F370415

General Info

Members Datasets Scaffolds Average Seq Length
261 145 260 363

Family's Representative Sequence

Representative Sequence 3300028577|Ga0265318_10023204|Ga0265318_100232042
Length 401
Sequence VNSEKRTRVVCGMSGGVDSSATAALLLEQGYEVIGITLKLWPQDCVNRAEDKCCGPQAVTDARAVCHKLDIPYYLIDEAAEFQKHVIQYFADEYKAGRTPNPCVMCNQNLKFGRLIDRARQLGADFIATGHFARIEHLPAPSTNPALVGTSRCDVLAREAAGETIAPLNVAWTAQRAVPTPGRYLLKRGRDLKKDQSYFLFSLRQDQLARALFPLGEKTKSDTREVARHCNLKTADKEESMEICFVPDNNYGGFLQSANLVQKHRGEITDVHGHVLGHHDGIAFYTIGQRKGLGITTPKPVYVVELDAENNRVVVGDESALDRDEFTASNCNWIPFDKLTGPVEVTTKIRYNHPGTPATVTPTGNGSVKVKLHSAQRAITPGQAAVFYQDDLILGGGWICR

Samples

Sample ID Description Type Environment
1 3300000545 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - CNX_Illumina_Assembled Metagenome Rhizosphere
2 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
10 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
11 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
12 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
13 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
16 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
17 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
18 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
19 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
20 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
21 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
24 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
25 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
29 3300007788 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 Metagenome Rhizosphere
30 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
31 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
32 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
38 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
39 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
40 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
58 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
59 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
60 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
61 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
62 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
63 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
64 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
65 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
66 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
67 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
68 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
69 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
70 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
71 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
72 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
73 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
74 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
75 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
76 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
77 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
78 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
79 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
80 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
81 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
82 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
83 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
84 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
85 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
86 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
87 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
88 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
89 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
90 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
91 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
92 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
93 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
94 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
95 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
96 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
97 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
98 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
99 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
100 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
101 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
102 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
103 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
104 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
105 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
106 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
107 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
108 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
109 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
110 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
111 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
112 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
113 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
114 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
115 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
116 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
117 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
118 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
119 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
120 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
121 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
122 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
123 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
124 3300046681 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 rhizosphere Metagenome Rhizosphere
125 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
126 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
127 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
128 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
129 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
130 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
131 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
132 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
133 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
134 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
135 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
136 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
137 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
138 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
139 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
140 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
142 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
143 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
144 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
145 8007375930 Clostridium sp. YIM B02565 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.62
Metatranscriptomes 0
Isolates 0.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 1.92
Rhizoplane 1.15
Rhizosphere 95.79
Stem 0
Stem Tuber 0
Unclassified 1.15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 CNXas_1000813 3300000545 Bacteria 2016
2 JGI24737J22298_10007175 3300001990 Bacteria 3772
3 Ga0065704_10080166 3300005289 Bacteria 3997
4 Ga0070658_10047231 3300005327 Bacteria 3484
5 Ga0070683_100023134 3300005329 Bacteria 5556
6 Ga0070666_10149208 3300005335 Unclassified 1631
7 Ga0070680_100027969 3300005336 Bacteria 4520
8 Ga0070689_100011135 3300005340 Bacteria 6436
9 Ga0070689_100029235 3300005340 Bacteria 4169
10 Ga0070687_100135187 3300005343 Bacteria 1428
11 Ga0070659_100014486 3300005366 Bacteria 5893
12 Ga0070714_100000025 3300005435 Bacteria 147717
13 Ga0070711_100002192 3300005439 Bacteria 11087
14 Ga0070694_100001394 3300005444 Bacteria 14127
15 Ga0070681_10161401 3300005458 Bacteria 2165
16 Ga0070706_100000859 3300005467 Bacteria 33463
17 Ga0070706_100078878 3300005467 Bacteria 3048
18 Ga0070698_100179057 3300005471 Bacteria 2058
19 Ga0070679_100052540 3300005530 Bacteria 4058
20 Ga0070679_100065395 3300005530 Bacteria 3625
21 Ga0070679_100213490 3300005530 Bacteria 1892
22 Ga0070697_100168365 3300005536 Bacteria 1853
23 Ga0070686_100018024 3300005544 Unclassified 4137
24 Ga0070704_100001090 3300005549 Bacteria 14087
25 Ga0068855_100062857 3300005563 Bacteria 4334
26 Ga0068855_100129187 3300005563 Bacteria 2887
27 Ga0068855_100157590 3300005563 Bacteria 2579
28 Ga0068856_100000317 3300005614 Bacteria 52949
29 Ga0068856_100016111 3300005614 Bacteria 7225
30 Ga0070702_100226280 3300005615 Bacteria 1254
31 Ga0068859_100002866 3300005617 Bacteria 17499
32 Ga0068863_100064148 3300005841 Unclassified 3474
33 Ga0075428_100206685 3300006844 Bacteria 2122
34 Ga0075428_100296274 3300006844 Bacteria 1739
35 Ga0097620_100002866 3300006931 Bacteria 17499
36 Ga0079104_1000215 3300006946 Bacteria 80891
37 Ga0079104_1001139 3300006946 Bacteria 19347
38 Ga0079104_1007202 3300006946 Bacteria 4073
39 Ga0099795_10040517 3300007788 Bacteria 1654
40 Ga0105240_10046797 3300009093 Bacteria 5478
41 Ga0105240_10047793 3300009093 Bacteria 5412
42 Ga0105240_10157889 3300009093 Bacteria 2696
43 Ga0105240_10256751 3300009093 Bacteria 2018
44 Ga0105240_10594809 3300009093 Bacteria 1219
45 Ga0111539_10117399 3300009094 Bacteria 3119
46 Ga0111539_10194889 3300009094 Bacteria 2363
47 Ga0111539_10418701 3300009094 Bacteria 1560
48 Ga0114129_10118171 3300009147 Bacteria 3652
49 Ga0105242_10006643 3300009176 Bacteria 8921
50 Ga0105242_10284058 3300009176 Unclassified 1504
51 Ga0105238_10010768 3300009551 Bacteria 9187
52 Ga0105238_10028213 3300009551 Bacteria 5718
53 Ga0105238_10098165 3300009551 Bacteria 2913
54 Ga0105239_10056212 3300010375 Bacteria 4317
55 Ga0157370_10038124 3300013104 Bacteria 4651
56 Ga0157375_10000063 3300013308 Bacteria 113258
57 Ga0163163_10000065 3300014325 Bacteria 115460
58 Ga0163163_10172776 3300014325 Bacteria 2208
59 Ga0157376_10104005 3300014969 Unclassified 2487
60 Ga0157376_10290640 3300014969 Bacteria 1543
61 Ga0207705_10054285 3300025909 Bacteria 2888
62 Ga0207684_10003095 3300025910 Bacteria 16415
63 Ga0207654_10014649 3300025911 Bacteria 4054
64 Ga0207695_10105894 3300025913 Bacteria 2799
65 Ga0207663_10009780 3300025916 Bacteria 5076
66 Ga0207662_10154975 3300025918 Bacteria 1460
67 Ga0207652_10027456 3300025921 Bacteria 4744
68 Ga0207652_10048191 3300025921 Bacteria 3642
69 Ga0207694_10050449 3300025924 Unclassified 3223
70 Ga0207694_10069534 3300025924 Bacteria 2751
71 Ga0207694_10237710 3300025924 Bacteria 1488
72 Ga0207664_10000071 3300025929 Bacteria 105708
73 Ga0207686_10005806 3300025934 Bacteria 6621
74 Ga0207686_10144476 3300025934 Unclassified 1648
75 Ga0207670_10006204 3300025936 Bacteria 6615
76 Ga0207670_10059171 3300025936 Bacteria 2605
77 Ga0207711_10259826 3300025941 Unclassified 1596
78 Ga0207661_10069426 3300025944 Bacteria 2873
79 Ga0207667_10046218 3300025949 Bacteria 4610
80 Ga0207667_10083016 3300025949 Bacteria 3318
81 Ga0207667_10158002 3300025949 Bacteria 2333
82 Ga0207667_10385878 3300025949 Bacteria 1427
83 Ga0207702_10001566 3300026078 Bacteria 22646
84 Ga0207702_10025223 3300026078 Bacteria 4933
85 Ga0207676_10081333 3300026095 Bacteria 2632
86 Ga0207675_100299520 3300026118 Unclassified 1566
87 Ga0209281_1000088 3300027111 Bacteria 245908
88 Ga0209281_1000235 3300027111 Bacteria 115011
89 Ga0265337_1000409 3300028556 Bacteria 22991
90 Ga0265337_1001767 3300028556 Bacteria 10424
91 Ga0265326_10004573 3300028558 Bacteria 4422
92 Ga0265319_1000001 3300028563 Bacteria 549513
93 Ga0265319_1013850 3300028563 Bacteria 3187
94 Ga0265318_10023204 3300028577 Bacteria 2474
95 Ga0265323_10002005 3300028653 Bacteria 9602
96 Ga0265323_10006278 3300028653 Bacteria 5000
97 Ga0265323_10010136 3300028653 Bacteria 3825
98 Ga0265323_10032363 3300028653 Unclassified 1940
99 Ga0265322_10024688 3300028654 Bacteria 1720
100 Ga0265336_10001649 3300028666 Bacteria 9882
101 Ga0265338_10000009 3300028800 Bacteria 448611
102 Ga0265338_10000041 3300028800 Bacteria 230676
103 Ga0265338_10000452 3300028800 Bacteria 73214
104 Ga0265338_10000574 3300028800 Bacteria 64844
105 Ga0265338_10000836 3300028800 Bacteria 51897
106 Ga0265338_10001643 3300028800 Bacteria 35770
107 Ga0265338_10002101 3300028800 Bacteria 30750
108 Ga0265338_10002915 3300028800 Bacteria 24849
109 Ga0265338_10002935 3300028800 Bacteria 24739
110 Ga0265338_10004643 3300028800 Bacteria 18461
111 Ga0265338_10006851 3300028800 Bacteria 14351
112 Ga0265338_10008800 3300028800 Bacteria 12184
113 Ga0265338_10011378 3300028800 Bacteria 10287
114 Ga0265338_10013529 3300028800 Bacteria 9201
115 Ga0265338_10017104 3300028800 Bacteria 7837
116 Ga0265338_10026280 3300028800 Bacteria 5879
117 Ga0265338_10031497 3300028800 Bacteria 5199
118 Ga0265338_10037911 3300028800 Bacteria 4576
119 Ga0265338_10090129 3300028800 Bacteria 2539
120 Ga0265338_10169232 3300028800 Bacteria 1678
121 Ga0265324_10000436 3300029957 Bacteria 29666
122 Ga0265324_10000876 3300029957 Bacteria 19268
123 Ga0265324_10001437 3300029957 Bacteria 13653
124 Ga0265324_10007346 3300029957 Bacteria 4475
125 Ga0265324_10010399 3300029957 Bacteria 3587
126 Ga0265324_10053059 3300029957 Bacteria 1392
127 Ga0265330_10041156 3300031235 Unclassified 2050
128 Ga0265332_10010014 3300031238 Unclassified 4223
129 Ga0265320_10000666 3300031240 Bacteria 26164
130 Ga0265320_10014917 3300031240 Bacteria 4406
131 Ga0265320_10015500 3300031240 Bacteria 4307
132 Ga0265320_10017171 3300031240 Unclassified 4029
133 Ga0265340_10018559 3300031247 Bacteria 3587
134 Ga0265339_10006910 3300031249 Bacteria 7394
135 Ga0265339_10078136 3300031249 Bacteria 1753
136 Ga0265327_10000985 3300031251 Bacteria 40550
137 Ga0265327_10002388 3300031251 Bacteria 19930
138 Ga0265327_10028561 3300031251 Bacteria 3188
139 Ga0265316_10001074 3300031344 Bacteria 29554
140 Ga0265316_10001700 3300031344 Bacteria 23353
141 Ga0265316_10046641 3300031344 Bacteria 3432
142 Ga0265313_10003394 3300031595 Bacteria 12930
143 Ga0265313_10003545 3300031595 Bacteria 12577
144 Ga0316579_10114263 3300031691 Bacteria 1296
145 Ga0265314_10000042 3300031711 Bacteria 215775
146 Ga0265314_10026268 3300031711 Bacteria 4377
147 Ga0265314_10076998 3300031711 Bacteria 2214
148 Ga0265342_10019591 3300031712 Bacteria 4358
149 Ga0265342_10069313 3300031712 Bacteria 2060
150 Ga0265342_10147325 3300031712 Unclassified 1310
151 Ga0316577_10000175 3300031733 Bacteria 20600
152 Ga0316577_10000650 3300031733 Bacteria 14510
153 Ga0316577_10002307 3300031733 Bacteria 9410
154 Ga0373930_0007024 3300034816 Bacteria 1923
155 Ga0373928_0000167 3300035084 Bacteria 12758
156 Ga0373929_0001391 3300035085 Bacteria 4635
157 Ga0373944_0008545 3300035089 Bacteria 2768
158 Ga0373949_0002768 3300035090 Bacteria 4375
159 Ga0373951_0005339 3300035091 Bacteria 2991
160 Ga0373932_0000002 3300035112 Bacteria 711821
161 Ga0373946_0014717 3300035171 Unclassified 2955
162 Ga0373962_0000130 3300035242 Bacteria 15651
163 Ga0316574_0002689 3300035398 Bacteria 8984
164 Ga0373931_0000012 3300035691 Bacteria 267735
165 Ga0373935_0002228 3300035692 Bacteria 11024
166 Ga0373927_0004741 3300035695 Bacteria 9472
167 Ga0373927_0006301 3300035695 Bacteria 8091
168 Ga0373927_0016336 3300035695 Bacteria 4898
169 Ga0373933_0023087 3300035724 Bacteria 3550
170 Ga0373947_0001326 3300035725 Bacteria 15235
171 Ga0373947_0117563 3300035725 Bacteria 1687
172 Ga0373937_0022337 3300036401 Bacteria 5689
173 Ga0373937_0281704 3300036401 Bacteria 1570
174 Ga0316582_0019436 3300036647 Unclassified 3976
175 Ga0316582_0090064 3300036647 Bacteria 2018
176 Ga0316582_0091867 3300036647 Bacteria 1999
177 Ga0316584_0001438 3300036712 Bacteria 14266
178 Ga0316584_0008043 3300036712 Bacteria 7241
179 Ga0316584_0200771 3300036712 Bacteria 1471
180 Ga0316584_0274797 3300036712 Unclassified 1225
181 Ga0373925_0000963 3300037068 Bacteria 26170
182 Ga0373925_0001369 3300037068 Bacteria 21260
183 Ga0373925_0006387 3300037068 Bacteria 8677
184 Ga0316581_0004877 3300037588 Bacteria 3454
185 Ga0395901_0179741 3300038443 Bacteria 2219
186 Ga0400489_73525 3300039093 Bacteria 2164
187 Ga0451577_0001362 3300042876 Bacteria 32891
188 Ga0451577_0034494 3300042876 Bacteria 4561
189 Ga0451577_0483803 3300042876 Unclassified 1124
190 Ga0453684_0000004 3300044712 Bacteria 1469893
191 Ga0453684_0011080 3300044712 Bacteria 15221
192 Ga0453684_0021765 3300044712 Bacteria 9555
193 Ga0453684_0030722 3300044712 Bacteria 7578
194 Ga0453684_0044438 3300044712 Bacteria 5943
195 Ga0453684_0130516 3300044712 Bacteria 3016
196 Ga0453684_0186470 3300044712 Bacteria 2431
197 Ga0453684_0537669 3300044712 Unclassified 1289
198 Ga0453684_0553163 3300044712 Bacteria 1267
199 Ga0466970_0009004 3300044765 Bacteria 5035
200 Ga0451576_0062121 3300045051 Bacteria 3895
201 Ga0451576_0142408 3300045051 Bacteria 2500
202 Ga0451576_0238936 3300045051 Unclassified 1898
203 Ga0495592_0000151 3300046454 Bacteria 60491
204 Ga0495592_0069912 3300046454 Unclassified 2559
205 Ga0495629_0029757 3300046459 Bacteria 3872
206 Ga0495580_0000940 3300046472 Bacteria 25465
207 Ga0495582_0008360 3300046473 Bacteria 5711
208 Ga0495582_0069387 3300046473 Unclassified 1949
209 Ga0495662_0026930 3300046476 Unclassified 2776
210 Ga0495664_0044840 3300046477 Unclassified 2621
211 Ga0495594_0001549 3300046499 Bacteria 11935
212 Ga0495594_0071864 3300046499 Bacteria 1924
213 Ga0495618_0002158 3300046514 Bacteria 12881
214 Ga0495620_0009814 3300046515 Bacteria 5078
215 Ga0495628_0000092 3300046516 Bacteria 71184
216 Ga0495630_0035379 3300046517 Unclassified 3732
217 Ga0495630_0039450 3300046517 Unclassified 3530
218 Ga0495630_0161459 3300046517 Bacteria 1706
219 Ga0495666_0022427 3300046526 Bacteria 3126
220 Ga0495666_0043657 3300046526 Bacteria 2165
221 Ga0495666_0120822 3300046526 Bacteria 1227
222 Ga0495652_0149557 3300046529 Unclassified 1826
223 Ga0495586_0000094 3300046535 Bacteria 54446
224 Ga0495586_0000559 3300046535 Bacteria 21546
225 Ga0495586_0000920 3300046535 Bacteria 16752
226 Ga0495586_0034458 3300046535 Bacteria 2719
227 Ga0495645_0041473 3300046543 Bacteria 3356
228 Ga0495622_0049837 3300046557 Unclassified 1944
229 Ga0495634_0005140 3300046642 Bacteria 10103
230 Ga0495634_0023563 3300046642 Bacteria 4324
231 Ga0495634_0102744 3300046642 Bacteria 1846
232 Ga0495635_0111789 3300046663 Bacteria 1866
233 Ga0495599_0006773 3300046678 Bacteria 6921
234 Ga0495599_0127026 3300046678 Bacteria 1585
235 Ga0495647_0011377 3300046681 Bacteria 3049
236 Ga0495658_0025931 3300046683 Bacteria 3137
237 Ga0495613_0002630 3300046689 Bacteria 13501
238 Ga0495613_0173521 3300046689 Unclassified 1529
239 Ga0495624_0101086 3300046690 Bacteria 1775
240 Ga0495674_0004011 3300047319 Bacteria 14252
241 Ga0495674_0102521 3300047319 Unclassified 2433
242 Ga0495674_0104306 3300047319 Bacteria 2410
243 Ga0495680_0190054 3300047322 Unclassified 1478
244 Ga0495675_0016785 3300047444 Bacteria 4630
245 Ga0495614_0034947 3300048089 Bacteria 2160
246 Ga0496106_0315616 3300048909 Unclassified 1254
247 Ga0496107_0209788 3300048910 Unclassified 1448
248 Ga0496115_0002688 3300048918 Bacteria 12754
249 Ga0496126_0000214 3300048929 Bacteria 127811
250 Ga0501033_0015093 3300049570 Bacteria 5861
251 Ga0501034_0037164 3300049571 Bacteria 4931
252 Ga0501037_0199487 3300049573 Bacteria 1414
253 Ga0501043_0020213 3300049579 Bacteria 5228
254 Ga0501047_0155967 3300049581 Unclassified 2157
255 Ga0501047_0368423 3300049581 Bacteria 1272
256 Ga0501035_0006810 3300049822 Bacteria 10679
257 Ga0501035_0018362 3300049822 Bacteria 6445
258 Ga0501044_0006186 3300049823 Bacteria 13231
259 nmdc:mga06r32_124239_c1 3300050510 Bacteria 2547
260 nmdc:mga08y16_111273_c1 3300050511 Bacteria 2851

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300050511 nmdc:mga08y16_111273_c1 nmdc:mga08y16_111273_c1_1890_2792 299
2 3300042876 Ga0451577_0483803 Ga0451577_0483803_69_1031 301
3 3300046526 Ga0495666_0120822 Ga0495666_0120822_22_1026 308
4 3300026095 Ga0207676_10081333 Ga0207676_100813332 315
5 3300036712 Ga0316584_0200771 Ga0316584_0200771_488_1444 316
6 3300038443 Ga0395901_0179741 Ga0395901_0179741_1224_2207 318
7 3300046459 Ga0495629_0029757 Ga0495629_0029757_654_1712 327
8 3300046472 Ga0495580_0000940 Ga0495580_0000940_4260_5318 327
9 3300046473 Ga0495582_0008360 Ga0495582_0008360_2551_3609 327
10 3300046499 Ga0495594_0001549 Ga0495594_0001549_2578_3636 327
11 3300046526 Ga0495666_0043657 Ga0495666_0043657_486_1544 327
12 3300046499 Ga0495594_0071864 Ga0495594_0071864_210_1379 333
13 3300046515 Ga0495620_0009814 Ga0495620_0009814_562_1602 333
14 3300046681 Ga0495647_0011377 Ga0495647_0011377_1690_2844 333
15 3300048089 Ga0495614_0034947 Ga0495614_0034947_495_1649 333
16 3300014969 Ga0157376_10104005 Ga0157376_101040053 334
17 3300028800 Ga0265338_10037911 Ga0265338_100379112 334
18 3300049581 Ga0501047_0368423 Ga0501047_0368423_170_1249 334
19 3300005336 Ga0070680_100027969 Ga0070680_1000279691 335
20 3300005530 Ga0070679_100052540 Ga0070679_1000525403 335
21 3300005530 Ga0070679_100065395 Ga0070679_1000653952 335
22 3300010375 Ga0105239_10056212 Ga0105239_100562122 335
23 3300025921 Ga0207652_10027456 Ga0207652_100274563 335
24 3300025921 Ga0207652_10048191 Ga0207652_100481913 335
25 3300039093 Ga0400489_73525 Ga0400489_73525_787_1824 335
26 3300046663 Ga0495635_0111789 Ga0495635_0111789_834_1853 335
27 3300009176 Ga0105242_10006643 Ga0105242_100066434 336
28 3300025918 Ga0207662_10154975 Ga0207662_101549752 336
29 3300025934 Ga0207686_10005806 Ga0207686_100058062 336
30 3300005289 Ga0065704_10080166 Ga0065704_100801662 337
31 3300005343 Ga0070687_100135187 Ga0070687_1001351871 337
32 3300005444 Ga0070694_100001394 Ga0070694_1000013944 337
33 3300005549 Ga0070704_100001090 Ga0070704_10000109011 337
34 3300028653 Ga0265323_10010136 Ga0265323_100101363 337
35 3300028653 Ga0265323_10032363 Ga0265323_100323634 337
36 3300028654 Ga0265322_10024688 Ga0265322_100246883 337
37 3300031235 Ga0265330_10041156 Ga0265330_100411564 337
38 3300031238 Ga0265332_10010014 Ga0265332_100100142 337
39 3300031344 Ga0265316_10001074 Ga0265316_1000107418 337
40 3300031711 Ga0265314_10000042 Ga0265314_10000042133 337
41 3300031712 Ga0265342_10019591 Ga0265342_100195916 337
42 3300036647 Ga0316582_0090064 Ga0316582_0090064_575_1663 337
43 3300044712 Ga0453684_0537669 Ga0453684_0537669_128_1207 337
44 3300009147 Ga0114129_10118171 Ga0114129_101181712 338
45 3300045051 Ga0451576_0142408 Ga0451576_0142408_605_1696 339
46 3300031733 Ga0316577_10000175 Ga0316577_100001759 340
47 3300031733 Ga0316577_10000650 Ga0316577_100006505 340
48 3300031733 Ga0316577_10002307 Ga0316577_100023078 340
49 3300036647 Ga0316582_0019436 Ga0316582_0019436_2936_3964 340
50 3300036647 Ga0316582_0091867 Ga0316582_0091867_116_1144 340
51 3300036712 Ga0316584_0001438 Ga0316584_0001438_59_1087 340
52 3300036712 Ga0316584_0008043 Ga0316584_0008043_643_1683 340
53 3300036712 Ga0316584_0274797 Ga0316584_0274797_33_1061 340
54 3300037588 Ga0316581_0004877 Ga0316581_0004877_603_1643 340
55 3300009093 Ga0105240_10047793 Ga0105240_100477933 341
56 3300029957 Ga0265324_10000876 Ga0265324_100008763 341
57 3300031711 Ga0265314_10026268 Ga0265314_100262682 341
58 3300044765 Ga0466970_0009004 Ga0466970_0009004_1261_2418 341
59 3300049581 Ga0501047_0155967 Ga0501047_0155967_554_1693 341
60 3300031712 Ga0265342_10069313 Ga0265342_100693133 342
61 3300001990 JGI24737J22298_10007175 JGI24737J22298_100071752 343
62 3300005366 Ga0070659_100014486 Ga0070659_1000144864 343
63 3300025911 Ga0207654_10014649 Ga0207654_100146493 343
64 3300045051 Ga0451576_0238936 Ga0451576_0238936_505_1590 343
65 3300005435 Ga0070714_100000025 Ga0070714_10000002573 344
66 3300005467 Ga0070706_100000859 Ga0070706_10000085928 344
67 3300005471 Ga0070698_100179057 Ga0070698_1001790571 344
68 3300007788 Ga0099795_10040517 Ga0099795_100405171 344
69 3300025910 Ga0207684_10003095 Ga0207684_100030957 344
70 3300025929 Ga0207664_10000071 Ga0207664_1000007167 344
71 3300042876 Ga0451577_0001362 Ga0451577_0001362_24568_25695 344
72 3300044712 Ga0453684_0000004 Ga0453684_0000004_674826_675953 344
73 3300044712 Ga0453684_0011080 Ga0453684_0011080_3566_4615 344
74 3300044712 Ga0453684_0044438 Ga0453684_0044438_111_1190 344
75 3300044712 Ga0453684_0553163 Ga0453684_0553163_59_1138 344
76 3300005467 Ga0070706_100078878 Ga0070706_1000788781 345
77 3300005536 Ga0070697_100168365 Ga0070697_1001683652 345
78 3300006946 Ga0079104_1000215 Ga0079104_100021525 345
79 3300006946 Ga0079104_1001139 Ga0079104_100113918 345
80 3300006946 Ga0079104_1007202 Ga0079104_10072024 345
81 3300027111 Ga0209281_1000088 Ga0209281_1000088151 345
82 3300027111 Ga0209281_1000235 Ga0209281_100023563 345
83 3300028556 Ga0265337_1000409 Ga0265337_10004093 345
84 3300028666 Ga0265336_10001649 Ga0265336_100016493 345
85 3300028800 Ga0265338_10002101 Ga0265338_100021015 345
86 3300028800 Ga0265338_10002935 Ga0265338_1000293519 345
87 3300031240 Ga0265320_10000666 Ga0265320_1000066621 345
88 3300031249 Ga0265339_10078136 Ga0265339_100781362 345
89 3300035398 Ga0316574_0002689 Ga0316574_0002689_1932_3047 345
90 3300044712 Ga0453684_0021765 Ga0453684_0021765_5573_6658 345
91 3300048929 Ga0496126_0000214 Ga0496126_0000214_38872_39948 345
92 iso_pu_bacteria 8007375930 8007377629 345
93 3300006844 Ga0075428_100296274 Ga0075428_1002962742 346
94 3300009094 Ga0111539_10117399 Ga0111539_101173995 346
95 3300009094 Ga0111539_10418701 Ga0111539_104187012 346
96 3300050510 nmdc:mga06r32_124239_c1 nmdc:mga06r32_124239_c1_473_1567 346
97 3300005458 Ga0070681_10161401 Ga0070681_101614012 347
98 3300005530 Ga0070679_100213490 Ga0070679_1002134901 347
99 3300005614 Ga0068856_100000317 Ga0068856_10000031733 347
100 3300009551 Ga0105238_10028213 Ga0105238_100282136 347
101 3300025924 Ga0207694_10069534 Ga0207694_100695342 347
102 3300025949 Ga0207667_10083016 Ga0207667_100830163 347
103 3300026078 Ga0207702_10001566 Ga0207702_1000156616 347
104 3300031251 Ga0265327_10000985 Ga0265327_1000098528 347
105 3300031344 Ga0265316_10046641 Ga0265316_100466413 347
106 3300031691 Ga0316579_10114263 Ga0316579_101142632 347
107 3300031711 Ga0265314_10076998 Ga0265314_100769983 347
108 3300034816 Ga0373930_0007024 Ga0373930_0007024_572_1657 347
109 3300035084 Ga0373928_0000167 Ga0373928_0000167_3486_4571 347
110 3300035085 Ga0373929_0001391 Ga0373929_0001391_2570_3655 347
111 3300035090 Ga0373949_0002768 Ga0373949_0002768_756_1841 347
112 3300035091 Ga0373951_0005339 Ga0373951_0005339_1697_2782 347
113 3300035112 Ga0373932_0000002 Ga0373932_0000002_56727_57812 347
114 3300035242 Ga0373962_0000130 Ga0373962_0000130_13105_14190 347
115 3300035691 Ga0373931_0000012 Ga0373931_0000012_56746_57831 347
116 3300042876 Ga0451577_0034494 Ga0451577_0034494_2223_3269 347
117 3300044712 Ga0453684_0130516 Ga0453684_0130516_135_1220 347
118 3300044712 Ga0453684_0186470 Ga0453684_0186470_1246_2325 347
119 3300046454 Ga0495592_0069912 Ga0495592_0069912_851_1927 347
120 3300046678 Ga0495599_0127026 Ga0495599_0127026_429_1505 347
121 3300047319 Ga0495674_0104306 Ga0495674_0104306_565_1647 347
122 3300048918 Ga0496115_0002688 Ga0496115_0002688_160_1293 347
123 3300049571 Ga0501034_0037164 Ga0501034_0037164_3117_4208 347
124 3300049579 Ga0501043_0020213 Ga0501043_0020213_201_1292 347
125 3300000545 CNXas_1000813 CNXas_10008132 348
126 3300005327 Ga0070658_10047231 Ga0070658_100472312 348
127 3300005329 Ga0070683_100023134 Ga0070683_1000231344 348
128 3300005335 Ga0070666_10149208 Ga0070666_101492081 348
129 3300005340 Ga0070689_100011135 Ga0070689_1000111351 348
130 3300005340 Ga0070689_100029235 Ga0070689_1000292354 348
131 3300005439 Ga0070711_100002192 Ga0070711_1000021929 348
132 3300005544 Ga0070686_100018024 Ga0070686_1000180245 348
133 3300005563 Ga0068855_100062857 Ga0068855_1000628573 348
134 3300005563 Ga0068855_100129187 Ga0068855_1001291872 348
135 3300005563 Ga0068855_100157590 Ga0068855_1001575903 348
136 3300005614 Ga0068856_100016111 Ga0068856_1000161113 348
137 3300005615 Ga0070702_100226280 Ga0070702_1002262801 348
138 3300005617 Ga0068859_100002866 Ga0068859_10000286614 348
139 3300005841 Ga0068863_100064148 Ga0068863_1000641483 348
140 3300006844 Ga0075428_100206685 Ga0075428_1002066852 348
141 3300006931 Ga0097620_100002866 Ga0097620_10000286614 348
142 3300009093 Ga0105240_10046797 Ga0105240_100467974 348
143 3300009093 Ga0105240_10157889 Ga0105240_101578892 348
144 3300009093 Ga0105240_10256751 Ga0105240_102567512 348
145 3300009093 Ga0105240_10594809 Ga0105240_105948091 348
146 3300009094 Ga0111539_10194889 Ga0111539_101948891 348
147 3300009176 Ga0105242_10284058 Ga0105242_102840581 348
148 3300009551 Ga0105238_10010768 Ga0105238_100107682 348
149 3300009551 Ga0105238_10098165 Ga0105238_100981653 348
150 3300013104 Ga0157370_10038124 Ga0157370_100381244 348
151 3300013308 Ga0157375_10000063 Ga0157375_1000006364 348
152 3300014325 Ga0163163_10000065 Ga0163163_1000006568 348
153 3300014325 Ga0163163_10172776 Ga0163163_101727763 348
154 3300014969 Ga0157376_10290640 Ga0157376_102906401 348
155 3300025909 Ga0207705_10054285 Ga0207705_100542854 348
156 3300025913 Ga0207695_10105894 Ga0207695_101058942 348
157 3300025916 Ga0207663_10009780 Ga0207663_100097802 348
158 3300025924 Ga0207694_10050449 Ga0207694_100504492 348
159 3300025924 Ga0207694_10237710 Ga0207694_102377102 348
160 3300025934 Ga0207686_10144476 Ga0207686_101444761 348
161 3300025936 Ga0207670_10006204 Ga0207670_100062045 348
162 3300025936 Ga0207670_10059171 Ga0207670_100591711 348
163 3300025941 Ga0207711_10259826 Ga0207711_102598261 348
164 3300025944 Ga0207661_10069426 Ga0207661_100694264 348
165 3300025949 Ga0207667_10046218 Ga0207667_100462183 348
166 3300025949 Ga0207667_10158002 Ga0207667_101580022 348
167 3300025949 Ga0207667_10385878 Ga0207667_103858781 348
168 3300026078 Ga0207702_10025223 Ga0207702_100252233 348
169 3300026118 Ga0207675_100299520 Ga0207675_1002995201 348
170 3300028556 Ga0265337_1001767 Ga0265337_10017673 348
171 3300028558 Ga0265326_10004573 Ga0265326_100045733 348
172 3300028563 Ga0265319_1000001 Ga0265319_1000001139 348
173 3300028563 Ga0265319_1013850 Ga0265319_10138503 348
174 3300028577 Ga0265318_10023204 Ga0265318_100232042 348
175 3300028653 Ga0265323_10002005 Ga0265323_100020053 348
176 3300028653 Ga0265323_10006278 Ga0265323_100062785 348
177 3300028800 Ga0265338_10000009 Ga0265338_10000009305 348
178 3300028800 Ga0265338_10000041 Ga0265338_1000004140 348
179 3300028800 Ga0265338_10000452 Ga0265338_1000045212 348
180 3300028800 Ga0265338_10000574 Ga0265338_1000057451 348
181 3300028800 Ga0265338_10000836 Ga0265338_1000083627 348
182 3300028800 Ga0265338_10001643 Ga0265338_1000164311 348
183 3300028800 Ga0265338_10002915 Ga0265338_1000291519 348
184 3300028800 Ga0265338_10004643 Ga0265338_100046439 348
185 3300028800 Ga0265338_10006851 Ga0265338_1000685113 348
186 3300028800 Ga0265338_10008800 Ga0265338_100088001 348
187 3300028800 Ga0265338_10011378 Ga0265338_100113788 348
188 3300028800 Ga0265338_10013529 Ga0265338_100135298 348
189 3300028800 Ga0265338_10017104 Ga0265338_100171045 348
190 3300028800 Ga0265338_10026280 Ga0265338_100262804 348
191 3300028800 Ga0265338_10031497 Ga0265338_100314974 348
192 3300028800 Ga0265338_10090129 Ga0265338_100901292 348
193 3300028800 Ga0265338_10169232 Ga0265338_101692321 348
194 3300029957 Ga0265324_10000436 Ga0265324_1000043617 348
195 3300029957 Ga0265324_10001437 Ga0265324_1000143710 348
196 3300029957 Ga0265324_10007346 Ga0265324_100073463 348
197 3300029957 Ga0265324_10010399 Ga0265324_100103992 348
198 3300029957 Ga0265324_10053059 Ga0265324_100530591 348
199 3300031240 Ga0265320_10014917 Ga0265320_100149171 348
200 3300031240 Ga0265320_10015500 Ga0265320_100155002 348
201 3300031240 Ga0265320_10017171 Ga0265320_100171713 348
202 3300031247 Ga0265340_10018559 Ga0265340_100185592 348
203 3300031249 Ga0265339_10006910 Ga0265339_100069108 348
204 3300031251 Ga0265327_10002388 Ga0265327_100023882 348
205 3300031251 Ga0265327_10028561 Ga0265327_100285612 348
206 3300031344 Ga0265316_10001700 Ga0265316_1000170019 348
207 3300031595 Ga0265313_10003394 Ga0265313_100033941 348
208 3300031595 Ga0265313_10003545 Ga0265313_1000354512 348
209 3300031712 Ga0265342_10147325 Ga0265342_101473252 348
210 3300035089 Ga0373944_0008545 Ga0373944_0008545_1305_2456 348
211 3300035171 Ga0373946_0014717 Ga0373946_0014717_394_1674 348
212 3300035692 Ga0373935_0002228 Ga0373935_0002228_5695_6975 348
213 3300035695 Ga0373927_0004741 Ga0373927_0004741_999_2279 348
214 3300035695 Ga0373927_0006301 Ga0373927_0006301_1248_2333 348
215 3300035695 Ga0373927_0016336 Ga0373927_0016336_1273_2424 348
216 3300035724 Ga0373933_0023087 Ga0373933_0023087_1276_2418 348
217 3300035725 Ga0373947_0001326 Ga0373947_0001326_1812_3092 348
218 3300035725 Ga0373947_0117563 Ga0373947_0117563_46_1197 348
219 3300036401 Ga0373937_0022337 Ga0373937_0022337_2217_3365 348
220 3300036401 Ga0373937_0281704 Ga0373937_0281704_284_1369 348
221 3300037068 Ga0373925_0000963 Ga0373925_0000963_10813_12093 348
222 3300037068 Ga0373925_0001369 Ga0373925_0001369_14838_15989 348
223 3300037068 Ga0373925_0006387 Ga0373925_0006387_6523_7608 348
224 3300044712 Ga0453684_0030722 Ga0453684_0030722_5831_6883 348
225 3300045051 Ga0451576_0062121 Ga0451576_0062121_1556_2644 348
226 3300046454 Ga0495592_0000151 Ga0495592_0000151_58433_59482 348
227 3300046473 Ga0495582_0069387 Ga0495582_0069387_322_1374 348
228 3300046476 Ga0495662_0026930 Ga0495662_0026930_949_1998 348
229 3300046477 Ga0495664_0044840 Ga0495664_0044840_962_2011 348
230 3300046514 Ga0495618_0002158 Ga0495618_0002158_1754_2896 348
231 3300046516 Ga0495628_0000092 Ga0495628_0000092_10851_11900 348
232 3300046517 Ga0495630_0035379 Ga0495630_0035379_1800_2849 348
233 3300046517 Ga0495630_0039450 Ga0495630_0039450_1428_2708 348
234 3300046517 Ga0495630_0161459 Ga0495630_0161459_372_1457 348
235 3300046526 Ga0495666_0022427 Ga0495666_0022427_1418_2500 348
236 3300046529 Ga0495652_0149557 Ga0495652_0149557_105_1154 348
237 3300046535 Ga0495586_0000094 Ga0495586_0000094_17597_18679 348
238 3300046535 Ga0495586_0000559 Ga0495586_0000559_15390_16439 348
239 3300046535 Ga0495586_0000920 Ga0495586_0000920_11539_12681 348
240 3300046535 Ga0495586_0034458 Ga0495586_0034458_1599_2687 348
241 3300046543 Ga0495645_0041473 Ga0495645_0041473_505_1593 348
242 3300046557 Ga0495622_0049837 Ga0495622_0049837_234_1361 348
243 3300046642 Ga0495634_0005140 Ga0495634_0005140_2089_3231 348
244 3300046642 Ga0495634_0023563 Ga0495634_0023563_2187_3269 348
245 3300046642 Ga0495634_0102744 Ga0495634_0102744_522_1607 348
246 3300046678 Ga0495599_0006773 Ga0495599_0006773_4212_5261 348
247 3300046683 Ga0495658_0025931 Ga0495658_0025931_150_1232 348
248 3300046689 Ga0495613_0002630 Ga0495613_0002630_2281_3423 348
249 3300046689 Ga0495613_0173521 Ga0495613_0173521_212_1294 348
250 3300046690 Ga0495624_0101086 Ga0495624_0101086_141_1223 348
251 3300047319 Ga0495674_0004011 Ga0495674_0004011_7629_8678 348
252 3300047319 Ga0495674_0102521 Ga0495674_0102521_1218_2300 348
253 3300047322 Ga0495680_0190054 Ga0495680_0190054_96_1229 348
254 3300047444 Ga0495675_0016785 Ga0495675_0016785_193_1272 348
255 3300048909 Ga0496106_0315616 Ga0496106_0315616_152_1228 348
256 3300048910 Ga0496107_0209788 Ga0496107_0209788_247_1323 348
257 3300049570 Ga0501033_0015093 Ga0501033_0015093_699_1748 348
258 3300049573 Ga0501037_0199487 Ga0501037_0199487_243_1292 348
259 3300049822 Ga0501035_0006810 Ga0501035_0006810_894_1982 348
260 3300049822 Ga0501035_0018362 Ga0501035_0018362_2031_3080 348
261 3300049823 Ga0501044_0006186 Ga0501044_0006186_8787_9836 348

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03054

tRNA_Me_trans

tRNA methyl transferase HUP domain

7

248

0.98

PF20258

tRNA_Me_trans_C

Aminomethyltransferase beta-barrel domain

323

399

0.98

PF20259

tRNA_Me_trans_M

tRNA methyl transferase PRC-barrel domain

253

317

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2deu-assembly2.cif.gz_B cocrystal structure of an rna sulfuration enzyme mnma and trna-glu in the adenylated intermediate state 0.913 1 347
2hma-assembly1.cif.gz_A-2 the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmu from streptococcus pneumoniae 0.911 1 347
2deu-assembly2.cif.gz_B cocrystal structure of an rna sulfuration enzyme mnma and trna-glu in the adenylated intermediate state 0.908 1 347
2der-assembly1.cif.gz_A cocrystal structure of an rna sulfuration enzyme mnma and trna-glu in the initial trna binding state 0.9017 1 347
2hma-assembly1.cif.gz_A-2 the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmu from streptococcus pneumoniae 0.8911 1 347
ID Description Score Start End Superfamily
af_P9WJS5_1_205_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9524 1 203 3.40.50.620
af_P9WJS5_208_272_2.30.30.280 Mainly Beta;Roll;SH3 type barrels.;Adenine nucleotide alpha hydrolases-like domains 0.9409 209 269 2.30.30.280
2hmaA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9402 2 204 3.40.50.620
2detA03 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9386 269 347 2.40.30.10
af_P9WJS5_275_357_2.40.30.10 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;Translation factors 0.9372 273 348 2.40.30.10
ID Description Score Start End GO Terms
AF-A0A2D5MPH0-F1-model_v4 tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) 0.9923 1 348 GO:0000049
GO:0002143
GO:0005524
GO:0005737
GO:0103016
AF-A0A2D5MPH0-F1-model_v4 tRNA-specific 2-thiouridylase MnmA (EC 2.8.1.13) 0.9894 1 348 GO:0000049
GO:0002143
GO:0005524
GO:0005737
GO:0103016
AF-A0A522ANQ4-F1-model_v4 tRNA-uridine 2-sulfurtransferase (EC 2.8.1.13) 0.9853 130 348 GO:0000049
GO:0002143
GO:0005524
GO:0103016
AF-A0A350MSX1-F1-model_v4 tRNA 2-thiouridine(34) synthase MnmA 0.9827 227 348 GO:0002143
GO:0016783
AF-A0A832QF14-F1-model_v4 tRNA-uridine 2-sulfurtransferase (EC 2.8.1.13) 0.9797 1 199 GO:0002143
GO:0016740

Feature Viewer

pLDDT pTM Quality
90.86 0.89 High
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Predicted Structure (AlphaFold2)

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