F363859

General Info

Members Datasets Scaffolds Average Seq Length
253 138 253 202

Family's Representative Sequence

Representative Sequence 3300005445|Ga0070708_100000330|Ga0070708_10000033024
Length 240
Sequence MNFRIEDLKFDEYGLIPAIVQDAQTREVLTLAYMNRESLERTVATSSTWFWSRSRSELWHKGETSGNTQRVIELILDCDQDAIVVLVQPAGPACHTGERTCFHNAVGSDVQGLTSDTQRSVEVTQSKVWTSESRNDNREAEDLGVLLNQLYDLVESRKRERPEGSYTTYLFNEGLDKILKKVGEESAETIIAAKNENRTGLVAEVSDLIYHLLVLLVERGVSLAEIRQELAHRGKRASRD

Samples

Sample ID Description Type Environment
1 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
5 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
6 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
9 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
10 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
11 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
12 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
15 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
16 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
17 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
18 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
19 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
20 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
21 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
22 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
23 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
24 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
25 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
26 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
27 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
28 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
29 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
30 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
31 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
32 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
33 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
34 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
35 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
36 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
37 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
38 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
39 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
40 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
41 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
42 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
43 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
44 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
45 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
46 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
47 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
48 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
49 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
51 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
52 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
53 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
54 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
55 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
56 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
57 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
58 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
59 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
60 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
61 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
62 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
63 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
64 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
65 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
66 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
67 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
68 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
92 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
93 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
94 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
95 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
96 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
97 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
98 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
99 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
100 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
101 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
102 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
103 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
104 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
105 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
106 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
107 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
108 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
109 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
110 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
111 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
112 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
113 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
114 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
115 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
116 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
117 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
118 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
119 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
120 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
121 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
122 3300049651 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F3_A_0_drought Metagenome Rhizosphere
123 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
124 3300049654 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_A_0_control Metagenome Rhizosphere
125 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
126 3300049681 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_B_3_drought Metagenome Rhizosphere
127 3300049704 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G2_A_2_control Metagenome Rhizosphere
128 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
129 3300049765 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought Metagenome Rhizosphere
130 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
131 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
132 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
133 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
134 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
135 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
136 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
137 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
138 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 3.16
Rhizosphere 94.47
Stem 0
Stem Tuber 0
Unclassified 2.37

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 MRS1b_contig_1271543 2162886011 Bacteria 1554
2 rootL2_10183500 3300003322 Bacteria 2168
3 Ga0065714_10064450 3300005288 Bacteria 77548
4 Ga0065712_10067784 3300005290 Bacteria 36245
5 Ga0065715_10091307 3300005293 Bacteria 5899
6 Ga0065715_10137370 3300005293 Bacteria 1908
7 Ga0065707_10285790 3300005295 Bacteria 1036
8 Ga0070683_100000027 3300005329 Bacteria 172200
9 Ga0070683_100157360 3300005329 Bacteria 2155
10 Ga0070670_100000025 3300005331 Bacteria 188514
11 Ga0070670_100058581 3300005331 Bacteria 3306
12 Ga0070670_100303147 3300005331 Bacteria 1398
13 Ga0068869_100032731 3300005334 Bacteria 3666
14 Ga0070680_100000103 3300005336 Bacteria 48805
15 Ga0070680_100070934 3300005336 Bacteria 2862
16 Ga0070680_100461537 3300005336 Bacteria 1085
17 Ga0070682_100031615 3300005337 Unclassified 3202
18 Ga0070687_100060413 3300005343 Bacteria 1999
19 Ga0070687_100159531 3300005343 Bacteria 1332
20 Ga0070675_100000011 3300005354 Bacteria 242011
21 Ga0070703_10000215 3300005406 Bacteria 27728
22 Ga0070701_10000534 3300005438 Bacteria 13095
23 Ga0070705_100000217 3300005440 Bacteria 34074
24 Ga0070694_100107589 3300005444 Bacteria 1982
25 Ga0070694_100271394 3300005444 Unclassified 1290
26 Ga0070694_100325493 3300005444 Unclassified 1184
27 Ga0070708_100000330 3300005445 Bacteria 35639
28 Ga0070708_100461993 3300005445 Unclassified 1198
29 Ga0070681_10000095 3300005458 Bacteria 65410
30 Ga0070706_100000636 3300005467 Bacteria 40219
31 Ga0070706_100026011 3300005467 Bacteria 5385
32 Ga0070706_100039772 3300005467 Bacteria 4340
33 Ga0070706_100040171 3300005467 Bacteria 4318
34 Ga0070707_100001342 3300005468 Bacteria 24199
35 Ga0070707_100019048 3300005468 Bacteria 6463
36 Ga0070707_100030588 3300005468 Bacteria 5127
37 Ga0070707_100182747 3300005468 Bacteria 2044
38 Ga0070707_100416906 3300005468 Bacteria 1303
39 Ga0070698_100061006 3300005471 Bacteria 3804
40 Ga0070698_100107712 3300005471 Bacteria 2754
41 Ga0070698_100135382 3300005471 Bacteria 2418
42 Ga0070698_100286282 3300005471 Unclassified 1579
43 Ga0070699_100000022 3300005518 Bacteria 162893
44 Ga0070699_100000914 3300005518 Bacteria 27512
45 Ga0070699_100016861 3300005518 Bacteria 6271
46 Ga0070699_100068789 3300005518 Bacteria 3076
47 Ga0070699_100528333 3300005518 Unclassified 1073
48 Ga0070679_100000661 3300005530 Bacteria 29364
49 Ga0070684_100011258 3300005535 Bacteria 7123
50 Ga0070697_100043038 3300005536 Bacteria 3655
51 Ga0070697_100154443 3300005536 Unclassified 1936
52 Ga0070697_100309886 3300005536 Bacteria 1358
53 Ga0068853_100067943 3300005539 Unclassified 3097
54 Ga0068853_100449345 3300005539 Bacteria 1212
55 Ga0070672_100107429 3300005543 Bacteria 2271
56 Ga0070695_100075276 3300005545 Unclassified 2220
57 Ga0070695_100113487 3300005545 Bacteria 1843
58 Ga0070695_100543517 3300005545 Bacteria 905
59 Ga0070696_100000004 3300005546 Bacteria 126811
60 Ga0070696_100027866 3300005546 Bacteria 3852
61 Ga0070696_100041100 3300005546 Bacteria 3194
62 Ga0070696_100047659 3300005546 Unclassified 2974
63 Ga0070696_100148311 3300005546 Bacteria 1719
64 Ga0070696_100194624 3300005546 Bacteria 1511
65 Ga0070693_100279535 3300005547 Bacteria 1117
66 Ga0070704_100326632 3300005549 Bacteria 1287
67 Ga0068855_100669647 3300005563 Unclassified 1113
68 Ga0068857_100013493 3300005577 Bacteria 7118
69 Ga0068854_100013444 3300005578 Bacteria 5374
70 Ga0068854_100034557 3300005578 Bacteria 3533
71 Ga0068854_100407033 3300005578 Bacteria 1127
72 Ga0068856_100020838 3300005614 Bacteria 6371
73 Ga0070702_100049630 3300005615 Bacteria 2394
74 Ga0070702_100310975 3300005615 Bacteria 1094
75 Ga0068861_100287600 3300005719 Bacteria 1418
76 Ga0075428_100032363 3300006844 Bacteria 5776
77 Ga0075428_100124694 3300006844 Bacteria 2803
78 Ga0075428_100148053 3300006844 Bacteria 2551
79 Ga0075428_100201735 3300006844 Bacteria 2150
80 Ga0075431_100377944 3300006847 Bacteria 1421
81 Ga0075431_100445260 3300006847 Bacteria 1292
82 Ga0075433_10004151 3300006852 Bacteria 11245
83 Ga0075433_10115039 3300006852 Bacteria 2387
84 Ga0075434_100046901 3300006871 Bacteria 4287
85 Ga0075434_100065358 3300006871 Bacteria 3623
86 Ga0075434_100087578 3300006871 Bacteria 3115
87 Ga0075434_100388108 3300006871 Bacteria 1417
88 Ga0075434_100564412 3300006871 Bacteria 1158
89 Ga0075434_101253337 3300006871 Unclassified 753
90 Ga0075434_101544353 3300006871 Bacteria 673
91 Ga0075429_100264248 3300006880 Bacteria 1507
92 Ga0075429_100480209 3300006880 Bacteria 1089
93 Ga0075436_100000008 3300006914 Bacteria 279288
94 Ga0075436_100009404 3300006914 Bacteria 6682
95 Ga0075435_100007940 3300007076 Bacteria 7594
96 Ga0075435_100117432 3300007076 Bacteria 2217
97 Ga0075435_100147139 3300007076 Bacteria 1979
98 Ga0075435_100352159 3300007076 Bacteria 1262
99 Ga0099794_10280581 3300007265 Bacteria 861
100 Ga0111539_10000030 3300009094 Bacteria 175454
101 Ga0111539_10353631 3300009094 Bacteria 1710
102 Ga0111539_10557328 3300009094 Unclassified 1335
103 Ga0105245_10000052 3300009098 Bacteria 126402
104 Ga0114129_10001731 3300009147 Bacteria 29753
105 Ga0114129_10036520 3300009147 Bacteria 6937
106 Ga0114129_10037430 3300009147 Bacteria 6849
107 Ga0114129_10043898 3300009147 Bacteria 6289
108 Ga0114129_10093558 3300009147 Bacteria 4164
109 Ga0114129_10261730 3300009147 Bacteria 2318
110 Ga0114129_10688659 3300009147 Bacteria 1315
111 Ga0114129_10950391 3300009147 Bacteria 1086
112 Ga0114129_11194773 3300009147 Bacteria 948
113 Ga0105243_10294215 3300009148 Unclassified 1468
114 Ga0105243_10525757 3300009148 Bacteria 1126
115 Ga0105241_10307722 3300009174 Bacteria 1362
116 Ga0105241_10662492 3300009174 Bacteria 949
117 Ga0105242_10817299 3300009176 Bacteria 924
118 Ga0105248_10953247 3300009177 Bacteria 969
119 Ga0105237_10293993 3300009545 Unclassified 1627
120 Ga0105238_10000002 3300009551 Bacteria 772711
121 Ga0105249_10673166 3300009553 Unclassified 1093
122 Ga0105246_10760612 3300011119 Unclassified 856
123 Ga0157373_10013614 3300013100 Bacteria 5967
124 Ga0157369_10000431 3300013105 Bacteria 55677
125 Ga0157374_10000016 3300013296 Bacteria 293656
126 Ga0157378_10000948 3300013297 Bacteria 26647
127 Ga0157378_10001650 3300013297 Bacteria 20170
128 Ga0157378_10105397 3300013297 Bacteria 2578
129 Ga0157378_10307196 3300013297 Bacteria 1537
130 Ga0157372_10047127 3300013307 Unclassified 4788
131 Ga0157375_10000010 3300013308 Bacteria 361011
132 Ga0157377_10000004 3300014745 Bacteria 430019
133 Ga0157377_10000041 3300014745 Bacteria 110626
134 Ga0157376_10000018 3300014969 Bacteria 259397
135 Ga0213873_10014361 3300021358 Bacteria 1754
136 Ga0213876_10002233 3300021384 Bacteria 11424
137 Ga0213876_10157450 3300021384 Bacteria 1208
138 Ga0207653_10000230 3300025885 Bacteria 37329
139 Ga0207684_10000463 3300025910 Bacteria 52595
140 Ga0207684_10098930 3300025910 Bacteria 2491
141 Ga0207684_10106242 3300025910 Bacteria 2401
142 Ga0207684_10330549 3300025910 Bacteria 1313
143 Ga0207654_10486165 3300025911 Bacteria 870
144 Ga0207707_10000503 3300025912 Bacteria 40256
145 Ga0207660_10003576 3300025917 Bacteria 10120
146 Ga0207660_10053623 3300025917 Bacteria 2875
147 Ga0207652_10000427 3300025921 Bacteria 43779
148 Ga0207646_10003379 3300025922 Bacteria 18052
149 Ga0207646_10031134 3300025922 Bacteria 4831
150 Ga0207646_10105115 3300025922 Bacteria 2532
151 Ga0207694_10000001 3300025924 Bacteria 4078485
152 Ga0207650_10000117 3300025925 Bacteria 104348
153 Ga0207650_10116797 3300025925 Bacteria 2072
154 Ga0207650_10229316 3300025925 Bacteria 1497
155 Ga0207650_10712892 3300025925 Unclassified 848
156 Ga0207650_10995667 3300025925 Bacteria 713
157 Ga0207687_10000005 3300025927 Bacteria 770649
158 Ga0207709_10155431 3300025935 Bacteria 1589
159 Ga0207691_10140424 3300025940 Bacteria 2129
160 Ga0207689_10015904 3300025942 Bacteria 6371
161 Ga0207689_10020967 3300025942 Bacteria 5493
162 Ga0207661_10000015 3300025944 Bacteria 318960
163 Ga0207661_10137082 3300025944 Bacteria 2103
164 Ga0207651_10776289 3300025960 Bacteria 848
165 Ga0207712_10440921 3300025961 Unclassified 1102
166 Ga0207640_10000966 3300025981 Bacteria 15956
167 Ga0207640_10131358 3300025981 Bacteria 1811
168 Ga0207640_10298091 3300025981 Bacteria 1274
169 Ga0207677_10000075 3300026023 Bacteria 83195
170 Ga0207639_10085036 3300026041 Unclassified 2515
171 Ga0207639_10441601 3300026041 Bacteria 1180
172 Ga0207702_10016026 3300026078 Bacteria 6204
173 Ga0207641_10506439 3300026088 Bacteria 1173
174 Ga0207674_10031984 3300026116 Bacteria 5521
175 Ga0207675_100218569 3300026118 Bacteria 1835
176 Ga0307511_10001491 3300030521 Bacteria 24787
177 Ga0307513_10000709 3300031456 Bacteria 47882
178 Ga0307408_100369731 3300031548 Bacteria 1222
179 Ga0307406_10382654 3300031901 Bacteria 1110
180 Ga0307412_10248725 3300031911 Bacteria 1379
181 Ga0307412_10293045 3300031911 Bacteria 1283
182 Ga0307409_100213326 3300031995 Bacteria 1737
183 Ga0307409_100905808 3300031995 Bacteria 896
184 Ga0307416_100248353 3300032002 Bacteria 1730
185 Ga0307416_100542029 3300032002 Bacteria 1235
186 Ga0307414_10325825 3300032004 Bacteria 1309
187 Ga0307411_10253681 3300032005 Bacteria 1385
188 Ga0373932_0000069 3300035112 Bacteria 25689
189 Ga0373939_0018048 3300035114 Bacteria 1883
190 Ga0373943_0019950 3300035170 Bacteria 3088
191 Ga0373955_0348264 3300035172 Unclassified 897
192 Ga0373931_0011041 3300035691 Bacteria 4355
193 Ga0395899_0328652 3300037312 Unclassified 1028
194 Ga0395900_1013675 3300037418 Unclassified 750
195 Ga0395898_0846877 3300037466 Bacteria 854
196 Ga0395905_0006255 3300037471 Bacteria 12019
197 Ga0395905_0923678 3300037471 Unclassified 776
198 Ga0436365_0877978 3300039437 Bacteria 2161
199 Ga0436362_0953380 3300039453 Bacteria 7478
200 Ga0453683_0382115 3300044673 Unclassified 907
201 Ga0466960_0044897 3300044901 Bacteria 2109
202 Ga0451576_0432190 3300045051 Bacteria 1382
203 Ga0451576_0584562 3300045051 Bacteria 1174
204 Ga0495636_0173193 3300047318 Bacteria 976
205 Ga0496102_0120132 3300048905 Unclassified 2454
206 Ga0496104_0125774 3300048907 Unclassified 2461
207 Ga0496106_0041499 3300048909 Bacteria 3448
208 Ga0496106_0071225 3300048909 Unclassified 2657
209 Ga0496106_0207224 3300048909 Bacteria 1561
210 Ga0496107_0043471 3300048910 Unclassified 3228
211 Ga0496107_0104582 3300048910 Unclassified 2078
212 Ga0496109_0324279 3300048912 Bacteria 1454
213 Ga0501048_0022757 3300049582 Bacteria 4582
214 Ga0501077_0442030 3300049593 Unclassified 833
215 Ga0501201_012554 3300049651 Bacteria 845
216 Ga0501202_050007 3300049652 Bacteria 924
217 Ga0501207_059648 3300049654 Bacteria 697
218 Ga0501217_012933 3300049661 Bacteria 1867
219 Ga0501251_022311 3300049681 Bacteria 850
220 Ga0501221_051791 3300049704 Bacteria 927
221 Ga0501225_0075071 3300049705 Bacteria 965
222 Ga0501268_017237 3300049765 Bacteria 1204
223 nmdc:mga05p37_101035_c1 3300050507 Bacteria 3552
224 nmdc:mga05p37_112294_c1 3300050507 Unclassified 3351
225 nmdc:mga05p37_1484003_c1 3300050507 Bacteria 676
226 nmdc:mga05p37_26347_c1 3300050507 Bacteria 7072
227 nmdc:mga05p37_38893_c2 3300050507 Bacteria 4805
228 nmdc:mga05p37_585143_c1 3300050507 Bacteria 1263
229 nmdc:mga05p37_76797_c1 3300050507 Bacteria 4112
230 nmdc:mga09592_355078_c1 3300050508 Bacteria 1268
231 nmdc:mga06r32_904936_c1 3300050510 Unclassified 839
232 nmdc:mga08y16_22139_c1 3300050511 Bacteria 6710
233 nmdc:mga08y16_914593_c1 3300050511 Unclassified 863
234 nmdc:mga0n895_136549_c1 3300050512 Bacteria 2479
235 nmdc:mga0n895_232457_c1 3300050512 Unclassified 1871
236 nmdc:mga0n895_240523_c1 3300050512 Bacteria 1837
237 nmdc:mga0n895_390836_c1 3300050512 Unclassified 1407
238 nmdc:mga0n895_405808_c1 3300050512 Bacteria 1378
239 nmdc:mga0n895_440990_c1 3300050512 Bacteria 1315
240 nmdc:mga0n895_47689_c1 3300050512 Bacteria 4189
241 nmdc:mga0n895_642159_c1 3300050512 Bacteria 1061
242 nmdc:mga0rr50_18047_c1 3300050513 Bacteria 4730
243 nmdc:mga0rr50_3070_c1 3300050513 Bacteria 9561
244 nmdc:mga0rr50_440446_c1 3300050513 Bacteria 1104
245 nmdc:mga0rr50_5257_c1 3300050513 Bacteria 7702
246 nmdc:mga0rr50_610680_c1 3300050513 Unclassified 930
247 nmdc:mga08x19_16_c1 3300050514 Bacteria 348119
248 nmdc:mga08x19_683850_c1 3300050514 Bacteria 728
249 nmdc:mga0a205_128326_c1 3300050515 Bacteria 2436
250 nmdc:mga0a205_31625_c1 3300050515 Bacteria 5072
251 nmdc:mga0a205_44172_c1 3300050515 Bacteria 4295
252 nmdc:mga0a205_88707_c1 3300050515 Bacteria 2265
253 Ga0495595_0211784 3300053084 Unclassified 966

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300005467 Ga0070706_100040171 Ga0070706_1000401712 156
2 3300005468 Ga0070707_100019048 Ga0070707_1000190482 156
3 3300005518 Ga0070699_100016861 Ga0070699_1000168617 156
4 3300025910 Ga0207684_10330549 Ga0207684_103305492 156
5 3300025922 Ga0207646_10031134 Ga0207646_100311345 156
6 3300005471 Ga0070698_100061006 Ga0070698_1000610065 157
7 3300050507 nmdc:mga05p37_585143_c1 nmdc:mga05p37_585143_c1_37_552 167
8 3300035172 Ga0373955_0348264 Ga0373955_0348264_344_871 171
9 3300050510 nmdc:mga06r32_904936_c1 nmdc:mga06r32_904936_c1_308_829 171
10 3300050507 nmdc:mga05p37_38893_c2 nmdc:mga05p37_38893_c2_4004_4534 174
11 3300005468 Ga0070707_100416906 Ga0070707_1004169062 178
12 3300050507 nmdc:mga05p37_1484003_c1 nmdc:mga05p37_1484003_c1_40_591 180
13 3300005329 Ga0070683_100000027 Ga0070683_10000002760 181
14 3300005331 Ga0070670_100000025 Ga0070670_10000002576 181
15 3300005535 Ga0070684_100011258 Ga0070684_1000112588 181
16 3300005578 Ga0068854_100034557 Ga0068854_1000345575 181
17 3300013105 Ga0157369_10000431 Ga0157369_1000043141 181
18 3300013296 Ga0157374_10000016 Ga0157374_10000016131 181
19 3300014745 Ga0157377_10000004 Ga0157377_1000000488 181
20 3300014969 Ga0157376_10000018 Ga0157376_10000018119 181
21 3300025925 Ga0207650_10000117 Ga0207650_1000011785 181
22 3300025944 Ga0207661_10000015 Ga0207661_10000015125 181
23 3300005293 Ga0065715_10137370 Ga0065715_101373702 182
24 3300005331 Ga0070670_100058581 Ga0070670_1000585816 182
25 3300005337 Ga0070682_100031615 Ga0070682_1000316152 182
26 3300005343 Ga0070687_100159531 Ga0070687_1001595311 182
27 3300005445 Ga0070708_100461993 Ga0070708_1004619932 182
28 3300005467 Ga0070706_100039772 Ga0070706_1000397723 182
29 3300005471 Ga0070698_100286282 Ga0070698_1002862823 182
30 3300005518 Ga0070699_100068789 Ga0070699_1000687893 182
31 3300005536 Ga0070697_100154443 Ga0070697_1001544431 182
32 3300005536 Ga0070697_100309886 Ga0070697_1003098862 182
33 3300006844 Ga0075428_100201735 Ga0075428_1002017352 182
34 3300006847 Ga0075431_100445260 Ga0075431_1004452602 182
35 3300006871 Ga0075434_101544353 Ga0075434_1015443531 182
36 3300006880 Ga0075429_100480209 Ga0075429_1004802092 182
37 3300009098 Ga0105245_10000052 Ga0105245_1000005298 182
38 3300009551 Ga0105238_10000002 Ga0105238_10000002279 182
39 3300013297 Ga0157378_10000948 Ga0157378_1000094810 182
40 3300013297 Ga0157378_10001650 Ga0157378_1000165011 182
41 3300025910 Ga0207684_10106242 Ga0207684_101062423 182
42 3300025924 Ga0207694_10000001 Ga0207694_10000001281 182
43 3300025925 Ga0207650_10116797 Ga0207650_101167971 182
44 3300025925 Ga0207650_10229316 Ga0207650_102293162 182
45 3300025925 Ga0207650_10995667 Ga0207650_109956672 182
46 3300025927 Ga0207687_10000005 Ga0207687_1000000519 182
47 3300025981 Ga0207640_10298091 Ga0207640_102980911 182
48 3300030521 Ga0307511_10001491 Ga0307511_100014916 182
49 3300035112 Ga0373932_0000069 Ga0373932_0000069_8578_9138 182
50 3300048909 Ga0496106_0207224 Ga0496106_0207224_460_1020 182
51 3300050508 nmdc:mga09592_355078_c1 nmdc:mga09592_355078_c1_228_788 182
52 3300050512 nmdc:mga0n895_405808_c1 nmdc:mga0n895_405808_c1_756_1316 182
53 3300005615 Ga0070702_100310975 Ga0070702_1003109752 183
54 3300011119 Ga0105246_10760612 Ga0105246_107606121 183
55 3300005577 Ga0068857_100013493 Ga0068857_1000134936 184
56 3300025960 Ga0207651_10776289 Ga0207651_107762891 184
57 3300026116 Ga0207674_10031984 Ga0207674_100319845 184
58 3300050514 nmdc:mga08x19_683850_c1 nmdc:mga08x19_683850_c1_21_587 184
59 3300005578 Ga0068854_100013444 Ga0068854_1000134443 185
60 3300021358 Ga0213873_10014361 Ga0213873_100143612 185
61 3300021384 Ga0213876_10002233 Ga0213876_100022338 185
62 3300025981 Ga0207640_10000966 Ga0207640_1000096610 185
63 3300026023 Ga0207677_10000075 Ga0207677_1000007527 185
64 3300039453 Ga0436362_0953380 Ga0436362_0953380_6844_7413 185
65 3300005334 Ga0068869_100032731 Ga0068869_1000327313 186
66 3300005539 Ga0068853_100449345 Ga0068853_1004493452 186
67 3300005543 Ga0070672_100107429 Ga0070672_1001074292 186
68 3300013308 Ga0157375_10000010 Ga0157375_10000010259 186
69 3300025940 Ga0207691_10140424 Ga0207691_101404241 186
70 3300025942 Ga0207689_10015904 Ga0207689_100159042 186
71 3300026041 Ga0207639_10441601 Ga0207639_104416011 186
72 3300005336 Ga0070680_100070934 Ga0070680_1000709342 187
73 3300025917 Ga0207660_10053623 Ga0207660_100536233 187
74 3300026118 Ga0207675_100218569 Ga0207675_1002185692 187
75 3300006914 Ga0075436_100009404 Ga0075436_1000094044 188
76 3300007076 Ga0075435_100007940 Ga0075435_1000079407 188
77 3300021384 Ga0213876_10157450 Ga0213876_101574502 188
78 3300035170 Ga0373943_0019950 Ga0373943_0019950_2012_2599 188
79 3300039437 Ga0436365_0877978 Ga0436365_0877978_1205_1786 188
80 3300044901 Ga0466960_0044897 Ga0466960_0044897_1084_1662 188
81 3300050513 nmdc:mga0rr50_5257_c1 nmdc:mga0rr50_5257_c1_1709_2287 188
82 3300009094 Ga0111539_10000030 Ga0111539_1000003040 190
83 3300050512 nmdc:mga0n895_390836_c1 nmdc:mga0n895_390836_c1_394_1020 190
84 3300005438 Ga0070701_10000534 Ga0070701_100005342 192
85 3300005615 Ga0070702_100049630 Ga0070702_1000496302 192
86 3300014745 Ga0157377_10000041 Ga0157377_1000004175 192
87 3300025935 Ga0207709_10155431 Ga0207709_101554312 192
88 3300025942 Ga0207689_10020967 Ga0207689_100209675 192
89 3300005354 Ga0070675_100000011 Ga0070675_10000001114 193
90 3300005343 Ga0070687_100060413 Ga0070687_1000604132 196
91 3300005406 Ga0070703_10000215 Ga0070703_1000021510 196
92 3300005440 Ga0070705_100000217 Ga0070705_1000002176 196
93 3300005467 Ga0070706_100000636 Ga0070706_10000063626 196
94 3300005471 Ga0070698_100135382 Ga0070698_1001353823 196
95 3300005518 Ga0070699_100000022 Ga0070699_100000022130 196
96 3300005545 Ga0070695_100113487 Ga0070695_1001134872 196
97 3300005546 Ga0070696_100000004 Ga0070696_10000000428 196
98 3300005546 Ga0070696_100027866 Ga0070696_1000278663 196
99 3300005547 Ga0070693_100279535 Ga0070693_1002795352 196
100 3300006852 Ga0075433_10115039 Ga0075433_101150392 196
101 3300025885 Ga0207653_10000230 Ga0207653_1000023016 196
102 3300025910 Ga0207684_10000463 Ga0207684_1000046318 196
103 3300050515 nmdc:mga0a205_128326_c1 nmdc:mga0a205_128326_c1_157_810 196
104 3300005331 Ga0070670_100303147 Ga0070670_1003031472 197
105 3300009147 Ga0114129_11194773 Ga0114129_111947732 197
106 3300025925 Ga0207650_10712892 Ga0207650_107128922 197
107 3300049593 Ga0501077_0442030 Ga0501077_0442030_202_804 197
108 3300050511 nmdc:mga08y16_22139_c1 nmdc:mga08y16_22139_c1_823_1425 197
109 3300005295 Ga0065707_10285790 Ga0065707_102857902 198
110 3300006844 Ga0075428_100124694 Ga0075428_1001246943 198
111 3300006844 Ga0075428_100148053 Ga0075428_1001480532 198
112 3300006847 Ga0075431_100377944 Ga0075431_1003779442 198
113 3300006871 Ga0075434_100087578 Ga0075434_1000875784 198
114 3300006871 Ga0075434_100564412 Ga0075434_1005644122 198
115 3300006880 Ga0075429_100264248 Ga0075429_1002642482 198
116 3300007076 Ga0075435_100352159 Ga0075435_1003521592 198
117 3300009094 Ga0111539_10353631 Ga0111539_103536312 198
118 3300009147 Ga0114129_10036520 Ga0114129_100365202 198
119 3300009147 Ga0114129_10037430 Ga0114129_100374305 198
120 3300009147 Ga0114129_10043898 Ga0114129_100438983 198
121 3300009147 Ga0114129_10093558 Ga0114129_100935584 198
122 3300009147 Ga0114129_10950391 Ga0114129_109503912 198
123 3300013297 Ga0157378_10307196 Ga0157378_103071962 198
124 3300035114 Ga0373939_0018048 Ga0373939_0018048_1269_1871 198
125 3300035691 Ga0373931_0011041 Ga0373931_0011041_2623_3225 198
126 3300047318 Ga0495636_0173193 Ga0495636_0173193_241_843 198
127 3300050507 nmdc:mga05p37_112294_c1 nmdc:mga05p37_112294_c1_2105_2755 198
128 3300050507 nmdc:mga05p37_26347_c1 nmdc:mga05p37_26347_c1_4054_4656 198
129 3300050507 nmdc:mga05p37_76797_c1 nmdc:mga05p37_76797_c1_219_821 198
130 3300050512 nmdc:mga0n895_232457_c1 nmdc:mga0n895_232457_c1_1167_1769 198
131 3300050512 nmdc:mga0n895_47689_c1 nmdc:mga0n895_47689_c1_2212_2814 198
132 3300050512 nmdc:mga0n895_642159_c1 nmdc:mga0n895_642159_c1_248_850 198
133 3300050513 nmdc:mga0rr50_440446_c1 nmdc:mga0rr50_440446_c1_201_803 198
134 3300050513 nmdc:mga0rr50_610680_c1 nmdc:mga0rr50_610680_c1_173_775 198
135 3300050515 nmdc:mga0a205_88707_c1 nmdc:mga0a205_88707_c1_414_1016 198
136 3300006844 Ga0075428_100032363 Ga0075428_1000323632 199
137 3300006871 Ga0075434_100065358 Ga0075434_1000653584 199
138 3300009094 Ga0111539_10557328 Ga0111539_105573282 199
139 3300009147 Ga0114129_10261730 Ga0114129_102617302 199
140 3300050511 nmdc:mga08y16_914593_c1 nmdc:mga08y16_914593_c1_47_685 199
141 3300050512 nmdc:mga0n895_240523_c1 nmdc:mga0n895_240523_c1_1001_1612 199
142 3300050513 nmdc:mga0rr50_18047_c1 nmdc:mga0rr50_18047_c1_3368_3979 199
143 3300003322 rootL2_10183500 rootL2_101835003 200
144 3300005546 Ga0070696_100041100 Ga0070696_1000411004 200
145 3300005549 Ga0070704_100326632 Ga0070704_1003266322 200
146 3300009147 Ga0114129_10688659 Ga0114129_106886592 200
147 3300009148 Ga0105243_10525757 Ga0105243_105257572 200
148 3300009174 Ga0105241_10662492 Ga0105241_106624922 200
149 3300025911 Ga0207654_10486165 Ga0207654_104861651 200
150 3300032005 Ga0307411_10253681 Ga0307411_102536811 200
151 3300049582 Ga0501048_0022757 Ga0501048_0022757_3316_3933 200
152 3300049705 Ga0501225_0075071 Ga0501225_0075071_316_933 200
153 3300005444 Ga0070694_100271394 Ga0070694_1002713942 201
154 3300006852 Ga0075433_10004151 Ga0075433_100041515 201
155 3300006914 Ga0075436_100000008 Ga0075436_100000008180 201
156 3300007076 Ga0075435_100117432 Ga0075435_1001174322 201
157 3300032002 Ga0307416_100248353 Ga0307416_1002483532 201
158 3300032004 Ga0307414_10325825 Ga0307414_103258252 201
159 3300044673 Ga0453683_0382115 Ga0453683_0382115_179_862 201
160 3300050507 nmdc:mga05p37_101035_c1 nmdc:mga05p37_101035_c1_2676_3302 201
161 3300050513 nmdc:mga0rr50_3070_c1 nmdc:mga0rr50_3070_c1_8117_8758 201
162 3300050514 nmdc:mga08x19_16_c1 nmdc:mga08x19_16_c1_183257_183898 201
163 3300050515 nmdc:mga0a205_44172_c1 nmdc:mga0a205_44172_c1_1471_2097 201
164 3300005445 Ga0070708_100000330 Ga0070708_10000033024 202
165 3300005467 Ga0070706_100026011 Ga0070706_1000260117 202
166 3300005468 Ga0070707_100030588 Ga0070707_1000305886 202
167 3300005471 Ga0070698_100107712 Ga0070698_1001077122 202
168 3300005518 Ga0070699_100000914 Ga0070699_10000091417 202
169 3300005536 Ga0070697_100043038 Ga0070697_1000430382 202
170 3300025910 Ga0207684_10098930 Ga0207684_100989302 202
171 3300025922 Ga0207646_10105115 Ga0207646_101051152 202
172 3300031548 Ga0307408_100369731 Ga0307408_1003697311 202
173 3300031911 Ga0307412_10293045 Ga0307412_102930452 202
174 3300032002 Ga0307416_100542029 Ga0307416_1005420292 202
175 3300005336 Ga0070680_100000103 Ga0070680_10000010320 203
176 3300005336 Ga0070680_100461537 Ga0070680_1004615372 203
177 3300005444 Ga0070694_100107589 Ga0070694_1001075892 203
178 3300005444 Ga0070694_100325493 Ga0070694_1003254932 203
179 3300005458 Ga0070681_10000095 Ga0070681_1000009524 203
180 3300005468 Ga0070707_100182747 Ga0070707_1001827472 203
181 3300005518 Ga0070699_100528333 Ga0070699_1005283332 203
182 3300005530 Ga0070679_100000661 Ga0070679_1000006613 203
183 3300005539 Ga0068853_100067943 Ga0068853_1000679432 203
184 3300005545 Ga0070695_100075276 Ga0070695_1000752762 203
185 3300005545 Ga0070695_100543517 Ga0070695_1005435172 203
186 3300005546 Ga0070696_100047659 Ga0070696_1000476594 203
187 3300005546 Ga0070696_100148311 Ga0070696_1001483112 203
188 3300005546 Ga0070696_100194624 Ga0070696_1001946242 203
189 3300005563 Ga0068855_100669647 Ga0068855_1006696472 203
190 3300005578 Ga0068854_100407033 Ga0068854_1004070332 203
191 3300005614 Ga0068856_100020838 Ga0068856_1000208385 203
192 3300005719 Ga0068861_100287600 Ga0068861_1002876002 203
193 3300006871 Ga0075434_100046901 Ga0075434_1000469013 203
194 3300006871 Ga0075434_100388108 Ga0075434_1003881082 203
195 3300006871 Ga0075434_101253337 Ga0075434_1012533372 203
196 3300007076 Ga0075435_100147139 Ga0075435_1001471392 203
197 3300007265 Ga0099794_10280581 Ga0099794_102805811 203
198 3300009147 Ga0114129_10001731 Ga0114129_1000173119 203
199 3300009148 Ga0105243_10294215 Ga0105243_102942152 203
200 3300009174 Ga0105241_10307722 Ga0105241_103077222 203
201 3300009176 Ga0105242_10817299 Ga0105242_108172991 203
202 3300009177 Ga0105248_10953247 Ga0105248_109532472 203
203 3300009545 Ga0105237_10293993 Ga0105237_102939932 203
204 3300009553 Ga0105249_10673166 Ga0105249_106731662 203
205 3300013100 Ga0157373_10013614 Ga0157373_100136147 203
206 3300013297 Ga0157378_10105397 Ga0157378_101053973 203
207 3300013307 Ga0157372_10047127 Ga0157372_100471271 203
208 3300025912 Ga0207707_10000503 Ga0207707_1000050315 203
209 3300025917 Ga0207660_10003576 Ga0207660_100035768 203
210 3300025921 Ga0207652_10000427 Ga0207652_1000042719 203
211 3300025961 Ga0207712_10440921 Ga0207712_104409212 203
212 3300025981 Ga0207640_10131358 Ga0207640_101313582 203
213 3300026041 Ga0207639_10085036 Ga0207639_100850363 203
214 3300026078 Ga0207702_10016026 Ga0207702_100160266 203
215 3300026088 Ga0207641_10506439 Ga0207641_105064392 203
216 3300031901 Ga0307406_10382654 Ga0307406_103826542 203
217 3300031995 Ga0307409_100905808 Ga0307409_1009058082 203
218 3300037312 Ga0395899_0328652 Ga0395899_0328652_30_662 203
219 3300037418 Ga0395900_1013675 Ga0395900_1013675_101_733 203
220 3300037471 Ga0395905_0923678 Ga0395905_0923678_83_715 203
221 3300045051 Ga0451576_0432190 Ga0451576_0432190_692_1327 203
222 3300048905 Ga0496102_0120132 Ga0496102_0120132_317_949 203
223 3300048907 Ga0496104_0125774 Ga0496104_0125774_1002_1634 203
224 3300048909 Ga0496106_0041499 Ga0496106_0041499_213_824 203
225 3300048909 Ga0496106_0071225 Ga0496106_0071225_681_1313 203
226 3300048910 Ga0496107_0043471 Ga0496107_0043471_221_832 203
227 3300048910 Ga0496107_0104582 Ga0496107_0104582_688_1320 203
228 3300048912 Ga0496109_0324279 Ga0496109_0324279_627_1259 203
229 3300050512 nmdc:mga0n895_136549_c1 nmdc:mga0n895_136549_c1_1757_2389 203
230 3300050512 nmdc:mga0n895_440990_c1 nmdc:mga0n895_440990_c1_195_818 203
231 3300050515 nmdc:mga0a205_31625_c1 nmdc:mga0a205_31625_c1_1802_2434 203
232 3300053084 Ga0495595_0211784 Ga0495595_0211784_182_802 203
233 3300005329 Ga0070683_100157360 Ga0070683_1001573603 204
234 3300005468 Ga0070707_100001342 Ga0070707_1000013426 204
235 3300025922 Ga0207646_10003379 Ga0207646_1000337919 204
236 3300025944 Ga0207661_10137082 Ga0207661_101370822 204
237 3300031456 Ga0307513_10000709 Ga0307513_1000070923 204
238 3300037466 Ga0395898_0846877 Ga0395898_0846877_56_832 204
239 3300037471 Ga0395905_0006255 Ga0395905_0006255_11147_11923 204
240 3300031911 Ga0307412_10248725 Ga0307412_102487252 205
241 3300031995 Ga0307409_100213326 Ga0307409_1002133262 205
242 3300049651 Ga0501201_012554 Ga0501201_012554_134_760 205
243 3300049652 Ga0501202_050007 Ga0501202_050007_220_849 205
244 3300049654 Ga0501207_059648 Ga0501207_059648_58_684 205
245 3300049661 Ga0501217_012933 Ga0501217_012933_326_952 205
246 3300049681 Ga0501251_022311 Ga0501251_022311_204_833 205
247 3300049704 Ga0501221_051791 Ga0501221_051791_191_817 205
248 3300049765 Ga0501268_017237 Ga0501268_017237_368_994 205
249 2162886011 MRS1b_contig_1271543 MRS1b_0718.00003040 206
250 3300005288 Ga0065714_10064450 Ga0065714_1006445040 206
251 3300005290 Ga0065712_10067784 Ga0065712_1006778419 206
252 3300005293 Ga0065715_10091307 Ga0065715_100913075 206
253 3300045051 Ga0451576_0584562 Ga0451576_0584562_97_732 206

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01502

PRA-CH

Phosphoribosyl-AMP cyclohydrolase

30

103

0.99

PF01503

PRA-PH

Phosphoribosyl-ATP pyrophosphohydrolase

147

234

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
1zps-assembly1.cif.gz_A crystal structure of methanobacterium thermoautotrophicum phosphoribosyl-amp cyclohydrolase hisi 0.9875 16 103
1yvw-assembly1.cif.gz_A crystal structure of phosphoribosyl-atp pyrophosphohydrolase from bacillus cereus. nesgc target bcr13. 0.948 112 200
3c90-assembly1.cif.gz_X the 1.25 a resolution structure of phosphoribosyl-atp pyrophosphohydrolase from mycobacterium tuberculosis, crystal form ii 0.9411 110 194
7aoi-assembly1.cif.gz_XF trypanosoma brucei mitochondrial ribosome large subunit assembly intermediate 0.9327 143 183
7t8u-assembly1.cif.gz_C structure of psmbeta2 nanotubes 0.9197 145 181
ID Description Score Start End Superfamily
1zpsA01 Alpha Beta;Roll;Ubiquitin-like (UB roll);Phosphoribosyl-AMP cyclohydrolase 0.9872 16 95 3.10.20.810
af_C6TGF5_46_140_3.10.20.810 Alpha Beta;Roll;Ubiquitin-like (UB roll);Phosphoribosyl-AMP cyclohydrolase 0.9767 6 95 3.10.20.810
af_Q86I95_32_170_1.20.1280.290 Mainly Alpha;Up-down Bundle;Monooxygenase; 0.9601 142 182 1.20.1280.290
af_Q2FUU3_358_449_1.10.287.1080 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;MazG-like 0.9586 112 201 1.10.287.1080
af_P06989_113_203_1.10.287.1080 Mainly Alpha;Orthogonal Bundle;Helix Hairpins;MazG-like 0.955 112 199 1.10.287.1080
ID Description Score Start End GO Terms
AF-A0A3M2FVE2-F1-model_v4 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) 0.9965 7 90 GO:0000105
GO:0004635
AF-Q2RTY3-F1-model_v4 Phosphoribosyl-AMP cyclohydrolase (PRA-CH) (EC 3.5.4.19) 0.9963 7 103 GO:0000105
GO:0000287
GO:0004635
GO:0005737
GO:0008270
AF-A0A7R8WX10-F1-model_v4 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) 0.9955 5 89 GO:0000105
GO:0004635
AF-A0A521X9E9-F1-model_v4 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) 0.9954 9 103 GO:0000105
GO:0004635
AF-A0A4Q4CI81-F1-model_v4 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) 0.9954 6 90 GO:0000105
GO:0004635

Feature Viewer

pLDDT pTM Quality
89.74 0.56 Medium
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Predicted Structure (AlphaFold2)

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