F375883

General Info

Members Datasets Scaffolds Average Seq Length
268 209 534 504

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2899370129|2899374250
Length 518
Sequence GRTKHEQKGCEMTKYAAPGQSGSVVAFEPRYDHFIGGEYVPPVKGGYFANPTPVTGQTFTEIARGTAGDVDRAVAAAAGAAVAWGRTAAAERAAVLNKIADRMEANLEALAVAESWENGKPVRETLVADIPLAIDHFRYFAGAARAQEGSISQIDADTVAYHFPEPLGVVGQIIPWNFPILMATWKLAPALAAGNCVVLKPAEQTPASVHVLLSLIADLLPPGVLNVVNGFGVEAGKPLAQHPGIRKVAFTGETTTGRLIMQYASENIIPVTLELGGKSPNIFFEDVAAAKDSFYDKAQEGFAMFALNQGEVCTCPSRALVQSSIYQEFLGDVTARVEKIKQGHPLDTETMIGAQASSDQLEKILSYIDIGRQEGAKVLAGGERAQLGGELSGGFYVQPTIFEGDNKMRIFQEEIFGPVVSVTAFNDYADAIKIANDTLYGLGAGVWSRDGATAFRAGRDIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLDHYQQTKNLLVSYSPDAQGFF

Samples

Sample ID Description Type Environment
1 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
2 3300002074 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1 Metagenome Rhizosphere
3 3300002076 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3 Metagenome Rhizosphere
4 3300002077 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3 Metagenome Rhizosphere
5 3300002239 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
6 3300003285 Grassland soil microbial communities from Hopland, California, USA - Sample H3_Rhizo_39 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
7 3300003558 Arabidopsis rhizosphere microbial communities from the University of North Carolina, USA - metaT NBMF1_10_fullP_mix1_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
8 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
9 3300003752 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 Metagenome Endosphere
10 3300004798 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
11 3300004801 Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
12 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
13 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
14 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
15 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
16 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
17 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
18 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
19 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
20 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
21 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
22 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
23 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
24 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
25 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
26 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
27 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
28 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
29 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
30 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
31 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
32 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
33 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
36 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
37 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
38 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
39 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
40 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
41 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
42 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
43 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
44 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
45 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
46 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
47 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
50 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
51 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
52 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
53 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
54 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
83 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
84 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
85 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
86 3300031838 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM Metagenome Unclassified
87 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
88 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
89 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
90 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
91 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
92 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
93 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
94 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
95 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
96 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
97 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
98 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
99 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
100 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
101 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
102 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
103 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
104 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
105 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
106 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
107 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
108 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
109 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
110 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
111 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
112 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
113 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
114 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
115 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
116 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
117 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
118 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
119 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
120 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
121 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
122 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
123 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
124 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
125 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
126 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
127 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
128 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
129 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
130 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
131 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
132 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
133 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
134 3300049534 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_B_2_drought (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
135 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
136 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
137 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
138 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
140 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
142 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
143 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
144 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
145 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
146 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
147 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
148 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
149 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
150 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
151 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
152 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
153 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
154 2551306166 Nocardia tenerifensis NBRC 101015 Isolate Rhizosphere
155 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
156 2582580736 Prauserella sp. Am3 Isolate Unclassified
157 2585427649 Amycolatopsis japonica MG417-CF17, DSM 44213 Isolate Unclassified
158 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
159 2643221697 Aeromicrobium sp. Root495 Isolate Unclassified
160 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
161 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
162 2671180195 Frankia sp. CcI49 Isolate Nodule
163 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
164 2738543005 Rhodococcus sp. OK519 Isolate Unclassified
165 2738543011 Rhodococcus sp. OK611 Isolate Unclassified
166 2738543034 Rhodococcus sp. OK269 Isolate Unclassified
167 2751185788 Curtobacterium pusillum AA3 Isolate Unclassified
168 2773857922 Frankia sp. CcI49 Isolate Nodule
169 2784132109 Dermacoccus sp. DS28 SAI-028 Isolate Unclassified
170 2808606372 Agromyces sp. 23-23 Isolate Unclassified
171 2811994880 Cellulomonas sp. SLBN-39 Isolate Unclassified
172 2811994917 Streptomyces sp. SLBN-134 Isolate Unclassified
173 2842888712 Tsukamurella sp. R-71941 Isolate Unclassified
174 2852677369 Pseudoclavibacter sp. JAI123 Isolate Rhizosphere
175 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
176 2857733635 Salinibacterium sp. R-73062 Isolate Unclassified
177 2862507626 Streptomyces sp. NWU339 Isolate Unclassified
178 2866612099 Amycolatopsis suaedae 8-3EHSu Isolate Unclassified
179 2870622029 Conyzicola lurida DSM 105784 Isolate Unclassified
180 2884994152 Cellulomonas sp. H30R-01 Isolate Rhizosphere
181 2889300758 Rhodococcus sp. PvR099 Isolate Rhizosphere
182 2904430863 Curtobacterium oceanosedimentum 1519 Isolate Rhizosphere
183 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
184 2904770941 Rhodococcus fascians 1339 Isolate Rhizosphere
185 2909074476 Curtobacterium sp. 1310 Isolate Rhizosphere
186 2915358134 Pseudonocardia pini CAP47R Isolate Unclassified
187 2915768154 Amycolatopsis pittospori PIP199 Isolate Unclassified
188 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
189 2919039151 Curtobacterium sp. 260 Isolate Rhizosphere
190 2919042368 Curtobacterium sp. 320 Isolate Rhizosphere
191 2919051321 Sinomonas atrocyanea 1003 Isolate Rhizosphere
192 2922554459 Rhodococcus sp. 66b Isolate Unclassified
193 2928104781 Curtobacterium sp. 1544 Isolate Rhizosphere
194 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere
195 2928142448 Prescottella equi DPS 2018 Isolate Unclassified
196 2939657138 Conyzicola nivalis 2857 Isolate Rhizosphere
197 2939743619 Rhodococcus sp. PvR044 Isolate Rhizosphere
198 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere
199 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
200 2974315732 Rhodococcus sp. SORGH_AS 301 Isolate Unclassified
201 2984523437 Rhodococcus sp. SORGH_AS303 Isolate Aerial Root
202 2984551494 Curtobacterium sp. SORGH_AS776 Isolate Aerial Root
203 2984592036 Aeromicrobium sp. SORGH_AS981 Isolate Aerial Root
204 3006393351 Streptomyces sp. SID4985 Isolate Unclassified
205 3006493962 Streptomyces grisecoloratus TRM S81-3 Isolate Rhizosphere
206 8002811521 Leucobacter chinensis NC76-1 Isolate Rhizosphere
207 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
208 8054472261 Pseudonocardia terrae RS11V-5 Isolate Rhizosphere
209 8055172936 Sphaerisporangium perillae NEAU-ZS1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 76.49
Metatranscriptomes 2.24
Isolates 21.27

Biome Distribution

Category Percentage (%)
Aerial Root 1.12
Bulb 0
Endosphere 6.72
Nodule 0.75
Rhizoplane 7.09
Rhizosphere 56.72
Stem 0
Stem Tuber 0.37
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10030648 3300001989 Bacteria 1863
2 JGI24748J21848_1001084 3300002074 Bacteria 2965
3 JGI24749J21850_1004035 3300002076 Bacteria 2049
4 JGI24744J21845_10013035 3300002077 Bacteria 1679
5 JGI24034J26672_10001860 3300002239 Bacteria 2846
6 Ga0007423J48922_100726 3300003285 Bacteria 2660
7 Ga0006558J51389_1024016 3300003558 Bacteria 1679
8 Ga0006562J51391_1003403 3300003578 Bacteria 5905
9 Ga0055539_1000035 3300003752 Bacteria 217588
10 Ga0058859_10055097 3300004798 Bacteria 2173
11 Ga0058860_10067477 3300004801 Bacteria 2253
12 Ga0070683_100126948 3300005329 Bacteria 2411
13 Ga0068868_100124279 3300005338 Bacteria 2106
14 Ga0070687_100026944 3300005343 Bacteria 2771
15 Ga0070661_100060042 3300005344 Bacteria 2790
16 Ga0070668_100033804 3300005347 Bacteria 3895
17 Ga0070675_100112959 3300005354 Bacteria 2300
18 Ga0070671_100008134 3300005355 Bacteria 8396
19 Ga0070674_100057006 3300005356 Bacteria 2710
20 Ga0070673_100123522 3300005364 Bacteria 2163
21 Ga0070709_10021375 3300005434 Bacteria 3768
22 Ga0070713_100065977 3300005436 Bacteria 3042
23 Ga0070710_10000317 3300005437 Bacteria 23027
24 Ga0070700_100050857 3300005441 Bacteria 2577
25 Ga0070700_100106567 3300005441 Bacteria 1856
26 Ga0070708_100227580 3300005445 Bacteria 1750
27 Ga0070663_100077736 3300005455 Bacteria 2430
28 Ga0070663_100087681 3300005455 Bacteria 2300
29 Ga0070678_100027628 3300005456 Bacteria 3855
30 Ga0070662_100047532 3300005457 Bacteria 3087
31 Ga0070685_10033708 3300005466 Bacteria 2879
32 Ga0070665_100012179 3300005548 Bacteria 8672
33 Ga0070665_100206829 3300005548 Bacteria 1963
34 Ga0070664_100156263 3300005564 Bacteria 2015
35 Ga0068857_100065436 3300005577 Bacteria 3232
36 Ga0068854_100030865 3300005578 Bacteria 3720
37 Ga0068860_100010061 3300005843 Bacteria 9372
38 Ga0068860_100054760 3300005843 Bacteria 3791
39 Ga0075364_10018020 3300006051 Bacteria 4417
40 Ga0070715_10004315 3300006163 Bacteria 4644
41 Ga0075362_10034099 3300006177 Bacteria 2217
42 Ga0075369_10000499 3300006186 Bacteria 12208
43 Ga0097621_100046731 3300006237 Bacteria 3504
44 Ga0075370_10057473 3300006353 Bacteria 2211
45 Ga0105250_10053275 3300009092 Bacteria 1623
46 Ga0105243_10017633 3300009148 Bacteria 5400
47 Ga0105241_10027992 3300009174 Bacteria 4197
48 Ga0105238_10244780 3300009551 Bacteria 1771
49 Ga0105239_10090405 3300010375 Bacteria 3378
50 Ga0157369_10093741 3300013105 Bacteria 3205
51 Ga0157374_10020342 3300013296 Bacteria 5887
52 Ga0163162_10216940 3300013306 Bacteria 2043
53 Ga0157375_10065595 3300013308 Bacteria 3620
54 Ga0157375_10107812 3300013308 Bacteria 2879
55 Ga0157377_10050166 3300014745 Bacteria 2349
56 Ga0157376_10123456 3300014969 Bacteria 2299
57 Ga0213876_10000967 3300021384 Bacteria 18895
58 Ga0213875_10000422 3300021388 Bacteria 37067
59 Ga0213875_10007691 3300021388 Bacteria 5551
60 Ga0207653_10017573 3300025885 Bacteria 2252
61 Ga0207682_10055347 3300025893 Bacteria 1649
62 Ga0207688_10005648 3300025901 Bacteria 6803
63 Ga0207688_10032327 3300025901 Bacteria 2891
64 Ga0207688_10090778 3300025901 Bacteria 1754
65 Ga0207643_10019589 3300025908 Bacteria 3709
66 Ga0207693_10188888 3300025915 Bacteria 1622
67 Ga0207663_10023878 3300025916 Bacteria 3516
68 Ga0207662_10068553 3300025918 Bacteria 2142
69 Ga0207657_10040888 3300025919 Bacteria 4105
70 Ga0207657_10069264 3300025919 Bacteria 2994
71 Ga0207681_10074173 3300025923 Bacteria 2383
72 Ga0207664_10015922 3300025929 Bacteria 5476
73 Ga0207644_10006177 3300025931 Bacteria 7811
74 Ga0207706_10021451 3300025933 Bacteria 5801
75 Ga0207706_10048119 3300025933 Bacteria 3772
76 Ga0207686_10009846 3300025934 Bacteria 5196
77 Ga0207686_10021887 3300025934 Bacteria 3675
78 Ga0207709_10000373 3300025935 Bacteria 45160
79 Ga0207670_10169890 3300025936 Bacteria 1634
80 Ga0207665_10007481 3300025939 Bacteria 7218
81 Ga0207711_10092296 3300025941 Bacteria 2664
82 Ga0207689_10018662 3300025942 Bacteria 5851
83 Ga0207689_10071285 3300025942 Bacteria 2854
84 Ga0207689_10129982 3300025942 Bacteria 2072
85 Ga0207661_10112052 3300025944 Bacteria 2309
86 Ga0207677_10024017 3300026023 Bacteria 3778
87 Ga0207678_10094460 3300026067 Bacteria 2555
88 Ga0207708_10029659 3300026075 Bacteria 4146
89 Ga0207702_10112941 3300026078 Bacteria 2419
90 Ga0207702_10151896 3300026078 Bacteria 2107
91 Ga0207674_10096012 3300026116 Bacteria 2950
92 Ga0207675_100009797 3300026118 Bacteria 8969
93 Ga0207675_100081113 3300026118 Bacteria 3041
94 Ga0207698_10016464 3300026142 Bacteria 4984
95 Ga0268266_10004586 3300028379 Bacteria 13196
96 Ga0268264_10007082 3300028381 Bacteria 9397
97 Ga0268264_10039663 3300028381 Bacteria 3891
98 Ga0307515_10165168 3300028794 Bacteria 2235
99 Ga0316177_1221514 3300030731 Bacteria 5950
100 Ga0307513_10002844 3300031456 Bacteria 23699
101 Ga0307513_10027036 3300031456 Bacteria 6596
102 Ga0307513_10172797 3300031456 Bacteria 2036
103 Ga0307509_10001372 3300031507 Bacteria 41271
104 Ga0307518_10000036 3300031838 Bacteria 91114
105 Ga0307416_100260323 3300032002 Bacteria 1695
106 Ga0373931_0019610 3300035691 Bacteria 3377
107 Ga0395899_0004957 3300037312 Bacteria 10358
108 Ga0395900_0049206 3300037418 Bacteria 4342
109 Ga0395898_0015786 3300037466 Bacteria 7739
110 Ga0436364_0034450 3300037853 Bacteria 166663
111 Ga0436364_0379059 3300037853 Bacteria 3899
112 Ga0436364_1224500 3300037853 Bacteria 9848
113 Ga0436365_1621114 3300039437 Bacteria 79407
114 Ga0436365_1827436 3300039437 Bacteria 19807
115 Ga0439440_0013721 3300042993 Bacteria 1742
116 Ga0466972_0003407 3300044658 Bacteria 7884
117 Ga0466972_0005268 3300044658 Bacteria 6475
118 Ga0466972_0006231 3300044658 Bacteria 5993
119 Ga0466966_0002902 3300044684 Bacteria 11302
120 Ga0466961_0004341 3300044693 Bacteria 8882
121 Ga0466963_0001622 3300044694 Bacteria 12239
122 Ga0466963_0016641 3300044694 Bacteria 4575
123 Ga0466968_0018882 3300044735 Bacteria 2769
124 Ga0466970_0018063 3300044765 Bacteria 3650
125 Ga0466957_0019777 3300044842 Bacteria 3963
126 Ga0466960_0007044 3300044901 Bacteria 4544
127 Ga0466960_0007231 3300044901 Bacteria 4496
128 Ga0466960_0009291 3300044901 Bacteria 4048
129 Ga0466959_0076258 3300045049 Bacteria 2421
130 Ga0466958_0015013 3300045836 Bacteria 4431
131 Ga0466958_0017273 3300045836 Bacteria 4168
132 Ga0466967_0147769 3300045976 Bacteria 2194
133 Ga0495653_0005604 3300046463 Bacteria 10244
134 Ga0495653_0102849 3300046463 Bacteria 2067
135 Ga0495665_0014844 3300046531 Bacteria 4194
136 Ga0495609_0035749 3300046538 Bacteria 2247
137 Ga0495668_0013748 3300046616 Bacteria 4763
138 Ga0495593_0071228 3300047673 Bacteria 1805
139 Ga0496100_0000282 3300048903 Bacteria 25777
140 Ga0496100_0058841 3300048903 Bacteria 2523
141 Ga0496100_0092438 3300048903 Bacteria 2067
142 Ga0496101_0010538 3300048904 Bacteria 6106
143 Ga0496101_0016950 3300048904 Bacteria 4932
144 Ga0496101_0040698 3300048904 Bacteria 3310
145 Ga0496102_0000155 3300048905 Bacteria 92990
146 Ga0496103_0000202 3300048906 Bacteria 59622
147 Ga0496105_0030923 3300048908 Bacteria 4388
148 Ga0496105_0158973 3300048908 Bacteria 1855
149 Ga0496106_0017884 3300048909 Bacteria 5242
150 Ga0496107_0023530 3300048910 Bacteria 4355
151 Ga0496108_0001944 3300048911 Bacteria 16551
152 Ga0496109_0020865 3300048912 Bacteria 5790
153 Ga0496109_0187820 3300048912 Bacteria 1941
154 Ga0496111_0015321 3300048914 Bacteria 5261
155 Ga0496112_0038509 3300048915 Bacteria 4669
156 Ga0496113_0189819 3300048916 Bacteria 1631
157 Ga0496114_0011052 3300048917 Bacteria 7202
158 Ga0496116_0000539 3300048919 Bacteria 50894
159 Ga0496117_0000747 3300048920 Bacteria 51180
160 Ga0496117_0001654 3300048920 Bacteria 31298
161 Ga0496117_0057606 3300048920 Bacteria 2697
162 Ga0496118_0000067 3300048921 Bacteria 207219
163 Ga0496118_0000089 3300048921 Bacteria 175942
164 Ga0496118_0000265 3300048921 Bacteria 91869
165 Ga0496119_0001023 3300048922 Bacteria 35834
166 Ga0496119_0003731 3300048922 Bacteria 15600
167 Ga0496119_0020787 3300048922 Bacteria 4769
168 Ga0496120_0026257 3300048923 Bacteria 3598
169 Ga0496120_0052284 3300048923 Bacteria 2327
170 Ga0496122_0000756 3300048925 Bacteria 62664
171 Ga0496122_0002352 3300048925 Bacteria 27214
172 Ga0496123_0000172 3300048926 Bacteria 130598
173 Ga0496123_0004086 3300048926 Bacteria 15707
174 Ga0496123_0010940 3300048926 Bacteria 7938
175 Ga0496123_0088516 3300048926 Bacteria 1849
176 Ga0496124_0000037 3300048927 Bacteria 317430
177 Ga0496124_0001516 3300048927 Bacteria 33813
178 Ga0496124_0007080 3300048927 Bacteria 12017
179 Ga0496124_0012419 3300048927 Bacteria 8410
180 Ga0496125_0002673 3300048928 Bacteria 22769
181 Ga0496125_0022024 3300048928 Bacteria 5925
182 Ga0496126_0000381 3300048929 Bacteria 91810
183 Ga0501318_001100 3300049534 Bacteria 2010
184 Ga0501032_0003675 3300049569 Bacteria 11657
185 Ga0501034_0012635 3300049571 Bacteria 8712
186 Ga0501034_0128196 3300049571 Bacteria 2522
187 Ga0501036_0151419 3300049572 Bacteria 1957
188 Ga0501037_0050649 3300049573 Bacteria 3038
189 Ga0501043_0020883 3300049579 Bacteria 5136
190 Ga0501047_0005838 3300049581 Bacteria 11584
191 Ga0501047_0075785 3300049581 Bacteria 3237
192 Ga0501067_0033313 3300049583 Bacteria 2858
193 Ga0501069_0008390 3300049585 Bacteria 5428
194 Ga0501070_0002067 3300049586 Bacteria 17624
195 Ga0501083_0083707 3300049744 Bacteria 2113
196 Ga0501035_0001193 3300049822 Bacteria 27068
197 Ga0501044_0000320 3300049823 Bacteria 60627
198 Ga0501044_0003141 3300049823 Bacteria 18689
199 nmdc:mga00v17_1363_c1 3300050491 Bacteria 12789
200 nmdc:mga00v17_4469_c1 3300050491 Bacteria 7282
201 nmdc:mga0sz30_542_c1 3300050516 Bacteria 14091
202 Ga0500643_000176 3300053087 Bacteria 63098
203 Ga0500643_002453 3300053087 Bacteria 9585
204 Ga0500650_0039082 3300053098 Bacteria 2186
205 Ga0500559_0005733 3300053136 Bacteria 5674
206 Ga0500573_0000013 3300053140 Bacteria 196637
207 Ga0500573_0006954 3300053140 Bacteria 6144
208 Ga0500573_0012776 3300053140 Bacteria 4720
209 Ga0500573_0015136 3300053140 Bacteria 4368
210 Ga0500573_0033161 3300053140 Bacteria 2981
211 2899374250 2899370129 Bacteria 6781179
212 2552110873 2551306166 Bacteria 9731570
213 2566993617 2565956761 Bacteria 6601618
214 2583148780 2582580736 Bacteria 5325865
215 2586058122 2585427649 Bacteria 9053857
216 2644458269 2643221681 Bacteria 3707866
217 2644538806 2643221697 Bacteria 3575694
218 2645722425 2643221961 Bacteria 3919167
219 2645725398 2643221962 Bacteria 3874254
220 2671834657 2671180195 Bacteria 9757215
221 2738887502 2738541308 Bacteria 7020677
222 2739202761 2738543005 Bacteria 5278128
223 2739236805 2738543011 Bacteria 5731169
224 2739363122 2738543034 Bacteria 6084756
225 2753302188 2751185788 Bacteria 4541048
226 2774852813 2773857922 Bacteria 9757215
227 2784470996 2784132109 Bacteria 3141763
228 2808902677 2808606372 Bacteria 4649509
229 2812363723 2811994880 Bacteria 4147780
230 2812483340 2811994917 Bacteria 7761064
231 2842892282 2842888712 Bacteria 4279094
232 2852679402 2852677369 Bacteria 3768884
233 2857733491 2857729791 Bacteria 4040535
234 2857736682 2857733635 Bacteria 3532004
235 2862511123 2862507626 Bacteria 9425308
236 2866618001 2866612099 Bacteria 7543886
237 2870623718 2870622029 Bacteria 3643329
238 2884997764 2884994152 Bacteria 4492978
239 2889305698 2889300758 Bacteria 5690814
240 2904432690 2904430863 Bacteria 3486923
241 2904541637 2904535858 Bacteria 6308016
242 2904773336 2904770941 Bacteria 5580202
243 2909074737 2909074476 Bacteria 3436050
244 2915363820 2915358134 Bacteria 6050864
245 2915768303 2915768154 Bacteria 8424322
246 2917739778 2917736166 Bacteria 9690793
247 2919040803 2919039151 Bacteria 3391018
248 2919043873 2919042368 Bacteria 3905917
249 2919052026 2919051321 Bacteria 4210889
250 2922559986 2922554459 Bacteria 6683962
251 2928105143 2928104781 Bacteria 3877447
252 2928124710 2928121344 Bacteria 3972376
253 2928143023 2928142448 Bacteria 5288925
254 2939658154 2939657138 Bacteria 3740283
255 2939743833 2939743619 Bacteria 5762299
256 2946005727 2946003308 Bacteria 3857229
257 2966925077 2966924647 Bacteria 3268643
258 2974316163 2974315732 Bacteria 4602776
259 2984524325 2984523437 Bacteria 4508481
260 2984554328 2984551494 Bacteria 3877562
261 2984592244 2984592036 Bacteria 3670284
262 3006398346 3006393351 Bacteria 6615579
263 3006497051 3006493962 Bacteria 8825450
264 8002813757 8002811521 Bacteria 2942897
265 8047711380 8047710418 Bacteria 11023148
266 8054474078 8054472261 Bacteria 7464355
267 8055175565 8055172936 Bacteria 9305943
268 JGI24739J22299_10030648
269 JGI24748J21848_1001084
270 JGI24749J21850_1004035
271 JGI24744J21845_10013035
272 JGI24034J26672_10001860
273 Ga0007423J48922_100726
274 Ga0006558J51389_1024016
275 Ga0006562J51391_1003403
276 Ga0055539_1000035
277 Ga0058859_10055097
278 Ga0058860_10067477
279 Ga0070683_100126948
280 Ga0068868_100124279
281 Ga0070687_100026944
282 Ga0070661_100060042
283 Ga0070668_100033804
284 Ga0070675_100112959
285 Ga0070671_100008134
286 Ga0070674_100057006
287 Ga0070673_100123522
288 Ga0070709_10021375
289 Ga0070713_100065977
290 Ga0070710_10000317
291 Ga0070700_100050857
292 Ga0070700_100106567
293 Ga0070708_100227580
294 Ga0070663_100077736
295 Ga0070663_100087681
296 Ga0070678_100027628
297 Ga0070662_100047532
298 Ga0070685_10033708
299 Ga0070665_100012179
300 Ga0070665_100206829
301 Ga0070664_100156263
302 Ga0068857_100065436
303 Ga0068854_100030865
304 Ga0068860_100010061
305 Ga0068860_100054760
306 Ga0075364_10018020
307 Ga0070715_10004315
308 Ga0075362_10034099
309 Ga0075369_10000499
310 Ga0097621_100046731
311 Ga0075370_10057473
312 Ga0105250_10053275
313 Ga0105243_10017633
314 Ga0105241_10027992
315 Ga0105238_10244780
316 Ga0105239_10090405
317 Ga0157369_10093741
318 Ga0157374_10020342
319 Ga0163162_10216940
320 Ga0157375_10065595
321 Ga0157375_10107812
322 Ga0157377_10050166
323 Ga0157376_10123456
324 Ga0213876_10000967
325 Ga0213875_10000422
326 Ga0213875_10007691
327 Ga0207653_10017573
328 Ga0207682_10055347
329 Ga0207688_10005648
330 Ga0207688_10032327
331 Ga0207688_10090778
332 Ga0207643_10019589
333 Ga0207693_10188888
334 Ga0207663_10023878
335 Ga0207662_10068553
336 Ga0207657_10040888
337 Ga0207657_10069264
338 Ga0207681_10074173
339 Ga0207664_10015922
340 Ga0207644_10006177
341 Ga0207706_10021451
342 Ga0207706_10048119
343 Ga0207686_10009846
344 Ga0207686_10021887
345 Ga0207709_10000373
346 Ga0207670_10169890
347 Ga0207665_10007481
348 Ga0207711_10092296
349 Ga0207689_10018662
350 Ga0207689_10071285
351 Ga0207689_10129982
352 Ga0207661_10112052
353 Ga0207677_10024017
354 Ga0207678_10094460
355 Ga0207708_10029659
356 Ga0207702_10112941
357 Ga0207702_10151896
358 Ga0207674_10096012
359 Ga0207675_100009797
360 Ga0207675_100081113
361 Ga0207698_10016464
362 Ga0268266_10004586
363 Ga0268264_10007082
364 Ga0268264_10039663
365 Ga0307515_10165168
366 Ga0316177_1221514
367 Ga0307513_10002844
368 Ga0307513_10027036
369 Ga0307513_10172797
370 Ga0307509_10001372
371 Ga0307518_10000036
372 Ga0307416_100260323
373 Ga0373931_0019610
374 Ga0395899_0004957
375 Ga0395900_0049206
376 Ga0395898_0015786
377 Ga0436364_0034450
378 Ga0436364_0379059
379 Ga0436364_1224500
380 Ga0436365_1621114
381 Ga0436365_1827436
382 Ga0439440_0013721
383 Ga0466972_0003407
384 Ga0466972_0005268
385 Ga0466972_0006231
386 Ga0466966_0002902
387 Ga0466961_0004341
388 Ga0466963_0001622
389 Ga0466963_0016641
390 Ga0466968_0018882
391 Ga0466970_0018063
392 Ga0466957_0019777
393 Ga0466960_0007044
394 Ga0466960_0007231
395 Ga0466960_0009291
396 Ga0466959_0076258
397 Ga0466958_0015013
398 Ga0466958_0017273
399 Ga0466967_0147769
400 Ga0495653_0005604
401 Ga0495653_0102849
402 Ga0495665_0014844
403 Ga0495609_0035749
404 Ga0495668_0013748
405 Ga0495593_0071228
406 Ga0496100_0000282
407 Ga0496100_0058841
408 Ga0496100_0092438
409 Ga0496101_0010538
410 Ga0496101_0016950
411 Ga0496101_0040698
412 Ga0496102_0000155
413 Ga0496103_0000202
414 Ga0496105_0030923
415 Ga0496105_0158973
416 Ga0496106_0017884
417 Ga0496107_0023530
418 Ga0496108_0001944
419 Ga0496109_0020865
420 Ga0496109_0187820
421 Ga0496111_0015321
422 Ga0496112_0038509
423 Ga0496113_0189819
424 Ga0496114_0011052
425 Ga0496116_0000539
426 Ga0496117_0000747
427 Ga0496117_0001654
428 Ga0496117_0057606
429 Ga0496118_0000067
430 Ga0496118_0000089
431 Ga0496118_0000265
432 Ga0496119_0001023
433 Ga0496119_0003731
434 Ga0496119_0020787
435 Ga0496120_0026257
436 Ga0496120_0052284
437 Ga0496122_0000756
438 Ga0496122_0002352
439 Ga0496123_0000172
440 Ga0496123_0004086
441 Ga0496123_0010940
442 Ga0496123_0088516
443 Ga0496124_0000037
444 Ga0496124_0001516
445 Ga0496124_0007080
446 Ga0496124_0012419
447 Ga0496125_0002673
448 Ga0496125_0022024
449 Ga0496126_0000381
450 Ga0501318_001100
451 Ga0501032_0003675
452 Ga0501034_0012635
453 Ga0501034_0128196
454 Ga0501036_0151419
455 Ga0501037_0050649
456 Ga0501043_0020883
457 Ga0501047_0005838
458 Ga0501047_0075785
459 Ga0501067_0033313
460 Ga0501069_0008390
461 Ga0501070_0002067
462 Ga0501083_0083707
463 Ga0501035_0001193
464 Ga0501044_0000320
465 Ga0501044_0003141
466 nmdc:mga00v17_1363_c1
467 nmdc:mga00v17_4469_c1
468 nmdc:mga0sz30_542_c1
469 Ga0500643_000176
470 Ga0500643_002453
471 Ga0500650_0039082
472 Ga0500559_0005733
473 Ga0500573_0000013
474 Ga0500573_0006954
475 Ga0500573_0012776
476 Ga0500573_0015136
477 Ga0500573_0033161
478 2899374250
479 2552110873
480 2566993617
481 2583148780
482 2586058122
483 2644458269
484 2644538806
485 2645722425
486 2645725398
487 2671834657
488 2738887502
489 2739202761
490 2739236805
491 2739363122
492 2753302188
493 2774852813
494 2784470996
495 2808902677
496 2812363723
497 2812483340
498 2842892282
499 2852679402
500 2857733491
501 2857736682
502 2862511123
503 2866618001
504 2870623718
505 2884997764
506 2889305698
507 2904432690
508 2904541637
509 2904773336
510 2909074737
511 2915363820
512 2915768303
513 2917739778
514 2919040803
515 2919043873
516 2919052026
517 2922559986
518 2928105143
519 2928124710
520 2928143023
521 2939658154
522 2939743833
523 2946005727
524 2966925077
525 2974316163
526 2984524325
527 2984554328
528 2984592244
529 3006398346
530 3006497051
531 8002813757
532 8047711380
533 8054474078
534 8055175565

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00171

Aldedh

Aldehyde dehydrogenase family

40

506

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
6x9l-assembly1.cif.gz_A crystal structure of aldehyde dehydrogenase c (aldc) mutant (c291a) from pseudomonas syringae in complexed with nad+ and octanal 0.9313 20 476
4it9-assembly1.cif.gz_B structure of bacterial enzyme 0.9294 37 476
4go3-assembly4.cif.gz_E crystal structure of pnpe from pseudomonas sp. wbc-3 0.9289 19 476
4v3f-assembly1.cif.gz_A crystal structure of betaine aldehyde dehydrogenase from spinach showing a thiohemiacetal with betaine aldehyde 0.9271 18 476
1zum-assembly3.cif.gz_I human mitochondrial aldehyde dehydrogenase asian variant, aldh2*2, apo form 0.9265 20 473
ID Description Score Start End Superfamily
af_P9WNY1_267_462_3.40.309.10 Alpha Beta;3-Layer(aba) Sandwich;Aldehyde Dehydrogenase; Chain A, domain 2;Aldehyde Dehydrogenase; Chain A, domain 2 0.9813 267 462 3.40.309.10
af_P9WNY1_267_462_3.40.309.10 Alpha Beta;3-Layer(aba) Sandwich;Aldehyde Dehydrogenase; Chain A, domain 2;Aldehyde Dehydrogenase; Chain A, domain 2 0.9764 267 462 3.40.309.10
af_P9WNY1_18_266_3.40.605.10 Alpha Beta;3-Layer(aba) Sandwich;Aldehyde Dehydrogenase; Chain A, domain 1;Aldehyde Dehydrogenase; Chain A, domain 1 0.9608 19 266 3.40.605.10
af_P9WNY1_18_266_3.40.605.10 Alpha Beta;3-Layer(aba) Sandwich;Aldehyde Dehydrogenase; Chain A, domain 1;Aldehyde Dehydrogenase; Chain A, domain 1 0.9532 19 266 3.40.605.10
af_P37685_40_498_1.10.520.10 Mainly Alpha;Orthogonal Bundle;Peroxidase; domain 1; 0.9487 35 489 1.10.520.10
ID Description Score Start End GO Terms
AF-A0A536V6T7-F1-model_v4 Aldehyde dehydrogenase family protein 0.9853 2 128 GO:0016491
AF-A0A3B9AAN8-F1-model_v4 Aldehyde dehydrogenase 0.984 1 124 GO:0016491
AF-A0A3B9AAN8-F1-model_v4 Aldehyde dehydrogenase 0.9675 1 124 GO:0016491
AF-A0A2T9ULJ6-F1-model_v4 Aldehyde dehydrogenase 0.9665 302 478 GO:0016620
AF-A0A436REQ4-F1-model_v4 Aldehyde dehydrogenase family protein 0.9637 16 391 GO:0016620

Map