F361305

General Info

Members Datasets Scaffolds Average Seq Length
250 164 228 223

Family's Representative Sequence

Representative Sequence 3300005329|Ga0070683_100082280|Ga0070683_1000822801
Length 257
Sequence MSARHSYVFTLYQLFVVEKLANRPTPDGAIGEMSINMNETDKKKSKSSVRQRADAIKAFRCKNLIAVLEWPTDVKNIGTVIRNANALGVEKVYVVDPRHSLPDDWRELRDRGSVSKTSVSASKWTFVRRFNSTDECFDHLESKNFKSIVTSPHVKGKTSIFLHEGDYTVHSKLAVWFGSEATGISDRAVERSEMCISVPMFGMIESLNLGTSSGIVLYEVTKQRREYQSKYRKRDKRGKREKPLPTVIPPDNRRKLY

Samples

Sample ID Description Type Environment
1 2756170246 Mesorhizobium loti DSM 2626 Isolate Nodule
2 2844009547 Mesorhizobium sp. M7A.F.Ce.TU.012.03.2.1 Isolate Nodule
3 2869169390 Mesorhizobium sp. M7A.F.Ca.CA.001.10.2.1 Isolate Nodule
4 2869234852 Mesorhizobium sp. M7A.T.Ca.US.000.02.2.1 Isolate Nodule
5 2869256925 Mesorhizobium sp. M7A.F.Ca.MR.176.00.0.0 Isolate Nodule
6 2871451962 Mesorhizobium sp. M7A.F.Ca.US.006.01.1.1 Isolate Nodule
7 2874109183 Mesorhizobium sp. M7A.T.Ca.TU.009.02.1.1 Isolate Nodule
8 2885312484 Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2 Isolate Nodule
9 2885427238 Sphingomonas mesophila SYSUP0001 Isolate Stem Tuber
10 2903513507 Mesorhizobium sp. M7A.T.Ca.TU.009.01.1.2 Isolate Nodule
11 2924733363 Mesorhizobium sp. M7A.F.Ca.US.011.01.1.1 Isolate Nodule
12 2937861824 Mesorhizobium sp. M7A.F.Ca.CA.001.07.2.1 Isolate Nodule
13 2937980651 Mesorhizobium sp. M7A.F.Ca.CA.004.04.2.1 Isolate Nodule
14 2970510686 Mesorhizobium sp. M7A.F.Ca.MR.148.00.0.0 Isolate Nodule
15 2970532167 Mesorhizobium sp. M7A.F.Ca.CA.002.05.1.1 Isolate Nodule
16 2970619444 Mesorhizobium sp. M7A.F.Ca.ET.027.02.1.1 Isolate Nodule
17 2979764755 Mesorhizobium sp. M7A.F.Ca.CA.004.05.2.1 Isolate Nodule
18 2979772303 Mesorhizobium sp. M7A.F.Ca.CA.004.04.1.1 Isolate Nodule
19 3004232784 Mesorhizobium sp. M7A.T.Ca.US.000.02.1.1 Isolate Nodule
20 3004248173 Mesorhizobium sp. M7A.F.Ca.CA.004.06.1.1 Isolate Nodule
21 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
22 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
23 3300002070 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4 Metagenome Rhizosphere
24 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
25 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
26 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
27 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
28 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
29 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
30 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
31 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
32 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
33 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
34 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
35 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
36 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
37 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
38 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
39 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
40 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
41 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
42 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
43 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
44 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
45 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
46 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
47 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
48 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
49 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
50 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
51 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
52 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
53 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
54 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
55 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
56 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
57 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
58 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
59 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
60 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
61 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
62 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
63 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
64 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
65 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
66 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
67 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
68 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
69 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
70 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
71 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
72 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
73 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
74 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
75 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
76 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
77 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
78 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
79 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
80 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
81 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
82 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
83 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
84 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
85 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
86 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
87 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
88 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
89 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
102 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
105 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
107 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
110 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
112 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
113 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
114 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
115 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
116 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
117 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
118 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
119 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
120 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
121 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
122 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
123 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
124 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
125 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
126 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
127 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
128 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
129 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
130 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
131 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
132 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
133 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
134 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
135 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
136 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
137 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
138 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
139 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
140 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
141 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
142 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
143 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
144 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
145 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
146 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
147 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
149 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
150 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
151 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
152 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
153 3300049765 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_B_4_drought Metagenome Rhizosphere
154 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
155 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
156 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
157 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
158 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
159 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
160 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
161 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
162 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
163 8004312739 Mesorhizobium sp. M7A.F.Ca.MR.362.00.0.0 Isolate Nodule
164 8004727605 Mesorhizobium sp. M7A.F.Ca.CA.004.01.1.1 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 91.2
Metatranscriptomes 0
Isolates 8.8

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 9.6
Nodule 8.4
Rhizoplane 0.8
Rhizosphere 79.2
Stem 0
Stem Tuber 0.4
Unclassified 1.6

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24739J22299_10011006 3300001989 Bacteria 3346
2 JGI24739J22299_10027057 3300001989 Bacteria 2007
3 JGI24739J22299_10098392 3300001989 Unclassified 884
4 JGI24735J21928_10095247 3300002067 Bacteria 854
5 JGI24750J21931_1009521 3300002070 Bacteria 1252
6 Ga0055526_1009337 3300003771 Bacteria 4736
7 Ga0055536_1012448 3300003781 Bacteria 3156
8 Ga0055530_10004778 3300003791 Bacteria 6807
9 Ga0055531_10006916 3300003794 Bacteria 6317
10 Ga0055531_10018685 3300003794 Bacteria 2847
11 Ga0065712_10269757 3300005290 Bacteria 918
12 Ga0065707_10320330 3300005295 Bacteria 968
13 Ga0070658_10082315 3300005327 Bacteria 2645
14 Ga0070658_10206477 3300005327 Bacteria 1659
15 Ga0070658_10422239 3300005327 Bacteria 1147
16 Ga0070658_10843268 3300005327 Bacteria 796
17 Ga0070683_100082280 3300005329 Plasmid 3015
18 Ga0070690_100493374 3300005330 Unclassified 915
19 Ga0070670_100000081 3300005331 Bacteria 92043
20 Ga0070670_100095768 3300005331 Bacteria 2553
21 Ga0070670_100164407 3300005331 Bacteria 1924
22 Ga0068869_100016347 3300005334 Bacteria 4999
23 Ga0068869_100243821 3300005334 Bacteria 1433
24 Ga0070666_10045294 3300005335 Bacteria 2948
25 Ga0070666_10194854 3300005335 Bacteria 1425
26 Ga0070666_10292851 3300005335 Bacteria 1158
27 Ga0068868_100219279 3300005338 Bacteria 1592
28 Ga0070660_100076207 3300005339 Bacteria 2627
29 Ga0070660_100515436 3300005339 Bacteria 995
30 Ga0070661_100210921 3300005344 Bacteria 1487
31 Ga0070692_10005782 3300005345 Bacteria 5316
32 Ga0070668_100241068 3300005347 Bacteria 1498
33 Ga0070668_100347634 3300005347 Bacteria 1254
34 Ga0070668_100549527 3300005347 Bacteria 1005
35 Ga0070669_100251050 3300005353 Bacteria 1408
36 Ga0070671_100124926 3300005355 Bacteria 2166
37 Ga0070673_100542854 3300005364 Unclassified 1055
38 Ga0070667_100000774 3300005367 Bacteria 30276
39 Ga0070667_100048011 3300005367 Bacteria 3593
40 Ga0070663_100602812 3300005455 Bacteria 924
41 Ga0070662_100028052 3300005457 Bacteria 3915
42 Ga0068867_100016326 3300005459 Bacteria 5272
43 Ga0068853_100015271 3300005539 Bacteria 6311
44 Ga0068853_100066410 3300005539 Bacteria 3132
45 Ga0070665_100031109 3300005548 Bacteria 5372
46 Ga0070665_100537167 3300005548 Bacteria 1181
47 Ga0068855_100117131 3300005563 Bacteria 3053
48 Ga0068855_100367587 3300005563 Bacteria 1582
49 Ga0068855_100412827 3300005563 Bacteria 1478
50 Ga0068855_101013597 3300005563 Bacteria 872
51 Ga0068857_100059984 3300005577 Bacteria 3380
52 Ga0068854_100073321 3300005578 Bacteria 2509
53 Ga0068854_100260100 3300005578 Unclassified 1389
54 Ga0068854_100731542 3300005578 Bacteria 857
55 Ga0068852_100553186 3300005616 Bacteria 1151
56 Ga0068859_100315971 3300005617 Bacteria 1656
57 Ga0068864_100000016 3300005618 Bacteria 292454
58 Ga0068864_100036537 3300005618 Bacteria 4188
59 Ga0068864_100362279 3300005618 Bacteria 1370
60 Ga0068863_100000089 3300005841 Bacteria 101645
61 Ga0068863_100024096 3300005841 Bacteria 5806
62 Ga0068863_100166749 3300005841 Bacteria 2112
63 Ga0068860_100213312 3300005843 Bacteria 1873
64 Ga0068860_101002461 3300005843 Unclassified 853
65 Ga0068862_100000068 3300005844 Bacteria 123535
66 Ga0068862_100048875 3300005844 Bacteria 3612
67 Ga0068862_100063565 3300005844 Bacteria 3176
68 Ga0068862_100067539 3300005844 Bacteria 3082
69 Ga0068862_100205942 3300005844 Bacteria 1775
70 Ga0075367_10577387 3300006178 Unclassified 714
71 Ga0068865_100000078 3300006881 Bacteria 51512
72 Ga0097620_100315986 3300006931 Bacteria 1656
73 Ga0105251_10000678 3300009011 Bacteria 31364
74 Ga0105240_10096941 3300009093 Bacteria 3593
75 Ga0105240_10401358 3300009093 Bacteria 1544
76 Ga0105245_10145964 3300009098 Bacteria 2232
77 Ga0105243_10012307 3300009148 Bacteria 6469
78 Ga0105237_10205846 3300009545 Bacteria 1968
79 Ga0105237_10261771 3300009545 Bacteria 1732
80 Ga0105238_10119624 3300009551 Bacteria 2614
81 Ga0105238_10170154 3300009551 Unclassified 2155
82 Ga0105238_10408213 3300009551 Bacteria 1352
83 Ga0105238_10605556 3300009551 Bacteria 1104
84 Ga0105249_10048313 3300009553 Bacteria 3880
85 Ga0105249_10141652 3300009553 Bacteria 2306
86 Ga0105239_10136940 3300010375 Bacteria 2726
87 Ga0157371_10113084 3300013102 Bacteria 1927
88 Ga0157370_10746687 3300013104 Bacteria 892
89 Ga0157369_10100925 3300013105 Bacteria 3076
90 Ga0157369_10101107 3300013105 Unclassified 3073
91 Ga0157369_10215677 3300013105 Bacteria 2010
92 Ga0157369_10744417 3300013105 Unclassified 1009
93 Ga0157374_10036642 3300013296 Bacteria 4494
94 Ga0157374_10096464 3300013296 Bacteria 2828
95 Ga0157378_10032423 3300013297 Bacteria 4616
96 Ga0157378_10327029 3300013297 Unclassified 1491
97 Ga0163162_10093349 3300013306 Bacteria 3094
98 Ga0157372_10040316 3300013307 Bacteria 5157
99 Ga0157375_10963954 3300013308 Unclassified 994
100 Ga0163163_10012460 3300014325 Bacteria 7748
101 Ga0163163_10190899 3300014325 Bacteria 2097
102 Ga0157380_10527895 3300014326 Bacteria 1153
103 Ga0157379_10033645 3300014968 Bacteria 4571
104 Ga0157376_10033499 3300014969 Bacteria 4136
105 Ga0209676_1000252 3300025292 Bacteria 113425
106 Ga0209025_1005604 3300025294 Bacteria 10142
107 Ga0209564_1000783 3300025295 Bacteria 44071
108 Ga0209758_1024165 3300025297 Bacteria 2718
109 Ga0209050_1000169 3300025298 Bacteria 151269
110 Ga0209050_1017153 3300025298 Bacteria 2908
111 Ga0209256_1032412 3300025299 Bacteria 1417
112 Ga0209257_1000060 3300025304 Bacteria 372267
113 Ga0209257_1000287 3300025304 Bacteria 111624
114 Ga0207688_10022162 3300025901 Bacteria 3474
115 Ga0207680_10035761 3300025903 Bacteria 2855
116 Ga0207680_10075210 3300025903 Bacteria 2106
117 Ga0207680_10084771 3300025903 Unclassified 2000
118 Ga0207647_10007476 3300025904 Bacteria 7892
119 Ga0207705_10004453 3300025909 Bacteria 10585
120 Ga0207705_10108876 3300025909 Bacteria 2045
121 Ga0207705_10357525 3300025909 Bacteria 1126
122 Ga0207705_10618144 3300025909 Bacteria 842
123 Ga0207671_10336952 3300025914 Unclassified 1195
124 Ga0207657_10049960 3300025919 Bacteria 3641
125 Ga0207681_10182092 3300025923 Bacteria 1601
126 Ga0207694_10122684 3300025924 Bacteria 2076
127 Ga0207694_10227428 3300025924 Unclassified 1523
128 Ga0207694_10377230 3300025924 Bacteria 1177
129 Ga0207650_10000069 3300025925 Bacteria 138442
130 Ga0207650_10497260 3300025925 Bacteria 1019
131 Ga0207687_10054722 3300025927 Bacteria 2793
132 Ga0207644_10668600 3300025931 Unclassified 865
133 Ga0207706_10011076 3300025933 Bacteria 8219
134 Ga0207709_10004816 3300025935 Bacteria 7735
135 Ga0207704_10000090 3300025938 Bacteria 53065
136 Ga0207689_10000840 3300025942 Bacteria 29578
137 Ga0207689_10090761 3300025942 Bacteria 2510
138 Ga0207689_10441457 3300025942 Bacteria 1087
139 Ga0207661_10215594 3300025944 Unclassified 1694
140 Ga0207667_10169995 3300025949 Bacteria 2240
141 Ga0207667_10868376 3300025949 Bacteria 896
142 Ga0207651_10666666 3300025960 Bacteria 914
143 Ga0207640_10013692 3300025981 Bacteria 4654
144 Ga0207640_10023692 3300025981 Bacteria 3693
145 Ga0207640_10242726 3300025981 Unclassified 1393
146 Ga0207658_10000153 3300025986 Bacteria 72252
147 Ga0207658_10080268 3300025986 Bacteria 2498
148 Ga0207677_10121004 3300026023 Bacteria 1969
149 Ga0207639_10040319 3300026041 Bacteria 3484
150 Ga0207639_10061303 3300026041 Bacteria 2904
151 Ga0207678_10105101 3300026067 Bacteria 2409
152 Ga0207641_10000103 3300026088 Bacteria 122350
153 Ga0207641_10012412 3300026088 Bacteria 6985
154 Ga0207641_10211451 3300026088 Bacteria 1794
155 Ga0207648_10036594 3300026089 Bacteria 4324
156 Ga0207676_10000044 3300026095 Bacteria 161679
157 Ga0207676_10454970 3300026095 Bacteria 1207
158 Ga0207674_10010050 3300026116 Bacteria 10766
159 Ga0207675_100140540 3300026118 Bacteria 2293
160 Ga0207698_10700122 3300026142 Bacteria 1008
161 Ga0209813_10199925 3300027866 Unclassified 739
162 Ga0268266_10014081 3300028379 Bacteria 6885
163 Ga0268265_10000142 3300028380 Bacteria 91165
164 Ga0268265_10018306 3300028380 Bacteria 4852
165 Ga0268265_10070386 3300028380 Bacteria 2720
166 Ga0268265_10749753 3300028380 Bacteria 947
167 Ga0268264_10157095 3300028381 Bacteria 2045
168 Ga0268264_10518336 3300028381 Unclassified 1165
169 Ga0307408_100133171 3300031548 Bacteria 1941
170 Ga0307408_100169406 3300031548 Bacteria 1742
171 Ga0307408_100323005 3300031548 Bacteria 1301
172 Ga0307405_10040801 3300031731 Bacteria 2813
173 Ga0307405_10323772 3300031731 Bacteria 1178
174 Ga0307413_10045570 3300031824 Bacteria 2601
175 Ga0307413_10097461 3300031824 Bacteria 1933
176 Ga0307410_10232899 3300031852 Bacteria 1423
177 Ga0307410_10265022 3300031852 Bacteria 1341
178 Ga0307406_10180180 3300031901 Bacteria 1537
179 Ga0307407_10116637 3300031903 Bacteria 1685
180 Ga0307412_10093106 3300031911 Bacteria 2113
181 Ga0307412_10111576 3300031911 Bacteria 1953
182 Ga0307412_10342249 3300031911 Bacteria 1197
183 Ga0307409_100362536 3300031995 Bacteria 1371
184 Ga0307414_10111774 3300032004 Bacteria 2081
185 Ga0307414_10246031 3300032004 Bacteria 1483
186 Ga0307411_10095734 3300032005 Bacteria 2085
187 Ga0307411_10194571 3300032005 Bacteria 1551
188 Ga0307415_100170983 3300032126 Bacteria 1694
189 Ga0307415_100486559 3300032126 Bacteria 1075
190 Ga0395899_0094426 3300037312 Unclassified 2164
191 Ga0395899_0229974 3300037312 Bacteria 1281
192 Ga0395900_0173858 3300037418 Bacteria 2191
193 Ga0395900_0263461 3300037418 Bacteria 1720
194 Ga0395900_0441136 3300037418 Unclassified 1259
195 Ga0395900_0556242 3300037418 Bacteria 1091
196 Ga0395898_0103124 3300037466 Bacteria 2737
197 Ga0395898_0175787 3300037466 Bacteria 2046
198 Ga0395905_0162660 3300037471 Bacteria 2097
199 Ga0395901_0144956 3300038443 Bacteria 2496
200 Ga0395901_0258791 3300038443 Unclassified 1811
201 Ga0395901_0272609 3300038443 Bacteria 1759
202 Ga0395901_0443308 3300038443 Bacteria 1329
203 Ga0439455_0056953 3300042012 Bacteria 1030
204 Ga0466963_0009038 3300044694 Bacteria 5986
205 Ga0495663_0019016 3300046525 Bacteria 1960
206 Ga0496103_0047920 3300048906 Bacteria 2641
207 Ga0496114_1000300 3300048917 Bacteria 719
208 Ga0496117_0037162 3300048920 Bacteria 3632
209 Ga0496118_0000339 3300048921 Bacteria 80008
210 Ga0496121_0026017 3300048924 Bacteria 5533
211 Ga0496123_0063175 3300048926 Bacteria 2368
212 Ga0501033_0482024 3300049570 Bacteria 859
213 Ga0501034_0610723 3300049571 Bacteria 995
214 Ga0501047_0077749 3300049581 Bacteria 3191
215 Ga0501069_0190401 3300049585 Unclassified 1187
216 Ga0501070_0276882 3300049586 Bacteria 1369
217 Ga0501080_0284883 3300049742 Bacteria 1501
218 Ga0501080_0351442 3300049742 Bacteria 1331
219 Ga0501268_005544 3300049765 Bacteria 1820
220 Ga0501044_0187574 3300049823 Bacteria 2032
221 nmdc:mga06z11_478222_c1 3300050494 Unclassified 754
222 Ga0500646_0073680 3300053090 Bacteria 1029
223 Ga0500641_0003957 3300053096 Bacteria 5237
224 Ga0500556_0000757 3300053104 Bacteria 19241
225 Ga0500562_000187 3300053108 Bacteria 16767
226 Ga0500559_0173435 3300053136 Bacteria 1014
227 Ga0500568_0000153 3300053139 Bacteria 59952
228 Ga0500616_0046951 3300053153 Bacteria 2294

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300025942 Ga0207689_10090761 Ga0207689_100907612 209
2 iso_pu_bacteria 2885312484 2885314423 209
3 3300005347 Ga0070668_100241068 Ga0070668_1002410682 210
4 3300005844 Ga0068862_100048875 Ga0068862_1000488752 210
5 3300028380 Ga0268265_10018306 Ga0268265_100183064 210
6 3300005290 Ga0065712_10269757 Ga0065712_102697571 211
7 3300005295 Ga0065707_10320330 Ga0065707_103203301 211
8 3300005327 Ga0070658_10082315 Ga0070658_100823152 211
9 3300005334 Ga0068869_100243821 Ga0068869_1002438212 211
10 3300005455 Ga0070663_100602812 Ga0070663_1006028121 211
11 3300005577 Ga0068857_100059984 Ga0068857_1000599842 211
12 3300005618 Ga0068864_100362279 Ga0068864_1003622792 211
13 3300005844 Ga0068862_100063565 Ga0068862_1000635652 211
14 3300005844 Ga0068862_100067539 Ga0068862_1000675392 211
15 3300009553 Ga0105249_10048313 Ga0105249_100483134 211
16 3300013105 Ga0157369_10101107 Ga0157369_101011074 211
17 3300025942 Ga0207689_10441457 Ga0207689_104414572 211
18 3300025981 Ga0207640_10023692 Ga0207640_100236924 211
19 3300026067 Ga0207678_10105101 Ga0207678_101051011 211
20 3300026095 Ga0207676_10454970 Ga0207676_104549702 211
21 3300026116 Ga0207674_10010050 Ga0207674_100100509 211
22 3300028380 Ga0268265_10070386 Ga0268265_100703862 211
23 3300037418 Ga0395900_0173858 Ga0395900_0173858_115_810 211
24 3300037418 Ga0395900_0263461 Ga0395900_0263461_849_1619 211
25 3300037466 Ga0395898_0103124 Ga0395898_0103124_1894_2664 211
26 3300037471 Ga0395905_0162660 Ga0395905_0162660_145_915 211
27 3300038443 Ga0395901_0144956 Ga0395901_0144956_1361_2056 211
28 3300038443 Ga0395901_0272609 Ga0395901_0272609_891_1661 211
29 iso_pu_bacteria 2756170246 2756676967 211
30 iso_pu_bacteria 2844009547 2844014394 211
31 iso_pu_bacteria 2869169390 2869175427 211
32 iso_pu_bacteria 2869234852 2869240195 211
33 iso_pu_bacteria 2869256925 2869260969 211
34 iso_pu_bacteria 2871451962 2871451986 211
35 iso_pu_bacteria 2874109183 2874110403 211
36 iso_pu_bacteria 2903513507 2903516774 211
37 iso_pu_bacteria 2924733363 2924734727 211
38 iso_pu_bacteria 2937861824 2937862398 211
39 iso_pu_bacteria 2937980651 2937983557 211
40 iso_pu_bacteria 2970510686 2970517870 211
41 iso_pu_bacteria 2970532167 2970535670 211
42 iso_pu_bacteria 2970619444 2970624679 211
43 iso_pu_bacteria 2979764755 2979765785 211
44 iso_pu_bacteria 2979772303 2979776497 211
45 iso_pu_bacteria 3004232784 3004236916 211
46 iso_pu_bacteria 3004248173 3004251578 211
47 iso_pu_bacteria 8004312739 8004317475 211
48 iso_pu_bacteria 8004727605 8004728472 211
49 3300005327 Ga0070658_10843268 Ga0070658_108432681 212
50 3300005339 Ga0070660_100515436 Ga0070660_1005154361 212
51 3300025909 Ga0207705_10108876 Ga0207705_101088762 212
52 iso_pu_bacteria 2885427238 2885427794 212
53 3300002070 JGI24750J21931_1009521 JGI24750J21931_10095211 213
54 3300005335 Ga0070666_10045294 Ga0070666_100452942 213
55 3300005345 Ga0070692_10005782 Ga0070692_100057822 213
56 3300005347 Ga0070668_100549527 Ga0070668_1005495272 213
57 3300005548 Ga0070665_100537167 Ga0070665_1005371672 213
58 3300005841 Ga0068863_100166749 Ga0068863_1001667493 213
59 3300005844 Ga0068862_100205942 Ga0068862_1002059422 213
60 3300006178 Ga0075367_10577387 Ga0075367_105773871 213
61 3300009553 Ga0105249_10141652 Ga0105249_101416522 213
62 3300014326 Ga0157380_10527895 Ga0157380_105278952 213
63 3300025294 Ga0209025_1005604 Ga0209025_100560410 213
64 3300025299 Ga0209256_1032412 Ga0209256_10324121 213
65 3300025903 Ga0207680_10075210 Ga0207680_100752101 213
66 3300025909 Ga0207705_10357525 Ga0207705_103575252 213
67 3300025927 Ga0207687_10054722 Ga0207687_100547224 213
68 3300026088 Ga0207641_10211451 Ga0207641_102114512 213
69 3300027866 Ga0209813_10199925 Ga0209813_101999251 213
70 3300028380 Ga0268265_10749753 Ga0268265_107497531 213
71 3300031548 Ga0307408_100133171 Ga0307408_1001331712 213
72 3300031548 Ga0307408_100169406 Ga0307408_1001694062 213
73 3300031731 Ga0307405_10323772 Ga0307405_103237722 213
74 3300031824 Ga0307413_10045570 Ga0307413_100455702 213
75 3300031824 Ga0307413_10097461 Ga0307413_100974612 213
76 3300031852 Ga0307410_10232899 Ga0307410_102328993 213
77 3300031852 Ga0307410_10265022 Ga0307410_102650222 213
78 3300031901 Ga0307406_10180180 Ga0307406_101801802 213
79 3300031903 Ga0307407_10116637 Ga0307407_101166372 213
80 3300031911 Ga0307412_10111576 Ga0307412_101115762 213
81 3300031911 Ga0307412_10342249 Ga0307412_103422493 213
82 3300031995 Ga0307409_100362536 Ga0307409_1003625362 213
83 3300032004 Ga0307414_10111774 Ga0307414_101117742 213
84 3300032004 Ga0307414_10246031 Ga0307414_102460312 213
85 3300032005 Ga0307411_10095734 Ga0307411_100957342 213
86 3300032005 Ga0307411_10194571 Ga0307411_101945712 213
87 3300032126 Ga0307415_100170983 Ga0307415_1001709833 213
88 3300032126 Ga0307415_100486559 Ga0307415_1004865591 213
89 3300037312 Ga0395899_0094426 Ga0395899_0094426_484_1131 213
90 3300037418 Ga0395900_0441136 Ga0395900_0441136_87_734 213
91 3300037466 Ga0395898_0175787 Ga0395898_0175787_892_1539 213
92 3300038443 Ga0395901_0258791 Ga0395901_0258791_79_726 213
93 3300046525 Ga0495663_0019016 Ga0495663_0019016_307_951 213
94 3300049571 Ga0501034_0610723 Ga0501034_0610723_11_664 213
95 3300049581 Ga0501047_0077749 Ga0501047_0077749_490_1143 213
96 3300049742 Ga0501080_0284883 Ga0501080_0284883_568_1221 213
97 3300049765 Ga0501268_005544 Ga0501268_005544_929_1573 213
98 3300049823 Ga0501044_0187574 Ga0501044_0187574_1147_1800 213
99 3300050494 nmdc:mga06z11_478222_c1 nmdc:mga06z11_478222_c1_31_675 213
100 3300053096 Ga0500641_0003957 Ga0500641_0003957_191_853 213
101 3300053104 Ga0500556_0000757 Ga0500556_0000757_14197_14847 213
102 3300053108 Ga0500562_000187 Ga0500562_000187_7468_8118 213
103 3300053139 Ga0500568_0000153 Ga0500568_0000153_38566_39270 213
104 3300053153 Ga0500616_0046951 Ga0500616_0046951_951_1601 213
105 3300009093 Ga0105240_10401358 Ga0105240_104013582 214
106 3300009545 Ga0105237_10205846 Ga0105237_102058462 214
107 3300031548 Ga0307408_100323005 Ga0307408_1003230052 214
108 3300001989 JGI24739J22299_10011006 JGI24739J22299_100110063 215
109 3300001989 JGI24739J22299_10027057 JGI24739J22299_100270572 215
110 3300001989 JGI24739J22299_10098392 JGI24739J22299_100983921 215
111 3300002067 JGI24735J21928_10095247 JGI24735J21928_100952472 215
112 3300003771 Ga0055526_1009337 Ga0055526_10093374 215
113 3300003781 Ga0055536_1012448 Ga0055536_10124483 215
114 3300003791 Ga0055530_10004778 Ga0055530_100047785 215
115 3300003794 Ga0055531_10006916 Ga0055531_100069165 215
116 3300003794 Ga0055531_10018685 Ga0055531_100186853 215
117 3300005327 Ga0070658_10206477 Ga0070658_102064772 215
118 3300005327 Ga0070658_10422239 Ga0070658_104222391 215
119 3300005329 Ga0070683_100082280 Ga0070683_1000822801 215
120 3300005330 Ga0070690_100493374 Ga0070690_1004933741 215
121 3300005331 Ga0070670_100000081 Ga0070670_10000008178 215
122 3300005331 Ga0070670_100095768 Ga0070670_1000957682 215
123 3300005331 Ga0070670_100164407 Ga0070670_1001644071 215
124 3300005334 Ga0068869_100016347 Ga0068869_1000163473 215
125 3300005335 Ga0070666_10194854 Ga0070666_101948542 215
126 3300005335 Ga0070666_10292851 Ga0070666_102928512 215
127 3300005338 Ga0068868_100219279 Ga0068868_1002192792 215
128 3300005339 Ga0070660_100076207 Ga0070660_1000762072 215
129 3300005344 Ga0070661_100210921 Ga0070661_1002109212 215
130 3300005347 Ga0070668_100347634 Ga0070668_1003476341 215
131 3300005353 Ga0070669_100251050 Ga0070669_1002510502 215
132 3300005355 Ga0070671_100124926 Ga0070671_1001249262 215
133 3300005364 Ga0070673_100542854 Ga0070673_1005428541 215
134 3300005367 Ga0070667_100000774 Ga0070667_10000077415 215
135 3300005367 Ga0070667_100048011 Ga0070667_1000480112 215
136 3300005457 Ga0070662_100028052 Ga0070662_1000280522 215
137 3300005459 Ga0068867_100016326 Ga0068867_1000163264 215
138 3300005539 Ga0068853_100015271 Ga0068853_1000152712 215
139 3300005539 Ga0068853_100066410 Ga0068853_1000664103 215
140 3300005548 Ga0070665_100031109 Ga0070665_1000311094 215
141 3300005563 Ga0068855_100117131 Ga0068855_1001171313 215
142 3300005563 Ga0068855_100367587 Ga0068855_1003675871 215
143 3300005563 Ga0068855_100412827 Ga0068855_1004128272 215
144 3300005563 Ga0068855_101013597 Ga0068855_1010135972 215
145 3300005578 Ga0068854_100073321 Ga0068854_1000733213 215
146 3300005578 Ga0068854_100260100 Ga0068854_1002601002 215
147 3300005578 Ga0068854_100731542 Ga0068854_1007315422 215
148 3300005616 Ga0068852_100553186 Ga0068852_1005531862 215
149 3300005617 Ga0068859_100315971 Ga0068859_1003159712 215
150 3300005618 Ga0068864_100000016 Ga0068864_10000001682 215
151 3300005618 Ga0068864_100036537 Ga0068864_1000365375 215
152 3300005841 Ga0068863_100000089 Ga0068863_10000008961 215
153 3300005841 Ga0068863_100024096 Ga0068863_1000240966 215
154 3300005843 Ga0068860_100213312 Ga0068860_1002133122 215
155 3300005843 Ga0068860_101002461 Ga0068860_1010024611 215
156 3300005844 Ga0068862_100000068 Ga0068862_10000006883 215
157 3300006881 Ga0068865_100000078 Ga0068865_10000007850 215
158 3300006931 Ga0097620_100315986 Ga0097620_1003159863 215
159 3300009011 Ga0105251_10000678 Ga0105251_1000067813 215
160 3300009093 Ga0105240_10096941 Ga0105240_100969412 215
161 3300009098 Ga0105245_10145964 Ga0105245_101459641 215
162 3300009148 Ga0105243_10012307 Ga0105243_100123077 215
163 3300009545 Ga0105237_10261771 Ga0105237_102617712 215
164 3300009551 Ga0105238_10119624 Ga0105238_101196242 215
165 3300009551 Ga0105238_10170154 Ga0105238_101701543 215
166 3300009551 Ga0105238_10408213 Ga0105238_104082132 215
167 3300009551 Ga0105238_10605556 Ga0105238_106055561 215
168 3300010375 Ga0105239_10136940 Ga0105239_101369402 215
169 3300013102 Ga0157371_10113084 Ga0157371_101130842 215
170 3300013104 Ga0157370_10746687 Ga0157370_107466871 215
171 3300013105 Ga0157369_10100925 Ga0157369_101009254 215
172 3300013105 Ga0157369_10215677 Ga0157369_102156772 215
173 3300013105 Ga0157369_10744417 Ga0157369_107444172 215
174 3300013296 Ga0157374_10036642 Ga0157374_100366424 215
175 3300013296 Ga0157374_10096464 Ga0157374_100964642 215
176 3300013297 Ga0157378_10032423 Ga0157378_100324234 215
177 3300013297 Ga0157378_10327029 Ga0157378_103270292 215
178 3300013306 Ga0163162_10093349 Ga0163162_100933494 215
179 3300013307 Ga0157372_10040316 Ga0157372_100403164 215
180 3300013308 Ga0157375_10963954 Ga0157375_109639542 215
181 3300014325 Ga0163163_10012460 Ga0163163_100124602 215
182 3300014325 Ga0163163_10190899 Ga0163163_101908994 215
183 3300014968 Ga0157379_10033645 Ga0157379_100336452 215
184 3300014969 Ga0157376_10033499 Ga0157376_100334992 215
185 3300025292 Ga0209676_1000252 Ga0209676_10002527 215
186 3300025295 Ga0209564_1000783 Ga0209564_100078350 215
187 3300025297 Ga0209758_1024165 Ga0209758_10241652 215
188 3300025298 Ga0209050_1000169 Ga0209050_100016933 215
189 3300025298 Ga0209050_1017153 Ga0209050_10171531 215
190 3300025304 Ga0209257_1000060 Ga0209257_1000060333 215
191 3300025304 Ga0209257_1000287 Ga0209257_100028733 215
192 3300025901 Ga0207688_10022162 Ga0207688_100221622 215
193 3300025903 Ga0207680_10035761 Ga0207680_100357612 215
194 3300025903 Ga0207680_10084771 Ga0207680_100847713 215
195 3300025904 Ga0207647_10007476 Ga0207647_100074769 215
196 3300025909 Ga0207705_10004453 Ga0207705_100044538 215
197 3300025909 Ga0207705_10618144 Ga0207705_106181441 215
198 3300025914 Ga0207671_10336952 Ga0207671_103369522 215
199 3300025919 Ga0207657_10049960 Ga0207657_100499603 215
200 3300025923 Ga0207681_10182092 Ga0207681_101820922 215
201 3300025924 Ga0207694_10122684 Ga0207694_101226841 215
202 3300025924 Ga0207694_10227428 Ga0207694_102274281 215
203 3300025924 Ga0207694_10377230 Ga0207694_103772302 215
204 3300025925 Ga0207650_10000069 Ga0207650_1000006917 215
205 3300025925 Ga0207650_10497260 Ga0207650_104972602 215
206 3300025931 Ga0207644_10668600 Ga0207644_106686001 215
207 3300025933 Ga0207706_10011076 Ga0207706_100110762 215
208 3300025935 Ga0207709_10004816 Ga0207709_100048165 215
209 3300025938 Ga0207704_10000090 Ga0207704_1000009049 215
210 3300025942 Ga0207689_10000840 Ga0207689_1000084032 215
211 3300025944 Ga0207661_10215594 Ga0207661_102155942 215
212 3300025949 Ga0207667_10169995 Ga0207667_101699952 215
213 3300025949 Ga0207667_10868376 Ga0207667_108683761 215
214 3300025960 Ga0207651_10666666 Ga0207651_106666661 215
215 3300025981 Ga0207640_10013692 Ga0207640_100136924 215
216 3300025981 Ga0207640_10242726 Ga0207640_102427262 215
217 3300025986 Ga0207658_10000153 Ga0207658_1000015329 215
218 3300025986 Ga0207658_10080268 Ga0207658_100802681 215
219 3300026023 Ga0207677_10121004 Ga0207677_101210042 215
220 3300026041 Ga0207639_10040319 Ga0207639_100403193 215
221 3300026041 Ga0207639_10061303 Ga0207639_100613032 215
222 3300026088 Ga0207641_10000103 Ga0207641_1000010375 215
223 3300026088 Ga0207641_10012412 Ga0207641_100124126 215
224 3300026089 Ga0207648_10036594 Ga0207648_100365943 215
225 3300026095 Ga0207676_10000044 Ga0207676_1000004475 215
226 3300026118 Ga0207675_100140540 Ga0207675_1001405402 215
227 3300026142 Ga0207698_10700122 Ga0207698_107001222 215
228 3300028379 Ga0268266_10014081 Ga0268266_100140819 215
229 3300028380 Ga0268265_10000142 Ga0268265_1000014275 215
230 3300028381 Ga0268264_10157095 Ga0268264_101570951 215
231 3300028381 Ga0268264_10518336 Ga0268264_105183362 215
232 3300031731 Ga0307405_10040801 Ga0307405_100408012 215
233 3300031911 Ga0307412_10093106 Ga0307412_100931062 215
234 3300037312 Ga0395899_0229974 Ga0395899_0229974_612_1262 215
235 3300037418 Ga0395900_0556242 Ga0395900_0556242_261_938 215
236 3300038443 Ga0395901_0443308 Ga0395901_0443308_217_867 215
237 3300042012 Ga0439455_0056953 Ga0439455_0056953_63_713 215
238 3300044694 Ga0466963_0009038 Ga0466963_0009038_5118_5768 215
239 3300048906 Ga0496103_0047920 Ga0496103_0047920_1976_2626 215
240 3300048917 Ga0496114_1000300 Ga0496114_1000300_11_667 215
241 3300048920 Ga0496117_0037162 Ga0496117_0037162_1794_2444 215
242 3300048921 Ga0496118_0000339 Ga0496118_0000339_52628_53278 215
243 3300048924 Ga0496121_0026017 Ga0496121_0026017_2701_3351 215
244 3300048926 Ga0496123_0063175 Ga0496123_0063175_1429_2079 215
245 3300049570 Ga0501033_0482024 Ga0501033_0482024_172_849 215
246 3300049585 Ga0501069_0190401 Ga0501069_0190401_187_903 215
247 3300049586 Ga0501070_0276882 Ga0501070_0276882_354_1070 215
248 3300049742 Ga0501080_0351442 Ga0501080_0351442_128_844 215
249 3300053090 Ga0500646_0073680 Ga0500646_0073680_93_791 215
250 3300053136 Ga0500559_0173435 Ga0500559_0173435_79_729 215

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00588

SpoU_methylase

SpoU rRNA Methylase family

63

218

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
4x3m-assembly1.cif.gz_B crystal structure of ttha0275 from thermus thermophilus (hb8) in complex with adenosine in space group p212121 0.8906 27 188
5gra-assembly1.cif.gz_B crystal structure of trmj from z. mobilis zm4 0.8451 29 187
1gz0-assembly4.cif.gz_E 23s ribosomal rna g2251 2'o-methyltransferase rlmb 0.8439 18 187
2ha8-assembly1.cif.gz_B methyltransferase domain of human tar (hiv-1) rna binding protein 1 0.8421 28 187
5co4-assembly1.cif.gz_A structural insights into the 2-oh methylation of c/u34 on trna 0.8412 28 187
ID Description Score Start End Superfamily
af_I1KWB6_105_310_3.40.1280.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.8741 14 190 3.40.1280.10
af_A0A0G2JYA7_1418_1569_3.40.1280.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.8564 29 187 3.40.1280.10
5l0zB02 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.8519 23 186 3.40.1280.10
af_Q22484_1055_1224_3.40.1280.10 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.8427 27 189 3.40.1280.10
4x3lA02 Alpha Beta;3-Layer(aba) Sandwich;Alpha/beta knot;SPOUT methyltransferase, trefoil knot domain 0.8426 28 188 3.40.1280.10
ID Description Score Start End GO Terms
AF-A0A315ZDV7-F1-model_v4 tRNA (Guanosine-2'-O-)-methyltransferase 0.935 22 192 GO:0000049
GO:0002938
GO:0008173
AF-A0A251ZTP2-F1-model_v4 rRNA methyltransferase 0.9347 7 215 GO:0000049
GO:0002938
GO:0008173
AF-A0A4Q3S504-F1-model_v4 TrmH family RNA methyltransferase 0.9339 4 212 GO:0000049
GO:0002938
GO:0008173
AF-A0A0B7J4J5-F1-model_v4 tRNA (Guanosine(18)-2'-O)-methyltransferase (EC 2.1.1.34) 0.9308 82 190 GO:0000049
GO:0002938
GO:0141100
AF-A0A1F5PEW5-F1-model_v4 tRNA/rRNA methyltransferase SpoU type domain-containing protein 0.9158 24 190 GO:0000049
GO:0002938
GO:0008173

Feature Viewer

pLDDT pTM Quality
81.63 0.82 High
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Predicted Structure (AlphaFold2)

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