F365722

General Info

Members Datasets Scaffolds Average Seq Length
255 194 224 554

Family's Representative Sequence

Representative Sequence 3300020080|Ga0206350_10272446|Ga0206350_102724461
Length 643
Sequence MPMLKDPSKKYKPYKPLNLPNRTWPDKQITSAPRWLATVLRDGNQSLPDPMDGEQKYRFFKKLVELGYKEIEVSFPSASQIDFDFTRRLVEEPGLTPDDVWLQVLAPCREDLIRRTVDSLKGAKKAILHIYLATSPCFRQIVFNMDKKASLEKAVACTKYARSITKDDPSTAGTEWQFEFSPETFSDTEPEFAVEVCEAVKAAWEPTAEHPIIFNLPATVEMSTPNVYADQIEYFCTTMTEREKFVVSLHPHNDRGCAIAAAELAQMAGAQRVEGTLFGNGERTGNVDLVTLALNLYTQGVSPNVDFSDIPSVIKLVEECNKIPVNERWPYGGALVTSAFSGSHQDAVKKGFALREKAGATDDDEWVMPYLPLDPKDIGRNYEAVIRVNSQSGKGGAAWIILRTLELDLPRGLQIEFSKVVQRETERVSRELRPSELVTLFEEAYHLKSNPRFNLIDYNITTDRSQSPAPPEPGKALNTKNLKRRFTGVIEIDSVQHAITGTGNGAISALAAALSTLGIDLDVVDYKEHSISQSNEGGLGREVKAATYIQCTAAGSKNQVWGVGIHGDVVQASLIALLSAASSFLTSRAGSPAPFRPIRSNTLTDEDLQALEQLTGSPETAVANGGLSAKVNIDGLTRQAELL

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2506520007 Serratia plymuthica AS9 Isolate Rhizosphere
3 2506520008 Serratia plymuthica AS12 Isolate Unclassified
4 2508501071 Serratia proteamaculans S4 Isolate Rhizosphere
5 2513237150 Cupriavidus taiwanensis STM6018 Isolate Nodule
6 2513237165 Cupriavidus neocaledonicus STM6070 Isolate Nodule
7 2547132181 Kosakonia sacchari SP1 Isolate Stem
8 2561511199 Enterobacter sp. R4-368 Isolate Nodule
9 2654587920 Serratia plymuthica HRO-C48 Isolate Rhizosphere
10 2671180115 Cedecea sp. NFIX57 Isolate Rhizoplane
11 2687453601 Serratia plymuthica 3Rp8 Isolate Unclassified
12 2772190666 Serratia surfactantfaciens YD25 Isolate Unclassified
13 2791355010 Kosakonia pseudosacchari NN143 Isolate Unclassified
14 2806310673 Serratia quinivorans NCTC 13189 Isolate Rhizosphere
15 2858466076 Pectobacterium polaris SS28 Isolate Stem Tuber
16 2869551831 Serratia inhibens PRI-2C Isolate Rhizosphere
17 2871272651 Pectobacterium carotovorum SS96 Isolate Stem Tuber
18 2888366609 Serratia sp. NGAS9 Isolate Rhizosphere
19 2901300506 Cupriavidus sp. UYMSc13B Isolate Unclassified
20 2904504865 Serratia marcescens 1822 Isolate Unclassified
21 2908669403 Pantoea coffeiphila 1480 Isolate Rhizosphere
22 2935625433 Kosakonia sp. 1610 Isolate Rhizosphere
23 2937967321 Serratia sp. YC16 Isolate Unclassified
24 2939617950 Kosakonia cowanii 2056 Isolate Rhizosphere
25 2990196909 Pseudomonas mangrovi TC-11 Isolate Unclassified
26 3300002773 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS Metagenome Endosphere
27 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
28 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
29 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
30 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
31 3300003784 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 Metagenome Endosphere
32 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
33 3300005272 Switchgrass rhizosphere microbial communities from Buena Vista Grasslands Wildlife Area, Michigan, USA - BV2.1 v1 Metagenome Rhizosphere
34 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
35 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
36 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
37 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
38 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
39 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
40 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
41 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
42 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
43 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
44 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
45 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
46 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
47 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
48 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
49 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
50 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
51 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
52 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
53 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
54 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
55 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
56 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
57 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
58 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
59 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
60 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
61 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
62 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
63 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
64 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
65 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
66 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
67 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
68 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
69 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
70 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
71 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
72 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
73 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
74 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
75 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
76 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
77 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
78 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
79 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
80 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
96 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
97 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
98 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
99 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
100 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
101 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
102 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
103 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
104 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
105 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
106 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
107 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
108 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
109 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
110 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
111 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
112 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
113 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
114 3300044669 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2E Metagenome Unclassified
115 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
116 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
117 3300046458 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co3_19_46 rhizosphere Metagenome Rhizosphere
118 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
119 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
120 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
121 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
122 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
123 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
124 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
125 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
126 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
127 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
128 3300046523 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 rhizosphere Metagenome Rhizosphere
129 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
130 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
131 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
132 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
133 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
134 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
135 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
136 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
137 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
138 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
139 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
140 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
141 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
142 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
143 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
144 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
145 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
146 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
147 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
148 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
149 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
150 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
151 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
152 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
153 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
154 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
155 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
156 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
157 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
158 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
159 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
160 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
161 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
162 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
163 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
164 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
165 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
166 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
167 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
168 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
169 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
170 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
171 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
172 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
173 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
174 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
175 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
176 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
177 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
178 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
179 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
180 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
181 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
182 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
183 3300053126 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 endosphere Metagenome Endosphere
184 3300053135 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 endosphere Metagenome Endosphere
185 3300053138 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 endosphere Metagenome Endosphere
186 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
187 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
188 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
189 640753048 Serratia proteamaculans 568 Isolate Endosphere
190 644736347 Cupriavidus taiwanensis LMG 19424 Isolate Nodule
191 8003400568 Cupriavidus gilardii USM5 Isolate Rhizosphere
192 8015394850 Serratia sp. PGPR-27 Isolate Rhizosphere
193 8019504834 Atlantibacter hermannii 1903 Isolate Rhizosphere
194 8054849141 Dryocola clanedunensis H11S18 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.84
Metatranscriptomes 0.39
Isolates 11.76

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 13.73
Nodule 5.1
Rhizoplane 1.57
Rhizosphere 65.1
Stem 0.39
Stem Tuber 0.78
Unclassified 13.33

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1785375 2162886007 Eukaryota 28356
2 SwRhRL2b_contig_580025 2162886007 Eukaryota 143402
3 JGI25152J39213_1001916 3300002773 Bacteria 8311
4 JGI25151J46595_10000412 3300003187 Bacteria 43739
5 Ga0055526_1001224 3300003771 Bacteria 18465
6 Ga0055526_1005080 3300003771 Bacteria 7680
7 Ga0055526_1016237 3300003771 Bacteria 2928
8 Ga0055524_1000690 3300003775 Bacteria 23658
9 Ga0055536_1002014 3300003781 Bacteria 11655
10 Ga0055534_1002195 3300003784 Bacteria 6951
11 Ga0055534_1003824 3300003784 Bacteria 4601
12 Ga0058692_1000066 3300003856 Bacteria 89302
13 Ga0058692_1001968 3300003856 Bacteria 7154
14 Ga0065703_1020157 3300005272 Bacteria 2018
15 Ga0065704_10000185 3300005289 Eukaryota 919064
16 Ga0065704_10001698 3300005289 Bacteria 11583
17 Ga0065704_10070163 3300005289 Eukaryota 181252
18 Ga0065704_10085501 3300005289 Bacteria 3215
19 Ga0065707_10000476 3300005295 Eukaryota 55000
20 Ga0065707_10082305 3300005295 Eukaryota 17089
21 Ga0070683_100043208 3300005329 Bacteria 4154
22 Ga0070689_100000028 3300005340 Bacteria 98346
23 Ga0070687_100021805 3300005343 Bacteria 3018
24 Ga0070669_100091139 3300005353 Bacteria 2286
25 Ga0070674_100019606 3300005356 Bacteria 4300
26 Ga0070659_100107115 3300005366 Bacteria 2254
27 Ga0068867_100039978 3300005459 Bacteria 3420
28 Ga0068853_100000924 3300005539 Bacteria 20539
29 Ga0068855_100056962 3300005563 Bacteria 4582
30 Ga0068857_100076569 3300005577 Bacteria 2984
31 Ga0068859_100010177 3300005617 Bacteria 9470
32 Ga0068866_10004881 3300005718 Bacteria 5507
33 Ga0075364_10077361 3300006051 Bacteria 2196
34 Ga0097620_100010177 3300006931 Bacteria 9470
35 Ga0079104_1001057 3300006946 Bacteria 20870
36 Ga0079104_1001785 3300006946 Bacteria 13429
37 Ga0079104_1004187 3300006946 Bacteria 6280
38 Ga0079104_1005925 3300006946 Bacteria 4750
39 Ga0099826_10000065 3300006948 Bacteria 60649
40 Ga0105251_10000732 3300009011 Bacteria 30097
41 Ga0105251_10002386 3300009011 Bacteria 14857
42 Ga0105244_10001226 3300009036 Bacteria 21039
43 Ga0105244_10002673 3300009036 Bacteria 13334
44 Ga0105250_10000003 3300009092 Bacteria 547770
45 Ga0105250_10000978 3300009092 Bacteria 16638
46 Ga0105250_10003404 3300009092 Bacteria 7540
47 Ga0105245_10075031 3300009098 Bacteria 3078
48 Ga0105247_10000061 3300009101 Bacteria 126920
49 Ga0105243_10157143 3300009148 Bacteria 1956
50 Ga0105241_10000005 3300009174 Bacteria 384203
51 Ga0105237_10098688 3300009545 Eukaryota 2912
52 Ga0105238_10000241 3300009551 Bacteria 61118
53 Ga0105239_10000638 3300010375 Eukaryota 49815
54 Ga0157373_10058113 3300013100 Bacteria 2743
55 Ga0157371_10003080 3300013102 Bacteria 15467
56 Ga0157370_10003716 3300013104 Bacteria 17831
57 Ga0157369_10002468 3300013105 Bacteria 22167
58 Ga0157372_10004484 3300013307 Bacteria 14897
59 Ga0157372_10007192 3300013307 Bacteria 11852
60 Ga0157375_10066474 3300013308 Bacteria 3600
61 Ga0157375_10105589 3300013308 Bacteria 2907
62 Ga0182008_10001952 3300014497 Bacteria 13280
63 Ga0163161_10000001 3300017792 Bacteria 2041488
64 Ga0206350_10272446 3300020080 Eukaryota 2181
65 Ga0209129_1000015 3300025258 Bacteria 487967
66 Ga0209565_1000196 3300025263 Bacteria 72238
67 Ga0209673_1022617 3300025273 Bacteria 2164
68 Ga0209675_1000092 3300025291 Bacteria 144839
69 Ga0209675_1000992 3300025291 Bacteria 17933
70 Ga0209676_1000378 3300025292 Bacteria 82127
71 Ga0209025_1000222 3300025294 Bacteria 135688
72 Ga0209025_1001345 3300025294 Bacteria 33163
73 Ga0209025_1022087 3300025294 Bacteria 3393
74 Ga0209564_1000489 3300025295 Bacteria 65860
75 Ga0209564_1000582 3300025295 Bacteria 57908
76 Ga0209564_1000655 3300025295 Bacteria 51734
77 Ga0209256_1000335 3300025299 Bacteria 78765
78 Ga0209256_1000362 3300025299 Bacteria 73517
79 Ga0209051_1015627 3300025303 Bacteria 3481
80 Ga0207696_1000001 3300025711 Bacteria 2579611
81 Ga0207696_1000004 3300025711 Bacteria 671626
82 Ga0207696_1000705 3300025711 Bacteria 22787
83 Ga0207713_1000119 3300025735 Bacteria 123810
84 Ga0207713_1000153 3300025735 Bacteria 103510
85 Ga0207710_10000285 3300025900 Bacteria 40929
86 Ga0207654_10000007 3300025911 Bacteria 384211
87 Ga0207671_10056325 3300025914 Eukaryota 2912
88 Ga0207652_10068964 3300025921 Bacteria 3069
89 Ga0207694_10001927 3300025924 Bacteria 17187
90 Ga0207687_10066096 3300025927 Bacteria 2569
91 Ga0207670_10000541 3300025936 Bacteria 20872
92 Ga0207670_10019651 3300025936 Bacteria 4130
93 Ga0207669_10031834 3300025937 Bacteria 2953
94 Ga0207669_10051202 3300025937 Bacteria 2473
95 Ga0207691_10146377 3300025940 Bacteria 2079
96 Ga0207667_10064046 3300025949 Bacteria 3840
97 Ga0207648_10003763 3300026089 Bacteria 15850
98 Ga0207674_10091026 3300026116 Bacteria 3041
99 Ga0207675_100127046 3300026118 Bacteria 2416
100 Ga0209281_1000027 3300027111 Bacteria 463409
101 Ga0209281_1000048 3300027111 Bacteria 322698
102 Ga0209281_1003159 3300027111 Bacteria 5702
103 Ga0209371_1000026 3300027312 Bacteria 449205
104 Ga0209371_1000183 3300027312 Bacteria 91570
105 Ga0209371_1003072 3300027312 Bacteria 8554
106 Ga0209282_1000057 3300027666 Bacteria 99758
107 Ga0307517_10000297 3300028786 Eukaryota 86070
108 Ga0265338_10004703 3300028800 Bacteria 18282
109 Ga0268256_1000003 3300030500 Bacteria 1289401
110 Ga0268256_1000155 3300030500 Bacteria 91570
111 Ga0268256_1004891 3300030500 Bacteria 5408
112 Ga0307511_10018374 3300030521 Eukaryota 6680
113 Ga0265340_10009671 3300031247 Bacteria 5168
114 Ga0265331_10006507 3300031250 Bacteria 6894
115 Ga0265327_10000068 3300031251 Bacteria 219962
116 Ga0265327_10000145 3300031251 Bacteria 156740
117 Ga0307513_10001383 3300031456 Eukaryota 34925
118 Ga0307509_10000657 3300031507 Eukaryota 58755
119 Ga0307509_10000708 3300031507 Eukaryota 56969
120 Ga0316575_10000512 3300031665 Bacteria 11248
121 Ga0265314_10015754 3300031711 Bacteria 5988
122 Ga0265342_10005949 3300031712 Bacteria 9180
123 Ga0307507_10002232 3300033179 Eukaryota 41388
124 Ga0373933_0005172 3300035724 Bacteria 7120
125 Ga0439438_000005 3300041405 Bacteria 408610
126 Ga0439438_003235 3300041405 Bacteria 6663
127 Ga0439452_000029 3300042010 Bacteria 197977
128 Ga0466981_0000036 3300044669 Bacteria 60421
129 Ga0466963_0018719 3300044694 Bacteria 4335
130 Ga0495627_000126 3300046453 Bacteria 93150
131 Ga0495591_011665 3300046458 Bacteria 3311
132 Ga0495641_0028395 3300046461 Eukaryota 2708
133 Ga0495653_0051038 3300046463 Eukaryota 3178
134 Ga0495650_0000176 3300046471 Bacteria 139443
135 Ga0495605_0007711 3300046474 Bacteria 6100
136 Ga0495596_0000038 3300046500 Bacteria 95273
137 Ga0495607_0009314 3300046501 Bacteria 6654
138 Ga0495606_0009555 3300046507 Bacteria 8189
139 Ga0495610_0000141 3300046512 Bacteria 79877
140 Ga0495616_0004693 3300046513 Bacteria 8570
141 Ga0495616_0009846 3300046513 Bacteria 5566
142 Ga0495620_0004150 3300046515 Eukaryota 8218
143 Ga0495644_0006590 3300046523 Bacteria 4499
144 Ga0495648_0011294 3300046524 Bacteria 6740
145 Ga0495652_0030288 3300046529 Eukaryota 4747
146 Ga0495654_0000168 3300046530 Bacteria 64288
147 Ga0495654_0002400 3300046530 Bacteria 12081
148 Ga0495654_0003937 3300046530 Bacteria 8963
149 Ga0495640_0006843 3300046533 Eukaryota 8984
150 Ga0495609_0002182 3300046538 Bacteria 12301
151 Ga0495597_0002268 3300046542 Bacteria 12499
152 Ga0495625_0003280 3300046660 Bacteria 16345
153 Ga0495635_0017482 3300046663 Eukaryota 5008
154 Ga0495588_0000023 3300046674 Eukaryota 510239
155 Ga0495588_0009651 3300046674 Bacteria 4470
156 Ga0495599_0060152 3300046678 Bacteria 2375
157 Ga0495624_0001098 3300046690 Eukaryota 21392
158 Ga0495671_0000462 3300046692 Bacteria 31814
159 Ga0495649_0004461 3300046694 Bacteria 9145
160 Ga0495589_0000004 3300046794 Bacteria 439891
161 Ga0495589_0016528 3300046794 Bacteria 3792
162 Ga0495660_0000010 3300046810 Bacteria 370769
163 Ga0495672_0000085 3300047320 Bacteria 156067
164 Ga0495672_0013900 3300047320 Bacteria 5535
165 Ga0495679_000090 3300047446 Bacteria 82693
166 Ga0495673_0000086 3300047469 Bacteria 192268
167 Ga0495673_0000393 3300047469 Bacteria 51301
168 Ga0495681_0020450 3300047470 Bacteria 3592
169 Ga0495681_0044960 3300047470 Bacteria 2118
170 Ga0495602_0055079 3300048088 Eukaryota 3505
171 Ga0496102_0104773 3300048905 Bacteria 2631
172 Ga0496103_0008136 3300048906 Bacteria 6226
173 Ga0496110_0111213 3300048913 Bacteria 2462
174 Ga0496116_0000001 3300048919 Bacteria 1501681
175 Ga0496116_0044411 3300048919 Bacteria 3018
176 Ga0496117_0000397 3300048920 Bacteria 74293
177 Ga0496117_0002272 3300048920 Bacteria 24829
178 Ga0496117_0005424 3300048920 Bacteria 13405
179 Ga0496117_0024922 3300048920 Bacteria 4712
180 Ga0496118_0047665 3300048921 Bacteria 3318
181 Ga0496118_0053766 3300048921 Bacteria 3056
182 Ga0496119_0000045 3300048922 Bacteria 191361
183 Ga0496119_0029251 3300048922 Bacteria 3742
184 Ga0496120_0010527 3300048923 Eukaryota 6444
185 Ga0496121_0023038 3300048924 Bacteria 6016
186 Ga0496122_0000170 3300048925 Bacteria 154389
187 Ga0496122_0008004 3300048925 Bacteria 11546
188 Ga0496122_0029899 3300048925 Bacteria 4579
189 Ga0496123_0000058 3300048926 Bacteria 226832
190 Ga0496124_0000361 3300048927 Bacteria 82908
191 Ga0496124_0025400 3300048927 Bacteria 5365
192 Ga0496125_0006432 3300048928 Bacteria 12696
193 Ga0495678_002166 3300049459 Bacteria 13853
194 Ga0495682_0000024 3300049460 Bacteria 153545
195 Ga0501034_0001644 3300049571 Bacteria 28871
196 Ga0501036_0013210 3300049572 Bacteria 6857
197 Ga0501036_0037787 3300049572 Bacteria 4084
198 Ga0501040_0001117 3300049576 Bacteria 16995
199 Ga0501041_0019984 3300049577 Bacteria 4001
200 Ga0501042_0018252 3300049578 Bacteria 4856
201 Ga0501046_0015979 3300049580 Bacteria 6296
202 Ga0501046_0121225 3300049580 Bacteria 1989
203 Ga0501048_0116181 3300049582 Bacteria 1890
204 Ga0501072_0014707 3300049588 Bacteria 6000
205 Ga0501072_0028714 3300049588 Bacteria 4342
206 Ga0501074_0011732 3300049590 Bacteria 6370
207 Ga0501075_0002447 3300049591 Bacteria 12369
208 Ga0501075_0146083 3300049591 Bacteria 1802
209 Ga0501076_0002150 3300049592 Bacteria 13521
210 Ga0501077_0057564 3300049593 Bacteria 2468
211 Ga0501079_0003860 3300049741 Bacteria 11059
212 Ga0501080_0007029 3300049742 Bacteria 10162
213 Ga0501081_0045540 3300049743 Bacteria 3012
214 Ga0501045_0005329 3300049824 Bacteria 8907
215 Ga0500578_0002053 3300053086 Eukaryota 18013
216 Ga0500595_015434 3300053119 Bacteria 2867
217 Ga0500607_001335 3300053121 Eukaryota 22477
218 Ga0500621_000007 3300053126 Bacteria 214505
219 Ga0500659_0005415 3300053135 Eukaryota 7152
220 Ga0500564_010892 3300053138 Bacteria 3997
221 Ga0500600_0008435 3300053149 Eukaryota 6216
222 Ga0500622_0002345 3300053156 Bacteria 13779
223 Ga0500622_0004622 3300053156 Bacteria 8542
224 Ga0501084_0077313 3300054114 Bacteria 2790

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048905 Ga0496102_0104773 Ga0496102_0104773_18_1493 487
2 3300049578 Ga0501042_0018252 Ga0501042_0018252_14_1489 489
3 3300049591 Ga0501075_0146083 Ga0501075_0146083_313_1788 489
4 3300028786 Ga0307517_10000297 Ga0307517_1000029765 497
5 3300031456 Ga0307513_10001383 Ga0307513_100013834 497
6 3300031507 Ga0307509_10000657 Ga0307509_1000065734 497
7 3300031507 Ga0307509_10000708 Ga0307509_1000070850 497
8 3300033179 Ga0307507_10002232 Ga0307507_100022325 497
9 3300046461 Ga0495641_0028395 Ga0495641_0028395_782_2362 497
10 3300046463 Ga0495653_0051038 Ga0495653_0051038_99_1679 497
11 3300046533 Ga0495640_0006843 Ga0495640_0006843_6775_8451 497
12 3300046663 Ga0495635_0017482 Ga0495635_0017482_1425_3005 497
13 3300046674 Ga0495588_0000023 Ga0495588_0000023_159084_160655 497
14 3300046690 Ga0495624_0001098 Ga0495624_0001098_514_2094 497
15 3300048923 Ga0496120_0010527 Ga0496120_0010527_327_1895 497
16 3300053121 Ga0500607_001335 Ga0500607_001335_3970_5553 497
17 3300046515 Ga0495620_0004150 Ga0495620_0004150_779_2362 498
18 3300053149 Ga0500600_0008435 Ga0500600_0008435_2046_3653 498
19 3300048913 Ga0496110_0111213 Ga0496110_0111213_17_1537 502
20 3300030521 Ga0307511_10018374 Ga0307511_100183745 509
21 3300009545 Ga0105237_10098688 Ga0105237_100986881 513
22 3300010375 Ga0105239_10000638 Ga0105239_1000063837 513
23 3300025914 Ga0207671_10056325 Ga0207671_100563252 513
24 3300046529 Ga0495652_0030288 Ga0495652_0030288_1231_2922 515
25 3300048088 Ga0495602_0055079 Ga0495602_0055079_1317_3008 516
26 3300053135 Ga0500659_0005415 Ga0500659_0005415_2574_4283 516
27 3300053086 Ga0500578_0002053 Ga0500578_0002053_5391_7034 517
28 3300005272 Ga0065703_1020157 Ga0065703_10201571 533
29 3300006946 Ga0079104_1004187 Ga0079104_10041875 533
30 3300006946 Ga0079104_1005925 Ga0079104_10059255 533
31 3300009011 Ga0105251_10000732 Ga0105251_100007326 533
32 3300009011 Ga0105251_10002386 Ga0105251_1000238610 533
33 3300009092 Ga0105250_10003404 Ga0105250_100034045 533
34 3300009101 Ga0105247_10000061 Ga0105247_1000006139 533
35 3300009174 Ga0105241_10000005 Ga0105241_10000005310 533
36 3300013100 Ga0157373_10058113 Ga0157373_100581131 533
37 3300014497 Ga0182008_10001952 Ga0182008_1000195213 533
38 3300017792 Ga0163161_10000001 Ga0163161_10000001591 533
39 3300025711 Ga0207696_1000001 Ga0207696_1000001667 533
40 3300025735 Ga0207713_1000119 Ga0207713_1000119100 533
41 3300025735 Ga0207713_1000153 Ga0207713_100015392 533
42 3300025900 Ga0207710_10000285 Ga0207710_100002856 533
43 3300025911 Ga0207654_10000007 Ga0207654_1000000781 533
44 3300027111 Ga0209281_1000027 Ga0209281_1000027223 533
45 3300027111 Ga0209281_1003159 Ga0209281_10031593 533
46 3300046453 Ga0495627_000126 Ga0495627_000126_15240_16910 533
47 3300046530 Ga0495654_0002400 Ga0495654_0002400_6215_7885 533
48 3300046794 Ga0495589_0000004 Ga0495589_0000004_359956_361626 533
49 3300048906 Ga0496103_0008136 Ga0496103_0008136_2114_3784 533
50 3300048919 Ga0496116_0000001 Ga0496116_0000001_135894_137564 533
51 3300048920 Ga0496117_0000397 Ga0496117_0000397_3502_5172 533
52 3300048922 Ga0496119_0029251 Ga0496119_0029251_1555_3225 533
53 3300006946 Ga0079104_1001057 Ga0079104_100105715 534
54 3300027111 Ga0209281_1000048 Ga0209281_1000048272 534
55 3300046458 Ga0495591_011665 Ga0495591_011665_712_2385 535
56 3300046471 Ga0495650_0000176 Ga0495650_0000176_23479_25152 535
57 3300046501 Ga0495607_0009314 Ga0495607_0009314_142_1815 535
58 3300046513 Ga0495616_0009846 Ga0495616_0009846_341_2014 535
59 3300046523 Ga0495644_0006590 Ga0495644_0006590_552_2225 535
60 3300046524 Ga0495648_0011294 Ga0495648_0011294_2517_4190 535
61 3300046530 Ga0495654_0000168 Ga0495654_0000168_52700_54373 535
62 3300046694 Ga0495649_0004461 Ga0495649_0004461_3048_4721 535
63 3300046794 Ga0495589_0016528 Ga0495589_0016528_507_2180 535
64 3300046810 Ga0495660_0000010 Ga0495660_0000010_292878_294551 535
65 3300047320 Ga0495672_0000085 Ga0495672_0000085_114547_116220 535
66 3300047469 Ga0495673_0000086 Ga0495673_0000086_171925_173598 535
67 3300049459 Ga0495678_002166 Ga0495678_002166_2465_4138 535
68 3300049460 Ga0495682_0000024 Ga0495682_0000024_114224_115897 535
69 3300053126 Ga0500621_000007 Ga0500621_000007_113497_115170 535
70 3300009036 Ga0105244_10002673 Ga0105244_100026737 538
71 3300009092 Ga0105250_10000978 Ga0105250_100009784 538
72 3300025711 Ga0207696_1000705 Ga0207696_100070519 538
73 3300046530 Ga0495654_0003937 Ga0495654_0003937_7031_8701 538
74 3300046542 Ga0495597_0002268 Ga0495597_0002268_6404_8074 538
75 3300046660 Ga0495625_0003280 Ga0495625_0003280_4749_6419 538
76 3300046674 Ga0495588_0009651 Ga0495588_0009651_851_2521 538
77 3300047446 Ga0495679_000090 Ga0495679_000090_8027_9697 538
78 3300047470 Ga0495681_0044960 Ga0495681_0044960_62_1732 538
79 3300005289 Ga0065704_10085501 Ga0065704_100855011 539
80 3300041405 Ga0439438_003235 Ga0439438_003235_2319_3995 539
81 3300048927 Ga0496124_0025400 Ga0496124_0025400_2733_4409 539
82 3300031665 Ga0316575_10000512 Ga0316575_100005129 540
83 3300005289 Ga0065704_10001698 Ga0065704_100016985 541
84 iso_pu_bacteria 2990196909 2990200399 543
85 iso_pu_bacteria 8003400568 8003405105 544
86 3300048920 Ga0496117_0024922 Ga0496117_0024922_1774_3444 545
87 3300048925 Ga0496122_0000170 Ga0496122_0000170_148462_150132 545
88 3300048926 Ga0496123_0000058 Ga0496123_0000058_76484_78154 545
89 3300053119 Ga0500595_015434 Ga0500595_015434_206_1963 545
90 3300006946 Ga0079104_1001785 Ga0079104_10017859 546
91 3300013307 Ga0157372_10007192 Ga0157372_100071925 546
92 3300047469 Ga0495673_0000393 Ga0495673_0000393_25249_26922 546
93 3300048920 Ga0496117_0002272 Ga0496117_0002272_20914_22587 546
94 iso_pu_bacteria 2513237150 2513957130 546
95 iso_pu_bacteria 2513237165 2514043291 546
96 iso_pu_bacteria 2671180115 2671586268 546
97 iso_pu_bacteria 2901300506 2901307056 546
98 iso_pu_bacteria 644736347 644750129 546
99 3300005340 Ga0070689_100000028 Ga0070689_1000000283 547
100 3300005343 Ga0070687_100021805 Ga0070687_1000218051 547
101 3300005353 Ga0070669_100091139 Ga0070669_1000911391 547
102 3300005459 Ga0068867_100039978 Ga0068867_1000399782 547
103 3300005718 Ga0068866_10004881 Ga0068866_100048815 547
104 3300009148 Ga0105243_10157143 Ga0105243_101571432 547
105 3300025936 Ga0207670_10000541 Ga0207670_1000054116 547
106 3300025936 Ga0207670_10019651 Ga0207670_100196514 547
107 3300025937 Ga0207669_10031834 Ga0207669_100318342 547
108 3300025940 Ga0207691_10146377 Ga0207691_101463772 547
109 3300026089 Ga0207648_10003763 Ga0207648_1000376315 547
110 3300026118 Ga0207675_100127046 Ga0207675_1001270463 547
111 iso_pu_bacteria 8054849141 8054851233 547
112 3300031247 Ga0265340_10009671 Ga0265340_100096712 548
113 3300044669 Ga0466981_0000036 Ga0466981_0000036_51328_53007 548
114 iso_pu_bacteria 2904504865 2904505209 548
115 3300031250 Ga0265331_10006507 Ga0265331_100065076 549
116 3300031251 Ga0265327_10000068 Ga0265327_1000006845 549
117 iso_pu_bacteria 2506520007 2506577884 549
118 iso_pu_bacteria 2506520008 2506583022 549
119 iso_pu_bacteria 2508501071 2508851845 549
120 iso_pu_bacteria 2547132181 2547694407 549
121 iso_pu_bacteria 2561511199 2562466480 549
122 iso_pu_bacteria 2654587920 2656278445 549
123 iso_pu_bacteria 2687453601 2689444408 549
124 iso_pu_bacteria 2791355010 2792312291 549
125 iso_pu_bacteria 2806310673 2807176334 549
126 iso_pu_bacteria 2858466076 2858466095 549
127 iso_pu_bacteria 2869551831 2869553758 549
128 iso_pu_bacteria 2871272651 2871273495 549
129 iso_pu_bacteria 2935625433 2935627571 549
130 iso_pu_bacteria 2939617950 2939621583 549
131 iso_pu_bacteria 640753048 640937411 549
132 iso_pu_bacteria 8019504834 8019508275 549
133 3300005329 Ga0070683_100043208 Ga0070683_1000432082 550
134 3300006948 Ga0099826_10000065 Ga0099826_1000006513 550
135 3300025294 Ga0209025_1022087 Ga0209025_10220872 550
136 3300025299 Ga0209256_1000335 Ga0209256_100033557 550
137 3300025303 Ga0209051_1015627 Ga0209051_10156273 550
138 3300027666 Ga0209282_1000057 Ga0209282_100005772 550
139 3300028800 Ga0265338_10004703 Ga0265338_1000470313 550
140 3300031711 Ga0265314_10015754 Ga0265314_100157541 550
141 3300031712 Ga0265342_10005949 Ga0265342_100059492 550
142 3300046474 Ga0495605_0007711 Ga0495605_0007711_2927_4621 550
143 3300046500 Ga0495596_0000038 Ga0495596_0000038_85263_86957 550
144 3300046512 Ga0495610_0000141 Ga0495610_0000141_75038_76732 550
145 3300046513 Ga0495616_0004693 Ga0495616_0004693_3965_5659 550
146 3300046538 Ga0495609_0002182 Ga0495609_0002182_9195_10889 550
147 3300046692 Ga0495671_0000462 Ga0495671_0000462_3462_5147 550
148 3300047320 Ga0495672_0013900 Ga0495672_0013900_2869_4563 550
149 3300048924 Ga0496121_0023038 Ga0496121_0023038_1304_2998 550
150 3300048925 Ga0496122_0008004 Ga0496122_0008004_6657_8351 550
151 3300049580 Ga0501046_0121225 Ga0501046_0121225_246_1943 550
152 3300053138 Ga0500564_010892 Ga0500564_010892_1087_2802 550
153 3300053156 Ga0500622_0002345 Ga0500622_0002345_8102_9799 550
154 3300053156 Ga0500622_0004622 Ga0500622_0004622_3819_5516 550
155 3300003771 Ga0055526_1001224 Ga0055526_10012248 551
156 3300003771 Ga0055526_1005080 Ga0055526_10050805 551
157 3300003781 Ga0055536_1002014 Ga0055536_10020148 551
158 3300003784 Ga0055534_1003824 Ga0055534_10038242 551
159 3300005356 Ga0070674_100019606 Ga0070674_1000196061 551
160 3300005366 Ga0070659_100107115 Ga0070659_1001071151 551
161 3300005577 Ga0068857_100076569 Ga0068857_1000765692 551
162 3300006051 Ga0075364_10077361 Ga0075364_100773612 551
163 3300009098 Ga0105245_10075031 Ga0105245_100750313 551
164 3300013308 Ga0157375_10066474 Ga0157375_100664742 551
165 3300013308 Ga0157375_10105589 Ga0157375_101055892 551
166 3300025291 Ga0209675_1000092 Ga0209675_100009262 551
167 3300025292 Ga0209676_1000378 Ga0209676_100037864 551
168 3300025294 Ga0209025_1001345 Ga0209025_10013458 551
169 3300025295 Ga0209564_1000489 Ga0209564_100048922 551
170 3300025295 Ga0209564_1000655 Ga0209564_100065541 551
171 3300025927 Ga0207687_10066096 Ga0207687_100660961 551
172 3300025937 Ga0207669_10051202 Ga0207669_100512022 551
173 3300026116 Ga0207674_10091026 Ga0207674_100910262 551
174 3300031251 Ga0265327_10000145 Ga0265327_1000014518 551
175 3300046507 Ga0495606_0009555 Ga0495606_0009555_3392_5101 551
176 3300049572 Ga0501036_0037787 Ga0501036_0037787_420_2090 551
177 3300049576 Ga0501040_0001117 Ga0501040_0001117_10366_12036 551
178 3300049577 Ga0501041_0019984 Ga0501041_0019984_817_2487 551
179 3300049580 Ga0501046_0015979 Ga0501046_0015979_387_2057 551
180 3300049582 Ga0501048_0116181 Ga0501048_0116181_26_1696 551
181 3300049588 Ga0501072_0014707 Ga0501072_0014707_420_2090 551
182 3300049590 Ga0501074_0011732 Ga0501074_0011732_1158_2828 551
183 3300049591 Ga0501075_0002447 Ga0501075_0002447_10207_11877 551
184 3300049592 Ga0501076_0002150 Ga0501076_0002150_4166_5836 551
185 3300049593 Ga0501077_0057564 Ga0501077_0057564_610_2280 551
186 3300049741 Ga0501079_0003860 Ga0501079_0003860_3664_5334 551
187 3300049743 Ga0501081_0045540 Ga0501081_0045540_697_2367 551
188 3300049824 Ga0501045_0005329 Ga0501045_0005329_1068_2738 551
189 3300054114 Ga0501084_0077313 Ga0501084_0077313_287_1957 551
190 iso_pu_bacteria 2908669403 2908671617 551
191 3300003187 JGI25151J46595_10000412 JGI25151J46595_1000041221 552
192 3300003771 Ga0055526_1016237 Ga0055526_10162373 552
193 3300003775 Ga0055524_1000690 Ga0055524_10006903 552
194 3300003784 Ga0055534_1002195 Ga0055534_10021953 552
195 3300005539 Ga0068853_100000924 Ga0068853_10000092413 552
196 3300005563 Ga0068855_100056962 Ga0068855_1000569623 552
197 3300005617 Ga0068859_100010177 Ga0068859_1000101772 552
198 3300006931 Ga0097620_100010177 Ga0097620_1000101772 552
199 3300009036 Ga0105244_10001226 Ga0105244_1000122618 552
200 3300009092 Ga0105250_10000003 Ga0105250_1000000311 552
201 3300009551 Ga0105238_10000241 Ga0105238_1000024112 552
202 3300009551 Ga0105238_10000241 Ga0105238_1000024153 552
203 3300013104 Ga0157370_10003716 Ga0157370_100037166 552
204 3300025263 Ga0209565_1000196 Ga0209565_10001969 552
205 3300025273 Ga0209673_1022617 Ga0209673_10226172 552
206 3300025291 Ga0209675_1000992 Ga0209675_100099214 552
207 3300025294 Ga0209025_1000222 Ga0209025_100022261 552
208 3300025295 Ga0209564_1000582 Ga0209564_100058212 552
209 3300025299 Ga0209256_1000362 Ga0209256_100036238 552
210 3300025711 Ga0207696_1000004 Ga0207696_1000004623 552
211 3300025924 Ga0207694_10001927 Ga0207694_1000192712 552
212 3300025949 Ga0207667_10064046 Ga0207667_100640461 552
213 3300035724 Ga0373933_0005172 Ga0373933_0005172_4826_6562 552
214 3300047470 Ga0495681_0020450 Ga0495681_0020450_1367_3034 552
215 iso_pu_bacteria 2772190666 2772438407 552
216 iso_pu_bacteria 2888366609 2888368481 552
217 iso_pu_bacteria 2937967321 2937970159 552
218 iso_pu_bacteria 8015394850 8015399629 552
219 3300002773 JGI25152J39213_1001916 JGI25152J39213_10019164 553
220 3300003856 Ga0058692_1001968 Ga0058692_10019683 553
221 3300013102 Ga0157371_10003080 Ga0157371_100030802 553
222 3300013105 Ga0157369_10002468 Ga0157369_100024683 553
223 3300013307 Ga0157372_10004484 Ga0157372_100044843 553
224 3300025258 Ga0209129_1000015 Ga0209129_1000015309 553
225 3300027312 Ga0209371_1000026 Ga0209371_1000026349 553
226 3300027312 Ga0209371_1003072 Ga0209371_10030725 553
227 3300030500 Ga0268256_1000003 Ga0268256_1000003349 553
228 3300030500 Ga0268256_1004891 Ga0268256_10048915 553
229 3300041405 Ga0439438_000005 Ga0439438_000005_13533_15263 553
230 3300042010 Ga0439452_000029 Ga0439452_000029_39311_40981 553
231 3300048919 Ga0496116_0044411 Ga0496116_0044411_76_1746 553
232 3300048920 Ga0496117_0005424 Ga0496117_0005424_349_2019 553
233 3300048921 Ga0496118_0047665 Ga0496118_0047665_820_2490 553
234 3300048921 Ga0496118_0053766 Ga0496118_0053766_1146_2816 553
235 3300048922 Ga0496119_0000045 Ga0496119_0000045_104467_106137 553
236 3300048925 Ga0496122_0029899 Ga0496122_0029899_643_2313 553
237 3300048927 Ga0496124_0000361 Ga0496124_0000361_11911_13704 553
238 3300048928 Ga0496125_0006432 Ga0496125_0006432_3214_5076 553
239 3300049572 Ga0501036_0013210 Ga0501036_0013210_1354_3048 553
240 3300025921 Ga0207652_10068964 Ga0207652_100689642 554
241 3300046678 Ga0495599_0060152 Ga0495599_0060152_345_2057 554
242 3300049571 Ga0501034_0001644 Ga0501034_0001644_8972_10684 554
243 3300049588 Ga0501072_0028714 Ga0501072_0028714_2604_4316 554
244 3300049742 Ga0501080_0007029 Ga0501080_0007029_7057_8769 554
245 3300003856 Ga0058692_1000066 Ga0058692_100006645 556
246 3300020080 Ga0206350_10272446 Ga0206350_102724461 556
247 3300027312 Ga0209371_1000183 Ga0209371_100018349 556
248 3300030500 Ga0268256_1000155 Ga0268256_100015547 556
249 3300044694 Ga0466963_0018719 Ga0466963_0018719_1887_3710 558
250 2162886007 SwRhRL2b_contig_580025 SwRhRL2b_0350.00002870 560
251 3300005289 Ga0065704_10000185 Ga0065704_10000185401 560
252 3300005295 Ga0065707_10082305 Ga0065707_1008230510 560
253 2162886007 SwRhRL2b_contig_1785375 SwRhRL2b_0709.00002330 573
254 3300005289 Ga0065704_10070163 Ga0065704_1007016350 573
255 3300005295 Ga0065707_10000476 Ga0065707_100004764 573

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00682

HMGL-like

HMGL-like

32

317

0.98

PF22615

IPMS_D2

Alpha-isopropylmalate synthase, post-catalytic domain-like

334

402

0.93

PF08502

LeuA_dimer

LeuA allosteric (dimerisation) domain

431

585

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
3hpx-assembly1.cif.gz_A crystal structure of mycobacterium tuberculosis leua active site domain 1-425 (truncation mutant delta:426-644) 0.957 3 380
3u6w-assembly1.cif.gz_A truncated m. tuberculosis leua (1-425) complexed with kiv 0.9493 3 380
3u6w-assembly1.cif.gz_B truncated m. tuberculosis leua (1-425) complexed with kiv 0.9443 3 380
3ewb-assembly1.cif.gz_X-2 crystal structure of n-terminal domain of putative 2-isopropylmalate synthase from listeria monocytogenes 0.9219 26 314
3eeg-assembly1.cif.gz_B crystal structure of a 2-isopropylmalate synthase from cytophaga hutchinsonii 0.9192 29 318
ID Description Score Start End Superfamily
3hpxB01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9704 20 318 3.20.20.70
3hpxB01 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9672 20 318 3.20.20.70
af_A0A1D8PIF8_384_564_3.30.160.270 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Alpha-isopropylmalate synthase LeuA, regulatory domain 0.9666 384 566 3.30.160.270
af_P9WQB3_49_425_3.20.20.70 Alpha Beta;Alpha-Beta Barrel;TIM Barrel;Aldolase class I 0.9636 14 380 3.20.20.70
af_A0A1D8PIF8_384_564_3.30.160.270 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain;Alpha-isopropylmalate synthase LeuA, regulatory domain 0.9614 384 566 3.30.160.270
ID Description Score Start End GO Terms
AF-G2WMY3-F1-model_v4 K7_Leu9ap 0.9773 1 199 GO:0003852
GO:0005739
GO:0009098
AF-F7SY31-F1-model_v4 Pyruvate carboxyltransferase domain-containing protein 0.9771 39 328 GO:0003852
GO:0019752
AF-A0A444ATE0-F1-model_v4 deleted 0.9749 111 325
AF-A0A2X1RGI3-F1-model_v4 2-isopropylmalate synthase (EC 2.3.3.13) 0.973 100 345 GO:0003852
GO:0019752
AF-A0A7S3WVP5-F1-model_v4 2-isopropylmalate synthase (EC 2.3.3.13) 0.9729 49 348 GO:0019752
GO:0046912

Feature Viewer

pLDDT pTM Quality
88.73 0.76 High
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Predicted Structure (AlphaFold2)

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