F369314

General Info

Members Datasets Scaffolds Average Seq Length
260 55 520 120

Family's Representative Sequence

Representative Sequence 3300005334|Ga0068869_101323999|Ga0068869_1013239991
Length 122
Sequence MNKKDLKKFKDILMERRQAITQLNESLSEQSVVCDPNDLPDEVDLASSETDQAINHKLRDRERILLRKIDKALKKIEEGDYGVCESCGDDIGVKRLEARPVTDLCIRCKEEQERREKAFAEE

Samples

Sample ID Description Type Environment
1 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
2 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
3 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
4 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
5 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
6 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
7 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
8 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
9 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
10 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
11 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
12 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
13 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
14 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
15 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
16 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
17 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
18 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
19 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
20 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
21 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
22 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
23 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
24 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
25 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
26 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
27 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
28 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
29 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
30 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
31 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
32 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
33 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
34 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
35 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
36 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
37 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
38 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
39 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
40 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
41 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
42 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
43 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
44 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
45 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
46 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
47 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
48 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
49 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
50 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
51 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
52 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
53 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
54 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
55 2740891818 Desulfofaba hansenii DSM 12642 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 83.85
Metatranscriptomes 15.77
Isolates 0.38

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.15
Nodule 0
Rhizoplane 0
Rhizosphere 81.54
Stem 0
Stem Tuber 0
Unclassified 20.77

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068869_101323999 3300005334 Bacteria 636
2 Ga0070667_100277565 3300005367 Unclassified 1504
3 Ga0068859_100884014 3300005617 Bacteria 979
4 Ga0068861_101218950 3300005719 Bacteria 728
5 Ga0068860_100025733 3300005843 Bacteria 5676
6 Ga0068860_100360442 3300005843 Unclassified 1432
7 Ga0075366_10661342 3300006195 Unclassified 648
8 Ga0075433_10680924 3300006852 Unclassified 901
9 Ga0097620_100883943 3300006931 Bacteria 979
10 Ga0105240_12769380 3300009093 Bacteria 505
11 Ga0111539_10361260 3300009094 Bacteria 1690
12 Ga0114129_11687048 3300009147 Bacteria 773
13 Ga0157375_13598725 3300013308 Bacteria 515
14 Ga0157379_10561338 3300014968 Bacteria 1063
15 Ga0207641_10598963 3300026088 Bacteria 1079
16 Ga0268264_10095196 3300028381 Bacteria 2576
17 Ga0268264_10132859 3300028381 Bacteria 2209
18 Ga0316575_10000082 3300031665 Bacteria 22890
19 Ga0316575_10003854 3300031665 Bacteria 5233
20 Ga0316575_10053023 3300031665 Bacteria 1615
21 Ga0316575_10097037 3300031665 Bacteria 1196
22 Ga0316575_10117760 3300031665 Unclassified 1086
23 Ga0316575_10198292 3300031665 Bacteria 835
24 Ga0316575_10216353 3300031665 Unclassified 799
25 Ga0316575_10521672 3300031665 Bacteria 516
26 Ga0316579_10000245 3300031691 Bacteria 16618
27 Ga0316579_10006271 3300031691 Unclassified 4844
28 Ga0316579_10009087 3300031691 Bacteria 4170
29 Ga0316579_10037205 3300031691 Bacteria 2247
30 Ga0316579_10069940 3300031691 Bacteria 1661
31 Ga0316579_10173028 3300031691 Bacteria 1044
32 Ga0316579_10248478 3300031691 Bacteria 860
33 Ga0316579_10318506 3300031691 Bacteria 752
34 Ga0316579_10555106 3300031691 Bacteria 556
35 Ga0316576_10000549 3300031727 Bacteria 17638
36 Ga0316576_10000916 3300031727 Bacteria 15051
37 Ga0316576_10002819 3300031727 Bacteria 10000
38 Ga0316576_10006569 3300031727 Bacteria 7254
39 Ga0316576_10046291 3300031727 Unclassified 3148
40 Ga0316576_10058838 3300031727 Bacteria 2812
41 Ga0316576_10060307 3300031727 Bacteria 2779
42 Ga0316576_10068882 3300031727 Bacteria 2608
43 Ga0316576_10078524 3300031727 Bacteria 2446
44 Ga0316576_10119233 3300031727 Bacteria 1981
45 Ga0316576_10127650 3300031727 Bacteria 1912
46 Ga0316576_10144627 3300031727 Bacteria 1790
47 Ga0316576_10156042 3300031727 Unclassified 1721
48 Ga0316576_10161879 3300031727 Unclassified 1688
49 Ga0316576_10275974 3300031727 Bacteria 1259
50 Ga0316576_10307868 3300031727 Bacteria 1183
51 Ga0316576_10657667 3300031727 Unclassified 762
52 Ga0316576_11317373 3300031727 Unclassified 508
53 Ga0316578_10001317 3300031728 Bacteria 9949
54 Ga0316578_10001767 3300031728 Bacteria 9065
55 Ga0316578_10003538 3300031728 Bacteria 7176
56 Ga0316578_10034643 3300031728 Bacteria 2899
57 Ga0316578_10039871 3300031728 Unclassified 2713
58 Ga0316578_10129660 3300031728 Bacteria 1517
59 Ga0316578_10188025 3300031728 Bacteria 1244
60 Ga0316578_10247707 3300031728 Bacteria 1069
61 Ga0316578_10388305 3300031728 Bacteria 828
62 Ga0316578_10535026 3300031728 Bacteria 689
63 Ga0316578_10636331 3300031728 Unclassified 623
64 Ga0316577_10000008 3300031733 Bacteria 41093
65 Ga0316577_10009563 3300031733 Bacteria 5218
66 Ga0316577_10010270 3300031733 Bacteria 5049
67 Ga0316577_10060582 3300031733 Bacteria 2112
68 Ga0316577_10078120 3300031733 Unclassified 1849
69 Ga0316577_10080466 3300031733 Unclassified 1821
70 Ga0316577_10105817 3300031733 Bacteria 1578
71 Ga0316577_10151867 3300031733 Bacteria 1305
72 Ga0316577_10187924 3300031733 Bacteria 1167
73 Ga0316583_10000835 3300032133 Bacteria 9809
74 Ga0316583_10006482 3300032133 Bacteria 4206
75 Ga0316583_10010577 3300032133 Unclassified 3327
76 Ga0316583_10022920 3300032133 Bacteria 2233
77 Ga0316583_10038197 3300032133 Bacteria 1702
78 Ga0316583_10085645 3300032133 Bacteria 1100
79 Ga0316583_10091008 3300032133 Bacteria 1064
80 Ga0316583_10129178 3300032133 Bacteria 881
81 Ga0316583_10169281 3300032133 Bacteria 760
82 Ga0316585_10000319 3300032137 Bacteria 10810
83 Ga0316585_10007618 3300032137 Bacteria 3127
84 Ga0316585_10013084 3300032137 Bacteria 2468
85 Ga0316585_10082041 3300032137 Bacteria 1050
86 Ga0316585_10090280 3300032137 Bacteria 1001
87 Ga0316585_10107564 3300032137 Unclassified 916
88 Ga0316585_10152370 3300032137 Bacteria 763
89 Ga0316585_10237386 3300032137 Bacteria 604
90 Ga0316580_10000380 3300032139 Bacteria 9990
91 Ga0316580_10008027 3300032139 Bacteria 3156
92 Ga0316580_10029531 3300032139 Bacteria 1696
93 Ga0316580_10294134 3300032139 Unclassified 504
94 Ga0316580_10298949 3300032139 Bacteria 500
95 Ga0316593_10051730 3300032168 Unclassified 1389
96 Ga0316593_10053990 3300032168 Bacteria 1363
97 Ga0316593_10058288 3300032168 Bacteria 1317
98 Ga0316593_10063920 3300032168 Bacteria 1263
99 Ga0316593_10075193 3300032168 Bacteria 1172
100 Ga0316593_10076595 3300032168 Bacteria 1162
101 Ga0316593_10106601 3300032168 Bacteria 998
102 Ga0316593_10203835 3300032168 Bacteria 732
103 Ga0316593_10211734 3300032168 Bacteria 718
104 Ga0316593_10313484 3300032168 Unclassified 595
105 Ga0316593_10425015 3300032168 Unclassified 516
106 Ga0316592_1031309 3300033524 Bacteria 1158
107 Ga0316592_1081067 3300033524 Bacteria 738
108 Ga0316592_1127110 3300033524 Bacteria 594
109 Ga0316592_1133843 3300033524 Bacteria 579
110 Ga0316592_1178195 3300033524 Unclassified 508
111 Ga0316586_1081359 3300033527 Bacteria 605
112 Ga0316588_1017229 3300033528 Bacteria 1609
113 Ga0316588_1023206 3300033528 Bacteria 1422
114 Ga0316588_1042765 3300033528 Bacteria 1086
115 Ga0316588_1080295 3300033528 Unclassified 807
116 Ga0316588_1135827 3300033528 Bacteria 627
117 Ga0316588_1181101 3300033528 Unclassified 547
118 Ga0316588_1200595 3300033528 Bacteria 521
119 Ga0316587_1022262 3300033529 Bacteria 1086
120 Ga0316587_1042980 3300033529 Unclassified 818
121 Ga0316587_1054424 3300033529 Bacteria 736
122 Ga0316587_1059133 3300033529 Bacteria 709
123 Ga0316587_1071021 3300033529 Unclassified 652
124 Ga0316587_1077265 3300033529 Bacteria 627
125 Ga0316587_1085940 3300033529 Bacteria 597
126 Ga0316596_1017037 3300033541 Bacteria 1824
127 Ga0316596_1033382 3300033541 Bacteria 1341
128 Ga0316596_1046581 3300033541 Bacteria 1145
129 Ga0316596_1074975 3300033541 Bacteria 907
130 Ga0316596_1088473 3300033541 Bacteria 834
131 Ga0316596_1128559 3300033541 Bacteria 691
132 Ga0316596_1130540 3300033541 Bacteria 686
133 Ga0316596_1174284 3300033541 Unclassified 594
134 Ga0316596_1176894 3300033541 Unclassified 590
135 Ga0316596_1229761 3300033541 Bacteria 520
136 Ga0316574_0000206 3300035398 Bacteria 20749
137 Ga0316574_0009767 3300035398 Bacteria 5391
138 Ga0316574_0018602 3300035398 Bacteria 4086
139 Ga0316574_0019076 3300035398 Bacteria 4042
140 Ga0316574_0043021 3300035398 Bacteria 2789
141 Ga0316574_0080395 3300035398 Bacteria 2068
142 Ga0316574_0086025 3300035398 Unclassified 2000
143 Ga0316574_0196829 3300035398 Bacteria 1295
144 Ga0316574_0249077 3300035398 Bacteria 1135
145 Ga0316574_0258747 3300035398 Bacteria 1111
146 Ga0316574_0311575 3300035398 Bacteria 1000
147 Ga0316574_0492693 3300035398 Bacteria 765
148 Ga0316574_0609099 3300035398 Bacteria 674
149 Ga0316574_0690470 3300035398 Unclassified 626
150 Ga0316582_0000358 3300036647 Bacteria 16239
151 Ga0316582_0008536 3300036647 Bacteria 5514
152 Ga0316582_0027784 3300036647 Unclassified 3421
153 Ga0316582_0050259 3300036647 Bacteria 2640
154 Ga0316582_0051979 3300036647 Bacteria 2603
155 Ga0316582_0081575 3300036647 Bacteria 2113
156 Ga0316582_0086144 3300036647 Bacteria 2060
157 Ga0316582_0097236 3300036647 Bacteria 1945
158 Ga0316582_0100352 3300036647 Unclassified 1916
159 Ga0316582_0194342 3300036647 Bacteria 1383
160 Ga0316582_0227133 3300036647 Bacteria 1277
161 Ga0316582_0248254 3300036647 Unclassified 1219
162 Ga0316582_0382746 3300036647 Unclassified 969
163 Ga0316582_0477889 3300036647 Bacteria 859
164 Ga0316582_0563406 3300036647 Bacteria 785
165 Ga0316582_0596099 3300036647 Bacteria 761
166 Ga0316582_0624721 3300036647 Unclassified 741
167 Ga0316582_0865604 3300036647 Bacteria 618
168 Ga0316584_0000005 3300036712 Bacteria 71154
169 Ga0316584_0007372 3300036712 Bacteria 7513
170 Ga0316584_0017225 3300036712 Bacteria 5190
171 Ga0316584_0025831 3300036712 Bacteria 4310
172 Ga0316584_0031700 3300036712 Unclassified 3908
173 Ga0316584_0071726 3300036712 Bacteria 2595
174 Ga0316584_0094030 3300036712 Unclassified 2245
175 Ga0316584_0150031 3300036712 Bacteria 1735
176 Ga0316584_0161520 3300036712 Bacteria 1664
177 Ga0316584_0185299 3300036712 Bacteria 1540
178 Ga0316584_0190606 3300036712 Bacteria 1516
179 Ga0316584_0254978 3300036712 Bacteria 1281
180 Ga0316584_0270093 3300036712 Bacteria 1238
181 Ga0316584_0291109 3300036712 Bacteria 1184
182 Ga0316584_0346516 3300036712 Bacteria 1067
183 Ga0316584_0369488 3300036712 Bacteria 1027
184 Ga0316584_0468703 3300036712 Unclassified 888
185 Ga0316584_0874800 3300036712 Unclassified 606
186 Ga0316584_0985910 3300036712 Bacteria 563
187 Ga0316584_1146321 3300036712 Unclassified 514
188 Ga0395900_0022563 3300037418 Bacteria 6441
189 Ga0395900_0531208 3300037418 Bacteria 1123
190 Ga0395898_0088874 3300037466 Unclassified 2974
191 Ga0395898_0211944 3300037466 Unclassified 1848
192 Ga0395898_1249000 3300037466 Bacteria 673
193 Ga0395905_0031135 3300037471 Bacteria 5023
194 Ga0395905_0066593 3300037471 Bacteria 3373
195 Ga0395905_0259495 3300037471 Unclassified 1622
196 Ga0395905_1571858 3300037471 Unclassified 562
197 Ga0316581_0000274 3300037588 Bacteria 9028
198 Ga0316581_0061565 3300037588 Bacteria 1152
199 Ga0316581_0136545 3300037588 Bacteria 756
200 Ga0316581_0279909 3300037588 Bacteria 512
201 Ga0395901_0880402 3300038443 Unclassified 879
202 Ga0400484_06087 3300038725 Bacteria 2213
203 Ga0400484_12791 3300038725 Bacteria 2711
204 Ga0400484_19472 3300038725 Bacteria 15964
205 Ga0400490_01620 3300038726 Bacteria 1057
206 Ga0400490_11749 3300038726 Bacteria 4491
207 Ga0400490_37494 3300038726 Unclassified 1828
208 Ga0400490_47718 3300038726 Bacteria 2961
209 Ga0400490_50443 3300038726 Bacteria 1572
210 Ga0400490_54709 3300038726 Bacteria 4277
211 Ga0400490_56083 3300038726 Bacteria 33747
212 Ga0400491_07926 3300038727 Unclassified 2719
213 Ga0400491_15232 3300038727 Bacteria 3225
214 Ga0400491_23760 3300038727 Unclassified 2870
215 Ga0400485_03540 3300038735 Bacteria 33862
216 Ga0400485_04042 3300038735 Bacteria 23120
217 Ga0400485_18519 3300038735 Bacteria 7239
218 Ga0400488_16211 3300038741 Bacteria 3267
219 Ga0400488_18219 3300038741 Bacteria 1848
220 Ga0400488_44255 3300038741 Bacteria 8982
221 Ga0400488_47881 3300038741 Bacteria 6393
222 Ga0400488_57983 3300038741 Bacteria 1441
223 Ga0400486_04029 3300038742 Bacteria 63930
224 Ga0400486_10095 3300038742 Bacteria 16497
225 Ga0400486_21173 3300038742 Bacteria 13494
226 Ga0400486_27607 3300038742 Bacteria 12528
227 Ga0400483_044852 3300039062 Bacteria 1308
228 Ga0400483_092652 3300039062 Bacteria 12765
229 Ga0400483_094655 3300039062 Unclassified 1575
230 Ga0400483_152403 3300039062 Unclassified 1037
231 Ga0400483_165404 3300039062 Bacteria 24912
232 Ga0400483_171654 3300039062 Bacteria 10287
233 Ga0400483_214772 3300039062 Bacteria 10223
234 Ga0400483_230671 3300039062 Bacteria 1058
235 Ga0400483_243365 3300039062 Bacteria 1739
236 Ga0400489_04096 3300039093 Bacteria 24026
237 Ga0400489_19166 3300039093 Bacteria 10110
238 Ga0400489_35321 3300039093 Bacteria 11783
239 Ga0400489_65002 3300039093 Bacteria 60906
240 Ga0400489_79275 3300039093 Bacteria 18981
241 Ga0400489_82086 3300039093 Bacteria 1935
242 Ga0400487_05661 3300039110 Bacteria 8125
243 Ga0400487_50906 3300039110 Bacteria 1671
244 Ga0400487_56445 3300039110 Bacteria 32953
245 Ga0439460_0000862 3300042461 Bacteria 6941
246 Ga0451577_0006142 3300042876 Bacteria 12062
247 Ga0451577_0059098 3300042876 Bacteria 3419
248 Ga0451577_0068466 3300042876 Bacteria 3165
249 Ga0453683_0538516 3300044673 Unclassified 759
250 Ga0453684_0002178 3300044712 Bacteria 48886
251 Ga0453684_0004329 3300044712 Bacteria 30198
252 Ga0453684_0456906 3300044712 Bacteria 1421
253 Ga0453684_0736663 3300044712 Bacteria 1068
254 Ga0451576_0010929 3300045051 Bacteria 10377
255 Ga0451576_0158809 3300045051 Unclassified 2359
256 Ga0451576_0318037 3300045051 Bacteria 1629
257 Ga0496116_0142187 3300048919 Bacteria 1347
258 nmdc:mga0k408_584766_c1 3300050493 Unclassified 659
259 Ga0500643_002344 3300053087 Bacteria 9895
260 2740994868 2740891818 Bacteria 6711283
261 Ga0068869_101323999
262 Ga0070667_100277565
263 Ga0068859_100884014
264 Ga0068861_101218950
265 Ga0068860_100025733
266 Ga0068860_100360442
267 Ga0075366_10661342
268 Ga0075433_10680924
269 Ga0097620_100883943
270 Ga0105240_12769380
271 Ga0111539_10361260
272 Ga0114129_11687048
273 Ga0157375_13598725
274 Ga0157379_10561338
275 Ga0207641_10598963
276 Ga0268264_10095196
277 Ga0268264_10132859
278 Ga0316575_10000082
279 Ga0316575_10003854
280 Ga0316575_10053023
281 Ga0316575_10097037
282 Ga0316575_10117760
283 Ga0316575_10198292
284 Ga0316575_10216353
285 Ga0316575_10521672
286 Ga0316579_10000245
287 Ga0316579_10006271
288 Ga0316579_10009087
289 Ga0316579_10037205
290 Ga0316579_10069940
291 Ga0316579_10173028
292 Ga0316579_10248478
293 Ga0316579_10318506
294 Ga0316579_10555106
295 Ga0316576_10000549
296 Ga0316576_10000916
297 Ga0316576_10002819
298 Ga0316576_10006569
299 Ga0316576_10046291
300 Ga0316576_10058838
301 Ga0316576_10060307
302 Ga0316576_10068882
303 Ga0316576_10078524
304 Ga0316576_10119233
305 Ga0316576_10127650
306 Ga0316576_10144627
307 Ga0316576_10156042
308 Ga0316576_10161879
309 Ga0316576_10275974
310 Ga0316576_10307868
311 Ga0316576_10657667
312 Ga0316576_11317373
313 Ga0316578_10001317
314 Ga0316578_10001767
315 Ga0316578_10003538
316 Ga0316578_10034643
317 Ga0316578_10039871
318 Ga0316578_10129660
319 Ga0316578_10188025
320 Ga0316578_10247707
321 Ga0316578_10388305
322 Ga0316578_10535026
323 Ga0316578_10636331
324 Ga0316577_10000008
325 Ga0316577_10009563
326 Ga0316577_10010270
327 Ga0316577_10060582
328 Ga0316577_10078120
329 Ga0316577_10080466
330 Ga0316577_10105817
331 Ga0316577_10151867
332 Ga0316577_10187924
333 Ga0316583_10000835
334 Ga0316583_10006482
335 Ga0316583_10010577
336 Ga0316583_10022920
337 Ga0316583_10038197
338 Ga0316583_10085645
339 Ga0316583_10091008
340 Ga0316583_10129178
341 Ga0316583_10169281
342 Ga0316585_10000319
343 Ga0316585_10007618
344 Ga0316585_10013084
345 Ga0316585_10082041
346 Ga0316585_10090280
347 Ga0316585_10107564
348 Ga0316585_10152370
349 Ga0316585_10237386
350 Ga0316580_10000380
351 Ga0316580_10008027
352 Ga0316580_10029531
353 Ga0316580_10294134
354 Ga0316580_10298949
355 Ga0316593_10051730
356 Ga0316593_10053990
357 Ga0316593_10058288
358 Ga0316593_10063920
359 Ga0316593_10075193
360 Ga0316593_10076595
361 Ga0316593_10106601
362 Ga0316593_10203835
363 Ga0316593_10211734
364 Ga0316593_10313484
365 Ga0316593_10425015
366 Ga0316592_1031309
367 Ga0316592_1081067
368 Ga0316592_1127110
369 Ga0316592_1133843
370 Ga0316592_1178195
371 Ga0316586_1081359
372 Ga0316588_1017229
373 Ga0316588_1023206
374 Ga0316588_1042765
375 Ga0316588_1080295
376 Ga0316588_1135827
377 Ga0316588_1181101
378 Ga0316588_1200595
379 Ga0316587_1022262
380 Ga0316587_1042980
381 Ga0316587_1054424
382 Ga0316587_1059133
383 Ga0316587_1071021
384 Ga0316587_1077265
385 Ga0316587_1085940
386 Ga0316596_1017037
387 Ga0316596_1033382
388 Ga0316596_1046581
389 Ga0316596_1074975
390 Ga0316596_1088473
391 Ga0316596_1128559
392 Ga0316596_1130540
393 Ga0316596_1174284
394 Ga0316596_1176894
395 Ga0316596_1229761
396 Ga0316574_0000206
397 Ga0316574_0009767
398 Ga0316574_0018602
399 Ga0316574_0019076
400 Ga0316574_0043021
401 Ga0316574_0080395
402 Ga0316574_0086025
403 Ga0316574_0196829
404 Ga0316574_0249077
405 Ga0316574_0258747
406 Ga0316574_0311575
407 Ga0316574_0492693
408 Ga0316574_0609099
409 Ga0316574_0690470
410 Ga0316582_0000358
411 Ga0316582_0008536
412 Ga0316582_0027784
413 Ga0316582_0050259
414 Ga0316582_0051979
415 Ga0316582_0081575
416 Ga0316582_0086144
417 Ga0316582_0097236
418 Ga0316582_0100352
419 Ga0316582_0194342
420 Ga0316582_0227133
421 Ga0316582_0248254
422 Ga0316582_0382746
423 Ga0316582_0477889
424 Ga0316582_0563406
425 Ga0316582_0596099
426 Ga0316582_0624721
427 Ga0316582_0865604
428 Ga0316584_0000005
429 Ga0316584_0007372
430 Ga0316584_0017225
431 Ga0316584_0025831
432 Ga0316584_0031700
433 Ga0316584_0071726
434 Ga0316584_0094030
435 Ga0316584_0150031
436 Ga0316584_0161520
437 Ga0316584_0185299
438 Ga0316584_0190606
439 Ga0316584_0254978
440 Ga0316584_0270093
441 Ga0316584_0291109
442 Ga0316584_0346516
443 Ga0316584_0369488
444 Ga0316584_0468703
445 Ga0316584_0874800
446 Ga0316584_0985910
447 Ga0316584_1146321
448 Ga0395900_0022563
449 Ga0395900_0531208
450 Ga0395898_0088874
451 Ga0395898_0211944
452 Ga0395898_1249000
453 Ga0395905_0031135
454 Ga0395905_0066593
455 Ga0395905_0259495
456 Ga0395905_1571858
457 Ga0316581_0000274
458 Ga0316581_0061565
459 Ga0316581_0136545
460 Ga0316581_0279909
461 Ga0395901_0880402
462 Ga0400484_06087
463 Ga0400484_12791
464 Ga0400484_19472
465 Ga0400490_01620
466 Ga0400490_11749
467 Ga0400490_37494
468 Ga0400490_47718
469 Ga0400490_50443
470 Ga0400490_54709
471 Ga0400490_56083
472 Ga0400491_07926
473 Ga0400491_15232
474 Ga0400491_23760
475 Ga0400485_03540
476 Ga0400485_04042
477 Ga0400485_18519
478 Ga0400488_16211
479 Ga0400488_18219
480 Ga0400488_44255
481 Ga0400488_47881
482 Ga0400488_57983
483 Ga0400486_04029
484 Ga0400486_10095
485 Ga0400486_21173
486 Ga0400486_27607
487 Ga0400483_044852
488 Ga0400483_092652
489 Ga0400483_094655
490 Ga0400483_152403
491 Ga0400483_165404
492 Ga0400483_171654
493 Ga0400483_214772
494 Ga0400483_230671
495 Ga0400483_243365
496 Ga0400489_04096
497 Ga0400489_19166
498 Ga0400489_35321
499 Ga0400489_65002
500 Ga0400489_79275
501 Ga0400489_82086
502 Ga0400487_05661
503 Ga0400487_50906
504 Ga0400487_56445
505 Ga0439460_0000862
506 Ga0451577_0006142
507 Ga0451577_0059098
508 Ga0451577_0068466
509 Ga0453683_0538516
510 Ga0453684_0002178
511 Ga0453684_0004329
512 Ga0453684_0456906
513 Ga0453684_0736663
514 Ga0451576_0010929
515 Ga0451576_0158809
516 Ga0451576_0318037
517 Ga0496116_0142187
518 nmdc:mga0k408_584766_c1
519 Ga0500643_002344
520 2740994868

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01258

zf-dskA_traR

Prokaryotic dksA/traR C4-type zinc finger

79

114

0.97

PF21157

DksA_N

DnaK suppressor protein DksA, N-terminal domain

5

76

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
6dma-assembly4.cif.gz_G dhd15_closed 0.8664 6 80
4ijj-assembly1.cif.gz_A structure of transcription factor dksa2 from pseudomonas aeruginosa 0.8501 1 117
7khe-assembly1.cif.gz_M escherichia coli rna polymerase and rrnbp1 promoter pre-open complex with dksa/ppgpp 0.8474 1 120
4ijj-assembly3.cif.gz_C structure of transcription factor dksa2 from pseudomonas aeruginosa 0.8321 1 117
7khe-assembly1.cif.gz_M escherichia coli rna polymerase and rrnbp1 promoter pre-open complex with dksa/ppgpp 0.8224 1 120
ID Description Score Start End Superfamily
4ijjA00 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);DksA, coiled-coil domain 0.8501 1 117 1.20.120.910
3fx7B00 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;HP0062-like domain 0.8286 1 80 1.10.287.850
4ijjA00 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);DksA, coiled-coil domain 0.7996 1 117 1.20.120.910
1tjlB00 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);DksA, coiled-coil domain 0.7873 1 120 1.20.120.910
3favA00 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;ESAT-6-like 0.7765 2 79 1.10.287.1060
ID Description Score Start End GO Terms
AF-A0A2E4D797-F1-model_v4 Conjugal transfer protein TraR 0.9647 1 118 GO:0008270
AF-A0A1F9CUY1-F1-model_v4 Uncharacterized protein 0.9542 1 120 GO:0008270
AF-A0A7C1CGI2-F1-model_v4 TraR/DksA family transcriptional regulator 0.9367 1 113 GO:0008270
AF-A0A424HZ84-F1-model_v4 Zinc finger DksA/TraR C4-type domain-containing protein 0.9356 1 109 GO:0008270
AF-A0A2F0ATC7-F1-model_v4 Conjugal transfer protein TraR 0.9338 6 119 GO:0008270

Map