F371278

General Info

Members Datasets Scaffolds Average Seq Length
262 138 261 486

Family's Representative Sequence

Representative Sequence 3300042876|Ga0451577_0064495|Ga0451577_0064495_1514_3154
Length 546
Sequence VEVLWSVEACAQATRGAGSPVQITEILWQNDVAAIQLELRKNCAFSRACTGRPLSFILRHSMTRFNNKILFVGYGAVAECTLPILFKHLKVAPENITVMDFEDRSEKLKKWTAKGVRFVRDRVTEKNMGALLGKYVGAGDLIIDLAWNIDACEILDWCHRKGVLYVNTSTELWDPYAVGPKQHPTEKTLYWRHMNVRRMMAQWKTKGPTAVLEHGANPGLISHFTKQGLLDIAAASLADRKFKGKKAELIGELAQAQAWNHLAHQLGVKVIHCSERDTQITNKPKQVDEFVNTWSIEGFREEGQTTAEMGWGTHEKELPAHAFKHKDGPKNQICLARMGMETWVRTWVPNYTVRGMVVRHGEAFTISDHLTVWEKGKAVYRPTVHYAYCPSDVAIASLNEMRGYDYKLNDNQRIMNDEITSGSDILGALLMGHPYQSWWTGSDLSIEESRRLVPHQNATTMQVAISVVAATAWMIENPEMGVVVPDDLPHEFVLGIARPYLGKFISTPSDWTPLKNYRNPFPGYNKPDFDRKDPWQFKNFLVKDGE

Samples

Sample ID Description Type Environment
1 2511231003 Herbaspirillum sp. CF444 Isolate Rhizosphere
2 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
3 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
4 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
10 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
11 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
12 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
13 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
14 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
15 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
19 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
22 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
23 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
24 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
25 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
26 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
27 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
30 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
31 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
32 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
33 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
35 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
37 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
38 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
39 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
40 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
41 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
42 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
43 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
44 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
60 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
61 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
62 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
63 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
64 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
65 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
66 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
67 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
68 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
69 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
70 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
71 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
72 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
73 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
74 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
75 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
76 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
77 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
78 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
79 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
80 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
81 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
82 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
83 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
84 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
85 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
86 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
87 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
88 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
89 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
90 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
91 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
92 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
93 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
94 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
95 3300046475 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL1_31_22 rhizosphere Metagenome Rhizosphere
96 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
97 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
98 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
99 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
100 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
101 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
102 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
103 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
104 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
105 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
106 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
107 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
115 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
116 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
119 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
120 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
121 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
122 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
123 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
124 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
125 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
126 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
128 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
129 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
130 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
131 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
132 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
133 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
134 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
135 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
136 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
137 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
138 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.62
Metatranscriptomes 0
Isolates 0.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.53
Nodule 0
Rhizoplane 1.91
Rhizosphere 95.8
Stem 0
Stem Tuber 0
Unclassified 0.76

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10198361 3300003320 Bacteria 3280
2 rootL2_10234125 3300003322 Bacteria 2306
3 JGI25405J52794_10001030 3300003911 Unclassified 4428
4 Ga0070683_100041015 3300005329 Bacteria 4257
5 Ga0070690_100125590 3300005330 Unclassified 1727
6 Ga0068868_100008497 3300005338 Bacteria 7351
7 Ga0070661_100034158 3300005344 Unclassified 3688
8 Ga0070674_100009935 3300005356 Bacteria 5729
9 Ga0070673_100046763 3300005364 Bacteria 3363
10 Ga0070713_100002845 3300005436 Bacteria 11319
11 Ga0070678_100183096 3300005456 Unclassified 1716
12 Ga0070698_100056099 3300005471 Bacteria 3992
13 Ga0070699_100003190 3300005518 Bacteria 14504
14 Ga0070679_100012069 3300005530 Bacteria 8250
15 Ga0070665_100009673 3300005548 Bacteria 9746
16 Ga0068855_100036753 3300005563 Bacteria 5827
17 Ga0070664_100172822 3300005564 Unclassified 1917
18 Ga0068856_100008605 3300005614 Bacteria 9923
19 Ga0068856_100078997 3300005614 Bacteria 3262
20 Ga0068859_100120021 3300005617 Unclassified 2696
21 Ga0068863_100141299 3300005841 Bacteria 2301
22 Ga0068858_100065791 3300005842 Bacteria 3355
23 Ga0081455_10001916 3300005937 Bacteria 24993
24 Ga0081455_10002480 3300005937 Bacteria 21934
25 Ga0075365_10039947 3300006038 Bacteria 3058
26 Ga0075364_10029736 3300006051 Bacteria 3505
27 Ga0097621_100016058 3300006237 Bacteria 5650
28 Ga0097621_100048658 3300006237 Bacteria 3441
29 Ga0068871_100001852 3300006358 Bacteria 14304
30 Ga0068871_100013735 3300006358 Bacteria 6021
31 Ga0075428_100000571 3300006844 Bacteria 37558
32 Ga0075433_10021406 3300006852 Bacteria 5422
33 Ga0075434_100319325 3300006871 Bacteria 1573
34 Ga0075429_100011083 3300006880 Bacteria 7803
35 Ga0097620_100120018 3300006931 Unclassified 2696
36 Ga0111539_10003011 3300009094 Bacteria 22347
37 Ga0111539_10030084 3300009094 Bacteria 6604
38 Ga0105245_10037364 3300009098 Bacteria 4317
39 Ga0114129_10078338 3300009147 Unclassified 4597
40 Ga0105242_10013666 3300009176 Bacteria 6279
41 Ga0105242_10081123 3300009176 Bacteria 2712
42 Ga0105248_10144956 3300009177 Unclassified 2680
43 Ga0105248_10306799 3300009177 Bacteria 1787
44 Ga0105238_10066477 3300009551 Bacteria 3607
45 Ga0157369_10041240 3300013105 Bacteria 5039
46 Ga0157374_10002428 3300013296 Bacteria 15712
47 Ga0157375_10308855 3300013308 Bacteria 1746
48 Ga0157376_10007398 3300014969 Bacteria 7834
49 Ga0213872_10043496 3300021361 Bacteria 2047
50 Ga0207649_10024783 3300025920 Unclassified 3491
51 Ga0207652_10010883 3300025921 Bacteria 7331
52 Ga0207694_10041394 3300025924 Bacteria 3550
53 Ga0207687_10027532 3300025927 Bacteria 3815
54 Ga0207700_10008167 3300025928 Bacteria 6463
55 Ga0207686_10087540 3300025934 Bacteria 2049
56 Ga0207709_10097030 3300025935 Unclassified 1940
57 Ga0207691_10051782 3300025940 Bacteria 3752
58 Ga0207711_10130233 3300025941 Unclassified 2255
59 Ga0207679_10132372 3300025945 Unclassified 2003
60 Ga0207667_10019098 3300025949 Bacteria 7663
61 Ga0207703_10059589 3300026035 Bacteria 3118
62 Ga0207639_10069508 3300026041 Bacteria 2748
63 Ga0207702_10003246 3300026078 Bacteria 15023
64 Ga0207702_10038982 3300026078 Unclassified 3980
65 Ga0207683_10204967 3300026121 Unclassified 1793
66 Ga0207428_10000834 3300027907 Bacteria 34716
67 Ga0207428_10002313 3300027907 Bacteria 19082
68 Ga0265337_1000801 3300028556 Bacteria 16558
69 Ga0265337_1001206 3300028556 Bacteria 13155
70 Ga0265337_1001848 3300028556 Bacteria 10130
71 Ga0265337_1017633 3300028556 Bacteria 2285
72 Ga0265326_10003754 3300028558 Bacteria 4955
73 Ga0265319_1000076 3300028563 Bacteria 75994
74 Ga0265319_1001255 3300028563 Bacteria 15451
75 Ga0265319_1003593 3300028563 Bacteria 8029
76 Ga0265319_1004195 3300028563 Bacteria 7211
77 Ga0265319_1006050 3300028563 Bacteria 5678
78 Ga0265319_1006801 3300028563 Bacteria 5234
79 Ga0265319_1010679 3300028563 Bacteria 3817
80 Ga0265319_1014640 3300028563 Bacteria 3069
81 Ga0265334_10014326 3300028573 Bacteria 3306
82 Ga0265334_10041493 3300028573 Bacteria 1799
83 Ga0265318_10000003 3300028577 Bacteria 333722
84 Ga0265318_10000902 3300028577 Bacteria 19351
85 Ga0265318_10001454 3300028577 Bacteria 13924
86 Ga0265318_10002464 3300028577 Bacteria 9888
87 Ga0265318_10004824 3300028577 Bacteria 6450
88 Ga0265318_10024362 3300028577 Bacteria 2400
89 Ga0265318_10032396 3300028577 Bacteria 2023
90 Ga0265323_10000121 3300028653 Bacteria 44525
91 Ga0265323_10001124 3300028653 Bacteria 13805
92 Ga0265323_10003848 3300028653 Bacteria 6542
93 Ga0265323_10010828 3300028653 Bacteria 3693
94 Ga0265322_10000456 3300028654 Bacteria 16379
95 Ga0265322_10000458 3300028654 Bacteria 16347
96 Ga0265336_10003112 3300028666 Bacteria 6598
97 Ga0265336_10005402 3300028666 Bacteria 4718
98 Ga0265338_10000245 3300028800 Bacteria 99446
99 Ga0265338_10003870 3300028800 Bacteria 20738
100 Ga0265338_10006708 3300028800 Bacteria 14545
101 Ga0265338_10007615 3300028800 Bacteria 13368
102 Ga0265338_10008187 3300028800 Bacteria 12743
103 Ga0265338_10015664 3300028800 Bacteria 8307
104 Ga0265338_10038231 3300028800 Archaea 4551
105 Ga0265338_10076806 3300028800 Unclassified 2826
106 Ga0265338_10080307 3300028800 Bacteria 2741
107 Ga0265324_10000274 3300029957 Bacteria 38053
108 Ga0265324_10012441 3300029957 Bacteria 3207
109 Ga0265324_10018541 3300029957 Bacteria 2516
110 Ga0265330_10000291 3300031235 Archaea 36440
111 Ga0265330_10022426 3300031235 Unclassified 2873
112 Ga0265330_10049860 3300031235 Bacteria 1837
113 Ga0265332_10002393 3300031238 Bacteria 9562
114 Ga0265332_10004202 3300031238 Archaea 6816
115 Ga0265320_10000148 3300031240 Bacteria 59382
116 Ga0265320_10001404 3300031240 Bacteria 17499
117 Ga0265320_10002120 3300031240 Bacteria 13942
118 Ga0265320_10005028 3300031240 Bacteria 8566
119 Ga0265320_10009707 3300031240 Bacteria 5778
120 Ga0265320_10059929 3300031240 Bacteria 1818
121 Ga0265325_10000215 3300031241 Bacteria 41177
122 Ga0265325_10017494 3300031241 Bacteria 3982
123 Ga0265340_10002527 3300031247 Bacteria 10392
124 Ga0265340_10010316 3300031247 Bacteria 4997
125 Ga0265340_10011176 3300031247 Bacteria 4782
126 Ga0265339_10000340 3300031249 Bacteria 37848
127 Ga0265331_10000311 3300031250 Bacteria 53260
128 Ga0265327_10000387 3300031251 Bacteria 82859
129 Ga0265327_10000787 3300031251 Bacteria 48927
130 Ga0265327_10001902 3300031251 Bacteria 24122
131 Ga0265327_10002641 3300031251 Bacteria 18474
132 Ga0265327_10005273 3300031251 Bacteria 10880
133 Ga0265327_10014107 3300031251 Bacteria 5249
134 Ga0265327_10031651 3300031251 Bacteria 2969
135 Ga0265316_10000140 3300031344 Bacteria 78636
136 Ga0265316_10000174 3300031344 Bacteria 72573
137 Ga0265316_10007851 3300031344 Bacteria 9988
138 Ga0265316_10011296 3300031344 Bacteria 8066
139 Ga0265316_10019225 3300031344 Bacteria 5850
140 Ga0265316_10032726 3300031344 Bacteria 4241
141 Ga0265316_10033102 3300031344 Bacteria 4213
142 Ga0265316_10040533 3300031344 Archaea 3733
143 Ga0265316_10062262 3300031344 Bacteria 2896
144 Ga0265316_10065483 3300031344 Bacteria 2814
145 Ga0265316_10076235 3300031344 Archaea 2577
146 Ga0265316_10085556 3300031344 Bacteria 2412
147 Ga0265316_10111199 3300031344 Bacteria 2074
148 Ga0265313_10000323 3300031595 Bacteria 52193
149 Ga0265313_10000998 3300031595 Bacteria 27775
150 Ga0265313_10001513 3300031595 Bacteria 21656
151 Ga0265313_10002035 3300031595 Bacteria 18142
152 Ga0265313_10008915 3300031595 Bacteria 6594
153 Ga0265313_10021898 3300031595 Bacteria 3483
154 Ga0265313_10049433 3300031595 Bacteria 2023
155 Ga0265314_10000161 3300031711 Bacteria 101910
156 Ga0265314_10000250 3300031711 Bacteria 79159
157 Ga0265314_10001297 3300031711 Bacteria 28333
158 Ga0265314_10005981 3300031711 Bacteria 10850
159 Ga0265314_10009529 3300031711 Bacteria 8183
160 Ga0265314_10016377 3300031711 Bacteria 5856
161 Ga0265314_10048367 3300031711 Bacteria 2985
162 Ga0265342_10000114 3300031712 Bacteria 88429
163 Ga0265342_10000500 3300031712 Archaea 42089
164 Ga0265342_10012035 3300031712 Bacteria 5875
165 Ga0265342_10016129 3300031712 Archaea 4888
166 Ga0265342_10019859 3300031712 Bacteria 4322
167 Ga0265342_10035703 3300031712 Unclassified 3040
168 Ga0265342_10044923 3300031712 Bacteria 2661
169 Ga0265342_10056310 3300031712 Bacteria 2330
170 Ga0373931_0024740 3300035691 Unclassified 3045
171 Ga0373947_0048039 3300035725 Bacteria 2560
172 Ga0316584_0041301 3300036712 Bacteria 3438
173 Ga0373925_0000015 3300037068 Bacteria 178076
174 Ga0395905_0087728 3300037471 Bacteria 2917
175 Ga0436361_0107642 3300039447 Bacteria 2351
176 Ga0436361_1189265 3300039447 Unclassified 2121
177 Ga0439444_0005009 3300042437 Bacteria 1950
178 Ga0451577_0000224 3300042876 Bacteria 116252
179 Ga0451577_0002653 3300042876 Bacteria 20948
180 Ga0451577_0013624 3300042876 Bacteria 7603
181 Ga0451577_0055900 3300042876 Bacteria 3520
182 Ga0451577_0064495 3300042876 Bacteria 3266
183 Ga0451577_0106546 3300042876 Archaea 2506
184 Ga0453683_0000408 3300044673 Bacteria 50274
185 Ga0453683_0080509 3300044673 Bacteria 2040
186 Ga0453684_0000019 3300044712 Bacteria 908702
187 Ga0453684_0000043 3300044712 Archaea 642274
188 Ga0453684_0000060 3300044712 Archaea 492542
189 Ga0453684_0000229 3300044712 Bacteria 241494
190 Ga0453684_0000325 3300044712 Bacteria 200781
191 Ga0453684_0000639 3300044712 Bacteria 126427
192 Ga0453684_0000806 3300044712 Bacteria 106863
193 Ga0453684_0002867 3300044712 Archaea 40479
194 Ga0453684_0006721 3300044712 Bacteria 21683
195 Ga0453684_0007338 3300044712 Bacteria 20358
196 Ga0453684_0014632 3300044712 Bacteria 12523
197 Ga0453684_0017536 3300044712 Archaea 11081
198 Ga0453684_0033061 3300044712 Archaea 7218
199 Ga0453684_0034732 3300044712 Archaea 6988
200 Ga0453684_0058201 3300044712 Archaea 4993
201 Ga0453684_0077274 3300044712 Bacteria 4175
202 Ga0453684_0117404 3300044712 Bacteria 3220
203 Ga0453684_0226011 3300044712 Bacteria 2164
204 Ga0466968_0014390 3300044735 Bacteria 3127
205 Ga0451576_0000269 3300045051 Bacteria 127079
206 Ga0451576_0000485 3300045051 Bacteria 87953
207 Ga0451576_0001167 3300045051 Bacteria 47379
208 Ga0451576_0003502 3300045051 Bacteria 21459
209 Ga0451576_0004242 3300045051 Bacteria 18820
210 Ga0451576_0040080 3300045051 Bacteria 4959
211 Ga0451576_0229092 3300045051 Bacteria 1940
212 Ga0466958_0000030 3300045836 Bacteria 40849
213 Ga0495639_0007936 3300046475 Bacteria 4562
214 Ga0495640_0060677 3300046533 Bacteria 2571
215 Ga0495586_0056612 3300046535 Unclassified 2127
216 Ga0495621_0031671 3300046539 Bacteria 1816
217 Ga0495645_0049723 3300046543 Bacteria 3053
218 Ga0495667_0120653 3300046559 Bacteria 1693
219 Ga0495674_0152781 3300047319 Bacteria 1935
220 Ga0496100_0001556 3300048903 Bacteria 11280
221 Ga0496101_0000139 3300048904 Bacteria 63989
222 Ga0496105_0199141 3300048908 Bacteria 1635
223 Ga0496114_0000577 3300048917 Bacteria 27102
224 Ga0496115_0041572 3300048918 Unclassified 3659
225 Ga0501033_0005836 3300049570 Bacteria 9684
226 Ga0501034_0002479 3300049571 Bacteria 22201
227 Ga0501034_0002603 3300049571 Bacteria 21434
228 Ga0501036_0171121 3300049572 Unclassified 1830
229 Ga0501038_0031797 3300049574 Unclassified 4662
230 Ga0501039_0007640 3300049575 Bacteria 8252
231 Ga0501040_0005354 3300049576 Bacteria 8298
232 Ga0501041_0041428 3300049577 Bacteria 2797
233 Ga0501042_0067180 3300049578 Bacteria 2563
234 Ga0501043_0176152 3300049579 Unclassified 1667
235 Ga0501046_0002765 3300049580 Bacteria 16332
236 Ga0501048_0045242 3300049582 Bacteria 3145
237 Ga0501068_0051805 3300049584 Bacteria 2484
238 Ga0501071_0023267 3300049587 Unclassified 4327
239 Ga0501074_0110804 3300049590 Bacteria 1964
240 Ga0501076_0060745 3300049592 Bacteria 3007
241 Ga0501077_0031914 3300049593 Bacteria 3351
242 Ga0501077_0039695 3300049593 Bacteria 2999
243 Ga0501080_0125701 3300049742 Bacteria 2375
244 Ga0501080_0222173 3300049742 Bacteria 1728
245 Ga0501081_0000345 3300049743 Bacteria 24974
246 Ga0501083_0062841 3300049744 Bacteria 2477
247 Ga0501035_0221124 3300049822 Unclassified 1617
248 Ga0501044_0251837 3300049823 Unclassified 1707
249 Ga0501045_0000841 3300049824 Bacteria 19901
250 nmdc:mga00v17_54_c1 3300050491 Bacteria 72187
251 nmdc:mga0yw44_30426_c1 3300050492 Bacteria 3128
252 nmdc:mga05p37_393639_c1 3300050507 Unclassified 1620
253 nmdc:mga05p37_90955_c1 3300050507 Unclassified 3761
254 nmdc:mga09592_7986_c1 3300050508 Bacteria 8602
255 nmdc:mga08y16_1389_c1 3300050511 Bacteria 24220
256 nmdc:mga08y16_239_c1 3300050511 Bacteria 49206
257 nmdc:mga0a205_9918_c1 3300050515 Bacteria 8735
258 Ga0495619_0153133 3300053085 Bacteria 1591
259 Ga0501084_0015191 3300054114 Bacteria 6384
260 Ga0501082_0001775 3300060353 Bacteria 18973
261 Ga0530510_0035778 3300061734 Bacteria 3579

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300003322 rootL2_10234125 rootL2_102341254 400
2 3300049590 Ga0501074_0110804 Ga0501074_0110804_638_1939 431
3 3300049593 Ga0501077_0039695 Ga0501077_0039695_20_1321 431
4 iso_pu_bacteria 2511231003 2511252172 442
5 3300006038 Ga0075365_10039947 Ga0075365_100399472 448
6 3300006051 Ga0075364_10029736 Ga0075364_100297363 448
7 3300050491 nmdc:mga00v17_54_c1 nmdc:mga00v17_54_c1_69832_71277 448
8 3300050492 nmdc:mga0yw44_30426_c1 nmdc:mga0yw44_30426_c1_817_2262 448
9 3300045836 Ga0466958_0000030 Ga0466958_0000030_4547_6097 458
10 3300035725 Ga0373947_0048039 Ga0373947_0048039_111_1505 461
11 3300044712 Ga0453684_0014632 Ga0453684_0014632_9195_10655 476
12 3300044712 Ga0453684_0077274 Ga0453684_0077274_2076_3527 476
13 3300045051 Ga0451576_0003502 Ga0451576_0003502_11872_13323 476
14 3300046539 Ga0495621_0031671 Ga0495621_0031671_12_1451 477
15 3300044712 Ga0453684_0033061 Ga0453684_0033061_1532_2971 478
16 3300031235 Ga0265330_10000291 Ga0265330_1000029137 479
17 3300031238 Ga0265332_10004202 Ga0265332_100042027 479
18 3300031344 Ga0265316_10040533 Ga0265316_100405333 479
19 3300031344 Ga0265316_10076235 Ga0265316_100762352 479
20 3300031712 Ga0265342_10000500 Ga0265342_100005003 479
21 3300031712 Ga0265342_10016129 Ga0265342_100161292 479
22 3300042876 Ga0451577_0106546 Ga0451577_0106546_49_1491 479
23 3300044712 Ga0453684_0000043 Ga0453684_0000043_424831_426273 479
24 3300044712 Ga0453684_0058201 Ga0453684_0058201_2435_3877 479
25 3300028653 Ga0265323_10003848 Ga0265323_100038483 480
26 3300044712 Ga0453684_0000060 Ga0453684_0000060_176637_178157 480
27 3300044712 Ga0453684_0002867 Ga0453684_0002867_1419_2897 480
28 3300044712 Ga0453684_0017536 Ga0453684_0017536_7961_9406 480
29 3300044712 Ga0453684_0034732 Ga0453684_0034732_2835_4280 480
30 3300049823 Ga0501044_0251837 Ga0501044_0251837_55_1515 481
31 3300031344 Ga0265316_10000140 Ga0265316_1000014082 482
32 3300006852 Ga0075433_10021406 Ga0075433_100214063 483
33 3300009147 Ga0114129_10078338 Ga0114129_100783383 483
34 3300028577 Ga0265318_10000003 Ga0265318_1000000381 483
35 3300029957 Ga0265324_10018541 Ga0265324_100185412 483
36 3300031251 Ga0265327_10014107 Ga0265327_100141078 483
37 3300031251 Ga0265327_10031651 Ga0265327_100316512 483
38 3300031344 Ga0265316_10085556 Ga0265316_100855562 483
39 3300031595 Ga0265313_10021898 Ga0265313_100218982 483
40 3300031711 Ga0265314_10000250 Ga0265314_1000025055 483
41 3300044712 Ga0453684_0000019 Ga0453684_0000019_648002_649453 483
42 3300044712 Ga0453684_0000639 Ga0453684_0000639_59077_60582 483
43 3300044712 Ga0453684_0006721 Ga0453684_0006721_2332_3783 483
44 3300049570 Ga0501033_0005836 Ga0501033_0005836_5726_7180 483
45 3300049580 Ga0501046_0002765 Ga0501046_0002765_12269_13768 483
46 3300049582 Ga0501048_0045242 Ga0501048_0045242_710_2209 483
47 3300049742 Ga0501080_0125701 Ga0501080_0125701_271_1725 483
48 3300050507 nmdc:mga05p37_393639_c1 nmdc:mga05p37_393639_c1_106_1596 483
49 3300050507 nmdc:mga05p37_90955_c1 nmdc:mga05p37_90955_c1_1740_3230 483
50 3300050515 nmdc:mga0a205_9918_c1 nmdc:mga0a205_9918_c1_5533_7023 483
51 3300005617 Ga0068859_100120021 Ga0068859_1001200212 484
52 3300006931 Ga0097620_100120018 Ga0097620_1001200182 484
53 3300028556 Ga0265337_1000801 Ga0265337_10008015 484
54 3300028556 Ga0265337_1017633 Ga0265337_10176331 484
55 3300028558 Ga0265326_10003754 Ga0265326_100037544 484
56 3300028563 Ga0265319_1004195 Ga0265319_10041953 484
57 3300028563 Ga0265319_1006801 Ga0265319_10068012 484
58 3300028563 Ga0265319_1014640 Ga0265319_10146401 484
59 3300028577 Ga0265318_10000902 Ga0265318_100009026 484
60 3300028577 Ga0265318_10001454 Ga0265318_100014544 484
61 3300028577 Ga0265318_10004824 Ga0265318_100048245 484
62 3300028666 Ga0265336_10003112 Ga0265336_100031122 484
63 3300028800 Ga0265338_10000245 Ga0265338_1000024538 484
64 3300028800 Ga0265338_10003870 Ga0265338_1000387013 484
65 3300029957 Ga0265324_10000274 Ga0265324_1000027419 484
66 3300029957 Ga0265324_10012441 Ga0265324_100124412 484
67 3300031240 Ga0265320_10001404 Ga0265320_1000140416 484
68 3300031240 Ga0265320_10005028 Ga0265320_100050285 484
69 3300031241 Ga0265325_10017494 Ga0265325_100174945 484
70 3300031247 Ga0265340_10011176 Ga0265340_100111765 484
71 3300031251 Ga0265327_10002641 Ga0265327_1000264117 484
72 3300031344 Ga0265316_10019225 Ga0265316_100192255 484
73 3300031344 Ga0265316_10033102 Ga0265316_100331024 484
74 3300031344 Ga0265316_10062262 Ga0265316_100622622 484
75 3300031595 Ga0265313_10001513 Ga0265313_100015137 484
76 3300031595 Ga0265313_10008915 Ga0265313_100089158 484
77 3300031595 Ga0265313_10049433 Ga0265313_100494332 484
78 3300031711 Ga0265314_10001297 Ga0265314_100012975 484
79 3300031712 Ga0265342_10012035 Ga0265342_100120352 484
80 3300031712 Ga0265342_10056310 Ga0265342_100563102 484
81 3300035691 Ga0373931_0024740 Ga0373931_0024740_184_1641 484
82 3300037068 Ga0373925_0000015 Ga0373925_0000015_72840_74297 484
83 3300046533 Ga0495640_0060677 Ga0495640_0060677_293_1756 484
84 3300003911 JGI25405J52794_10001030 JGI25405J52794_100010301 485
85 3300005329 Ga0070683_100041015 Ga0070683_1000410153 485
86 3300005330 Ga0070690_100125590 Ga0070690_1001255901 485
87 3300005338 Ga0068868_100008497 Ga0068868_1000084978 485
88 3300005344 Ga0070661_100034158 Ga0070661_1000341582 485
89 3300005356 Ga0070674_100009935 Ga0070674_1000099352 485
90 3300005364 Ga0070673_100046763 Ga0070673_1000467632 485
91 3300005436 Ga0070713_100002845 Ga0070713_1000028452 485
92 3300005456 Ga0070678_100183096 Ga0070678_1001830961 485
93 3300005471 Ga0070698_100056099 Ga0070698_1000560992 485
94 3300005518 Ga0070699_100003190 Ga0070699_1000031906 485
95 3300005530 Ga0070679_100012069 Ga0070679_1000120692 485
96 3300005548 Ga0070665_100009673 Ga0070665_1000096738 485
97 3300005563 Ga0068855_100036753 Ga0068855_1000367531 485
98 3300005564 Ga0070664_100172822 Ga0070664_1001728222 485
99 3300005614 Ga0068856_100008605 Ga0068856_1000086056 485
100 3300005614 Ga0068856_100078997 Ga0068856_1000789972 485
101 3300005841 Ga0068863_100141299 Ga0068863_1001412992 485
102 3300005842 Ga0068858_100065791 Ga0068858_1000657913 485
103 3300005937 Ga0081455_10001916 Ga0081455_1000191627 485
104 3300005937 Ga0081455_10002480 Ga0081455_100024807 485
105 3300006237 Ga0097621_100016058 Ga0097621_1000160582 485
106 3300006237 Ga0097621_100048658 Ga0097621_1000486582 485
107 3300006358 Ga0068871_100001852 Ga0068871_1000018522 485
108 3300006358 Ga0068871_100013735 Ga0068871_1000137356 485
109 3300006844 Ga0075428_100000571 Ga0075428_1000005716 485
110 3300006871 Ga0075434_100319325 Ga0075434_1003193251 485
111 3300006880 Ga0075429_100011083 Ga0075429_1000110833 485
112 3300009094 Ga0111539_10003011 Ga0111539_100030115 485
113 3300009094 Ga0111539_10030084 Ga0111539_100300841 485
114 3300009098 Ga0105245_10037364 Ga0105245_100373642 485
115 3300009176 Ga0105242_10013666 Ga0105242_100136663 485
116 3300009176 Ga0105242_10081123 Ga0105242_100811232 485
117 3300009177 Ga0105248_10144956 Ga0105248_101449562 485
118 3300009177 Ga0105248_10306799 Ga0105248_103067991 485
119 3300009551 Ga0105238_10066477 Ga0105238_100664773 485
120 3300013105 Ga0157369_10041240 Ga0157369_100412403 485
121 3300013296 Ga0157374_10002428 Ga0157374_1000242812 485
122 3300013308 Ga0157375_10308855 Ga0157375_103088552 485
123 3300014969 Ga0157376_10007398 Ga0157376_100073983 485
124 3300021361 Ga0213872_10043496 Ga0213872_100434961 485
125 3300025920 Ga0207649_10024783 Ga0207649_100247834 485
126 3300025921 Ga0207652_10010883 Ga0207652_100108833 485
127 3300025924 Ga0207694_10041394 Ga0207694_100413942 485
128 3300025927 Ga0207687_10027532 Ga0207687_100275322 485
129 3300025928 Ga0207700_10008167 Ga0207700_100081679 485
130 3300025934 Ga0207686_10087540 Ga0207686_100875402 485
131 3300025935 Ga0207709_10097030 Ga0207709_100970302 485
132 3300025940 Ga0207691_10051782 Ga0207691_100517822 485
133 3300025941 Ga0207711_10130233 Ga0207711_101302332 485
134 3300025945 Ga0207679_10132372 Ga0207679_101323722 485
135 3300025949 Ga0207667_10019098 Ga0207667_100190987 485
136 3300026035 Ga0207703_10059589 Ga0207703_100595892 485
137 3300026041 Ga0207639_10069508 Ga0207639_100695082 485
138 3300026078 Ga0207702_10003246 Ga0207702_100032464 485
139 3300026078 Ga0207702_10038982 Ga0207702_100389822 485
140 3300026121 Ga0207683_10204967 Ga0207683_102049672 485
141 3300027907 Ga0207428_10000834 Ga0207428_100008344 485
142 3300027907 Ga0207428_10002313 Ga0207428_100023131 485
143 3300028556 Ga0265337_1001206 Ga0265337_10012062 485
144 3300028556 Ga0265337_1001848 Ga0265337_10018487 485
145 3300028563 Ga0265319_1000076 Ga0265319_10000766 485
146 3300028563 Ga0265319_1001255 Ga0265319_100125515 485
147 3300028563 Ga0265319_1003593 Ga0265319_10035932 485
148 3300028563 Ga0265319_1006050 Ga0265319_10060503 485
149 3300028563 Ga0265319_1010679 Ga0265319_10106792 485
150 3300028573 Ga0265334_10014326 Ga0265334_100143262 485
151 3300028573 Ga0265334_10041493 Ga0265334_100414932 485
152 3300028577 Ga0265318_10002464 Ga0265318_100024647 485
153 3300028577 Ga0265318_10024362 Ga0265318_100243622 485
154 3300028577 Ga0265318_10032396 Ga0265318_100323962 485
155 3300028653 Ga0265323_10000121 Ga0265323_100001214 485
156 3300028653 Ga0265323_10001124 Ga0265323_1000112412 485
157 3300028653 Ga0265323_10010828 Ga0265323_100108283 485
158 3300028654 Ga0265322_10000456 Ga0265322_100004564 485
159 3300028654 Ga0265322_10000458 Ga0265322_1000045811 485
160 3300028666 Ga0265336_10005402 Ga0265336_100054021 485
161 3300028800 Ga0265338_10006708 Ga0265338_100067085 485
162 3300028800 Ga0265338_10007615 Ga0265338_100076152 485
163 3300028800 Ga0265338_10008187 Ga0265338_1000818711 485
164 3300028800 Ga0265338_10015664 Ga0265338_100156646 485
165 3300028800 Ga0265338_10038231 Ga0265338_100382314 485
166 3300028800 Ga0265338_10076806 Ga0265338_100768062 485
167 3300028800 Ga0265338_10080307 Ga0265338_100803072 485
168 3300031235 Ga0265330_10022426 Ga0265330_100224262 485
169 3300031235 Ga0265330_10049860 Ga0265330_100498602 485
170 3300031238 Ga0265332_10002393 Ga0265332_100023935 485
171 3300031240 Ga0265320_10000148 Ga0265320_1000014838 485
172 3300031240 Ga0265320_10002120 Ga0265320_100021205 485
173 3300031240 Ga0265320_10009707 Ga0265320_100097073 485
174 3300031240 Ga0265320_10059929 Ga0265320_100599291 485
175 3300031241 Ga0265325_10000215 Ga0265325_1000021523 485
176 3300031247 Ga0265340_10002527 Ga0265340_100025275 485
177 3300031247 Ga0265340_10010316 Ga0265340_100103163 485
178 3300031249 Ga0265339_10000340 Ga0265339_1000034020 485
179 3300031250 Ga0265331_10000311 Ga0265331_100003118 485
180 3300031251 Ga0265327_10000387 Ga0265327_1000038717 485
181 3300031251 Ga0265327_10000787 Ga0265327_100007873 485
182 3300031251 Ga0265327_10001902 Ga0265327_1000190212 485
183 3300031251 Ga0265327_10005273 Ga0265327_100052739 485
184 3300031344 Ga0265316_10000174 Ga0265316_1000017422 485
185 3300031344 Ga0265316_10007851 Ga0265316_100078515 485
186 3300031344 Ga0265316_10011296 Ga0265316_100112963 485
187 3300031344 Ga0265316_10032726 Ga0265316_100327261 485
188 3300031344 Ga0265316_10065483 Ga0265316_100654832 485
189 3300031344 Ga0265316_10111199 Ga0265316_101111991 485
190 3300031595 Ga0265313_10000323 Ga0265313_1000032334 485
191 3300031595 Ga0265313_10000998 Ga0265313_100009988 485
192 3300031595 Ga0265313_10002035 Ga0265313_100020351 485
193 3300031711 Ga0265314_10000161 Ga0265314_1000016124 485
194 3300031711 Ga0265314_10005981 Ga0265314_100059815 485
195 3300031711 Ga0265314_10009529 Ga0265314_100095294 485
196 3300031711 Ga0265314_10016377 Ga0265314_100163775 485
197 3300031711 Ga0265314_10048367 Ga0265314_100483672 485
198 3300031712 Ga0265342_10000114 Ga0265342_1000011434 485
199 3300031712 Ga0265342_10019859 Ga0265342_100198592 485
200 3300031712 Ga0265342_10035703 Ga0265342_100357032 485
201 3300031712 Ga0265342_10044923 Ga0265342_100449232 485
202 3300036712 Ga0316584_0041301 Ga0316584_0041301_1784_3241 485
203 3300037471 Ga0395905_0087728 Ga0395905_0087728_378_1904 485
204 3300039447 Ga0436361_0107642 Ga0436361_0107642_212_1672 485
205 3300039447 Ga0436361_1189265 Ga0436361_1189265_603_2063 485
206 3300042437 Ga0439444_0005009 Ga0439444_0005009_446_1906 485
207 3300042876 Ga0451577_0000224 Ga0451577_0000224_12436_13893 485
208 3300042876 Ga0451577_0002653 Ga0451577_0002653_211_1671 485
209 3300042876 Ga0451577_0055900 Ga0451577_0055900_233_1777 485
210 3300042876 Ga0451577_0064495 Ga0451577_0064495_1514_3154 485
211 3300044673 Ga0453683_0000408 Ga0453683_0000408_40864_42324 485
212 3300044673 Ga0453683_0080509 Ga0453683_0080509_13_1482 485
213 3300044712 Ga0453684_0000229 Ga0453684_0000229_119574_121031 485
214 3300044712 Ga0453684_0000325 Ga0453684_0000325_153726_155279 485
215 3300044712 Ga0453684_0000806 Ga0453684_0000806_13010_14479 485
216 3300044712 Ga0453684_0007338 Ga0453684_0007338_17270_18727 485
217 3300044712 Ga0453684_0117404 Ga0453684_0117404_414_1871 485
218 3300044712 Ga0453684_0226011 Ga0453684_0226011_512_1969 485
219 3300044735 Ga0466968_0014390 Ga0466968_0014390_1092_2552 485
220 3300045051 Ga0451576_0000269 Ga0451576_0000269_98942_100399 485
221 3300045051 Ga0451576_0000485 Ga0451576_0000485_48808_50265 485
222 3300045051 Ga0451576_0001167 Ga0451576_0001167_7300_8769 485
223 3300045051 Ga0451576_0004242 Ga0451576_0004242_15_1475 485
224 3300045051 Ga0451576_0040080 Ga0451576_0040080_1475_2932 485
225 3300045051 Ga0451576_0229092 Ga0451576_0229092_242_1702 485
226 3300046475 Ga0495639_0007936 Ga0495639_0007936_1431_2891 485
227 3300046535 Ga0495586_0056612 Ga0495586_0056612_30_1523 485
228 3300046543 Ga0495645_0049723 Ga0495645_0049723_957_2420 485
229 3300046559 Ga0495667_0120653 Ga0495667_0120653_211_1671 485
230 3300047319 Ga0495674_0152781 Ga0495674_0152781_150_1643 485
231 3300048903 Ga0496100_0001556 Ga0496100_0001556_5532_6992 485
232 3300048904 Ga0496101_0000139 Ga0496101_0000139_17254_18714 485
233 3300048908 Ga0496105_0199141 Ga0496105_0199141_108_1568 485
234 3300048917 Ga0496114_0000577 Ga0496114_0000577_17246_18706 485
235 3300048918 Ga0496115_0041572 Ga0496115_0041572_2142_3608 485
236 3300049571 Ga0501034_0002479 Ga0501034_0002479_19713_21170 485
237 3300049571 Ga0501034_0002603 Ga0501034_0002603_14415_15872 485
238 3300049572 Ga0501036_0171121 Ga0501036_0171121_185_1654 485
239 3300049574 Ga0501038_0031797 Ga0501038_0031797_2854_4323 485
240 3300049575 Ga0501039_0007640 Ga0501039_0007640_1523_2992 485
241 3300049576 Ga0501040_0005354 Ga0501040_0005354_6748_8217 485
242 3300049577 Ga0501041_0041428 Ga0501041_0041428_68_1537 485
243 3300049578 Ga0501042_0067180 Ga0501042_0067180_1056_2525 485
244 3300049579 Ga0501043_0176152 Ga0501043_0176152_183_1652 485
245 3300049584 Ga0501068_0051805 Ga0501068_0051805_594_2054 485
246 3300049587 Ga0501071_0023267 Ga0501071_0023267_1440_2909 485
247 3300049592 Ga0501076_0060745 Ga0501076_0060745_77_1546 485
248 3300049593 Ga0501077_0031914 Ga0501077_0031914_785_2245 485
249 3300049742 Ga0501080_0222173 Ga0501080_0222173_157_1614 485
250 3300049743 Ga0501081_0000345 Ga0501081_0000345_6142_7611 485
251 3300049744 Ga0501083_0062841 Ga0501083_0062841_991_2448 485
252 3300049822 Ga0501035_0221124 Ga0501035_0221124_56_1525 485
253 3300049824 Ga0501045_0000841 Ga0501045_0000841_16878_18347 485
254 3300050508 nmdc:mga09592_7986_c1 nmdc:mga09592_7986_c1_3540_4997 485
255 3300050511 nmdc:mga08y16_1389_c1 nmdc:mga08y16_1389_c1_10574_12040 485
256 3300050511 nmdc:mga08y16_239_c1 nmdc:mga08y16_239_c1_25088_26545 485
257 3300053085 Ga0495619_0153133 Ga0495619_0153133_80_1540 485
258 3300054114 Ga0501084_0015191 Ga0501084_0015191_832_2301 485
259 3300060353 Ga0501082_0001775 Ga0501082_0001775_54_1523 485
260 3300061734 Ga0530510_0035778 Ga0530510_0035778_1670_3139 485
261 3300042876 Ga0451577_0013624 Ga0451577_0013624_4438_5898 486
262 3300003320 rootH2_10198361 rootH2_101983611 487

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03435

Sacchrp_dh_NADP

Saccharopine dehydrogenase NADP binding domain

69

211

0.98

PF16653

Sacchrp_dh_C

Saccharopine dehydrogenase C-terminal domain

215

507

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
4xr4-assembly1.cif.gz_B crystal structure of the homospermidine synthase (hss) from blastochloris viridis in complex with nad and agmatine 0.9242 3 484
4xq9-assembly1.cif.gz_A crystal structure of the homospermidine synthase (hss) from blastochloris viridis in complex with nad 0.9238 3 484
6s49-assembly1.cif.gz_B crystal structure of the homospermidine synthase (hss) variant e210a from blastochloris viridis in complex with nad 0.9236 3 484
4xqg-assembly1.cif.gz_A crystal structure of the homospermidine synthase (hss) variant e237q from blastochloris viridis in complex with nad. 0.9233 3 484
6s4d-assembly1.cif.gz_B crystal structure of the homospermidine synthase (hss) variant w229f from blastochloris viridis in complex with nad 0.9232 3 485
ID Description Score Start End Superfamily
4tvbB02 Alpha Beta;2-Layer Sandwich;Dihydrodipicolinate Reductase; domain 2;homospermidine synthase like 0.9184 154 485 3.30.360.30
4tvbB02 Alpha Beta;2-Layer Sandwich;Dihydrodipicolinate Reductase; domain 2;homospermidine synthase like 0.9154 154 485 3.30.360.30
2ph5A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8927 2 150 3.40.50.720
4tvbA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8479 3 150 3.40.50.720
4ia6B01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.8038 6 42 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A2M7W441-F1-model_v4 Homospermidine synthase 0.9941 189 451
AF-A0A7C5P0P3-F1-model_v4 Homospermidine synthase 0.9923 1 54
AF-A0A351UJ31-F1-model_v4 Homospermidine synthase 0.9912 1 487
AF-A0A351UJ31-F1-model_v4 Homospermidine synthase 0.9892 1 487
AF-A0A3C1V650-F1-model_v4 Homospermidine synthase 0.9885 1 385

Feature Viewer

pLDDT pTM Quality
93.55 0.93 High
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Predicted Structure (AlphaFold2)

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