F360963

General Info

Members Datasets Scaffolds Average Seq Length
249 166 234 455

Family's Representative Sequence

Representative Sequence 3300044765|Ga0466970_0000607|Ga0466970_0000607_9748_11259
Length 503
Sequence LPVKYSCCEHFPYSVNAAQALAAFAQKLARNLLGSANCGNFAVSNKPSLASYLPPALLETLAHNKGFDRAAFEAVHASGEQVTSVRYNPAKLSLLKGDEPFPSTTQVPWCPDGRYLPQRPSFTLDPLLHAGLYYVQEASSMFLWHMLQYTTNGRAGQRVLDLCAAPGGKTTLLSAYFTNSLLVSNEVIKPRSAVLVENMTKWGTGEAVVTSNDPKDFQPLAGYFDVIVVDAPCSGSGLFRRDPDAVQEWSPENVTLCSQRQQRILADIMPALKQGGVLIYSTCSYSAEEDEQIADWLMQSFELEHIPVPLPAQWQVVPTTSPLKGAEGYRFYPDKIRGEGLYICAFRRKDGSVFSNRKSQLPAAPKKETVLAREWIHPAAAPYFFMQKENLLAIPEIWQADIALLQRHLYLRKAGVNIGAIKGNDLVPSHELALSLLLEPGLQKAALGLDEALLYLRKKEFAPGTGGKGWALATYRDIPLGWMKLLPNRVNNYYPTEWRIIKD

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2738541278 Niastella sp. CF465 Isolate Unclassified
3 2818991442 Chitinophaga pinensis 1204 Isolate Unclassified
4 2818991444 Filimonas endophytica 3197 Isolate Unclassified
5 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
6 2821136567 Chitinophaga sancti 1232 Isolate Unclassified
7 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
8 2881955468 Edaphocola flava HME-24 Isolate Rhizosphere
9 2883068021 Chitinophaga rhizosphaerae T16R-86 Isolate Rhizosphere
10 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
11 2896085136 Chitinophaga alhagiae T22 Isolate Unclassified
12 2904467357 Chitinophaga sancti 3198 Isolate Unclassified
13 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
14 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
15 2945977869 Chitinophaga sp. W2I13 Isolate Rhizosphere
16 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
17 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
18 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
19 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
20 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
21 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
22 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
23 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
24 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
25 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
26 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
27 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
28 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
29 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
30 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
31 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
32 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
33 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
34 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
35 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
36 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
37 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
38 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
39 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
40 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
41 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
42 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
43 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
44 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
45 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
46 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
47 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
48 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
49 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
50 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
51 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
52 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
53 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
54 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
55 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
56 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
57 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
58 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
59 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
60 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
61 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
62 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
63 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
64 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
65 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
66 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
67 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
68 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
69 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
70 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
71 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
72 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
73 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
74 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
75 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
76 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
77 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
78 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
79 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
80 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
81 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
82 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
88 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
89 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
90 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
91 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
95 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
96 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
97 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
98 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
99 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
100 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
101 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
102 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
103 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
104 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
105 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
106 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
107 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
108 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
109 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
110 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
111 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
112 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
113 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
114 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
115 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
116 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
117 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
118 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
119 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
120 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
121 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
122 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
123 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
124 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
125 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
126 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
127 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
128 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
129 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
130 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
131 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
132 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
133 3300046648 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 rhizosphere Metagenome Rhizosphere
134 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
135 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
136 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
137 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
138 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
139 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
140 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
141 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
142 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
143 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
144 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
145 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
146 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
147 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
148 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
149 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
150 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
151 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
152 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
153 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
154 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
155 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
156 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
157 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
158 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
159 3300053098 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere Metagenome Endosphere
160 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
161 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
162 3300053147 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co3_11_46 endosphere Metagenome Endosphere
163 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
164 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
165 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
166 3300053730 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.98
Metatranscriptomes 0
Isolates 6.02

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.23
Nodule 0
Rhizoplane 1.2
Rhizosphere 80.32
Stem 0
Stem Tuber 0
Unclassified 11.24

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1790489 2162886007 Bacteria 77625
2 JGI25406J46586_10001143 3300003203 Bacteria 12460
3 rootH2_10013043 3300003320 Bacteria 11885
4 rootH2_10015349 3300003320 Bacteria 24566
5 rootH2_10172890 3300003320 Bacteria 7005
6 rootL2_10048871 3300003322 Bacteria 1744
7 rootH1_10002797 3300003323 Bacteria 12596
8 rootH1_10044844 3300003323 Bacteria 3113
9 JGI25160J50197_1001926 3300003354 Bacteria 9925
10 JGI25160J50197_1004705 3300003354 Bacteria 5845
11 Ga0065704_10070136 3300005289 Bacteria 560402
12 Ga0065704_10080603 3300005289 Bacteria 3916
13 Ga0065712_10003124 3300005290 Bacteria 4116
14 Ga0065712_10003179 3300005290 Bacteria 3904
15 Ga0065707_10128623 3300005295 Bacteria 1962
16 Ga0070658_10000290 3300005327 Bacteria 43973
17 Ga0070658_10024137 3300005327 Bacteria 4879
18 Ga0070683_100009554 3300005329 Bacteria 8302
19 Ga0070683_100023084 3300005329 Bacteria 5563
20 Ga0070670_100207058 3300005331 Bacteria 1705
21 Ga0068869_100034791 3300005334 Bacteria 3566
22 Ga0068869_100107352 3300005334 Bacteria 2120
23 Ga0070666_10025995 3300005335 Bacteria 3821
24 Ga0070666_10074517 3300005335 Bacteria 2313
25 Ga0070660_100003720 3300005339 Bacteria 10539
26 Ga0070689_100141820 3300005340 Bacteria 1933
27 Ga0070661_100011643 3300005344 Bacteria 6132
28 Ga0070675_100020772 3300005354 Bacteria 5240
29 Ga0070671_100003186 3300005355 Bacteria 12788
30 Ga0070671_100144072 3300005355 Bacteria 2011
31 Ga0070667_100022631 3300005367 Bacteria 5212
32 Ga0070662_100000901 3300005457 Bacteria 18158
33 Ga0070681_10102700 3300005458 Bacteria 2804
34 Ga0068867_100038877 3300005459 Bacteria 3466
35 Ga0070698_100028674 3300005471 Bacteria 5779
36 Ga0070679_100168264 3300005530 Bacteria 2165
37 Ga0068853_100036179 3300005539 Bacteria 4196
38 Ga0068853_100061816 3300005539 Bacteria 3240
39 Ga0068853_100069585 3300005539 Bacteria 3062
40 Ga0068855_100015461 3300005563 Bacteria 9188
41 Ga0068855_100020450 3300005563 Bacteria 7937
42 Ga0068855_100060558 3300005563 Unclassified 4427
43 Ga0068855_100060696 3300005563 Bacteria 4421
44 Ga0070664_100036277 3300005564 Bacteria 4141
45 Ga0068857_100086377 3300005577 Bacteria 2805
46 Ga0068857_100135209 3300005577 Bacteria 2226
47 Ga0068857_100180864 3300005577 Bacteria 1919
48 Ga0068856_100004693 3300005614 Bacteria 13566
49 Ga0068856_100032804 3300005614 Bacteria 5086
50 Ga0068859_100032428 3300005617 Bacteria 5248
51 Ga0068864_100078754 3300005618 Bacteria 2885
52 Ga0068851_10077057 3300005834 Bacteria 1735
53 Ga0068863_100014057 3300005841 Bacteria 7713
54 Ga0068858_100055614 3300005842 Unclassified 3658
55 Ga0068858_100089429 3300005842 Bacteria 2865
56 Ga0068860_100163580 3300005843 Bacteria 2147
57 Ga0068862_100154253 3300005844 Viruses 2046
58 Ga0081539_10001463 3300005985 Bacteria 40106
59 Ga0097621_100000538 3300006237 Bacteria 26658
60 Ga0097621_100004509 3300006237 Bacteria 9708
61 Ga0097621_100011255 3300006237 Bacteria 6584
62 Ga0097621_100016427 3300006237 Bacteria 5595
63 Ga0097621_100137807 3300006237 Bacteria 2083
64 Ga0068871_100000452 3300006358 Bacteria 28201
65 Ga0068871_100002202 3300006358 Bacteria 13246
66 Ga0068871_100048085 3300006358 Bacteria 3442
67 Ga0068871_100084494 3300006358 Unclassified 2634
68 Ga0068871_100098650 3300006358 Bacteria 2444
69 Ga0075428_100232060 3300006844 Bacteria 1991
70 Ga0068865_100176347 3300006881 Bacteria 1643
71 Ga0097620_100032429 3300006931 Bacteria 5248
72 Ga0105240_10000486 3300009093 Bacteria 73492
73 Ga0105240_10001336 3300009093 Bacteria 42397
74 Ga0105240_10168964 3300009093 Bacteria 2592
75 Ga0105240_10215381 3300009093 Bacteria 2241
76 Ga0105247_10001323 3300009101 Bacteria 18089
77 Ga0114129_10001943 3300009147 Bacteria 28301
78 Ga0105242_10050586 3300009176 Bacteria 3383
79 Ga0105248_10090426 3300009177 Bacteria 3447
80 Ga0105237_10000340 3300009545 Bacteria 65768
81 Ga0105237_10006210 3300009545 Bacteria 13323
82 Ga0105237_10013599 3300009545 Bacteria 8526
83 Ga0105239_10002914 3300010375 Bacteria 21377
84 Ga0105239_10007221 3300010375 Bacteria 12762
85 Ga0157373_10002234 3300013100 Bacteria 14659
86 Ga0157371_10012233 3300013102 Bacteria 6570
87 Ga0157370_10034508 3300013104 Bacteria 4925
88 Ga0157370_10048122 3300013104 Bacteria 4086
89 Ga0157369_10004718 3300013105 Bacteria 16027
90 Ga0157374_10014844 3300013296 Bacteria 6825
91 Ga0157374_10019261 3300013296 Bacteria 6037
92 Ga0157374_10034411 3300013296 Unclassified 4627
93 Ga0157374_10072263 3300013296 Unclassified 3255
94 Ga0157378_10005689 3300013297 Bacteria 10910
95 Ga0157378_10021894 3300013297 Bacteria 5621
96 Ga0157378_10096769 3300013297 Bacteria 2690
97 Ga0163162_10001458 3300013306 Bacteria 21978
98 Ga0163162_10012520 3300013306 Bacteria 8288
99 Ga0163162_10097863 3300013306 Bacteria 3023
100 Ga0163162_10139223 3300013306 Bacteria 2539
101 Ga0163162_10183385 3300013306 Bacteria 2219
102 Ga0157372_10009782 3300013307 Bacteria 10197
103 Ga0157372_10024509 3300013307 Bacteria 6555
104 Ga0157372_10026707 3300013307 Bacteria 6284
105 Ga0157372_10095420 3300013307 Bacteria 3388
106 Ga0157372_10241828 3300013307 Bacteria 2094
107 Ga0157375_10000813 3300013308 Bacteria 27357
108 Ga0157375_10116957 3300013308 Bacteria 2771
109 Ga0157377_10019730 3300014745 Bacteria 3525
110 Ga0157379_10300936 3300014968 Bacteria 1462
111 Ga0157376_10003431 3300014969 Bacteria 10909
112 Ga0157376_10032458 3300014969 Bacteria 4193
113 Ga0157376_10091495 3300014969 Bacteria 2635
114 Ga0182005_1000023 3300015265 Bacteria 246328
115 Ga0163161_10009151 3300017792 Bacteria 6845
116 Ga0209646_1005293 3300025246 Bacteria 2266
117 Ga0207426_1000009 3300025302 Bacteria 797229
118 Ga0207426_1000051 3300025302 Bacteria 391700
119 Ga0207426_1007105 3300025302 Bacteria 4735
120 Ga0207656_10002677 3300025321 Bacteria 6038
121 Ga0207710_10001137 3300025900 Bacteria 13555
122 Ga0207680_10011388 3300025903 Bacteria 4494
123 Ga0207680_10059407 3300025903 Unclassified 2323
124 Ga0207647_10000057 3300025904 Bacteria 85211
125 Ga0207647_10100340 3300025904 Bacteria 1718
126 Ga0207695_10109495 3300025913 Bacteria 2744
127 Ga0207671_10005991 3300025914 Bacteria 11000
128 Ga0207671_10011539 3300025914 Bacteria 7178
129 Ga0207671_10029927 3300025914 Bacteria 4063
130 Ga0207660_10128725 3300025917 Bacteria 1925
131 Ga0207662_10078606 3300025918 Bacteria 2008
132 Ga0207657_10011658 3300025919 Bacteria 8713
133 Ga0207657_10089261 3300025919 Bacteria 2575
134 Ga0207649_10029647 3300025920 Bacteria 3233
135 Ga0207652_10034279 3300025921 Bacteria 4277
136 Ga0207650_10047045 3300025925 Bacteria 3178
137 Ga0207644_10016609 3300025931 Bacteria 4954
138 Ga0207706_10031256 3300025933 Bacteria 4744
139 Ga0207686_10007340 3300025934 Bacteria 5931
140 Ga0207691_10134447 3300025940 Bacteria 2183
141 Ga0207679_10032244 3300025945 Bacteria 3675
142 Ga0207667_10028713 3300025949 Bacteria 6039
143 Ga0207667_10045074 3300025949 Unclassified 4671
144 Ga0207667_10049845 3300025949 Bacteria 4420
145 Ga0207668_10152840 3300025972 Bacteria 1789
146 Ga0207640_10132367 3300025981 Bacteria 1805
147 Ga0207677_10107458 3300026023 Bacteria 2070
148 Ga0207639_10013469 3300026041 Bacteria 5725
149 Ga0207639_10170449 3300026041 Unclassified 1843
150 Ga0207639_10195009 3300026041 Bacteria 1733
151 Ga0207702_10046759 3300026078 Bacteria 3644
152 Ga0207648_10038533 3300026089 Bacteria 4205
153 Ga0207648_10149772 3300026089 Bacteria 2058
154 Ga0207676_10088983 3300026095 Bacteria 2529
155 Ga0207674_10097396 3300026116 Unclassified 2925
156 Ga0207675_100297812 3300026118 Bacteria 1570
157 Ga0207683_10004259 3300026121 Bacteria 12349
158 Ga0268265_10133267 3300028380 Bacteria 2069
159 Ga0307515_10000010 3300028794 Bacteria 651586
160 Ga0307515_10000469 3300028794 Bacteria 96345
161 Ga0307511_10000455 3300030521 Bacteria 44094
162 Ga0265327_10000239 3300031251 Bacteria 109804
163 Ga0265327_10000432 3300031251 Bacteria 75935
164 Ga0265327_10016035 3300031251 Bacteria 4791
165 Ga0307513_10061174 3300031456 Bacteria 3988
166 Ga0307509_10054248 3300031507 Bacteria 4269
167 Ga0307509_10197122 3300031507 Bacteria 1856
168 Ga0307408_100001545 3300031548 Bacteria 17060
169 Ga0307408_100003413 3300031548 Bacteria 10896
170 Ga0307408_100017584 3300031548 Bacteria 4786
171 Ga0307508_10003081 3300031616 Bacteria 17141
172 Ga0307405_10019489 3300031731 Bacteria 3770
173 Ga0307412_10002839 3300031911 Bacteria 9604
174 Ga0307414_10010519 3300032004 Bacteria 5375
175 Ga0395900_0038965 3300037418 Bacteria 4899
176 Ga0395900_0096540 3300037418 Bacteria 3037
177 Ga0436365_0681528 3300039437 Bacteria 8492
178 Ga0439436_0002920 3300041404 Bacteria 5184
179 Ga0439449_0030919 3300042007 Bacteria 1996
180 Ga0439457_000716 3300042014 Bacteria 9828
181 Ga0439457_011902 3300042014 Bacteria 1966
182 Ga0451577_0003143 3300042876 Bacteria 18605
183 Ga0466969_0001938 3300044656 Bacteria 11055
184 Ga0466972_0000003 3300044658 Bacteria 391452
185 Ga0466972_0000013 3300044658 Bacteria 229345
186 Ga0466972_0008535 3300044658 Bacteria 5143
187 Ga0466966_0001169 3300044684 Bacteria 16875
188 Ga0466970_0000607 3300044765 Bacteria 17574
189 Ga0466957_0000305 3300044842 Bacteria 24128
190 Ga0466957_0141443 3300044842 Bacteria 1550
191 Ga0466959_0001202 3300045049 Bacteria 15639
192 Ga0466959_0004333 3300045049 Bacteria 9482
193 Ga0495611_0000883 3300046648 Bacteria 16291
194 Ga0495636_0000053 3300047318 Bacteria 50598
195 Ga0496100_0022262 3300048903 Bacteria 3834
196 Ga0496110_0223668 3300048913 Bacteria 1712
197 Ga0496114_0010269 3300048917 Bacteria 7451
198 Ga0496121_0000343 3300048924 Bacteria 96972
199 Ga0496124_0073889 3300048927 Bacteria 2820
200 Ga0501032_0036935 3300049569 Bacteria 3333
201 Ga0501034_0015752 3300049571 Bacteria 7763
202 Ga0501034_0022539 3300049571 Bacteria 6417
203 Ga0501034_0039084 3300049571 Bacteria 4806
204 Ga0501037_0083075 3300049573 Bacteria 2320
205 Ga0501038_0010077 3300049574 Bacteria 8653
206 Ga0501043_0066559 3300049579 Bacteria 2830
207 Ga0501046_0004347 3300049580 Bacteria 12900
208 Ga0501047_0018765 3300049581 Bacteria 6633
209 Ga0501047_0055464 3300049581 Bacteria 3832
210 Ga0501047_0142023 3300049581 Bacteria 2279
211 Ga0501048_0046950 3300049582 Bacteria 3083
212 Ga0501070_0078753 3300049586 Bacteria 2727
213 Ga0501073_0060344 3300049589 Bacteria 2646
214 Ga0501074_0000815 3300049590 Bacteria 19756
215 Ga0501225_0004989 3300049705 Bacteria 3922
216 Ga0501083_0022895 3300049744 Bacteria 4336
217 Ga0501044_0029191 3300049823 Bacteria 5817
218 Ga0501044_0041725 3300049823 Bacteria 4777
219 Ga0501044_0055651 3300049823 Bacteria 4062
220 nmdc:mga05p37_1237_c1 3300050507 Bacteria 29632
221 nmdc:mga09592_121321_c1 3300050508 Bacteria 2246
222 Ga0500578_0000155 3300053086 Bacteria 80380
223 Ga0500646_0004456 3300053090 Unclassified 3549
224 Ga0500583_0000043 3300053092 Bacteria 81313
225 Ga0500583_0001101 3300053092 Bacteria 7708
226 Ga0500650_0050982 3300053098 Bacteria 1922
227 Ga0500562_000077 3300053108 Bacteria 45189
228 Ga0500568_0001558 3300053139 Bacteria 14518
229 Ga0500589_032283 3300053147 Bacteria 2441
230 Ga0500604_0016162 3300053151 Bacteria 2053
231 Ga0500616_0081989 3300053153 Unclassified 1619
232 Ga0500622_0003322 3300053156 Bacteria 10864
233 Ga0500622_0052623 3300053156 Bacteria 2093
234 Ga0500645_007224 3300053730 Bacteria 3888

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300031548 Ga0307408_100001545 Ga0307408_10000154513 356
2 3300025917 Ga0207660_10128725 Ga0207660_101287251 364
3 3300005335 Ga0070666_10025995 Ga0070666_100259953 382
4 3300005367 Ga0070667_100022631 Ga0070667_1000226315 382
5 3300005459 Ga0068867_100038877 Ga0068867_1000388772 382
6 3300005842 Ga0068858_100055614 Ga0068858_1000556143 382
7 3300006358 Ga0068871_100000452 Ga0068871_10000045227 382
8 3300025903 Ga0207680_10059407 Ga0207680_100594072 382
9 3300025931 Ga0207644_10016609 Ga0207644_100166092 382
10 3300005355 Ga0070671_100003186 Ga0070671_1000031862 384
11 3300049823 Ga0501044_0055651 Ga0501044_0055651_68_1453 405
12 3300003322 rootL2_10048871 rootL2_100488712 410
13 3300053156 Ga0500622_0052623 Ga0500622_0052623_13_1335 411
14 3300009101 Ga0105247_10001323 Ga0105247_1000132316 412
15 3300025900 Ga0207710_10001137 Ga0207710_1000113713 412
16 3300025914 Ga0207671_10005991 Ga0207671_1000599110 415
17 iso_pu_bacteria 2896085136 2896087912 416
18 3300026089 Ga0207648_10038533 Ga0207648_100385334 417
19 iso_pu_bacteria 2821136567 2821140074 417
20 iso_pu_bacteria 2904467357 2904472195 417
21 3300039437 Ga0436365_0681528 Ga0436365_0681528_5170_6546 419
22 3300013100 Ga0157373_10002234 Ga0157373_100022345 420
23 3300013104 Ga0157370_10048122 Ga0157370_100481225 420
24 3300013105 Ga0157369_10004718 Ga0157369_100047188 420
25 3300013296 Ga0157374_10019261 Ga0157374_100192612 420
26 3300013297 Ga0157378_10096769 Ga0157378_100967692 420
27 3300014745 Ga0157377_10019730 Ga0157377_100197302 420
28 3300003320 rootH2_10172890 rootH2_101728901 421
29 3300025302 Ga0207426_1007105 Ga0207426_10071055 421
30 3300005617 Ga0068859_100032428 Ga0068859_1000324283 422
31 3300006931 Ga0097620_100032429 Ga0097620_1000324293 422
32 3300026118 Ga0207675_100297812 Ga0207675_1002978121 422
33 3300031251 Ga0265327_10000432 Ga0265327_1000043225 422
34 3300003203 JGI25406J46586_10001143 JGI25406J46586_100011437 423
35 3300005985 Ga0081539_10001463 Ga0081539_1000146329 423
36 3300013306 Ga0163162_10012520 Ga0163162_100125204 423
37 3300005295 Ga0065707_10128623 Ga0065707_101286232 424
38 3300030521 Ga0307511_10000455 Ga0307511_1000045519 424
39 3300003354 JGI25160J50197_1001926 JGI25160J50197_10019265 425
40 3300014969 Ga0157376_10091495 Ga0157376_100914952 425
41 3300025302 Ga0207426_1000009 Ga0207426_1000009467 425
42 3300046648 Ga0495611_0000883 Ga0495611_0000883_14816_16243 425
43 3300025918 Ga0207662_10078606 Ga0207662_100786062 426
44 3300005331 Ga0070670_100207058 Ga0070670_1002070581 427
45 3300013307 Ga0157372_10009782 Ga0157372_100097824 427
46 iso_pu_bacteria 2881955468 2881957396 427
47 3300013297 Ga0157378_10021894 Ga0157378_100218942 428
48 3300013306 Ga0163162_10139223 Ga0163162_101392232 428
49 3300025904 Ga0207647_10000057 Ga0207647_1000005776 428
50 3300048913 Ga0496110_0223668 Ga0496110_0223668_265_1605 428
51 3300053139 Ga0500568_0001558 Ga0500568_0001558_5113_6459 428
52 3300006237 Ga0097621_100000538 Ga0097621_1000005385 429
53 3300009545 Ga0105237_10000340 Ga0105237_1000034055 429
54 3300013297 Ga0157378_10005689 Ga0157378_100056898 429
55 3300013306 Ga0163162_10001458 Ga0163162_1000145819 429
56 3300013308 Ga0157375_10000813 Ga0157375_100008135 429
57 3300014969 Ga0157376_10003431 Ga0157376_100034315 429
58 3300017792 Ga0163161_10009151 Ga0163161_100091516 429
59 3300048903 Ga0496100_0022262 Ga0496100_0022262_1423_2811 429
60 3300048917 Ga0496114_0010269 Ga0496114_0010269_2459_3847 429
61 3300005577 Ga0068857_100135209 Ga0068857_1001352092 430
62 3300025940 Ga0207691_10134447 Ga0207691_101344472 430
63 3300005290 Ga0065712_10003179 Ga0065712_100031793 431
64 3300005334 Ga0068869_100034791 Ga0068869_1000347914 431
65 3300005354 Ga0070675_100020772 Ga0070675_1000207722 431
66 3300005618 Ga0068864_100078754 Ga0068864_1000787542 431
67 3300005841 Ga0068863_100014057 Ga0068863_1000140573 431
68 3300005842 Ga0068858_100089429 Ga0068858_1000894293 431
69 3300006237 Ga0097621_100016427 Ga0097621_1000164271 431
70 3300006358 Ga0068871_100098650 Ga0068871_1000986502 431
71 3300006844 Ga0075428_100232060 Ga0075428_1002320602 431
72 3300009093 Ga0105240_10000486 Ga0105240_1000048648 431
73 3300009176 Ga0105242_10050586 Ga0105242_100505861 431
74 3300013306 Ga0163162_10183385 Ga0163162_101833852 431
75 3300014968 Ga0157379_10300936 Ga0157379_103009361 431
76 3300025934 Ga0207686_10007340 Ga0207686_100073405 431
77 3300025981 Ga0207640_10132367 Ga0207640_101323671 431
78 3300026095 Ga0207676_10088983 Ga0207676_100889832 431
79 3300028794 Ga0307515_10000010 Ga0307515_10000010219 431
80 3300049569 Ga0501032_0036935 Ga0501032_0036935_556_1905 431
81 3300049571 Ga0501034_0015752 Ga0501034_0015752_5843_7192 431
82 3300049574 Ga0501038_0010077 Ga0501038_0010077_1915_3264 431
83 3300049579 Ga0501043_0066559 Ga0501043_0066559_295_1644 431
84 3300049580 Ga0501046_0004347 Ga0501046_0004347_8144_9493 431
85 3300049581 Ga0501047_0055464 Ga0501047_0055464_1109_2458 431
86 3300049582 Ga0501048_0046950 Ga0501048_0046950_1332_2681 431
87 3300049586 Ga0501070_0078753 Ga0501070_0078753_285_1634 431
88 3300049589 Ga0501073_0060344 Ga0501073_0060344_1131_2480 431
89 3300049590 Ga0501074_0000815 Ga0501074_0000815_16530_17879 431
90 3300049744 Ga0501083_0022895 Ga0501083_0022895_2464_3813 431
91 3300049823 Ga0501044_0041725 Ga0501044_0041725_74_1426 431
92 3300005290 Ga0065712_10003124 Ga0065712_100031242 432
93 3300005471 Ga0070698_100028674 Ga0070698_1000286744 432
94 3300005844 Ga0068862_100154253 Ga0068862_1001542532 432
95 3300050508 nmdc:mga09592_121321_c1 nmdc:mga09592_121321_c1_839_2206 432
96 3300005329 Ga0070683_100023084 Ga0070683_1000230845 433
97 3300005340 Ga0070689_100141820 Ga0070689_1001418201 433
98 3300006881 Ga0068865_100176347 Ga0068865_1001763472 433
99 3300009093 Ga0105240_10168964 Ga0105240_101689642 433
100 3300009177 Ga0105248_10090426 Ga0105248_100904261 433
101 3300013104 Ga0157370_10034508 Ga0157370_100345081 433
102 3300013296 Ga0157374_10034411 Ga0157374_100344112 433
103 3300025913 Ga0207695_10109495 Ga0207695_101094952 433
104 3300026089 Ga0207648_10149772 Ga0207648_101497722 433
105 3300028794 Ga0307515_10000469 Ga0307515_1000046953 433
106 3300049571 Ga0501034_0022539 Ga0501034_0022539_2492_3877 433
107 iso_pu_bacteria 2818991442 2819572532 433
108 3300005327 Ga0070658_10024137 Ga0070658_100241375 434
109 3300005329 Ga0070683_100009554 Ga0070683_1000095543 434
110 3300005335 Ga0070666_10074517 Ga0070666_100745172 434
111 3300005339 Ga0070660_100003720 Ga0070660_1000037206 434
112 3300005344 Ga0070661_100011643 Ga0070661_1000116432 434
113 3300005457 Ga0070662_100000901 Ga0070662_10000090116 434
114 3300005530 Ga0070679_100168264 Ga0070679_1001682642 434
115 3300005539 Ga0068853_100036179 Ga0068853_1000361792 434
116 3300005539 Ga0068853_100069585 Ga0068853_1000695852 434
117 3300005563 Ga0068855_100020450 Ga0068855_1000204504 434
118 3300005564 Ga0070664_100036277 Ga0070664_1000362772 434
119 3300005577 Ga0068857_100180864 Ga0068857_1001808642 434
120 3300005614 Ga0068856_100004693 Ga0068856_1000046935 434
121 3300005834 Ga0068851_10077057 Ga0068851_100770571 434
122 3300006237 Ga0097621_100137807 Ga0097621_1001378072 434
123 3300025903 Ga0207680_10011388 Ga0207680_100113884 434
124 3300025904 Ga0207647_10100340 Ga0207647_101003401 434
125 3300025919 Ga0207657_10011658 Ga0207657_100116586 434
126 3300025920 Ga0207649_10029647 Ga0207649_100296472 434
127 3300025921 Ga0207652_10034279 Ga0207652_100342793 434
128 3300025933 Ga0207706_10031256 Ga0207706_100312563 434
129 3300025945 Ga0207679_10032244 Ga0207679_100322443 434
130 3300025949 Ga0207667_10028713 Ga0207667_100287133 434
131 3300026023 Ga0207677_10107458 Ga0207677_101074581 434
132 3300026041 Ga0207639_10013469 Ga0207639_100134693 434
133 3300031251 Ga0265327_10016035 Ga0265327_100160352 434
134 iso_pu_bacteria 2818991444 2819590720 434
135 iso_pu_bacteria 2839989709 2839991412 434
136 3300005334 Ga0068869_100107352 Ga0068869_1001073521 435
137 3300005843 Ga0068860_100163580 Ga0068860_1001635802 435
138 3300025972 Ga0207668_10152840 Ga0207668_101528402 435
139 3300026121 Ga0207683_10004259 Ga0207683_100042593 435
140 3300044658 Ga0466972_0000003 Ga0466972_0000003_95934_97439 435
141 3300044765 Ga0466970_0000607 Ga0466970_0000607_9748_11259 435
142 3300009147 Ga0114129_10001943 Ga0114129_1000194319 436
143 3300013296 Ga0157374_10072263 Ga0157374_100722632 436
144 3300013306 Ga0163162_10097863 Ga0163162_100978632 436
145 3300013307 Ga0157372_10095420 Ga0157372_100954203 436
146 3300013308 Ga0157375_10116957 Ga0157375_101169572 436
147 3300025925 Ga0207650_10047045 Ga0207650_100470452 436
148 3300050507 nmdc:mga05p37_1237_c1 nmdc:mga05p37_1237_c1_9103_10485 436
149 3300006237 Ga0097621_100004509 Ga0097621_1000045092 437
150 3300006358 Ga0068871_100002202 Ga0068871_1000022022 437
151 3300009093 Ga0105240_10001336 Ga0105240_1000133618 437
152 3300009093 Ga0105240_10215381 Ga0105240_102153812 437
153 3300009545 Ga0105237_10013599 Ga0105237_100135992 437
154 3300010375 Ga0105239_10002914 Ga0105239_1000291411 437
155 3300010375 Ga0105239_10007221 Ga0105239_100072216 437
156 3300013296 Ga0157374_10014844 Ga0157374_100148442 437
157 3300013307 Ga0157372_10241828 Ga0157372_102418282 437
158 3300014969 Ga0157376_10032458 Ga0157376_100324583 437
159 3300015265 Ga0182005_1000023 Ga0182005_100002334 437
160 3300025914 Ga0207671_10029927 Ga0207671_100299272 437
161 3300044684 Ga0466966_0001169 Ga0466966_0001169_11411_12793 437
162 3300045049 Ga0466959_0001202 Ga0466959_0001202_9162_10544 437
163 3300048924 Ga0496121_0000343 Ga0496121_0000343_48929_50311 437
164 3300048927 Ga0496124_0073889 Ga0496124_0073889_653_2026 437
165 3300049573 Ga0501037_0083075 Ga0501037_0083075_377_1759 437
166 3300053108 Ga0500562_000077 Ga0500562_000077_1557_2945 437
167 3300053156 Ga0500622_0003322 Ga0500622_0003322_1284_2696 437
168 3300053730 Ga0500645_007224 Ga0500645_007224_1135_2523 437
169 iso_pu_bacteria 2929154850 2929157737 437
170 3300003320 rootH2_10015349 rootH2_1001534910 438
171 3300005458 Ga0070681_10102700 Ga0070681_101027003 438
172 3300005539 Ga0068853_100061816 Ga0068853_1000618163 438
173 3300005563 Ga0068855_100060558 Ga0068855_1000605582 438
174 3300005563 Ga0068855_100060696 Ga0068855_1000606963 438
175 3300005577 Ga0068857_100086377 Ga0068857_1000863771 438
176 3300005614 Ga0068856_100032804 Ga0068856_1000328043 438
177 3300006237 Ga0097621_100011255 Ga0097621_1000112554 438
178 3300006358 Ga0068871_100048085 Ga0068871_1000480852 438
179 3300006358 Ga0068871_100084494 Ga0068871_1000844942 438
180 3300009545 Ga0105237_10006210 Ga0105237_100062105 438
181 3300013307 Ga0157372_10026707 Ga0157372_100267073 438
182 3300025914 Ga0207671_10011539 Ga0207671_100115396 438
183 3300025949 Ga0207667_10045074 Ga0207667_100450742 438
184 3300025949 Ga0207667_10049845 Ga0207667_100498453 438
185 3300026041 Ga0207639_10170449 Ga0207639_101704492 438
186 3300026078 Ga0207702_10046759 Ga0207702_100467593 438
187 3300026116 Ga0207674_10097396 Ga0207674_100973962 438
188 3300031251 Ga0265327_10000239 Ga0265327_1000023986 438
189 3300032004 Ga0307414_10010519 Ga0307414_100105197 438
190 3300037418 Ga0395900_0096540 Ga0395900_0096540_805_2214 438
191 3300053090 Ga0500646_0004456 Ga0500646_0004456_1073_2440 438
192 iso_pu_bacteria 2738541278 2738726280 438
193 iso_pu_bacteria 2883068021 2883072737 438
194 3300013307 Ga0157372_10024509 Ga0157372_100245094 439
195 3300025919 Ga0207657_10089261 Ga0207657_100892612 439
196 3300028380 Ga0268265_10133267 Ga0268265_101332671 439
197 3300037418 Ga0395900_0038965 Ga0395900_0038965_655_2064 439
198 3300044656 Ga0466969_0001938 Ga0466969_0001938_1424_2821 439
199 3300005289 Ga0065704_10080603 Ga0065704_100806033 440
200 3300031507 Ga0307509_10054248 Ga0307509_100542483 440
201 3300031507 Ga0307509_10197122 Ga0307509_101971222 440
202 3300031616 Ga0307508_10003081 Ga0307508_100030815 440
203 3300042876 Ga0451577_0003143 Ga0451577_0003143_16901_18328 440
204 iso_pu_bacteria 2818991460 2819680699 440
205 iso_pu_bacteria 2929177148 2929178984 440
206 iso_pu_bacteria 2945977869 2945981388 440
207 iso_pu_bacteria 2946013367 2946019213 440
208 3300031456 Ga0307513_10061174 Ga0307513_100611743 441
209 3300031548 Ga0307408_100003413 Ga0307408_10000341312 441
210 3300031548 Ga0307408_100017584 Ga0307408_1000175844 441
211 3300031911 Ga0307412_10002839 Ga0307412_1000283911 441
212 3300042014 Ga0439457_011902 Ga0439457_011902_261_1628 441
213 3300053151 Ga0500604_0016162 Ga0500604_0016162_21_1427 441
214 3300013102 Ga0157371_10012233 Ga0157371_100122331 442
215 3300031731 Ga0307405_10019489 Ga0307405_100194892 442
216 3300047318 Ga0495636_0000053 Ga0495636_0000053_27653_29005 442
217 3300049571 Ga0501034_0039084 Ga0501034_0039084_711_2159 442
218 3300049705 Ga0501225_0004989 Ga0501225_0004989_214_1677 442
219 3300053098 Ga0500650_0050982 Ga0500650_0050982_162_1598 442
220 3300003320 rootH2_10013043 rootH2_100130434 443
221 3300003323 rootH1_10002797 rootH1_100027972 443
222 3300003323 rootH1_10044844 rootH1_100448442 443
223 3300003354 JGI25160J50197_1004705 JGI25160J50197_10047053 443
224 3300005327 Ga0070658_10000290 Ga0070658_1000029033 443
225 3300005563 Ga0068855_100015461 Ga0068855_1000154617 443
226 3300025302 Ga0207426_1000051 Ga0207426_1000051155 443
227 3300026041 Ga0207639_10195009 Ga0207639_101950091 443
228 3300041404 Ga0439436_0002920 Ga0439436_0002920_2576_4009 443
229 3300042007 Ga0439449_0030919 Ga0439449_0030919_444_1877 443
230 3300042014 Ga0439457_000716 Ga0439457_000716_4196_5629 443
231 3300044842 Ga0466957_0000305 Ga0466957_0000305_6528_7961 443
232 3300049581 Ga0501047_0018765 Ga0501047_0018765_2756_4168 443
233 3300049823 Ga0501044_0029191 Ga0501044_0029191_874_2286 443
234 iso_pu_bacteria 2884791551 2884795439 443
235 3300005355 Ga0070671_100144072 Ga0070671_1001440721 444
236 3300025321 Ga0207656_10002677 Ga0207656_100026774 444
237 3300044658 Ga0466972_0000013 Ga0466972_0000013_173455_174891 444
238 3300044658 Ga0466972_0008535 Ga0466972_0008535_3239_4648 444
239 3300044842 Ga0466957_0141443 Ga0466957_0141443_20_1456 444
240 3300045049 Ga0466959_0004333 Ga0466959_0004333_6794_8203 444
241 3300049581 Ga0501047_0142023 Ga0501047_0142023_216_1658 444
242 3300053086 Ga0500578_0000155 Ga0500578_0000155_68787_70223 444
243 3300053092 Ga0500583_0000043 Ga0500583_0000043_1839_3275 444
244 3300053092 Ga0500583_0001101 Ga0500583_0001101_926_2353 444
245 3300053147 Ga0500589_032283 Ga0500589_032283_159_1616 444
246 3300053153 Ga0500616_0081989 Ga0500616_0081989_142_1578 444
247 3300025246 Ga0209646_1005293 Ga0209646_10052932 445
248 2162886007 SwRhRL2b_contig_1790489 SwRhRL2b_0282.00002600 455
249 3300005289 Ga0065704_10070136 Ga0065704_10070136490 455

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13636

Methyltranf_PUA

RNA-binding PUA-like domain of methyltransferase RsmF

452

500

0.97

PF17125

Methyltr_RsmF_N

N-terminal domain of 16S rRNA methyltransferase RsmF

53

138

0.89

PF01189

Methyltr_RsmB-F

16S rRNA methyltransferase RsmB/F

148

347

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
2yxl-assembly1.cif.gz_A crystal structure of ph0851 0.8805 2 293
8esq-assembly1.cif.gz_q ytm1 associated nascent 60s ribosome state 2 0.8741 4 295
8i9z-assembly1.cif.gz_CP cryo-em structure of a chaetomium thermophilum pre-60s ribosomal subunit - state spb4 0.8592 4 295
8i9y-assembly1.cif.gz_CP cryo-em structure of a chaetomium thermophilum pre-60s ribosomal subunit - ytm1-2 0.8585 4 295
8fky-assembly1.cif.gz_SY human nucleolar pre-60s ribosomal subunit (state f) 0.8549 8 301
ID Description Score Start End Superfamily
2yxlA04 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9036 81 293 3.40.50.150
2yxlA04 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8994 81 293 3.40.50.150
af_Q2FZ67_236_433_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8957 85 294 3.40.50.150
af_P40991_338_614_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.8906 100 298 3.40.50.150
af_Q2FZ67_236_433_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.887 85 294 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A4U9KTC4-F1-model_v4 deleted 0.9692 4 448
AF-A0A7V9SSA0-F1-model_v4 RNA methyltransferase 0.967 1 445 GO:0001510
GO:0003723
GO:0006364
GO:0008173
AF-A0A2W4P3F3-F1-model_v4 rRNA methyltransferase 0.9611 4 453 GO:0001510
GO:0003723
GO:0006364
GO:0008173
AF-A0A7V9SSA0-F1-model_v4 RNA methyltransferase 0.9606 1 445 GO:0001510
GO:0003723
GO:0006364
GO:0008173
AF-A0A4Q3R883-F1-model_v4 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.9576 49 383 GO:0001510
GO:0003723
GO:0006364
GO:0008173

Feature Viewer

pLDDT pTM Quality
91.54 0.91 High
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Predicted Structure (AlphaFold2)

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