F366450

General Info

Members Datasets Scaffolds Average Seq Length
256 166 512 354

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10374613|Ga0114129_103746132
Length 402
Sequence VLVRVAAGEPAPMVVAGHGRDSDGSPCDAGGGTRLRLGDDAPSVASSAPVARSGEVHVEVGGREVRVTSADRVIFPATESTPAHTKLDVVRYYAAVEDGIMRALCRRPTTLERWPKGVHPGMVLATREDSRGADAFYQKRIPKGAPDYVRTARIEFPSGRTADEICPTEVAVVAWCAQMGTITFHPWPVRGDDVGHPDELRLDLDPQPGTDFGDAVRVAAVARELLGELGYVGFPKTSGGRGVHIYVRIEPRWTFTDVRHAAIAFGRELARRLPGEVTTSWWKEERGERIFVDYNQNARDRTIASAYSIRPKPGAPVSAPLAWDELDRVQPEDFTVATMPARFADVGDPHAAIDDVAHSLQPLLDLYEQQGADDMPYPPDYPKMPGEPKRVQPSRDRDRPRD

Samples

Sample ID Description Type Environment
1 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
2 3300000549 Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJQ_Illumina_Assembled Metagenome Rhizosphere
3 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
6 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
11 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
12 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
15 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
16 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
17 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
18 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
19 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
20 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
21 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
22 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
23 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
24 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
25 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
26 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
27 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
28 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
29 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
30 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
31 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
32 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
33 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
34 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
35 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
36 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
37 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
38 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
39 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
57 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
60 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
61 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
62 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
63 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
64 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
65 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
66 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
67 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
68 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
69 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
70 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
71 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
72 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
73 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
74 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
75 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
76 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
77 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
78 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
79 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
80 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
81 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
82 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
83 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
84 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
85 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
86 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
87 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
88 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
89 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
90 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
91 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
92 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
93 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
94 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
95 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
96 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
97 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
98 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
99 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
100 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
101 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
102 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
103 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
104 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
105 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
106 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
107 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
108 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
109 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
110 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
111 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
112 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
113 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
114 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
115 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
116 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
117 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
118 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
119 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
122 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
123 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
125 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
126 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
127 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
128 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
129 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
130 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
131 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
132 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
133 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
134 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
135 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
136 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
137 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
138 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
139 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
140 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
141 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
142 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
143 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
144 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
145 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
146 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
147 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
148 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
149 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
150 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
151 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
152 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
153 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
154 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
155 3300059424 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 10_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
156 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
157 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
158 2643221561 Nocardioides sp. Root151 Isolate Unclassified
159 2643221696 Nocardioides sp. Root140 Isolate Unclassified
160 2643221697 Aeromicrobium sp. Root495 Isolate Unclassified
161 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
162 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
163 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
164 2855386786 Nocardioides ferulae EGI 63112 Isolate Unclassified
165 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
166 2984592036 Aeromicrobium sp. SORGH_AS981 Isolate Aerial Root

Type Distribution

Type Percentage (%)
Metagenomes 96.48
Metatranscriptomes 0
Isolates 3.52

Biome Distribution

Category Percentage (%)
Aerial Root 0.39
Bulb 0
Endosphere 6.25
Nodule 0
Rhizoplane 4.69
Rhizosphere 78.12
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0114129_10374613 3300009147 Bacteria 1881
2 LJQas_1004719 3300000549 Bacteria 1762
3 Ga0070660_100014764 3300005339 Bacteria 5635
4 Ga0070668_100008080 3300005347 Bacteria 7814
5 Ga0070674_100227197 3300005356 Bacteria 1455
6 Ga0070659_100000008 3300005366 Bacteria 204009
7 Ga0070714_100019534 3300005435 Bacteria 5522
8 Ga0070713_100126032 3300005436 Bacteria 2252
9 Ga0070700_100020912 3300005441 Bacteria 3799
10 Ga0070662_100004020 3300005457 Bacteria 9226
11 Ga0070695_100032891 3300005545 Bacteria 3243
12 Ga0070696_100037080 3300005546 Bacteria 3363
13 Ga0070665_100443281 3300005548 Bacteria 1308
14 Ga0068861_100013923 3300005719 Bacteria 5638
15 Ga0068863_100006491 3300005841 Bacteria 11470
16 Ga0068858_100000265 3300005842 Bacteria 55957
17 Ga0068860_100210608 3300005843 Bacteria 1886
18 Ga0068862_100010144 3300005844 Bacteria 7773
19 Ga0081455_10020344 3300005937 Bacteria 6254
20 Ga0081538_10000696 3300005981 Bacteria 36915
21 Ga0081538_10000953 3300005981 Bacteria 31063
22 Ga0081538_10003080 3300005981 Bacteria 15857
23 Ga0081538_10006150 3300005981 Bacteria 10646
24 Ga0081538_10015118 3300005981 Bacteria 5996
25 Ga0081538_10051718 3300005981 Bacteria 2463
26 Ga0081538_10055632 3300005981 Bacteria 2327
27 Ga0081539_10001489 3300005985 Bacteria 39599
28 Ga0081539_10008080 3300005985 Bacteria 9310
29 Ga0070717_10000017 3300006028 Bacteria 205340
30 Ga0075365_10025446 3300006038 Bacteria 3747
31 Ga0075365_10036716 3300006038 Bacteria 3176
32 Ga0075365_10154527 3300006038 Bacteria 1597
33 Ga0075363_100023072 3300006048 Bacteria 3150
34 Ga0075363_100025597 3300006048 Bacteria 3011
35 Ga0075363_100063558 3300006048 Bacteria 1993
36 Ga0075364_10004494 3300006051 Bacteria 8036
37 Ga0075367_10074927 3300006178 Bacteria 2040
38 Ga0075428_100015093 3300006844 Bacteria 8579
39 Ga0075428_100301075 3300006844 Bacteria 1724
40 Ga0075430_100032232 3300006846 Bacteria 4449
41 Ga0075431_100002039 3300006847 Bacteria 19298
42 Ga0075431_100017095 3300006847 Bacteria 7370
43 Ga0075433_10030984 3300006852 Bacteria 4567
44 Ga0075434_100025535 3300006871 Bacteria 5780
45 Ga0075434_100097667 3300006871 Bacteria 2942
46 Ga0111539_10000330 3300009094 Bacteria 57989
47 Ga0111539_10015495 3300009094 Bacteria 9477
48 Ga0111539_10018365 3300009094 Bacteria 8662
49 Ga0111539_10332441 3300009094 Bacteria 1769
50 Ga0105245_10012475 3300009098 Bacteria 7394
51 Ga0114129_10037287 3300009147 Bacteria 6864
52 Ga0114129_10049372 3300009147 Bacteria 5912
53 Ga0114129_10058203 3300009147 Bacteria 5406
54 Ga0114129_10091153 3300009147 Bacteria 4224
55 Ga0114129_10475883 3300009147 Bacteria 1635
56 Ga0105249_10018733 3300009553 Bacteria 6165
57 Ga0163162_10217260 3300013306 Bacteria 2042
58 Ga0163163_10369528 3300014325 Bacteria 1491
59 Ga0157379_10002308 3300014968 Bacteria 15895
60 Ga0157379_10002967 3300014968 Bacteria 14312
61 Ga0213876_10033438 3300021384 Bacteria 2712
62 Ga0207692_10000004 3300025898 Bacteria 413600
63 Ga0207710_10000019 3300025900 Bacteria 339682
64 Ga0207688_10057478 3300025901 Bacteria 2187
65 Ga0207688_10137170 3300025901 Bacteria 1437
66 Ga0207693_10070779 3300025915 Bacteria 2729
67 Ga0207687_10109424 3300025927 Bacteria 2047
68 Ga0207700_10120124 3300025928 Bacteria 2130
69 Ga0207664_10189493 3300025929 Bacteria 1770
70 Ga0207690_10000078 3300025932 Bacteria 84537
71 Ga0207706_10009789 3300025933 Bacteria 8796
72 Ga0207669_10210044 3300025937 Bacteria 1420
73 Ga0207712_10007415 3300025961 Bacteria 6927
74 Ga0207712_10037456 3300025961 Bacteria 3309
75 Ga0207668_10100228 3300025972 Bacteria 2150
76 Ga0207640_10080149 3300025981 Bacteria 2228
77 Ga0207703_10000013 3300026035 Bacteria 305126
78 Ga0207708_10030236 3300026075 Bacteria 4107
79 Ga0207708_10111349 3300026075 Bacteria 2125
80 Ga0207641_10003944 3300026088 Bacteria 12963
81 Ga0207675_100004577 3300026118 Bacteria 13336
82 Ga0207428_10050671 3300027907 Bacteria 3321
83 Ga0207428_10075807 3300027907 Bacteria 2635
84 Ga0268265_10071015 3300028380 Bacteria 2710
85 Ga0268264_10360095 3300028381 Bacteria 1387
86 Ga0316578_10241941 3300031728 Bacteria 1083
87 Ga0307405_10141939 3300031731 Bacteria 1676
88 Ga0307409_100024863 3300031995 Bacteria 4188
89 Ga0307409_100070337 3300031995 Bacteria 2777
90 Ga0307409_100109671 3300031995 Bacteria 2311
91 Ga0307409_100120482 3300031995 Bacteria 2221
92 Ga0307416_100058436 3300032002 Bacteria 3127
93 Ga0307416_100119516 3300032002 Bacteria 2344
94 Ga0307414_10153052 3300032004 Bacteria 1822
95 Ga0307415_100170999 3300032126 Bacteria 1694
96 Ga0307415_100251494 3300032126 Bacteria 1436
97 Ga0316574_0011912 3300035398 Bacteria 4958
98 Ga0373931_0005832 3300035691 Bacteria 5730
99 Ga0316584_0131246 3300036712 Bacteria 1871
100 Ga0395898_0125178 3300037466 Bacteria 2462
101 Ga0436364_0774364 3300037853 Bacteria 11982
102 Ga0436364_1192189 3300037853 Bacteria 33424
103 Ga0395901_0012347 3300038443 Bacteria 8665
104 Ga0395901_0095715 3300038443 Bacteria 3111
105 Ga0395901_0192829 3300038443 Bacteria 2137
106 Ga0436365_0043334 3300039437 Bacteria 3908
107 Ga0436365_1266349 3300039437 Bacteria 2894
108 Ga0436365_1677651 3300039437 Bacteria 28588
109 Ga0436362_0334159 3300039453 Bacteria 4797
110 Ga0436362_0917977 3300039453 Bacteria 1643
111 Ga0439463_014276 3300042016 Bacteria 1957
112 Ga0466969_0020446 3300044656 Bacteria 3428
113 Ga0466972_0015405 3300044658 Bacteria 3822
114 Ga0466965_0035057 3300044683 Bacteria 2457
115 Ga0466966_0024328 3300044684 Bacteria 3962
116 Ga0466966_0227122 3300044684 Bacteria 1127
117 Ga0466961_0002572 3300044693 Bacteria 11247
118 Ga0466961_0135384 3300044693 Bacteria 1543
119 Ga0466963_0003228 3300044694 Bacteria 9285
120 Ga0466963_0003508 3300044694 Bacteria 9000
121 Ga0466963_0035956 3300044694 Bacteria 3228
122 Ga0466963_0041201 3300044694 Bacteria 3028
123 Ga0466963_0062248 3300044694 Bacteria 2496
124 Ga0466971_0009783 3300044719 Bacteria 4184
125 Ga0466968_0020224 3300044735 Bacteria 2685
126 Ga0466968_0059132 3300044735 Bacteria 1650
127 Ga0466970_0035251 3300044765 Bacteria 2651
128 Ga0466957_0009976 3300044842 Bacteria 5435
129 Ga0466960_0024264 3300044901 Bacteria 2734
130 Ga0466959_0003407 3300045049 Bacteria 10398
131 Ga0466959_0015363 3300045049 Bacteria 5576
132 Ga0466959_0023324 3300045049 Bacteria 4579
133 Ga0466959_0094644 3300045049 Bacteria 2143
134 Ga0466958_0000570 3300045836 Bacteria 15724
135 Ga0466958_0002616 3300045836 Bacteria 9099
136 Ga0466958_0122870 3300045836 Bacteria 1626
137 Ga0466958_0144676 3300045836 Bacteria 1498
138 Ga0466967_0005833 3300045976 Bacteria 8616
139 Ga0466967_0007329 3300045976 Bacteria 7944
140 Ga0466967_0128431 3300045976 Bacteria 2350
141 Ga0466967_0135467 3300045976 Bacteria 2290
142 Ga0466967_0246291 3300045976 Bacteria 1706
143 Ga0495653_0024198 3300046463 Bacteria 4897
144 Ga0495650_0000301 3300046471 Bacteria 89841
145 Ga0495584_0080710 3300046491 Bacteria 1637
146 Ga0495634_0113275 3300046642 Bacteria 1742
147 Ga0495613_0104544 3300046689 Bacteria 2044
148 Ga0495624_0098648 3300046690 Bacteria 1799
149 Ga0495604_0227243 3300047317 Bacteria 1282
150 Ga0495674_0015317 3300047319 Bacteria 7173
151 Ga0495672_0037285 3300047320 Bacteria 2976
152 Ga0495680_0163916 3300047322 Bacteria 1612
153 Ga0495684_0224639 3300047471 Bacteria 1375
154 Ga0495602_0042453 3300048088 Bacteria 4143
155 Ga0496102_0400694 3300048905 Bacteria 1290
156 Ga0496103_0024635 3300048906 Bacteria 3632
157 Ga0496104_0057340 3300048907 Bacteria 3685
158 Ga0496104_0305507 3300048907 Bacteria 1503
159 Ga0496105_0003241 3300048908 Bacteria 11996
160 Ga0496109_0053705 3300048912 Bacteria 3675
161 Ga0496111_0019870 3300048914 Bacteria 4671
162 Ga0496111_0130957 3300048914 Bacteria 1856
163 Ga0496112_0079565 3300048915 Bacteria 3242
164 Ga0496112_0136931 3300048915 Bacteria 2418
165 Ga0496112_0307617 3300048915 Bacteria 1530
166 Ga0496113_0062371 3300048916 Bacteria 2815
167 Ga0496116_0000014 3300048919 Bacteria 569049
168 Ga0496117_0001366 3300048920 Bacteria 35586
169 Ga0496118_0000090 3300048921 Bacteria 175645
170 Ga0496118_0048282 3300048921 Bacteria 3290
171 Ga0496118_0060968 3300048921 Bacteria 2797
172 Ga0496119_0004082 3300048922 Bacteria 14717
173 Ga0496119_0023982 3300048922 Bacteria 4307
174 Ga0496119_0036349 3300048922 Bacteria 3216
175 Ga0496120_0005065 3300048923 Bacteria 10672
176 Ga0496121_0007419 3300048924 Bacteria 13249
177 Ga0496124_0141474 3300048927 Bacteria 1898
178 Ga0496125_0074449 3300048928 Bacteria 2633
179 Ga0496126_0033070 3300048929 Bacteria 4867
180 Ga0501031_0043326 3300049568 Bacteria 2937
181 Ga0501033_0001125 3300049570 Bacteria 24222
182 Ga0501034_0007309 3300049571 Bacteria 11771
183 Ga0501036_0000486 3300049572 Bacteria 28397
184 Ga0501036_0180364 3300049572 Bacteria 1778
185 Ga0501037_0006239 3300049573 Bacteria 8719
186 Ga0501038_0003441 3300049574 Bacteria 14762
187 Ga0501038_0149382 3300049574 Bacteria 1906
188 Ga0501040_0103213 3300049576 Bacteria 1990
189 Ga0501040_0196264 3300049576 Bacteria 1433
190 Ga0501042_0029181 3300049578 Bacteria 3890
191 Ga0501042_0198193 3300049578 Bacteria 1448
192 Ga0501043_0110858 3300049579 Bacteria 2154
193 Ga0501043_0274138 3300049579 Bacteria 1294
194 Ga0501047_0016832 3300049581 Bacteria 6985
195 Ga0501047_0017627 3300049581 Bacteria 6843
196 Ga0501067_0013243 3300049583 Bacteria 4566
197 Ga0501067_0101698 3300049583 Bacteria 1597
198 Ga0501071_0188091 3300049587 Bacteria 1548
199 Ga0501072_0241000 3300049588 Bacteria 1440
200 Ga0501073_0031623 3300049589 Bacteria 3776
201 Ga0501075_0128345 3300049591 Bacteria 1931
202 Ga0501076_0120016 3300049592 Bacteria 2129
203 Ga0501077_0188861 3300049593 Bacteria 1309
204 Ga0501080_0254687 3300049742 Bacteria 1600
205 Ga0501081_0133866 3300049743 Bacteria 1773
206 Ga0501081_0275507 3300049743 Bacteria 1231
207 Ga0501083_0022556 3300049744 Bacteria 4368
208 Ga0501035_0000769 3300049822 Bacteria 34454
209 Ga0501044_0008295 3300049823 Bacteria 11389
210 nmdc:mga00v17_4023_c1 3300050491 Bacteria 7594
211 nmdc:mga0yw44_200246_c1 3300050492 Bacteria 1319
212 nmdc:mga0yw44_20693_c1 3300050492 Bacteria 3657
213 nmdc:mga0yw44_213978_c1 3300050492 Bacteria 1275
214 nmdc:mga0yw44_253093_c1 3300050492 Bacteria 1173
215 nmdc:mga05p37_100537_c1 3300050507 Bacteria 3562
216 nmdc:mga05p37_26277_c1 3300050507 Bacteria 7080
217 nmdc:mga05p37_270639_c1 3300050507 Bacteria 2030
218 nmdc:mga05p37_54520_c1 3300050507 Bacteria 4919
219 nmdc:mga05p37_74233_c1 3300050507 Bacteria 4186
220 nmdc:mga09592_50906_c1 3300050508 Bacteria 3493
221 nmdc:mga09592_76277_c1 3300050508 Bacteria 2851
222 nmdc:mga0qj67_10811_c1 3300050509 Bacteria 6827
223 nmdc:mga06r32_20351_c1 3300050510 Bacteria 6109
224 nmdc:mga06r32_313005_c1 3300050510 Bacteria 1556
225 nmdc:mga08y16_191910_c1 3300050511 Bacteria 2119
226 nmdc:mga08y16_21095_c1 3300050511 Bacteria 6878
227 nmdc:mga08y16_31377_c1 3300050511 Bacteria 5588
228 nmdc:mga08y16_81293_c1 3300050511 Bacteria 3378
229 nmdc:mga0n895_17025_c1 3300050512 Bacteria 6689
230 nmdc:mga0n895_28832_c1 3300050512 Bacteria 5286
231 nmdc:mga0n895_63978_c1 3300050512 Bacteria 3638
232 nmdc:mga0rr50_130157_c1 3300050513 Bacteria 2014
233 nmdc:mga0rr50_180727_c1 3300050513 Bacteria 1724
234 nmdc:mga08x19_36800_c1 3300050514 Bacteria 3101
235 nmdc:mga0a205_166420_c1 3300050515 Bacteria 2100
236 nmdc:mga0a205_56018_c1 3300050515 Bacteria 3807
237 Ga0495612_0000067 3300053078 Bacteria 47307
238 Ga0500568_0062223 3300053139 Bacteria 1442
239 Ga0500573_0121481 3300053140 Bacteria 1454
240 Ga0500616_0058409 3300053153 Bacteria 2006
241 Ga0501084_0298753 3300054114 Bacteria 1360
242 Ga0590075_018221 3300059424 Bacteria 1736
243 Ga0501082_0226870 3300060353 Bacteria 1626
244 Ga0501082_0274180 3300060353 Bacteria 1468
245 Ga0530510_0081234 3300061734 Bacteria 2360
246 Ga0530510_0126858 3300061734 Bacteria 1876
247 Ga0530510_0186406 3300061734 Bacteria 1539
248 2643827704 2643221561 Bacteria 4984412
249 2644534957 2643221696 Bacteria 5431823
250 2644537664 2643221697 Bacteria 3575694
251 2774396480 2773857762 Bacteria 5971770
252 2809198137 2808606439 Bacteria 5952208
253 2812353175 2811994878 Bacteria 5992952
254 2855389521 2855386786 Bacteria 4752232
255 2891969201 2891968417 Bacteria 5821697
256 2984594713 2984592036 Bacteria 3670284
257 Ga0114129_10374613
258 LJQas_1004719
259 Ga0070660_100014764
260 Ga0070668_100008080
261 Ga0070674_100227197
262 Ga0070659_100000008
263 Ga0070714_100019534
264 Ga0070713_100126032
265 Ga0070700_100020912
266 Ga0070662_100004020
267 Ga0070695_100032891
268 Ga0070696_100037080
269 Ga0070665_100443281
270 Ga0068861_100013923
271 Ga0068863_100006491
272 Ga0068858_100000265
273 Ga0068860_100210608
274 Ga0068862_100010144
275 Ga0081455_10020344
276 Ga0081538_10000696
277 Ga0081538_10000953
278 Ga0081538_10003080
279 Ga0081538_10006150
280 Ga0081538_10015118
281 Ga0081538_10051718
282 Ga0081538_10055632
283 Ga0081539_10001489
284 Ga0081539_10008080
285 Ga0070717_10000017
286 Ga0075365_10025446
287 Ga0075365_10036716
288 Ga0075365_10154527
289 Ga0075363_100023072
290 Ga0075363_100025597
291 Ga0075363_100063558
292 Ga0075364_10004494
293 Ga0075367_10074927
294 Ga0075428_100015093
295 Ga0075428_100301075
296 Ga0075430_100032232
297 Ga0075431_100002039
298 Ga0075431_100017095
299 Ga0075433_10030984
300 Ga0075434_100025535
301 Ga0075434_100097667
302 Ga0111539_10000330
303 Ga0111539_10015495
304 Ga0111539_10018365
305 Ga0111539_10332441
306 Ga0105245_10012475
307 Ga0114129_10037287
308 Ga0114129_10049372
309 Ga0114129_10058203
310 Ga0114129_10091153
311 Ga0114129_10475883
312 Ga0105249_10018733
313 Ga0163162_10217260
314 Ga0163163_10369528
315 Ga0157379_10002308
316 Ga0157379_10002967
317 Ga0213876_10033438
318 Ga0207692_10000004
319 Ga0207710_10000019
320 Ga0207688_10057478
321 Ga0207688_10137170
322 Ga0207693_10070779
323 Ga0207687_10109424
324 Ga0207700_10120124
325 Ga0207664_10189493
326 Ga0207690_10000078
327 Ga0207706_10009789
328 Ga0207669_10210044
329 Ga0207712_10007415
330 Ga0207712_10037456
331 Ga0207668_10100228
332 Ga0207640_10080149
333 Ga0207703_10000013
334 Ga0207708_10030236
335 Ga0207708_10111349
336 Ga0207641_10003944
337 Ga0207675_100004577
338 Ga0207428_10050671
339 Ga0207428_10075807
340 Ga0268265_10071015
341 Ga0268264_10360095
342 Ga0316578_10241941
343 Ga0307405_10141939
344 Ga0307409_100024863
345 Ga0307409_100070337
346 Ga0307409_100109671
347 Ga0307409_100120482
348 Ga0307416_100058436
349 Ga0307416_100119516
350 Ga0307414_10153052
351 Ga0307415_100170999
352 Ga0307415_100251494
353 Ga0316574_0011912
354 Ga0373931_0005832
355 Ga0316584_0131246
356 Ga0395898_0125178
357 Ga0436364_0774364
358 Ga0436364_1192189
359 Ga0395901_0012347
360 Ga0395901_0095715
361 Ga0395901_0192829
362 Ga0436365_0043334
363 Ga0436365_1266349
364 Ga0436365_1677651
365 Ga0436362_0334159
366 Ga0436362_0917977
367 Ga0439463_014276
368 Ga0466969_0020446
369 Ga0466972_0015405
370 Ga0466965_0035057
371 Ga0466966_0024328
372 Ga0466966_0227122
373 Ga0466961_0002572
374 Ga0466961_0135384
375 Ga0466963_0003228
376 Ga0466963_0003508
377 Ga0466963_0035956
378 Ga0466963_0041201
379 Ga0466963_0062248
380 Ga0466971_0009783
381 Ga0466968_0020224
382 Ga0466968_0059132
383 Ga0466970_0035251
384 Ga0466957_0009976
385 Ga0466960_0024264
386 Ga0466959_0003407
387 Ga0466959_0015363
388 Ga0466959_0023324
389 Ga0466959_0094644
390 Ga0466958_0000570
391 Ga0466958_0002616
392 Ga0466958_0122870
393 Ga0466958_0144676
394 Ga0466967_0005833
395 Ga0466967_0007329
396 Ga0466967_0128431
397 Ga0466967_0135467
398 Ga0466967_0246291
399 Ga0495653_0024198
400 Ga0495650_0000301
401 Ga0495584_0080710
402 Ga0495634_0113275
403 Ga0495613_0104544
404 Ga0495624_0098648
405 Ga0495604_0227243
406 Ga0495674_0015317
407 Ga0495672_0037285
408 Ga0495680_0163916
409 Ga0495684_0224639
410 Ga0495602_0042453
411 Ga0496102_0400694
412 Ga0496103_0024635
413 Ga0496104_0057340
414 Ga0496104_0305507
415 Ga0496105_0003241
416 Ga0496109_0053705
417 Ga0496111_0019870
418 Ga0496111_0130957
419 Ga0496112_0079565
420 Ga0496112_0136931
421 Ga0496112_0307617
422 Ga0496113_0062371
423 Ga0496116_0000014
424 Ga0496117_0001366
425 Ga0496118_0000090
426 Ga0496118_0048282
427 Ga0496118_0060968
428 Ga0496119_0004082
429 Ga0496119_0023982
430 Ga0496119_0036349
431 Ga0496120_0005065
432 Ga0496121_0007419
433 Ga0496124_0141474
434 Ga0496125_0074449
435 Ga0496126_0033070
436 Ga0501031_0043326
437 Ga0501033_0001125
438 Ga0501034_0007309
439 Ga0501036_0000486
440 Ga0501036_0180364
441 Ga0501037_0006239
442 Ga0501038_0003441
443 Ga0501038_0149382
444 Ga0501040_0103213
445 Ga0501040_0196264
446 Ga0501042_0029181
447 Ga0501042_0198193
448 Ga0501043_0110858
449 Ga0501043_0274138
450 Ga0501047_0016832
451 Ga0501047_0017627
452 Ga0501067_0013243
453 Ga0501067_0101698
454 Ga0501071_0188091
455 Ga0501072_0241000
456 Ga0501073_0031623
457 Ga0501075_0128345
458 Ga0501076_0120016
459 Ga0501077_0188861
460 Ga0501080_0254687
461 Ga0501081_0133866
462 Ga0501081_0275507
463 Ga0501083_0022556
464 Ga0501035_0000769
465 Ga0501044_0008295
466 nmdc:mga00v17_4023_c1
467 nmdc:mga0yw44_200246_c1
468 nmdc:mga0yw44_20693_c1
469 nmdc:mga0yw44_213978_c1
470 nmdc:mga0yw44_253093_c1
471 nmdc:mga05p37_100537_c1
472 nmdc:mga05p37_26277_c1
473 nmdc:mga05p37_270639_c1
474 nmdc:mga05p37_54520_c1
475 nmdc:mga05p37_74233_c1
476 nmdc:mga09592_50906_c1
477 nmdc:mga09592_76277_c1
478 nmdc:mga0qj67_10811_c1
479 nmdc:mga06r32_20351_c1
480 nmdc:mga06r32_313005_c1
481 nmdc:mga08y16_191910_c1
482 nmdc:mga08y16_21095_c1
483 nmdc:mga08y16_31377_c1
484 nmdc:mga08y16_81293_c1
485 nmdc:mga0n895_17025_c1
486 nmdc:mga0n895_28832_c1
487 nmdc:mga0n895_63978_c1
488 nmdc:mga0rr50_130157_c1
489 nmdc:mga0rr50_180727_c1
490 nmdc:mga08x19_36800_c1
491 nmdc:mga0a205_166420_c1
492 nmdc:mga0a205_56018_c1
493 Ga0495612_0000067
494 Ga0500568_0062223
495 Ga0500573_0121481
496 Ga0500616_0058409
497 Ga0501084_0298753
498 Ga0590075_018221
499 Ga0501082_0226870
500 Ga0501082_0274180
501 Ga0530510_0081234
502 Ga0530510_0126858
503 Ga0530510_0186406
504 2643827704
505 2644534957
506 2644537664
507 2774396480
508 2809198137
509 2812353175
510 2855389521
511 2891969201
512 2984594713

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF21686

LigD_Prim-Pol

LigD, primase-polymerase domain

85

350

0.98

PF01896

DNA_primase_S

DNA primase small subunit

202

323

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
5dmu-assembly1.cif.gz_A structure of the nhej polymerase from methanocella paludicola 0.9392 1 309
5dmu-assembly1.cif.gz_A structure of the nhej polymerase from methanocella paludicola 0.9122 1 309
6sa1-assembly1.cif.gz_A post catalytic complex of prim-polc from mycobacterium smegmatis with gapped dna and 3'-dutp 0.9115 4 340
6sa1-assembly1.cif.gz_A post catalytic complex of prim-polc from mycobacterium smegmatis with gapped dna and 3'-dutp 0.9088 4 340
2far-assembly2.cif.gz_B crystal structure of pseudomonas aeruginosa ligd polymerase domain with datp and manganese 0.8805 16 315
ID Description Score Start End Superfamily
af_P95226_24_305_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9811 23 316 3.90.920.10
af_P95226_24_305_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9743 23 316 3.90.920.10
af_O69697_22_304_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.9697 23 316 3.90.920.10
af_O69697_22_304_3.90.920.10 Alpha Beta;Alpha-Beta Complex;DNA primase, PRIM domain;DNA primase, PRIM domain 0.963 23 316 3.90.920.10
2iruB02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9131 148 281 3.30.70.3300
ID Description Score Start End GO Terms
AF-A0A6J4SUW0-F1-model_v4 ATP-dependent DNA ligase (EC 6.5.1.1) 0.9996 4 306 GO:0003910
AF-A0A7V9E9R2-F1-model_v4 ATP-dependent DNA ligase 0.9898 3 178 GO:0016874
AF-A0A6J4SUW0-F1-model_v4 ATP-dependent DNA ligase (EC 6.5.1.1) 0.9898 4 306 GO:0003910
AF-X7ZZX9-F1-model_v4 deleted 0.9893 138 281
AF-A0A537A1M3-F1-model_v4 DNA primase 0.9885 86 265

Map