F360053

General Info

Members Datasets Scaffolds Average Seq Length
248 176 496 296

Family's Representative Sequence

Representative Sequence 3300037312|Ga0395899_0042686|Ga0395899_0042686_1220_2266
Length 348
Sequence MTDPLAEVVCLLRPGVHLTKVVGAAGRWGVRRTDTGQPSYCVVLDGACRLTIAGAAPITLAPGDFVLIPAAYAFSMSSLRPPPARDFDKPPAHIAPGEVRHGTRAGPPDVRFLIGHCVFDSPDAGLLVSLLPQVVHVRGAPRLATVVELLNDESRAGRPARDVVLARLLEVLLIEALRGADGTEASPGLVRGLADSRLAHALRALHAAPERAWTVTDLAREAALSRSAFFERFSRTVGMAPMAYLLTWRMALAQDLLRRGAGTVAEVAERVGYGSASTFTVAFARHAGQPPGRYARARRSSPLARELARAAVQAAPHVEHRDLHDEVGQRGGALAERGAPDGLDVVKG

Samples

Sample ID Description Type Environment
1 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
2 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
3 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
7 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
10 3300003756 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 Metagenome Endosphere
11 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
12 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
13 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
14 3300003762 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 Metagenome Endosphere
15 3300003763 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 Metagenome Endosphere
16 3300003771 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 Metagenome Endosphere
17 3300003790 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 Metagenome Endosphere
18 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
19 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
20 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
21 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
22 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
23 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
24 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
25 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
26 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
29 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
30 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
31 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
32 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
33 3300025226 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
35 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
37 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
38 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
39 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
40 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
42 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
43 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
44 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
48 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
52 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
53 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
55 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
56 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
57 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
58 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
59 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
60 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
61 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
62 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
63 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
64 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
65 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
66 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
67 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
68 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
69 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
70 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
71 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
72 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
73 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
74 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
75 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
76 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
77 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
78 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
79 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
80 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
81 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
82 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
83 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
84 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
85 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
86 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
87 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
88 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
89 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
90 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
91 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
92 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
93 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
94 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
95 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
96 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
97 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
98 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
99 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
100 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
101 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
102 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
103 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
104 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
105 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
106 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
107 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
108 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
109 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
110 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
111 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
112 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
113 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
114 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
115 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
116 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
117 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
118 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
119 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
120 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
121 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
122 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
123 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
124 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
125 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
126 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
127 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
128 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
129 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
130 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
131 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
132 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
133 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
134 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
135 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
136 3300053094 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 endosphere Metagenome Endosphere
137 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
138 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
139 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
140 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
141 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
142 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
143 2501025501 Paraburkholderia silvatlantica PVA5 Isolate Unclassified
144 2501025502 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
145 2501025504 Paraburkholderia silvatlantica SRMrh-20 Isolate Unclassified
146 2508501114 Microvirga lotononidis WSM3557 Isolate Nodule
147 2510917013 Paraburkholderia unamae MTI-641 Isolate Rhizosphere
148 2510917014 Paraburkholderia silvatlantica SRMrh-20 Isolate Unclassified
149 2510917015 Paraburkholderia silvatlantica PVA5 Isolate Unclassified
150 2513237082 Paraburkholderia mimosarum STM3621 Isolate Nodule
151 2513237083 Paraburkholderia mimosarum LMG 23256 Isolate Nodule
152 2515154189 Paraburkholderia nodosa DSM 21604 Isolate Unclassified
153 2522572158 Azospirillum halopraeferens DSM 3675 Isolate Unclassified
154 2599185236 Rhizobium sp. NFR07 Isolate Rhizoplane
155 2599185240 Burkholderia sp. NFPP32 Isolate Rhizoplane
156 2599185355 Burkholderia sp. NFACC33-1 Isolate Rhizoplane
157 2643221596 Acidovorax sp. Root70 Isolate Unclassified
158 2643221639 Pelomonas sp. Root1217 Isolate Unclassified
159 2643221646 Pelomonas sp. Root1237 Isolate Unclassified
160 2667528175 Rhizobium tropici NFR14 Isolate Rhizoplane
161 2675903129 Burkholderia pyrrocinia NFIX32 Isolate Rhizoplane
162 2818991445 Herbaspirillum hiltneri 3195 Isolate Unclassified
163 2842780639 Pseudoxanthomonas sp. R-71986 Isolate Unclassified
164 2857576091 Pigmentiphaga sp. R-72090 Isolate Unclassified
165 2863421361 Burkholderia cenocepacia CACua-24 Isolate Rhizosphere
166 2883087390 Paraburkholderia guartelaensis CNPSo 3008 Isolate Unclassified
167 2904564687 Burkholderia sp. 571 Isolate Unclassified
168 2904571731 Burkholderia cenocepacia 574 Isolate Unclassified
169 2919527303 Paraburkholderia strydomiana 3827 Isolate Unclassified
170 2928536128 Burkholderia sola 565 Isolate Unclassified
171 8003955200 Paraburkholderia mimosarum LMG 23256 Isolate Nodule
172 8018845410 Burkholderia reimsis BE51 Isolate Rhizosphere
173 8020938398 Burkholderia sp. BE12 Isolate Rhizosphere
174 8020945358 Burkholderia sp. BE17 Isolate Rhizosphere
175 8020953355 Burkholderia sp. BE24 Isolate Rhizosphere
176 8055301274 Paraburkholderia kirstenboschensis LMG 28727 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 86.29
Metatranscriptomes 0
Isolates 13.71

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 22.18
Nodule 2.82
Rhizoplane 3.23
Rhizosphere 56.45
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0395899_0042686 3300037312 Bacteria 3384
2 JGI25155J39150_1000039 3300002704 Bacteria 91670
3 JGI25156J39149_1000096 3300002705 Bacteria 64397
4 JGI25156J39149_1000817 3300002705 Bacteria 15862
5 JGI25154J39366_1000077 3300002738 Bacteria 90455
6 JGI25157J39369_1000065 3300002741 Bacteria 98536
7 JGI25165J46597_1000281 3300003214 Bacteria 65020
8 rootH1_10004619 3300003316 Bacteria 17626
9 rootL2_10019228 3300003322 Bacteria 14276
10 rootH1_10045939 3300003323 Bacteria 5445
11 rootH1_10094680 3300003323 Bacteria 5648
12 rootH1_10177001 3300003323 Bacteria 3600
13 Ga0055533_1000104 3300003756 Bacteria 106505
14 Ga0055532_1000003 3300003758 Bacteria 494004
15 Ga0055532_1000005 3300003758 Bacteria 458107
16 Ga0055532_1000231 3300003758 Bacteria 41528
17 Ga0055532_1000621 3300003758 Bacteria 13968
18 Ga0055527_1000006 3300003760 Bacteria 494004
19 Ga0055527_1000152 3300003760 Bacteria 49107
20 Ga0055527_1000188 3300003760 Bacteria 41528
21 Ga0055535_1000003 3300003761 Bacteria 494004
22 Ga0055535_1000314 3300003761 Bacteria 49107
23 Ga0055535_1000592 3300003761 Bacteria 29980
24 Ga0055535_1010455 3300003761 Bacteria 1524
25 Ga0055542_1000007 3300003762 Bacteria 494004
26 Ga0055542_1000342 3300003762 Bacteria 49268
27 Ga0055529_1000003 3300003763 Bacteria 494004
28 Ga0055529_1000252 3300003763 Bacteria 65454
29 Ga0055529_1004065 3300003763 Bacteria 2285
30 Ga0055526_1000020 3300003771 Bacteria 188230
31 Ga0055528_1000688 3300003790 Bacteria 24140
32 Ga0055540_1003610 3300003792 Bacteria 7385
33 Ga0055531_10002539 3300003794 Bacteria 12140
34 Ga0070658_10266762 3300005327 Bacteria 1455
35 Ga0070682_100017653 3300005337 Bacteria 4162
36 Ga0070665_100006317 3300005548 Bacteria 12093
37 Ga0068856_100125652 3300005614 Bacteria 2568
38 Ga0075366_10001311 3300006195 Bacteria 12414
39 Ga0099826_10000002 3300006948 Bacteria 1125830
40 Ga0105244_10033866 3300009036 Bacteria 2692
41 Ga0105240_10001311 3300009093 Bacteria 42926
42 Ga0105240_10006962 3300009093 Bacteria 16517
43 Ga0105237_10258525 3300009545 Bacteria 1744
44 Ga0157369_10161791 3300013105 Bacteria 2363
45 Ga0182007_10007105 3300015262 Bacteria 4736
46 Ga0213872_10000218 3300021361 Bacteria 50680
47 Ga0209435_100043 3300025206 Bacteria 102049
48 Ga0209435_100050 3300025206 Bacteria 91356
49 Ga0209674_100025 3300025226 Bacteria 515942
50 Ga0209672_100002 3300025228 Bacteria 1733325
51 Ga0209672_100020 3300025228 Bacteria 429003
52 Ga0209672_100032 3300025228 Bacteria 324684
53 Ga0209147_100003 3300025229 Bacteria 1733325
54 Ga0209147_100011 3300025229 Bacteria 702140
55 Ga0209147_100012 3300025229 Bacteria 681990
56 Ga0209147_100024 3300025229 Bacteria 429003
57 Ga0209563_101417 3300025230 Bacteria 6397
58 Ga0209258_100005 3300025242 Bacteria 1087938
59 Ga0209258_100030 3300025242 Bacteria 470208
60 Ga0209258_100121 3300025242 Bacteria 180843
61 Ga0209258_100401 3300025242 Bacteria 54149
62 Ga0209646_1000161 3300025246 Bacteria 91356
63 Ga0209026_1000173 3300025250 Bacteria 98585
64 Ga0209677_101839 3300025253 Bacteria 8647
65 Ga0209677_108656 3300025253 Bacteria 1937
66 Ga0209148_1000006 3300025254 Bacteria 1733325
67 Ga0209148_1000022 3300025254 Bacteria 681990
68 Ga0209148_1000291 3300025254 Bacteria 75215
69 Ga0209759_1000014 3300025256 Bacteria 396291
70 Ga0209759_1000169 3300025256 Bacteria 110110
71 Ga0209233_1000018 3300025261 Bacteria 886857
72 Ga0209455_1000003 3300025272 Bacteria 1471893
73 Ga0209455_1000024 3300025272 Bacteria 676133
74 Ga0209455_1000263 3300025272 Bacteria 60487
75 Ga0209673_1000056 3300025273 Bacteria 271069
76 Ga0209564_1000006 3300025295 Bacteria 1100927
77 Ga0209257_1009913 3300025304 Bacteria 4961
78 Ga0207647_10011609 3300025904 Bacteria 6169
79 Ga0207695_10000328 3300025913 Bacteria 113378
80 Ga0207695_10000840 3300025913 Bacteria 56353
81 Ga0207671_10186444 3300025914 Bacteria 1616
82 Ga0209371_1000076 3300027312 Bacteria 195166
83 Ga0209282_1000001 3300027666 Bacteria 2450367
84 Ga0268266_10000043 3300028379 Bacteria 316604
85 Ga0307515_10173076 3300028794 Bacteria 2142
86 Ga0268256_1000087 3300030500 Bacteria 157659
87 Ga0307514_10001061 3300031649 Bacteria 39297
88 Ga0307416_100106068 3300032002 Bacteria 2462
89 Ga0373931_0003893 3300035691 Bacteria 6753
90 Ga0395900_0071542 3300037418 Bacteria 3565
91 Ga0395898_0424771 3300037466 Bacteria 1266
92 Ga0395905_0008270 3300037471 Bacteria 10274
93 Ga0395905_0138885 3300037471 Bacteria 2286
94 Ga0395901_0079211 3300038443 Bacteria 3430
95 Ga0436361_0652221 3300039447 Bacteria 12681
96 Ga0466969_0045530 3300044656 Bacteria 2178
97 Ga0495592_0007194 3300046454 Bacteria 8343
98 Ga0495590_0000099 3300046457 Bacteria 52654
99 Ga0495629_0011441 3300046459 Bacteria 6446
100 Ga0495629_0024763 3300046459 Bacteria 4272
101 Ga0495638_0000346 3300046460 Bacteria 58330
102 Ga0495641_0035321 3300046461 Bacteria 2358
103 Ga0495651_0071281 3300046462 Bacteria 2642
104 Ga0495653_0018248 3300046463 Bacteria 5701
105 Ga0495653_0019763 3300046463 Bacteria 5461
106 Ga0495580_0005811 3300046472 Bacteria 10127
107 Ga0495580_0006601 3300046472 Bacteria 9430
108 Ga0495582_0094814 3300046473 Bacteria 1666
109 Ga0495662_0061805 3300046476 Bacteria 1810
110 Ga0495662_0063777 3300046476 Bacteria 1780
111 Ga0495664_0010786 3300046477 Bacteria 5137
112 Ga0495584_0018141 3300046491 Bacteria 3577
113 Ga0495596_0002466 3300046500 Bacteria 9944
114 Ga0495596_0026577 3300046500 Bacteria 2331
115 Ga0495607_0017081 3300046501 Bacteria 4668
116 Ga0495607_0027225 3300046501 Bacteria 3538
117 Ga0495606_0000487 3300046507 Bacteria 64941
118 Ga0495606_0057766 3300046507 Bacteria 2497
119 Ga0495606_0060645 3300046507 Bacteria 2422
120 Ga0495606_0086843 3300046507 Bacteria 1932
121 Ga0495608_0001973 3300046511 Bacteria 14703
122 Ga0495608_0015108 3300046511 Bacteria 5357
123 Ga0495610_0000024 3300046512 Bacteria 304748
124 Ga0495610_0081764 3300046512 Bacteria 1482
125 Ga0495616_0010019 3300046513 Bacteria 5505
126 Ga0495618_0017410 3300046514 Bacteria 4408
127 Ga0495618_0029541 3300046514 Bacteria 3420
128 Ga0495628_0005223 3300046516 Bacteria 11398
129 Ga0495628_0008629 3300046516 Bacteria 8732
130 Ga0495628_0030020 3300046516 Bacteria 4403
131 Ga0495630_0153170 3300046517 Bacteria 1754
132 Ga0495632_0000077 3300046519 Bacteria 100834
133 Ga0495643_0069506 3300046522 Bacteria 1851
134 Ga0495648_0006327 3300046524 Bacteria 9685
135 Ga0495666_0002710 3300046526 Bacteria 8847
136 Ga0495666_0006302 3300046526 Bacteria 5977
137 Ga0495642_0000477 3300046528 Bacteria 20542
138 Ga0495652_0013882 3300046529 Bacteria 7245
139 Ga0495652_0014630 3300046529 Bacteria 7035
140 Ga0495652_0166340 3300046529 Bacteria 1707
141 Ga0495665_0004185 3300046531 Bacteria 7785
142 Ga0495665_0008869 3300046531 Bacteria 5456
143 Ga0495640_0015353 3300046533 Bacteria 5765
144 Ga0495640_0044129 3300046533 Bacteria 3101
145 Ga0495586_0068605 3300046535 Bacteria 1934
146 Ga0495609_0012207 3300046538 Bacteria 4075
147 Ga0495668_0078589 3300046616 Bacteria 1811
148 Ga0495634_0009679 3300046642 Bacteria 7094
149 Ga0495634_0042029 3300046642 Bacteria 3102
150 Ga0495625_0001608 3300046660 Bacteria 26653
151 Ga0495625_0008351 3300046660 Bacteria 8841
152 Ga0495625_0115992 3300046660 Bacteria 1827
153 Ga0495625_0199124 3300046660 Bacteria 1323
154 Ga0495661_0001867 3300046665 Bacteria 16830
155 Ga0495661_0021283 3300046665 Bacteria 4230
156 Ga0495657_0007089 3300046675 Bacteria 8694
157 Ga0495623_0029617 3300046679 Bacteria 3522
158 Ga0495646_0003279 3300046680 Bacteria 10074
159 Ga0495646_0012848 3300046680 Bacteria 5323
160 Ga0495669_0036260 3300046684 Bacteria 2179
161 Ga0495613_0090400 3300046689 Bacteria 2217
162 Ga0495624_0001622 3300046690 Bacteria 17246
163 Ga0495624_0035764 3300046690 Bacteria 3205
164 Ga0495670_0033972 3300046691 Bacteria 2538
165 Ga0495649_0000651 3300046694 Bacteria 28258
166 Ga0495589_0007171 3300046794 Bacteria 5840
167 Ga0495589_0020066 3300046794 Bacteria 3418
168 Ga0495589_0055455 3300046794 Bacteria 1952
169 Ga0495581_0028502 3300047315 Bacteria 3236
170 Ga0495604_0004786 3300047317 Bacteria 10728
171 Ga0495604_0064820 3300047317 Bacteria 2782
172 Ga0495674_0006553 3300047319 Bacteria 11171
173 Ga0495674_0097969 3300047319 Bacteria 2497
174 Ga0495672_0001726 3300047320 Bacteria 21137
175 Ga0495676_0103254 3300047321 Bacteria 2105
176 Ga0495680_0005562 3300047322 Bacteria 11828
177 Ga0495680_0017296 3300047322 Bacteria 6161
178 Ga0495683_0000990 3300047323 Bacteria 19873
179 Ga0495687_015457 3300047443 Bacteria 3880
180 Ga0495687_022083 3300047443 Bacteria 3062
181 Ga0495675_0031472 3300047444 Bacteria 3387
182 Ga0495677_0007391 3300047445 Bacteria 4110
183 Ga0495677_0009324 3300047445 Bacteria 3627
184 Ga0495679_001373 3300047446 Bacteria 13976
185 Ga0495685_008126 3300047447 Bacteria 3476
186 Ga0495681_0031008 3300047470 Bacteria 2714
187 Ga0495681_0099065 3300047470 Bacteria 1276
188 Ga0495686_0000548 3300047472 Bacteria 53688
189 Ga0495686_0001006 3300047472 Bacteria 34250
190 Ga0495686_0011019 3300047472 Bacteria 6394
191 Ga0495686_0101415 3300047472 Bacteria 1735
192 Ga0495593_0026673 3300047673 Bacteria 3187
193 Ga0495602_0006361 3300048088 Bacteria 12386
194 Ga0495602_0066537 3300048088 Bacteria 3103
195 Ga0495614_0002758 3300048089 Bacteria 7804
196 Ga0495614_0010525 3300048089 Bacteria 4079
197 Ga0496110_0099638 3300048913 Bacteria 2605
198 Ga0496111_0000317 3300048914 Bacteria 23872
199 Ga0496114_0441825 3300048917 Bacteria 1152
200 Ga0496121_0002378 3300048924 Bacteria 28917
201 Ga0496123_0017240 3300048926 Bacteria 5823
202 Ga0496124_0199240 3300048927 Bacteria 1524
203 Ga0495678_035195 3300049459 Bacteria 2055
204 Ga0495682_0008861 3300049460 Bacteria 3950
205 Ga0495682_0061429 3300049460 Bacteria 1356
206 Ga0501269_000018 3300049766 Bacteria 56999
207 nmdc:mga0k408_1486_c1 3300050493 Bacteria 12637
208 Ga0500566_0013782 3300053094 Bacteria 4756
209 Ga0500595_000481 3300053119 Bacteria 24574
210 Ga0500608_069946 3300053122 Bacteria 1669
211 Ga0500658_0001403 3300053134 Bacteria 9716
212 Ga0500573_0007147 3300053140 Bacteria 6075
213 Ga0500622_0001043 3300053156 Bacteria 23134
214 Ga0466962_0155163 3300061719 Bacteria 1112
215 2501075270 2501025501 Bacteria 7768574
216 2501082873 2501025502 Bacteria 9641094
217 2501411550 2501025504 Bacteria 8008976
218 2509076480 2508501114 Bacteria 7082538
219 2511091137 2510917013 Bacteria 9951648
220 2511099525 2510917014 Bacteria 8296963
221 2511106699 2510917015 Bacteria 7950052
222 2513555065 2513237082 Bacteria 8640282
223 2513562432 2513237083 Bacteria 8410967
224 2516020974 2515154189 Bacteria 9629850
225 2523104296 2522572158 Bacteria 6514390
226 2599719544 2599185236 Bacteria 6875203
227 2599747351 2599185240 Bacteria 7968121
228 2600209024 2599185355 Bacteria 7968906
229 2643992123 2643221596 Bacteria 5006805
230 2644218179 2643221639 Bacteria 6649903
231 2644256968 2643221646 Bacteria 6433402
232 2671117970 2667528175 Bacteria 7532676
233 2676745052 2675903129 Bacteria 7964495
234 2819594616 2818991445 Bacteria 4955017
235 2842782522 2842780639 Bacteria 4337790
236 2857579999 2857576091 Bacteria 5465855
237 2863424296 2863421361 Bacteria 7300805
238 2883090244 2883087390 Bacteria 9532701
239 2904567461 2904564687 Bacteria 7609577
240 2904574506 2904571731 Bacteria 7608790
241 2919528366 2919527303 Bacteria 7718827
242 2928540375 2928536128 Bacteria 7657547
243 8003956040 8003955200 Bacteria 8601927
244 8018852770 8018845410 Bacteria 8933938
245 8020942920 8020938398 Bacteria 7472757
246 8020953194 8020945358 Bacteria 8467355
247 8020959600 8020953355 Bacteria 7439080
248 8055306754 8055301274 Bacteria 8587385
249 Ga0395899_0042686
250 JGI25155J39150_1000039
251 JGI25156J39149_1000096
252 JGI25156J39149_1000817
253 JGI25154J39366_1000077
254 JGI25157J39369_1000065
255 JGI25165J46597_1000281
256 rootH1_10004619
257 rootL2_10019228
258 rootH1_10045939
259 rootH1_10094680
260 rootH1_10177001
261 Ga0055533_1000104
262 Ga0055532_1000003
263 Ga0055532_1000005
264 Ga0055532_1000231
265 Ga0055532_1000621
266 Ga0055527_1000006
267 Ga0055527_1000152
268 Ga0055527_1000188
269 Ga0055535_1000003
270 Ga0055535_1000314
271 Ga0055535_1000592
272 Ga0055535_1010455
273 Ga0055542_1000007
274 Ga0055542_1000342
275 Ga0055529_1000003
276 Ga0055529_1000252
277 Ga0055529_1004065
278 Ga0055526_1000020
279 Ga0055528_1000688
280 Ga0055540_1003610
281 Ga0055531_10002539
282 Ga0070658_10266762
283 Ga0070682_100017653
284 Ga0070665_100006317
285 Ga0068856_100125652
286 Ga0075366_10001311
287 Ga0099826_10000002
288 Ga0105244_10033866
289 Ga0105240_10001311
290 Ga0105240_10006962
291 Ga0105237_10258525
292 Ga0157369_10161791
293 Ga0182007_10007105
294 Ga0213872_10000218
295 Ga0209435_100043
296 Ga0209435_100050
297 Ga0209674_100025
298 Ga0209672_100002
299 Ga0209672_100020
300 Ga0209672_100032
301 Ga0209147_100003
302 Ga0209147_100011
303 Ga0209147_100012
304 Ga0209147_100024
305 Ga0209563_101417
306 Ga0209258_100005
307 Ga0209258_100030
308 Ga0209258_100121
309 Ga0209258_100401
310 Ga0209646_1000161
311 Ga0209026_1000173
312 Ga0209677_101839
313 Ga0209677_108656
314 Ga0209148_1000006
315 Ga0209148_1000022
316 Ga0209148_1000291
317 Ga0209759_1000014
318 Ga0209759_1000169
319 Ga0209233_1000018
320 Ga0209455_1000003
321 Ga0209455_1000024
322 Ga0209455_1000263
323 Ga0209673_1000056
324 Ga0209564_1000006
325 Ga0209257_1009913
326 Ga0207647_10011609
327 Ga0207695_10000328
328 Ga0207695_10000840
329 Ga0207671_10186444
330 Ga0209371_1000076
331 Ga0209282_1000001
332 Ga0268266_10000043
333 Ga0307515_10173076
334 Ga0268256_1000087
335 Ga0307514_10001061
336 Ga0307416_100106068
337 Ga0373931_0003893
338 Ga0395900_0071542
339 Ga0395898_0424771
340 Ga0395905_0008270
341 Ga0395905_0138885
342 Ga0395901_0079211
343 Ga0436361_0652221
344 Ga0466969_0045530
345 Ga0495592_0007194
346 Ga0495590_0000099
347 Ga0495629_0011441
348 Ga0495629_0024763
349 Ga0495638_0000346
350 Ga0495641_0035321
351 Ga0495651_0071281
352 Ga0495653_0018248
353 Ga0495653_0019763
354 Ga0495580_0005811
355 Ga0495580_0006601
356 Ga0495582_0094814
357 Ga0495662_0061805
358 Ga0495662_0063777
359 Ga0495664_0010786
360 Ga0495584_0018141
361 Ga0495596_0002466
362 Ga0495596_0026577
363 Ga0495607_0017081
364 Ga0495607_0027225
365 Ga0495606_0000487
366 Ga0495606_0057766
367 Ga0495606_0060645
368 Ga0495606_0086843
369 Ga0495608_0001973
370 Ga0495608_0015108
371 Ga0495610_0000024
372 Ga0495610_0081764
373 Ga0495616_0010019
374 Ga0495618_0017410
375 Ga0495618_0029541
376 Ga0495628_0005223
377 Ga0495628_0008629
378 Ga0495628_0030020
379 Ga0495630_0153170
380 Ga0495632_0000077
381 Ga0495643_0069506
382 Ga0495648_0006327
383 Ga0495666_0002710
384 Ga0495666_0006302
385 Ga0495642_0000477
386 Ga0495652_0013882
387 Ga0495652_0014630
388 Ga0495652_0166340
389 Ga0495665_0004185
390 Ga0495665_0008869
391 Ga0495640_0015353
392 Ga0495640_0044129
393 Ga0495586_0068605
394 Ga0495609_0012207
395 Ga0495668_0078589
396 Ga0495634_0009679
397 Ga0495634_0042029
398 Ga0495625_0001608
399 Ga0495625_0008351
400 Ga0495625_0115992
401 Ga0495625_0199124
402 Ga0495661_0001867
403 Ga0495661_0021283
404 Ga0495657_0007089
405 Ga0495623_0029617
406 Ga0495646_0003279
407 Ga0495646_0012848
408 Ga0495669_0036260
409 Ga0495613_0090400
410 Ga0495624_0001622
411 Ga0495624_0035764
412 Ga0495670_0033972
413 Ga0495649_0000651
414 Ga0495589_0007171
415 Ga0495589_0020066
416 Ga0495589_0055455
417 Ga0495581_0028502
418 Ga0495604_0004786
419 Ga0495604_0064820
420 Ga0495674_0006553
421 Ga0495674_0097969
422 Ga0495672_0001726
423 Ga0495676_0103254
424 Ga0495680_0005562
425 Ga0495680_0017296
426 Ga0495683_0000990
427 Ga0495687_015457
428 Ga0495687_022083
429 Ga0495675_0031472
430 Ga0495677_0007391
431 Ga0495677_0009324
432 Ga0495679_001373
433 Ga0495685_008126
434 Ga0495681_0031008
435 Ga0495681_0099065
436 Ga0495686_0000548
437 Ga0495686_0001006
438 Ga0495686_0011019
439 Ga0495686_0101415
440 Ga0495593_0026673
441 Ga0495602_0006361
442 Ga0495602_0066537
443 Ga0495614_0002758
444 Ga0495614_0010525
445 Ga0496110_0099638
446 Ga0496111_0000317
447 Ga0496114_0441825
448 Ga0496121_0002378
449 Ga0496123_0017240
450 Ga0496124_0199240
451 Ga0495678_035195
452 Ga0495682_0008861
453 Ga0495682_0061429
454 Ga0501269_000018
455 nmdc:mga0k408_1486_c1
456 Ga0500566_0013782
457 Ga0500595_000481
458 Ga0500608_069946
459 Ga0500658_0001403
460 Ga0500573_0007147
461 Ga0500622_0001043
462 Ga0466962_0155163
463 2501075270
464 2501082873
465 2501411550
466 2509076480
467 2511091137
468 2511099525
469 2511106699
470 2513555065
471 2513562432
472 2516020974
473 2523104296
474 2599719544
475 2599747351
476 2600209024
477 2643992123
478 2644218179
479 2644256968
480 2671117970
481 2676745052
482 2819594616
483 2842782522
484 2857579999
485 2863424296
486 2883090244
487 2904567461
488 2904574506
489 2919528366
490 2928540375
491 8003956040
492 8018852770
493 8020942920
494 8020953194
495 8020959600
496 8055306754

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12833

HTH_18

Helix-turn-helix domain

218

297

0.98

PF00165

HTH_AraC

Bacterial regulatory helix-turn-helix proteins, AraC family

207

246

0.95

PF12852

Cupin_6

Cupin

3

180

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
3lsg-assembly1.cif.gz_A the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.9177 199 295
3lsg-assembly2.cif.gz_D the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.9164 199 287
6swi-assembly1.cif.gz_A the c-terminal domain of arat, a response regulator from geobacillus stearothermophilus 0.9067 195 297
3w6v-assembly1.cif.gz_A crystal structure of the dna-binding domain of adpa, the global transcriptional factor, in complex with a target dna 0.9038 195 304
3lsg-assembly3.cif.gz_E the crystal structure of the c-terminal domain of the two-component response regulator yesn from fusobacterium nucleatum subsp. nucleatum atcc 25586 0.9005 199 290
ID Description Score Start End Superfamily
3lsgA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9927 252 295 1.10.10.60
af_P32677_219_275_1.10.10.60 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9793 249 301 1.10.10.60
1d5yD02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9663 249 296 1.10.10.60
3lsgB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9616 253 295 1.10.10.60
3lsgC02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Homeodomain-like 0.9495 252 295 1.10.10.60
ID Description Score Start End GO Terms
AF-U7UN89-F1-model_v4 DNA-binding helix-turn-helix protein 0.9307 208 298 GO:0003700
GO:0043565
AF-A0A8B1B359-F1-model_v4 deleted 0.9191 203 302
AF-A0A2W4NK05-F1-model_v4 deleted 0.9116 195 299
AF-A0A6V8JZR6-F1-model_v4 HTH araC/xylS-type domain-containing protein 0.9103 203 304 GO:0003700
GO:0043565
AF-A0A5S5CLG3-F1-model_v4 AraC family transcriptional regulator of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase 0.9063 196 304 GO:0003700
GO:0006281
GO:0008168
GO:0008270
GO:0032259
GO:0043565

Map