F370024

General Info

Members Datasets Scaffolds Average Seq Length
261 224 154 341

Family's Representative Sequence

Representative Sequence 3300003316|rootH1_10004377|rootH1_100043772
Length 383
Sequence MAMKMYIAKNGAENTNCNTHSMKILVTGSAGFIGYFLTKKLLERGDEVTGIDNINEYYDVNLKYARLADTGITRSSIAWNKPVNSRQYNNYRFIKLNLEDKRELIALFKKEKFDLVAHLAAQAGVRYSMSNPDVYIQSNITGFLNVLEACRQNKVAHLVYASSSSVYGLNEQMPFSVSQCTNHPVSLYAATKKSNELMAHVYSHLFNIPTTGLRFFTVYGPWGRPDMACFLFTDAIMKGLPITVYNQGKMKRDFTYIDDIVEGIVHVLDKPATPAFTWNGLSPDPSCSPAPYRIYNIGNDNPVELMDFIRELELNCGKKAKIVMKDPERSDVLATWANINDLVTSFDYKPTTTVQTGLQQFMAWYRKYYGVEKVAIDHLDNAF

Samples

Sample ID Description Type Environment
1 2509276018 Mesorhizobium ciceri CMG6 Isolate Nodule
2 2509276022 Mesorhizobium australicum WSM2073 Isolate Nodule
3 2510065059 Mesorhizobium ciceri WSM4083 Isolate Nodule
4 2576861424 Paenibacillus sabinae T27 Isolate Rhizosphere
5 2643221595 Mesorhizobium sp. Root695 Isolate Unclassified
6 2643221627 Mesorhizobium sp. Root102 Isolate Unclassified
7 2648501241 Vibrio splendidus UCD-SED7 Isolate Rhizosphere
8 2651869818 Vibrio splendidus UCD-SED10 Isolate Rhizosphere
9 2671180330 Peribacillus simplex SH-B26 Isolate Unclassified
10 2687453392 Mesorhizobium ciceri biserrulae WSM1284 Isolate Unclassified
11 2738541278 Niastella sp. CF465 Isolate Unclassified
12 2744054655 Acinetobacter sp. BMW17 Isolate Unclassified
13 2808606364 Bacillus sp. SLBN-3 Isolate Unclassified
14 2816332186 Peribacillus frigoritolerans 3612 Isolate Unclassified
15 2842682962 Bacillus sp. R-72492 Isolate Unclassified
16 2842882022 Bacillus sp. R-71893 Isolate Unclassified
17 2844002411 Mesorhizobium sp. M7D.F.Ca.US.005.01.1.1 Isolate Nodule
18 2844009547 Mesorhizobium sp. M7A.F.Ce.TU.012.03.2.1 Isolate Nodule
19 2849139964 Bacillus sp. R-71875 Isolate Unclassified
20 2856328259 Mesorhizobium sp. Primo-B Isolate Nodule
21 2856334872 Mesorhizobium sp. M7A.F.Ca.US.005.03.1.1 Isolate Nodule
22 2857367948 Mesorhizobium sp. M7A.F.Ca.US.002.01.1.1 Isolate Nodule
23 2857604169 Domibacillus sp. R-71921 Isolate Unclassified
24 2869169390 Mesorhizobium sp. M7A.F.Ca.CA.001.10.2.1 Isolate Nodule
25 2869234852 Mesorhizobium sp. M7A.T.Ca.US.000.02.2.1 Isolate Nodule
26 2869242130 Mesorhizobium sp. M7A.F.Ca.CA.004.11.2.1 Isolate Nodule
27 2869249662 Mesorhizobium sp. M7A.F.Ca.CA.001.16.1.1 Isolate Nodule
28 2869256925 Mesorhizobium sp. M7A.F.Ca.MR.176.00.0.0 Isolate Nodule
29 2869264136 Mesorhizobium sp. M7A.F.Ca.CA.001.15.1.1 Isolate Nodule
30 2869271264 Mesorhizobium sp. M7A.F.Ca.AU.002.06.1.1 Isolate Nodule
31 2871466892 Mesorhizobium sp. M7D.F.Ca.US.004.01.2.1 Isolate Nodule
32 2871481445 Mesorhizobium sp. M7A.F.Ca.CA.004.02.1.1 Isolate Nodule
33 2874109183 Mesorhizobium sp. M7A.T.Ca.TU.009.02.1.1 Isolate Nodule
34 2874116593 Mesorhizobium sp. M7A.F.Ca.CA.004.08.2.1 Isolate Nodule
35 2874131515 Mesorhizobium sp. M7A.F.Ca.CA.001.05.1.1 Isolate Nodule
36 2874162495 Mesorhizobium sp. M7A.F.Ca.CA.002.11.2.1 Isolate Nodule
37 2876386047 Mesorhizobium sp. M7A.F.Ca.CA.004.07.1.1 Isolate Nodule
38 2876399893 Mesorhizobium sp. M7A.F.Ca.AU.002.03.1.1 Isolate Nodule
39 2876406927 Mesorhizobium sp. M7A.F.Ca.CA.002.03.2.1 Isolate Nodule
40 2876420981 Mesorhizobium sp. M7A.F.Ca.CA.004.08.1.1 Isolate Nodule
41 2878730984 Mesorhizobium sp. M7A.T.Ca.TU.009.01.1.1 Isolate Nodule
42 2906363423 Mesorhizobium sp. M7A.F.Ca.CA.001.14.1.1 Isolate Nodule
43 2906370794 Mesorhizobium sp. M7A.F.Ca.CA.001.13.1.1 Isolate Nodule
44 2906378014 Mesorhizobium sp. M7D.F.Ca.US.004.03.1.1 Isolate Nodule
45 2906393657 Mesorhizobium sp. M7A.F.Ca.CA.001.11.2.1 Isolate Nodule
46 2906401398 Mesorhizobium sp. M7A.F.Ca.CA.004.10.1.1 Isolate Nodule
47 2906408224 Mesorhizobium sp. M7A.F.Ca.CA.002.03.1.1 Isolate Nodule
48 2906427513 Mesorhizobium sp. M7A.F.Ca.CA.004.05.1.1 Isolate Nodule
49 2908669403 Pantoea coffeiphila 1480 Isolate Rhizosphere
50 2919493220 Aeromonas salmonicida salmonicida 3466 Isolate Unclassified
51 2919497567 Shewanella putrefaciens 3469 Isolate Unclassified
52 2922151315 Mesorhizobium sp. M7A.F.Ca.US.007.01.2.1 Isolate Nodule
53 2922172374 Mesorhizobium sp. M7A.F.Ca.CA.002.06.1.1 Isolate Nodule
54 2922178524 Mesorhizobium sp. M7A.F.Ca.CA.002.09.1.1 Isolate Nodule
55 2924710171 Mesorhizobium sp. M7A.T.Ca.TU.009.01.3.2 Isolate Nodule
56 2924733363 Mesorhizobium sp. M7A.F.Ca.US.011.01.1.1 Isolate Nodule
57 2924741084 Mesorhizobium sp. M7A.F.Ca.CA.004.09.1.2 Isolate Nodule
58 2924748358 Mesorhizobium sp. M7A.F.Ca.CA.002.14.1.2 Isolate Nodule
59 2936361878 Neobacillus endophyticus BRMEA1 Isolate Unclassified
60 2937861824 Mesorhizobium sp. M7A.F.Ca.CA.001.07.2.1 Isolate Nodule
61 2937868953 Mesorhizobium sp. M7A.F.Ca.CA.001.13.2.1 Isolate Nodule
62 2937980651 Mesorhizobium sp. M7A.F.Ca.CA.004.04.2.1 Isolate Nodule
63 2958122699 Mesorhizobium sp. M7A.F.Ca.US.001.04.2.1 Isolate Nodule
64 2958137437 Mesorhizobium sp. M7A.F.Ca.CA.002.04.1.1 Isolate Nodule
65 2961136820 Mesorhizobium sp. M7A.F.Ca.AU.001.01.1.1 Isolate Nodule
66 2961183825 Mesorhizobium sp. M7A.F.Ca.CA.001.12.1.1 Isolate Nodule
67 2965025482 Mesorhizobium sp. Primo-A Isolate Nodule
68 2965032056 Mesorhizobium sp. M7A.F.Ca.US.006.04.2.1 Isolate Nodule
69 2965040258 Mesorhizobium sp. M7A.F.Ca.CA.001.06.1.1 Isolate Nodule
70 2965047637 Mesorhizobium sp. M7A.F.Ca.US.014.04.1.1 Isolate Nodule
71 2965089291 Mesorhizobium sp. M7A.F.Ca.CA.001.04.1.1 Isolate Nodule
72 2965110997 Mesorhizobium sp. M7A.F.Ca.US.003.02.2.1 Isolate Nodule
73 2968138860 Mesorhizobium sp. M7A.F.Ca.ET.027.03.2.1 Isolate Nodule
74 2970489779 Mesorhizobium sp. M7A.F.Ca.US.008.03.1.1 Isolate Nodule
75 2970510686 Mesorhizobium sp. M7A.F.Ca.MR.148.00.0.0 Isolate Nodule
76 2970532167 Mesorhizobium sp. M7A.F.Ca.CA.002.05.1.1 Isolate Nodule
77 2970547951 Mesorhizobium sp. M7A.F.Ca.AU.002.04.1.1 Isolate Nodule
78 2970619444 Mesorhizobium sp. M7A.F.Ca.ET.027.02.1.1 Isolate Nodule
79 2970627176 Mesorhizobium sp. M7A.F.Ca.US.006.01.2.1 Isolate Nodule
80 2977851361 Mesorhizobium sp. M7A.F.Ca.CA.004.06.2.1 Isolate Nodule
81 2977872689 Mesorhizobium sp. M7A.F.Ca.US.001.04.1.1 Isolate Nodule
82 2977898635 Mesorhizobium sp. M7A.T.Ca.TU.009.01.3.1 Isolate Nodule
83 2977907340 Mesorhizobium sp. M7A.F.Ca.CA.004.12.1.1 Isolate Nodule
84 2977915119 Mesorhizobium sp. M7A.F.Ca.CA.001.09.2.1 Isolate Nodule
85 2977935797 Mesorhizobium sp. M7A.F.Ca.CA.002.12.1.1 Isolate Nodule
86 2977950692 Mesorhizobium sp. M7A.F.Ca.CA.001.04.2.1 Isolate Nodule
87 2977957713 Mesorhizobium sp. M7A.F.Ca.US.001.02.1.1 Isolate Nodule
88 2979764755 Mesorhizobium sp. M7A.F.Ca.CA.004.05.2.1 Isolate Nodule
89 2979772303 Mesorhizobium sp. M7A.F.Ca.CA.004.04.1.1 Isolate Nodule
90 2979793036 Mesorhizobium sp. M7A.F.Ca.US.007.01.1.1 Isolate Nodule
91 2987645492 Mesorhizobium sp. M7A.F.Ca.CA.002.10.1.1 Isolate Nodule
92 2990275345 Bacillus sp. SLBN-46 Isolate Unclassified
93 2996386984 Mesorhizobium sp. M7A.F.Ca.MR.245.00.0.0 Isolate Nodule
94 3001272096 Lederbergia citrisecunda FJAT-49732 Isolate Rhizosphere
95 3004195979 Mesorhizobium sp. M7A.F.Ca.CA.001.08.2.1 Isolate Nodule
96 3004232784 Mesorhizobium sp. M7A.T.Ca.US.000.02.1.1 Isolate Nodule
97 3004248173 Mesorhizobium sp. M7A.F.Ca.CA.004.06.1.1 Isolate Nodule
98 3004268573 Mesorhizobium sp. M7A.F.Ca.US.010.02.1.1 Isolate Nodule
99 3004334049 Mesorhizobium huakuii 583 Isolate Unclassified
100 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
101 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
102 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
103 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
104 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
105 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
106 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
107 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
108 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
109 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
110 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
111 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
112 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
113 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
114 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
115 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
116 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
117 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
118 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
119 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
120 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
121 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
122 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
123 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
124 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
125 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
126 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
127 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
128 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
129 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
130 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
131 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
132 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
133 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
134 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
135 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
136 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
137 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
138 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
139 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
140 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
141 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
142 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
143 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
144 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
145 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
146 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
147 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
148 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
149 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
150 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
151 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
152 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
153 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
154 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
155 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
156 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
157 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
158 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
159 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
160 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
161 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
162 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
163 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
164 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
165 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
166 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
167 3300042134 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_070716_126 Metagenome Rhizosphere
168 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
169 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
170 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
171 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
172 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
173 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
174 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
175 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
176 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
177 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
178 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
179 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
180 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
181 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
182 3300049528 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
183 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
184 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
185 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
186 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
187 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
188 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
189 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
190 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
191 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
192 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
193 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
194 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
195 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
196 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
197 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
198 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
199 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
200 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
201 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
202 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
203 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
204 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
205 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
206 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
207 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
208 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
209 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
210 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
211 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
212 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
213 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
214 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
215 3300059631 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 168R_SD_T3_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
216 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
217 646564506 Arcobacter nitrofigilis DSM 7299 Isolate Unclassified
218 649633066 Mesorhizobium ciceri bv. biserrulae WSM1271 Isolate Nodule
219 8004300914 Mesorhizobium sp. M7A.F.Ca.CA.002.07.1.1 Isolate Nodule
220 8004312739 Mesorhizobium sp. M7A.F.Ca.MR.362.00.0.0 Isolate Nodule
221 8004361976 Mesorhizobium sp. M7A.F.Ca.CA.001.08.1.1 Isolate Nodule
222 8004695233 Mesorhizobium sp. M7A.F.Ca.US.001.01.1.1 Isolate Nodule
223 8004727605 Mesorhizobium sp. M7A.F.Ca.CA.004.01.1.1 Isolate Nodule
224 8056533031 Paenibacillus qinlingensis TEGT-2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 57.47
Metatranscriptomes 1.15
Isolates 41.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.21
Nodule 32.95
Rhizoplane 1.53
Rhizosphere 40.61
Stem 0
Stem Tuber 0
Unclassified 20.69

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10001854 3300003316 Bacteria 36865
2 rootH1_10001854 3300003323 Bacteria 9155
3 rootH1_10004377 3300003316 Bacteria 3517
4 rootH1_10070161 3300003316 Bacteria 3025
5 rootH1_10169627 3300003316 Unclassified 1397
6 rootH2_10000025 3300003320 Bacteria 71863
7 rootH2_10310984 3300003320 Bacteria 2247
8 rootL2_10052642 3300003322 Bacteria 20898
9 rootL2_10169934 3300003322 Unclassified 2874
10 rootL2_10245656 3300003322 Bacteria 2242
11 rootL2_10247541 3300003322 Bacteria 1480
12 rootL2_10251006 3300003322 Unclassified 1763
13 rootH1_10003808 3300003323 Bacteria 79684
14 rootH1_10006674 3300003323 Bacteria 26593
15 rootH1_10008582 3300003323 Bacteria 172664
16 rootH1_10047352 3300003323 Bacteria 26752
17 rootH1_10304654 3300003323 Bacteria 3954
18 Ga0055531_10000048 3300003794 Bacteria 131142
19 Ga0070669_100067928 3300005353 Bacteria 2630
20 Ga0070675_100202929 3300005354 Bacteria 1721
21 Ga0070671_100011306 3300005355 Bacteria 7173
22 Ga0070700_100000016 3300005441 Bacteria 147213
23 Ga0070698_100055356 3300005471 Bacteria 4023
24 Ga0068855_100058449 3300005563 Bacteria 4516
25 Ga0068863_100045631 3300005841 Bacteria 4159
26 Ga0068858_100429370 3300005842 Bacteria 1271
27 Ga0068862_100014465 3300005844 Bacteria 6548
28 Ga0068862_100298520 3300005844 Bacteria 1481
29 Ga0081540_1029706 3300005983 Bacteria 3040
30 Ga0075366_10136541 3300006195 Bacteria 1481
31 Ga0097621_100001682 3300006237 Bacteria 15130
32 Ga0079104_1000246 3300006946 Bacteria 72294
33 Ga0105251_10001488 3300009011 Bacteria 20104
34 Ga0105251_10024133 3300009011 Bacteria 3126
35 Ga0105244_10012462 3300009036 Bacteria 5021
36 Ga0105240_10042936 3300009093 Bacteria 5759
37 Ga0114129_10108795 3300009147 Bacteria 3826
38 Ga0105242_10041668 3300009176 Bacteria 3705
39 Ga0105237_10018699 3300009545 Bacteria 7164
40 Ga0105237_10130282 3300009545 Bacteria 2510
41 Ga0105238_10333990 3300009551 Bacteria 1503
42 Ga0105249_10044713 3300009553 Bacteria 4026
43 Ga0105249_10065910 3300009553 Bacteria 3333
44 Ga0105239_10000019 3300010375 Bacteria 273836
45 Ga0105239_10142767 3300010375 Bacteria 2669
46 Ga0157378_10003577 3300013297 Bacteria 13761
47 Ga0163162_10000214 3300013306 Bacteria 53543
48 Ga0157372_10001076 3300013307 Bacteria 29784
49 Ga0157372_10019507 3300013307 Bacteria 7311
50 Ga0157375_10000125 3300013308 Bacteria 75607
51 Ga0157380_10241803 3300014326 Bacteria 1628
52 Ga0182008_10012092 3300014497 Bacteria 4565
53 Ga0157379_10037795 3300014968 Bacteria 4306
54 Ga0157376_10001644 3300014969 Bacteria 14841
55 Ga0163161_10000612 3300017792 Bacteria 28547
56 Ga0209646_1001209 3300025246 Bacteria 7399
57 Ga0209025_1004639 3300025294 Bacteria 11755
58 Ga0209025_1006901 3300025294 Bacteria 8654
59 Ga0209257_1000007 3300025304 Bacteria 1564415
60 Ga0207695_10056358 3300025913 Bacteria 4089
61 Ga0207671_10002741 3300025914 Bacteria 18419
62 Ga0207671_10195963 3300025914 Bacteria 1576
63 Ga0207681_10021087 3300025923 Bacteria 4137
64 Ga0207644_10005135 3300025931 Bacteria 8553
65 Ga0207667_10047886 3300025949 Bacteria 4522
66 Ga0207667_10296316 3300025949 Bacteria 1652
67 Ga0207712_10034126 3300025961 Bacteria 3445
68 Ga0207703_10381428 3300026035 Bacteria 1304
69 Ga0207708_10000005 3300026075 Bacteria 284735
70 Ga0207641_10104641 3300026088 Bacteria 2499
71 Ga0209281_1000052 3300027111 Bacteria 314741
72 Ga0268265_10003985 3300028380 Bacteria 10401
73 Ga0268265_10367420 3300028380 Bacteria 1319
74 Ga0265323_10000299 3300028653 Bacteria 28605
75 Ga0265325_10088608 3300031241 Bacteria 1529
76 Ga0265316_10031585 3300031344 Bacteria 4328
77 Ga0307509_10000009 3300031507 Bacteria 350890
78 Ga0307408_100001023 3300031548 Bacteria 21491
79 Ga0316576_10018158 3300031727 Bacteria 4795
80 Ga0316593_10003686 3300032168 Bacteria 3836
81 Ga0400484_41729 3300038725 Bacteria 3534
82 Ga0400490_30897 3300038726 Bacteria 40161
83 Ga0400490_59474 3300038726 Bacteria 17699
84 Ga0400488_19237 3300038741 Bacteria 2835
85 Ga0400488_55498 3300038741 Bacteria 5236
86 Ga0400486_13402 3300038742 Bacteria 1828
87 Ga0400483_000572 3300039062 Bacteria 1771
88 Ga0400483_006099 3300039062 Bacteria 5722
89 Ga0400483_015473 3300039062 Bacteria 13413
90 Ga0400483_063175 3300039062 Bacteria 22682
91 Ga0400483_086838 3300039062 Bacteria 8344
92 Ga0400483_261384 3300039062 Bacteria 2398
93 Ga0400483_270891 3300039062 Bacteria 1479
94 Ga0400489_05543 3300039093 Bacteria 5465
95 Ga0400487_58215 3300039110 Bacteria 15734
96 Ga0451789_0112874 3300041443 Bacteria 1393
97 Ga0451841_0119264 3300041498 Bacteria 1400
98 Ga0439449_0009356 3300042007 Bacteria 3715
99 Ga0439449_0013780 3300042007 Bacteria 3042
100 Ga0450898_010066 3300042134 Unclassified 1525
101 Ga0439434_0034160 3300042435 Bacteria 1552
102 Ga0466972_0000157 3300044658 Bacteria 54726
103 Ga0453684_0001723 3300044712 Bacteria 58623
104 Ga0453684_0003472 3300044712 Bacteria 35393
105 Ga0453684_0076922 3300044712 Bacteria 4187
106 Ga0453684_0255051 3300044712 Bacteria 2012
107 Ga0451576_0071489 3300045051 Bacteria 3611
108 Ga0495592_0001781 3300046454 Bacteria 15158
109 Ga0495628_0000135 3300046516 Bacteria 62985
110 Ga0495663_0000411 3300046525 Bacteria 15636
111 Ga0495649_0005475 3300046694 Bacteria 8066
112 Ga0495684_0210279 3300047471 Bacteria 1431
113 Ga0495686_0091370 3300047472 Bacteria 1848
114 Ga0496100_0172410 3300048903 Bacteria 1559
115 Ga0496110_0059241 3300048913 Bacteria 3374
116 Ga0496112_0147224 3300048915 Bacteria 2323
117 Ga0496116_0008396 3300048919 Bacteria 8967
118 Ga0501312_002450 3300049528 Bacteria 2004
119 Ga0501032_0110563 3300049569 Bacteria 1818
120 Ga0501033_0051378 3300049570 Bacteria 3055
121 Ga0501034_0025734 3300049571 Bacteria 5992
122 Ga0501034_0038929 3300049571 Bacteria 4816
123 Ga0501034_0286799 3300049571 Bacteria 1585
124 Ga0501036_0239324 3300049572 Bacteria 1522
125 Ga0501037_0022495 3300049573 Bacteria 4663
126 Ga0501038_0167160 3300049574 Bacteria 1783
127 Ga0501039_0089152 3300049575 Bacteria 2403
128 Ga0501040_0019338 3300049576 Bacteria 4529
129 Ga0501042_0241508 3300049578 Bacteria 1303
130 Ga0501043_0015957 3300049579 Bacteria 5887
131 Ga0501046_0015717 3300049580 Bacteria 6352
132 Ga0501047_0023812 3300049581 Bacteria 5878
133 Ga0501067_0003624 3300049583 Bacteria 8506
134 Ga0501068_0057490 3300049584 Bacteria 2358
135 Ga0501069_0000313 3300049585 Bacteria 22146
136 Ga0501070_0035737 3300049586 Bacteria 4149
137 Ga0501072_0018720 3300049588 Bacteria 5339
138 Ga0501073_0273070 3300049589 Bacteria 1166
139 Ga0501076_0275758 3300049592 Bacteria 1377
140 Ga0501198_002880 3300049649 Bacteria 2340
141 Ga0501225_0000949 3300049705 Bacteria 9061
142 Ga0501081_0033011 3300049743 Bacteria 3515
143 Ga0501083_0001442 3300049744 Bacteria 16228
144 Ga0501035_0027826 3300049822 Bacteria 5166
145 nmdc:mga05p37_189523_c1 3300050507 Bacteria 2498
146 Ga0500578_0000001 3300053086 Bacteria 317120
147 Ga0500646_0009461 3300053090 Bacteria 2495
148 Ga0500583_0000750 3300053092 Bacteria 9403
149 Ga0500642_0140258 3300053130 Bacteria 1134
150 Ga0500589_006398 3300053147 Bacteria 4708
151 Ga0500604_0019898 3300053151 Bacteria 1884
152 Ga0501084_0045691 3300054114 Bacteria 3666
153 Ga0587130_001241 3300059631 Bacteria 1878
154 Ga0530510_0159981 3300061734 Bacteria 1666

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2977898635 2977898764 272
2 iso_pu_bacteria 3004268573 3004268585 275
3 3300038741 Ga0400488_19237 Ga0400488_19237_11_904 289
4 iso_pu_bacteria 2874109183 2874113122 289
5 3300044712 Ga0453684_0255051 Ga0453684_0255051_849_1871 304
6 iso_pu_bacteria 2924733363 2924734857 306
7 3300006946 Ga0079104_1000246 Ga0079104_100024624 308
8 3300027111 Ga0209281_1000052 Ga0209281_1000052259 308
9 3300009551 Ga0105238_10333990 Ga0105238_103339901 313
10 3300045051 Ga0451576_0071489 Ga0451576_0071489_230_1198 313
11 3300047471 Ga0495684_0210279 Ga0495684_0210279_40_1119 316
12 iso_pu_bacteria 2842882022 2842885614 317
13 iso_pu_bacteria 3001272096 3001274884 317
14 3300005353 Ga0070669_100067928 Ga0070669_1000679282 318
15 3300005842 Ga0068858_100429370 Ga0068858_1004293702 318
16 3300025923 Ga0207681_10021087 Ga0207681_100210873 318
17 iso_pu_bacteria 2576861424 2578338221 318
18 iso_pu_bacteria 2808606364 2808870578 318
19 3300009011 Ga0105251_10024133 Ga0105251_100241333 319
20 iso_pu_bacteria 8056533031 8056533045 319
21 3300025294 Ga0209025_1006901 Ga0209025_10069019 320
22 iso_pu_bacteria 2857604169 2857607488 320
23 iso_pu_bacteria 2990275345 2990276218 320
24 iso_pu_bacteria 8004695233 8004697174 320
25 3300048919 Ga0496116_0008396 Ga0496116_0008396_6862_7902 321
26 iso_pu_bacteria 2936361878 2936362845 321
27 3300005354 Ga0070675_100202929 Ga0070675_1002029292 322
28 3300009553 Ga0105249_10065910 Ga0105249_100659102 322
29 3300014326 Ga0157380_10241803 Ga0157380_102418031 322
30 3300026035 Ga0207703_10381428 Ga0207703_103814282 322
31 iso_pu_bacteria 2509276022 2509395444 322
32 iso_pu_bacteria 2648501241 2649122148 322
33 iso_pu_bacteria 2651869818 2652976880 322
34 iso_pu_bacteria 2671180330 2672336167 322
35 iso_pu_bacteria 2816332186 2816864645 322
36 iso_pu_bacteria 2842682962 2842683478 322
37 iso_pu_bacteria 2744054655 2745159360 323
38 iso_pu_bacteria 2908669403 2908672316 323
39 3300049528 Ga0501312_002450 Ga0501312_002450_705_1784 324
40 iso_pu_bacteria 2509276018 2509370904 324
41 iso_pu_bacteria 2509276022 2509397981 324
42 iso_pu_bacteria 2510065059 2510316552 324
43 iso_pu_bacteria 2643221595 2643989093 324
44 iso_pu_bacteria 2643221627 2644152289 324
45 iso_pu_bacteria 2687453392 2688600381 324
46 iso_pu_bacteria 2844009547 2844015702 324
47 iso_pu_bacteria 2856328259 2856328674 324
48 iso_pu_bacteria 2856334872 2856337479 324
49 iso_pu_bacteria 2857367948 2857368436 324
50 iso_pu_bacteria 2869169390 2869172667 324
51 iso_pu_bacteria 2869234852 2869241216 324
52 iso_pu_bacteria 2869242130 2869246533 324
53 iso_pu_bacteria 2869249662 2869250515 324
54 iso_pu_bacteria 2869256925 2869262230 324
55 iso_pu_bacteria 2869264136 2869265827 324
56 iso_pu_bacteria 2869271264 2869278574 324
57 iso_pu_bacteria 2871466892 2871470089 324
58 iso_pu_bacteria 2871481445 2871483075 324
59 iso_pu_bacteria 2874116593 2874123132 324
60 iso_pu_bacteria 2874131515 2874138979 324
61 iso_pu_bacteria 2874162495 2874166641 324
62 iso_pu_bacteria 2876386047 2876387382 324
63 iso_pu_bacteria 2876399893 2876403975 324
64 iso_pu_bacteria 2876406927 2876408629 324
65 iso_pu_bacteria 2876420981 2876423842 324
66 iso_pu_bacteria 2878730984 2878734304 324
67 iso_pu_bacteria 2906363423 2906365400 324
68 iso_pu_bacteria 2906370794 2906375044 324
69 iso_pu_bacteria 2906378014 2906381457 324
70 iso_pu_bacteria 2906393657 2906400380 324
71 iso_pu_bacteria 2906401398 2906406519 324
72 iso_pu_bacteria 2906408224 2906409940 324
73 iso_pu_bacteria 2906427513 2906428597 324
74 iso_pu_bacteria 2919497567 2919498554 324
75 iso_pu_bacteria 2922151315 2922156216 324
76 iso_pu_bacteria 2922172374 2922178102 324
77 iso_pu_bacteria 2922178524 2922181519 324
78 iso_pu_bacteria 2924710171 2924711939 324
79 iso_pu_bacteria 2924741084 2924743899 324
80 iso_pu_bacteria 2924748358 2924753058 324
81 iso_pu_bacteria 2937861824 2937867058 324
82 iso_pu_bacteria 2937868953 2937869067 324
83 iso_pu_bacteria 2937980651 2937987883 324
84 iso_pu_bacteria 2958122699 2958125963 324
85 iso_pu_bacteria 2958137437 2958138164 324
86 iso_pu_bacteria 2961136820 2961144609 324
87 iso_pu_bacteria 2961183825 2961184651 324
88 iso_pu_bacteria 2965025482 2965026294 324
89 iso_pu_bacteria 2965032056 2965040250 324
90 iso_pu_bacteria 2965040258 2965040471 324
91 iso_pu_bacteria 2965047637 2965048288 324
92 iso_pu_bacteria 2965089291 2965089510 324
93 iso_pu_bacteria 2965110997 2965113668 324
94 iso_pu_bacteria 2968138860 2968143136 324
95 iso_pu_bacteria 2970489779 2970494672 324
96 iso_pu_bacteria 2970510686 2970514568 324
97 iso_pu_bacteria 2970532167 2970535681 324
98 iso_pu_bacteria 2970547951 2970550703 324
99 iso_pu_bacteria 2970619444 2970621923 324
100 iso_pu_bacteria 2970627176 2970633495 324
101 iso_pu_bacteria 2977851361 2977857572 324
102 iso_pu_bacteria 2977872689 2977874936 324
103 iso_pu_bacteria 2977907340 2977915100 324
104 iso_pu_bacteria 2977915119 2977920391 324
105 iso_pu_bacteria 2977935797 2977940462 324
106 iso_pu_bacteria 2977950692 2977954185 324
107 iso_pu_bacteria 2977957713 2977961233 324
108 iso_pu_bacteria 2979764755 2979765106 324
109 iso_pu_bacteria 2979772303 2979776387 324
110 iso_pu_bacteria 2979793036 2979793814 324
111 iso_pu_bacteria 2987645492 2987646451 324
112 iso_pu_bacteria 2996386984 2996391909 324
113 iso_pu_bacteria 3004195979 3004202270 324
114 iso_pu_bacteria 3004232784 3004233194 324
115 iso_pu_bacteria 3004248173 3004250652 324
116 iso_pu_bacteria 649633066 649874839 324
117 iso_pu_bacteria 8004300914 8004305041 324
118 iso_pu_bacteria 8004312739 8004314050 324
119 iso_pu_bacteria 8004361976 8004366938 324
120 iso_pu_bacteria 8004727605 8004734158 324
121 3300039062 Ga0400483_015473 Ga0400483_015473_232_1233 325
122 iso_pu_bacteria 2919493220 2919494274 325
123 3300044712 Ga0453684_0076922 Ga0453684_0076922_1743_2792 326
124 3300048913 Ga0496110_0059241 Ga0496110_0059241_528_1532 326
125 3300005441 Ga0070700_100000016 Ga0070700_10000001655 327
126 3300009036 Ga0105244_10012462 Ga0105244_100124624 327
127 3300026075 Ga0207708_10000005 Ga0207708_1000000555 327
128 3300031727 Ga0316576_10018158 Ga0316576_100181582 327
129 3300032168 Ga0316593_10003686 Ga0316593_100036863 327
130 3300038725 Ga0400484_41729 Ga0400484_41729_1706_2713 327
131 3300038726 Ga0400490_30897 Ga0400490_30897_23830_24837 327
132 3300038726 Ga0400490_59474 Ga0400490_59474_6229_7236 327
133 3300038741 Ga0400488_55498 Ga0400488_55498_2567_3574 327
134 3300039062 Ga0400483_000572 Ga0400483_000572_52_1104 327
135 3300039062 Ga0400483_006099 Ga0400483_006099_14_1021 327
136 3300039062 Ga0400483_063175 Ga0400483_063175_8806_9813 327
137 3300039062 Ga0400483_270891 Ga0400483_270891_399_1406 327
138 3300039093 Ga0400489_05543 Ga0400489_05543_1302_2309 327
139 3300039110 Ga0400487_58215 Ga0400487_58215_9449_10456 327
140 3300046525 Ga0495663_0000411 Ga0495663_0000411_1921_2943 327
141 3300049569 Ga0501032_0110563 Ga0501032_0110563_131_1138 327
142 3300049570 Ga0501033_0051378 Ga0501033_0051378_681_1688 327
143 3300049571 Ga0501034_0025734 Ga0501034_0025734_3536_4543 327
144 3300049572 Ga0501036_0239324 Ga0501036_0239324_385_1392 327
145 3300049573 Ga0501037_0022495 Ga0501037_0022495_1450_2457 327
146 3300049574 Ga0501038_0167160 Ga0501038_0167160_717_1724 327
147 3300049575 Ga0501039_0089152 Ga0501039_0089152_717_1724 327
148 3300049576 Ga0501040_0019338 Ga0501040_0019338_17_1024 327
149 3300049578 Ga0501042_0241508 Ga0501042_0241508_130_1137 327
150 3300049579 Ga0501043_0015957 Ga0501043_0015957_3504_4511 327
151 3300049580 Ga0501046_0015717 Ga0501046_0015717_4097_5104 327
152 3300049581 Ga0501047_0023812 Ga0501047_0023812_1368_2375 327
153 3300049583 Ga0501067_0003624 Ga0501067_0003624_4571_5578 327
154 3300049584 Ga0501068_0057490 Ga0501068_0057490_839_1846 327
155 3300049585 Ga0501069_0000313 Ga0501069_0000313_19723_20730 327
156 3300049586 Ga0501070_0035737 Ga0501070_0035737_717_1724 327
157 3300049588 Ga0501072_0018720 Ga0501072_0018720_1908_2915 327
158 3300049589 Ga0501073_0273070 Ga0501073_0273070_60_1067 327
159 3300049592 Ga0501076_0275758 Ga0501076_0275758_88_1095 327
160 3300049649 Ga0501198_002880 Ga0501198_002880_857_1864 327
161 3300049743 Ga0501081_0033011 Ga0501081_0033011_294_1301 327
162 3300049822 Ga0501035_0027826 Ga0501035_0027826_624_1631 327
163 3300054114 Ga0501084_0045691 Ga0501084_0045691_2425_3432 327
164 3300061734 Ga0530510_0159981 Ga0530510_0159981_44_1051 327
165 iso_pu_bacteria 2738541278 2738730688 327
166 iso_pu_bacteria 3004334049 3004339130 327
167 3300003320 rootH2_10000025 rootH2_1000002541 328
168 3300005563 Ga0068855_100058449 Ga0068855_1000584493 328
169 3300005983 Ga0081540_1029706 Ga0081540_10297062 328
170 3300009011 Ga0105251_10001488 Ga0105251_1000148810 328
171 3300009093 Ga0105240_10042936 Ga0105240_100429364 328
172 3300009545 Ga0105237_10018699 Ga0105237_100186992 328
173 3300010375 Ga0105239_10000019 Ga0105239_10000019180 328
174 3300013307 Ga0157372_10001076 Ga0157372_100010763 328
175 3300025913 Ga0207695_10056358 Ga0207695_100563583 328
176 3300025914 Ga0207671_10195963 Ga0207671_101959632 328
177 3300025949 Ga0207667_10047886 Ga0207667_100478863 328
178 3300038742 Ga0400486_13402 Ga0400486_13402_801_1811 328
179 3300039062 Ga0400483_086838 Ga0400483_086838_499_1509 328
180 3300039062 Ga0400483_261384 Ga0400483_261384_58_1068 328
181 3300046694 Ga0495649_0005475 Ga0495649_0005475_3803_4816 328
182 3300028653 Ga0265323_10000299 Ga0265323_1000029920 329
183 3300031344 Ga0265316_10031585 Ga0265316_100315855 329
184 3300031507 Ga0307509_10000009 Ga0307509_10000009152 329
185 3300049571 Ga0501034_0286799 Ga0501034_0286799_420_1478 329
186 iso_pu_bacteria 2844002411 2844005515 329
187 3300003323 rootH1_10304654 rootH1_103046542 330
188 3300025294 Ga0209025_1004639 Ga0209025_10046398 330
189 3300047472 Ga0495686_0091370 Ga0495686_0091370_508_1569 330
190 iso_pu_bacteria 2849139964 2849144041 330
191 3300003322 rootL2_10245656 rootL2_102456562 331
192 3300003322 rootL2_10251006 rootL2_102510062 331
193 3300003323 rootH1_10003808 rootH1_1000380826 331
194 3300005355 Ga0070671_100011306 Ga0070671_1000113066 331
195 3300005471 Ga0070698_100055356 Ga0070698_1000553562 331
196 3300005841 Ga0068863_100045631 Ga0068863_1000456313 331
197 3300006195 Ga0075366_10136541 Ga0075366_101365412 331
198 3300006237 Ga0097621_100001682 Ga0097621_10000168210 331
199 3300009147 Ga0114129_10108795 Ga0114129_101087952 331
200 3300009176 Ga0105242_10041668 Ga0105242_100416683 331
201 3300009545 Ga0105237_10130282 Ga0105237_101302822 331
202 3300010375 Ga0105239_10142767 Ga0105239_101427672 331
203 3300013297 Ga0157378_10003577 Ga0157378_1000357714 331
204 3300013306 Ga0163162_10000214 Ga0163162_1000021423 331
205 3300013307 Ga0157372_10019507 Ga0157372_100195075 331
206 3300013308 Ga0157375_10000125 Ga0157375_1000012526 331
207 3300014497 Ga0182008_10012092 Ga0182008_100120924 331
208 3300014968 Ga0157379_10037795 Ga0157379_100377954 331
209 3300014969 Ga0157376_10001644 Ga0157376_100016447 331
210 3300017792 Ga0163161_10000612 Ga0163161_1000061222 331
211 3300025246 Ga0209646_1001209 Ga0209646_10012095 331
212 3300025914 Ga0207671_10002741 Ga0207671_100027413 331
213 3300025931 Ga0207644_10005135 Ga0207644_100051352 331
214 3300025949 Ga0207667_10296316 Ga0207667_102963162 331
215 3300026088 Ga0207641_10104641 Ga0207641_101046412 331
216 3300031241 Ga0265325_10088608 Ga0265325_100886082 331
217 3300031548 Ga0307408_100001023 Ga0307408_10000102310 331
218 3300041443 Ga0451789_0112874 Ga0451789_0112874_209_1297 331
219 3300041498 Ga0451841_0119264 Ga0451841_0119264_192_1280 331
220 3300042007 Ga0439449_0009356 Ga0439449_0009356_1967_3061 331
221 3300042007 Ga0439449_0013780 Ga0439449_0013780_16_1101 331
222 3300042134 Ga0450898_010066 Ga0450898_010066_46_1131 331
223 3300042435 Ga0439434_0034160 Ga0439434_0034160_331_1416 331
224 3300044658 Ga0466972_0000157 Ga0466972_0000157_45705_46781 331
225 3300044712 Ga0453684_0003472 Ga0453684_0003472_7215_8279 331
226 3300046454 Ga0495592_0001781 Ga0495592_0001781_5697_6821 331
227 3300046516 Ga0495628_0000135 Ga0495628_0000135_27068_28192 331
228 3300048903 Ga0496100_0172410 Ga0496100_0172410_130_1194 331
229 3300048915 Ga0496112_0147224 Ga0496112_0147224_265_1299 331
230 3300049571 Ga0501034_0038929 Ga0501034_0038929_2739_3767 331
231 3300049705 Ga0501225_0000949 Ga0501225_0000949_5488_6582 331
232 3300050507 nmdc:mga05p37_189523_c1 nmdc:mga05p37_189523_c1_880_1968 331
233 3300053086 Ga0500578_0000001 Ga0500578_0000001_29453_30529 331
234 3300053090 Ga0500646_0009461 Ga0500646_0009461_983_2071 331
235 3300053092 Ga0500583_0000750 Ga0500583_0000750_1153_2241 331
236 3300053130 Ga0500642_0140258 Ga0500642_0140258_39_1115 331
237 3300053147 Ga0500589_006398 Ga0500589_006398_2247_3335 331
238 3300059631 Ga0587130_001241 Ga0587130_001241_348_1424 331
239 3300003316 rootH1_10070161 rootH1_100701612 332
240 3300003322 rootL2_10169934 rootL2_101699342 332
241 3300003794 Ga0055531_10000048 Ga0055531_100000483 332
242 3300005844 Ga0068862_100014465 Ga0068862_1000144652 332
243 3300005844 Ga0068862_100298520 Ga0068862_1002985201 332
244 3300009553 Ga0105249_10044713 Ga0105249_100447132 332
245 3300025304 Ga0209257_1000007 Ga0209257_10000071305 332
246 3300025961 Ga0207712_10034126 Ga0207712_100341262 332
247 3300028380 Ga0268265_10003985 Ga0268265_100039852 332
248 3300028380 Ga0268265_10367420 Ga0268265_103674201 332
249 3300044712 Ga0453684_0001723 Ga0453684_0001723_30881_31903 332
250 iso_pu_bacteria 646564506 646814776 332
251 3300003316 rootH1_10169627 rootH1_101696271 333
252 3300003320 rootH2_10310984 rootH2_103109842 333
253 3300003323 rootH1_10006674 rootH1_1000667424 333
254 3300003323 rootH1_10008582 rootH1_10008582106 333
255 3300053151 Ga0500604_0019898 Ga0500604_0019898_507_1535 334
256 3300003316 rootH1_10001854 rootH1_1000185428 335
257 3300003316 rootH1_10004377 rootH1_100043772 335
258 3300003322 rootL2_10052642 rootL2_100526428 335
259 3300003322 rootL2_10247541 rootL2_102475412 335
260 3300003323 rootH1_10047352 rootH1_100473522 335
261 3300049744 Ga0501083_0001442 Ga0501083_0001442_1856_2893 335

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

24

298

0.94

PF04321

RmlD_sub_bind

RmlD substrate binding domain

22

281

0.84

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

25

325

0.76

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

25

361

0.75

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

24

272

0.74

Structural Annotation

Top 5 Hits

ID Description Score Start End
5u4q-assembly1.cif.gz_B 1.5 angstrom resolution crystal structure of nad-dependent epimerase from klebsiella pneumoniae in complex with nad. 0.9412 5 329
5u4q-assembly1.cif.gz_A 1.5 angstrom resolution crystal structure of nad-dependent epimerase from klebsiella pneumoniae in complex with nad. 0.9365 5 331
5u4q-assembly1.cif.gz_B 1.5 angstrom resolution crystal structure of nad-dependent epimerase from klebsiella pneumoniae in complex with nad. 0.9321 5 329
5u4q-assembly1.cif.gz_A 1.5 angstrom resolution crystal structure of nad-dependent epimerase from klebsiella pneumoniae in complex with nad. 0.9309 5 331
7ys8-assembly1.cif.gz_B crystal structure of udp-glucose 4-epimerase (rv3634c) from mycobacterium tuberculosis 0.8961 6 328
ID Description Score Start End Superfamily
5nahA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9586 5 36 3.50.50.60
5u4qA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9354 6 331 3.40.50.720
4m55E00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9333 7 186 3.40.50.720
4wokA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9311 5 185 3.40.50.720
5u4qA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9295 6 331 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A3D0MDG4-F1-model_v4 Capsular biosynthesis protein CpsI 1.001 6 76
AF-A0A2N1W8W4-F1-model_v4 Capsular biosynthesis protein CpsI 0.999 6 88
AF-A0A523M0X6-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9834 6 131
AF-A0A3M1HH98-F1-model_v4 SDR family NAD(P)-dependent oxidoreductase 0.9825 6 264
AF-A0A7C7MZJ3-F1-model_v4 NAD-dependent epimerase 0.9824 6 335

Feature Viewer

pLDDT pTM Quality
89.64 0.91 High
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Predicted Structure (AlphaFold2)

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