0068856_100193859 Ga0068856_1001938592 463
62 3300009174 Ga0105241_10002424 Ga0105241_100024242 463
63 3300009545 Ga0105237_10007754 Ga0105237_100077545 463
64 3300009551 Ga0105238_10019425 Ga0105238_100194253 463
65 3300013104 Ga0157370_10010964 Ga0157370_100109643 463
66 3300013307 Ga0157372_10000052 Ga0157372_1000005248 463
67 3300025904 Ga0207647_10015718 Ga0207647_100157182 463
68 3300025913 Ga0207695_10193599 Ga0207695_101935992 463
69 3300025924 Ga0207694_10011190 Ga0207694_100111903 463
70 3300025949 Ga0207667_10002024 Ga0207667_1000202410 463
71 3300026116 Ga0207674_10022914 Ga0207674_100229144 463
72 3300031251 Ga0265327_10001258 Ga0265327_100012581 463
73 iso_pu_bacteria 2738541283 2738759319 463
74 3300025297 Ga0209758_1013024 Ga0209758_10130243 464
75 3300003322 rootL2_10021820 rootL2_100218206 465
76 3300003761 Ga0055535_1000697 Ga0055535_10006977 465
77 3300005539 Ga0068853_100009618 Ga0068853_1000096182 465
78 3300005616 Ga0068852_100105029 Ga0068852_1001050292 465
79 3300009093 Ga0105240_10000140 Ga0105240_1000014012 465
80 3300009093 Ga0105240_10167800 Ga0105240_101678003 465
81 3300009551 Ga0105238_10027257 Ga0105238_100272574 465
82 3300025242 Ga0209258_100278 Ga0209258_10027829 465
83 3300025254 Ga0209148_1000248 Ga0209148_100024829 465
84 3300025913 Ga0207695_10000164 Ga0207695_10000164143 465
85 3300025913 Ga0207695_10064689 Ga0207695_100646892 465
86 3300026041 Ga0207639_10009584 Ga0207639_100095845 465
87 3300026142 Ga0207698_10061235 Ga0207698_100612352 465
88 3300053088 Ga0500644_0000060 Ga0500644_0000060_10035_11435 465
89 3300053121 Ga0500607_018274 Ga0500607_018274_1968_3368 465
90 3300053177 Ga0500636_0045392 Ga0500636_0045392_225_1625 465
91 iso_pu_bacteria 2818991442 2819575560 465
92 iso_pu_bacteria 2821136567 2821138112 465
93 iso_pu_bacteria 2904467357 2904468907 465
94 iso_pu_bacteria 2929154850 2929157818 465
95 2162886007 SwRhRL2b_contig_2990015 SwRhRL2b_0769.00005450 466
96 3300002738 JGI25154J39366_1000012 JGI25154J39366_1000012169 466
97 3300003794 Ga0055531_10000030 Ga0055531_10000030114 466
98 3300003794 Ga0055531_10000344 Ga0055531_1000034427 466
99 3300005289 Ga0065704_10070151 Ga0065704_1007015115 466
100 3300009094 Ga0111539_10269230 Ga0111539_102692302 466
101 3300013307 Ga0157372_10065828 Ga0157372_100658282 466
102 3300025246 Ga0209646_1000009 Ga0209646_1000009106 466
103 3300025250 Ga0209026_1000209 Ga0209026_100020933 466
104 3300025302 Ga0207426_1000834 Ga0207426_100083424 466
105 3300025304 Ga0209257_1000005 Ga0209257_1000005163 466
106 3300025304 Ga0209257_1000013 Ga0209257_1000013424 466
107 3300025304 Ga0209257_1013689 Ga0209257_10136893 466
108 3300031456 Ga0307513_10140832 Ga0307513_101408322 466
109 3300031548 Ga0307408_100000578 Ga0307408_1000005785 466
110 3300031548 Ga0307408_100001086 Ga0307408_10000108619 466
111 3300031911 Ga0307412_10094535 Ga0307412_100945352 466
112 3300046460 Ga0495638_0000005 Ga0495638_0000005_294433_295836 466
113 3300049652 Ga0501202_002086 Ga0501202_002086_1184_2584 466
114 3300049686 Ga0501257_006439 Ga0501257_006439_361_1761 466
115 3300049688 Ga0501259_001159 Ga0501259_001159_1394_2794 466
116 3300053142 Ga0500577_0006024 Ga0500577_0006024_1409_2812 466
117 iso_pu_bacteria 2585427687 2586208411 466
118 iso_pu_bacteria 2738541302 2738855179 466
119 iso_pu_bacteria 2739367651 2739586507 466
120 iso_pu_bacteria 2818991437 2819547868 466
121 iso_pu_bacteria 2842722452 2842725723 466
122 iso_pu_bacteria 2842909656 2842914338 466
123 iso_pu_bacteria 2849281842 2849284715 466
124 iso_pu_bacteria 2904445276 2904447379 466
125 iso_pu_bacteria 2914759650 2914760097 466
126 iso_pu_bacteria 2945997725 2946001260 466
127 3300009545 Ga0105237_10044269 Ga0105237_100442692 467
128 3300013104 Ga0157370_10005439 Ga0157370_100054392 467
129 3300013306 Ga0163162_10011689 Ga0163162_100116898 467
130 3300014326 Ga0157380_10055279 Ga0157380_100552791 467
131 3300014497 Ga0182008_10000471 Ga0182008_1000047112 467
132 3300015261 Ga0182006_1000134 Ga0182006_100013442 467
133 3300017792 Ga0163161_10006123 Ga0163161_100061233 467
134 3300025914 Ga0207671_10025622 Ga0207671_100256222 467
135 3300047472 Ga0495686_0012924 Ga0495686_0012924_3694_5112 467
136 3300048925 Ga0496122_0001285 Ga0496122_0001285_30470_31873 467
137 3300048926 Ga0496123_0002553 Ga0496123_0002553_17617_19020 467
138 3300048928 Ga0496125_0032196 Ga0496125_0032196_2041_3444 467
139 iso_pu_bacteria 2739367656 2739614243 467
140 3300005262 Ga0065165_1000730 Ga0065165_10007308 468
141 3300009551 Ga0105238_10031565 Ga0105238_100315652 468
142 3300010375 Ga0105239_10002826 Ga0105239_1000282614 468
143 3300025913 Ga0207695_10003547 Ga0207695_100035472 468
144 3300025914 Ga0207671_10009851 Ga0207671_100098516 468
145 3300031548 Ga0307408_100001939 Ga0307408_1000019395 468
146 3300031548 Ga0307408_100039205 Ga0307408_1000392052 468
147 3300044658 Ga0466972_0000003 Ga0466972_0000003_198286_199695 468
148 3300044658 Ga0466972_0001018 Ga0466972_0001018_9599_11062 468
149 3300044735 Ga0466968_0029417 Ga0466968_0029417_663_2126 468
150 3300047443 Ga0495687_000243 Ga0495687_000243_67983_69419 468
151 3300049568 Ga0501031_0003321 Ga0501031_0003321_8706_10136 468
152 3300049569 Ga0501032_0020742 Ga0501032_0020742_1296_2726 468
153 3300049571 Ga0501034_0000633 Ga0501034_0000633_31866_33296 468
154 3300049572 Ga0501036_0093779 Ga0501036_0093779_38_1468 468
155 3300049573 Ga0501037_0007976 Ga0501037_0007976_3469_4899 468
156 3300049574 Ga0501038_0065829 Ga0501038_0065829_578_2008 468
157 3300049575 Ga0501039_0040249 Ga0501039_0040249_1642_3072 468
158 3300049579 Ga0501043_0009031 Ga0501043_0009031_3826_5256 468
159 3300049670 Ga0501236_000951 Ga0501236_000951_770_2176 468
160 3300049686 Ga0501257_001174 Ga0501257_001174_977_2383 468
161 3300049823 Ga0501044_0056094 Ga0501044_0056094_2588_4018 468
162 3300049824 Ga0501045_0005945 Ga0501045_0005945_1411_2841 468
163 iso_pu_bacteria 2929921140 2929924314 468
164 iso_pu_bacteria 8003151029 8003155594 468
165 3300003781 Ga0055536_1000052 Ga0055536_100005237 469
166 3300003781 Ga0055536_1000068 Ga0055536_100006810 469
167 3300003791 Ga0055530_10002260 Ga0055530_1000226010 469
168 3300005262 Ga0065165_1010635 Ga0065165_10106352 469
169 3300005288 Ga0065714_10064917 Ga0065714_100649172 469
170 3300005548 Ga0070665_100000006 Ga0070665_100000006107 469
171 3300006358 Ga0068871_100088665 Ga0068871_1000886652 469
172 3300006844 Ga0075428_100146841 Ga0075428_1001468412 469
173 3300009093 Ga0105240_10036012 Ga0105240_100360122 469
174 3300013102 Ga0157371_10000150 Ga0157371_1000015078 469
175 3300013104 Ga0157370_10174771 Ga0157370_101747712 469
176 3300013105 Ga0157369_10000004 Ga0157369_10000004376 469
177 3300013307 Ga0157372_10036974 Ga0157372_100369745 469
178 3300015261 Ga0182006_1000288 Ga0182006_100028823 469
179 3300015262 Ga0182007_10000006 Ga0182007_10000006166 469
180 3300015265 Ga0182005_1000083 Ga0182005_100008326 469
181 3300017792 Ga0163161_10000434 Ga0163161_1000043410 469
182 3300025292 Ga0209676_1000090 Ga0209676_1000090137 469
183 3300025298 Ga0209050_1000091 Ga0209050_1000091137 469
184 3300025302 Ga0207426_1015469 Ga0207426_10154692 469
185 3300025913 Ga0207695_10044485 Ga0207695_100444852 469
186 3300028379 Ga0268266_10000010 Ga0268266_10000010187 469
187 3300028794 Ga0307515_10074768 Ga0307515_100747684 469
188 3300028800 Ga0265338_10102792 Ga0265338_101027922 469
189 3300042876 Ga0451577_0062919 Ga0451577_0062919_98_1531 469
190 3300046512 Ga0495610_0000089 Ga0495610_0000089_56990_58429 469
191 3300046524 Ga0495648_0025783 Ga0495648_0025783_1056_2495 469
192 3300046648 Ga0495611_0023107 Ga0495611_0023107_273_1712 469
193 3300049669 Ga0501235_009853 Ga0501235_009853_157_1629 469
194 3300049705 Ga0501225_0017828 Ga0501225_0017828_120_1592 469
195 3300050511 nmdc:mga08y16_102466_c1 nmdc:mga08y16_102466_c1_1100_2509 469
196 3300050511 nmdc:mga08y16_132497_c1 nmdc:mga08y16_132497_c1_554_1984 469
197 3300053092 Ga0500583_0048378 Ga0500583_0048378_289_1728 469
198 3300053156 Ga0500622_0018433 Ga0500622_0018433_1944_3383 469
199 3300005843 Ga0068860_100001122 Ga0068860_10000112218 470
200 3300013102 Ga0157371_10015813 Ga0157371_100158134 470
201 3300013306 Ga0163162_10000699 Ga0163162_1000069925 470
202 3300013306 Ga0163162_10266780 Ga0163162_102667801 470
203 3300026121 Ga0207683_10044744 Ga0207683_100447442 470
204 3300028381 Ga0268264_10030671 Ga0268264_100306713 470
205 3300046501 Ga0495607_0021172 Ga0495607_0021172_2546_3958 470
206 3300053156 Ga0500622_0001193 Ga0500622_0001193_12702_14114 470
207 3300005288 Ga0065714_10067793 Ga0065714_100677933 471
208 3300005329 Ga0070683_100086555 Ga0070683_1000865553 471
209 3300013297 Ga0157378_10088664 Ga0157378_100886641 471
210 3300042876 Ga0451577_0003932 Ga0451577_0003932_11154_12632 471
211 3300044658 Ga0466972_0000006 Ga0466972_0000006_165389_166942 471
212 3300044712 Ga0453684_0012324 Ga0453684_0012324_9845_11323 471
213 3300044765 Ga0466970_0000423 Ga0466970_0000423_5031_6584 471
214 3300049581 Ga0501047_0006941 Ga0501047_0006941_1504_2958 471
215 iso_pu_bacteria 2954016120 2954018153 471
216 3300003320 rootH2_10002321 rootH2_1000232190 472
217 3300003323 rootH1_10154201 rootH1_101542014 472
218 3300003354 JGI25160J50197_1002897 JGI25160J50197_10028973 472
219 3300005288 Ga0065714_10002467 Ga0065714_1000246712 472
220 3300005289 Ga0065704_10000219 Ga0065704_1000021914 472
221 3300005327 Ga0070658_10095867 Ga0070658_100958671 472
222 3300005338 Ga0068868_100019476 Ga0068868_1000194764 472
223 3300005354 Ga0070675_100094248 Ga0070675_1000942482 472
224 3300005355 Ga0070671_100148707 Ga0070671_1001487071 472
225 3300005356 Ga0070674_100060061 Ga0070674_1000600612 472
226 3300005364 Ga0070673_100008417 Ga0070673_1000084172 472
227 3300005456 Ga0070678_100061658 Ga0070678_1000616582 472
228 3300005543 Ga0070672_100055383 Ga0070672_1000553832 472
229 3300005544 Ga0070686_100030493 Ga0070686_1000304933 472
230 3300005617 Ga0068859_100044296 Ga0068859_1000442964 472
231 3300005843 Ga0068860_100011729 Ga0068860_1000117295 472
232 3300005844 Ga0068862_100019408 Ga0068862_1000194083 472
233 3300006931 Ga0097620_100044295 Ga0097620_1000442954 472
234 3300013297 Ga0157378_10003165 Ga0157378_100031654 472
235 3300025302 Ga0207426_1000032 Ga0207426_100003279 472
236 3300025918 Ga0207662_10042775 Ga0207662_100427753 472
237 3300025920 Ga0207649_10064507 Ga0207649_100645072 472
238 3300025926 Ga0207659_10045668 Ga0207659_100456681 472
239 3300025931 Ga0207644_10063554 Ga0207644_100635542 472
240 3300025940 Ga0207691_10011368 Ga0207691_100113684 472
241 3300025986 Ga0207658_10085476 Ga0207658_100854762 472
242 3300026142 Ga0207698_10191173 Ga0207698_101911732 472
243 3300028380 Ga0268265_10014534 Ga0268265_100145345 472
244 3300030521 Ga0307511_10000850 Ga0307511_100008509 472
245 3300031595 Ga0265313_10044518 Ga0265313_100445182 472
246 3300031911 Ga0307412_10000031 Ga0307412_1000003156 472
247 3300032004 Ga0307414_10009648 Ga0307414_100096482 472
248 3300044712 Ga0453684_0000530 Ga0453684_0000530_129168_130661 472
249 3300044712 Ga0453684_0013255 Ga0453684_0013255_8203_9711 472
250 3300049570 Ga0501033_0101801 Ga0501033_0101801_67_1494 472
251 3300049573 Ga0501037_0006969 Ga0501037_0006969_6820_8247 472
252 3300049575 Ga0501039_0095071 Ga0501039_0095071_419_1846 472
253 3300049579 Ga0501043_0018086 Ga0501043_0018086_2699_4126 472
254 3300049579 Ga0501043_0023389 Ga0501043_0023389_336_1760 472
255 3300049581 Ga0501047_0025386 Ga0501047_0025386_3148_4575 472
256 3300049758 Ga0501241_001347 Ga0501241_001347_3143_4561 472
257 3300049823 Ga0501044_0029724 Ga0501044_0029724_402_1829 472
258 3300050508 nmdc:mga09592_159031_c1 nmdc:mga09592_159031_c1_314_1741 472
259 3300037418 Ga0395900_0126539 Ga0395900_0126539_1025_2476 473
260 3300037471 Ga0395905_0094527 Ga0395905_0094527_441_1892 473
261 3300031731 Ga0307405_10000012 Ga0307405_10000012117 474
262 3300031903 Ga0307407_10000014 Ga0307407_1000001429 474
263 3300032002 Ga0307416_100000007 Ga0307416_10000000790 474
264 3300003323 rootH1_10097171 rootH1_100971713 475
265 2162886007 SwRhRL2b_contig_2310481 SwRhRL2b_0171.00000160 478
266 3300009545 Ga0105237_10002524 Ga0105237_100025245 478
267 3300010375 Ga0105239_10022903 Ga0105239_100229033 478
268 3300013100 Ga0157373_10000097 Ga0157373_1000009743 478
269 3300013104 Ga0157370_10025743 Ga0157370_100257434 478
270 3300015261 Ga0182006_1006818 Ga0182006_10068182 478

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00324

AA_permease

Amino acid permease

43

490

0.9

PF13520

AA_permease_2

Amino acid permease

39

489

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
7dsk-assembly1.cif.gz_B overall structure of the lat1-4f2hc bound with jx-075 0.8956 12 466
7p9v-assembly1.cif.gz_B cryo em structure of system xc- 0.875 20 467
6f2g-assembly1.cif.gz_A bacterial asc transporter crystal structure in open to in conformation 0.8724 20 470
6li9-assembly1.cif.gz_B heteromeric amino acid transporter b0,+at-rbat complex bound with arginine 0.8709 18 466
3ob6-assembly1.cif.gz_A structure of adic(n101a) in the open-to-out arg+ bound conformation 0.863 16 475
ID Description Score Start End Superfamily
af_D4ADU2_38_483_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9453 14 468 1.20.1740.10
af_Q2FYJ4_6_440_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9308 14 473 1.20.1740.10
af_Q8IR48_79_518_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9262 15 472 1.20.1740.10
af_Q2FYJ4_6_440_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9246 14 473 1.20.1740.10
af_Q50E62_26_473_1.20.1740.10 Mainly Alpha;Up-down Bundle;Amino acid/polyamine transporter I;Amino acid/polyamine transporter I 0.9238 14 472 1.20.1740.10
ID Description Score Start End GO Terms
AF-A0A1E4F826-F1-model_v4 Amino acid permease 0.9584 18 478 GO:0005886
GO:0015179
AF-A0A7X4IRP4-F1-model_v4 Amino acid permease 0.9515 11 457 GO:0005886
GO:0015179
AF-A0A7X4IRP4-F1-model_v4 Amino acid permease 0.9427 11 457 GO:0005886
GO:0015179
AF-G1SP18-F1-model_v4 Solute carrier family 7 member 9 0.94 9 466 GO:0015175
GO:0015184
GO:0016020
AF-A0A1E4F826-F1-model_v4 Amino acid permease 0.9369 18 478 GO:0005886
GO:0015179

Feature Viewer

pLDDT pTM Quality
88.04 0.88 High
Powered by Feature Viewer

Predicted Structure (AlphaFold2)

Powered by PDBe Molstar
Download PDB Download HMM

Map